Accuracy as a function taxon evenness & % atom 13C

Variable parameters:

Partition communities into 'dominant' and 'rare' subsets
- dominant/rare cutoff: 1% relative abundance?
Assess sensitivity & specificity for each subset
Note:
- Much less time to perform if using data from past simulation run datasets

Analysis:

Sup Figures:
- Same as above simulation runs, but split into 'dominant' vs 'rare'

User variables



In [1]:

    
workDir = '/home/nick/notebook/SIPSim/dev/bac_genome1210/'
sourceDir = os.path.join(workDir, 'atomIncorp_evenness')
buildDir = os.path.join(workDir, 'atomIncorp_evenness_abund')
R_dir = '/home/nick/notebook/SIPSim/lib/R/'

Init



In [2]:

    
import glob
from os.path import abspath
import nestly
from IPython.display import Image, display



In [3]:

    
%load_ext rpy2.ipython



In [4]:

    
%%R
library(ggplot2)
library(dplyr)
library(tidyr)
library(gridExtra)









    





Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

Loading required package: grid



In [5]:

    
if not os.path.isdir(buildDir):
    os.makedirs(buildDir)

Nestly



In [10]:

    
# building tree structure
nest = nestly.Nest()

## varying params
#-- full run --#
#nest.add('percIncorp', [0, 25, 50, 100])
#nest.add('percTaxa', [1, 5, 10, 25, 50])
#nest.add('rep', range(1,21))

#-- full run --#
nest.add('abund_dist_p', ['mean:10,sigma:1','mean:10,sigma:2','mean:10,sigma:3'])
nest.add('percIncorp', [0,5,10,15,20,30,40,50,75,100])
nest.add('rep', range(1,21))


## set params
nest.add('percTaxa', [10], create_dir=False)
nest.add('np', [6], create_dir=False)
nest.add('abs', ['1e9'], create_dir=False)
nest.add('subsample_mean', [30000], create_dir=False) 
nest.add('subsample_scale', [5000], create_dir=False) 
nest.add('BD_min', [1.71], create_dir=False)
nest.add('BD_max', [1.75], create_dir=False)
nest.add('padj', [0.1], create_dir=False)
nest.add('log2', [0.25], create_dir=False)
nest.add('topTaxaToPlot', [100], create_dir=False)

## input/output files
nest.add('buildDir', [buildDir], create_dir=False)
nest.add('sourceDir', [sourceDir], create_dir=False)
nest.add('frag_file', ['ampFrags_kde_dif'], create_dir=False)
nest.add('comm_file', ['comm.txt'], create_dir=False)
nest.add('R_dir', [R_dir], create_dir=False)

# building directory tree
nest.build(buildDir)



In [11]:

    
bashFile = os.path.join(buildDir, 'SIPSimRun.sh')



In [12]:

    
%%writefile $bashFile
#!/bin/bash

export PATH={R_dir}:$PATH

# copying DESeq files
cp {sourceDir}/{abund_dist_p}/{percIncorp}/{rep}/{comm_file} .
cp {sourceDir}/{abund_dist_p}/{percIncorp}/{rep}/OTU_n2_abs{abs}_sub-norm_DESeq2 .
cp {sourceDir}/{abund_dist_p}/{percIncorp}/{rep}/{frag_file}_incorp_BD-shift.txt .

## DESeq2
DESeq2_rare-dominant.r \
    OTU_n2_abs{abs}_sub-norm_DESeq2 \
    {comm_file} \
    -o OTU_n2_abs{abs}_sub-norm_DESeq2
    
## Confusion matrix
### dominant
DESeq2_confuseMtx.r \
    {frag_file}_incorp_BD-shift.txt \
    OTU_n2_abs{abs}_sub-norm_DESeq2_dom \
    --padj {padj} \
    -o DESeq2-cMtx_dom
### rare    
DESeq2_confuseMtx.r \
    {frag_file}_incorp_BD-shift.txt \
    OTU_n2_abs{abs}_sub-norm_DESeq2_rare \
    --padj {padj} \
    -o DESeq2-cMtx_rare









    



Writing /home/nick/notebook/SIPSim/dev/bac_genome1210/atomIncorp_evenness_abund/SIPSimRun.sh



In [13]:

    
!chmod 775 $bashFile



In [14]:

    
!cd $workDir; \
    nestrun -j 20 --template-file $bashFile -d atomIncorp_evenness_abund --log-file log.txt









    



2015-08-10 11:56:00,214 * INFO * Template: ./SIPSimRun.sh
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2015-08-10 11:59:16,947 * INFO * [112790] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/8
2015-08-10 11:59:20,623 * INFO * [112510] atomIncorp_evenness_abund/mean:10,sigma:3/75/20 Finished with 0
2015-08-10 11:59:20,625 * INFO * [112832] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/3
2015-08-10 11:59:21,326 * INFO * [112534] atomIncorp_evenness_abund/mean:10,sigma:3/75/7 Finished with 0
2015-08-10 11:59:21,328 * INFO * [112844] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/13
2015-08-10 11:59:22,237 * INFO * [112574] atomIncorp_evenness_abund/mean:10,sigma:3/75/18 Finished with 0
2015-08-10 11:59:22,240 * INFO * [112862] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/10
2015-08-10 11:59:24,725 * INFO * [112554] atomIncorp_evenness_abund/mean:10,sigma:3/75/19 Finished with 0
2015-08-10 11:59:24,728 * INFO * [112890] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/2
2015-08-10 11:59:32,159 * INFO * [112586] atomIncorp_evenness_abund/mean:10,sigma:3/75/15 Finished with 0
2015-08-10 11:59:32,162 * INFO * [112966] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/12
2015-08-10 11:59:33,682 * INFO * [112666] atomIncorp_evenness_abund/mean:10,sigma:3/75/16 Finished with 0
2015-08-10 11:59:33,685 * INFO * [112994] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/1
2015-08-10 11:59:35,700 * INFO * [112626] atomIncorp_evenness_abund/mean:10,sigma:3/75/11 Finished with 0
2015-08-10 11:59:35,703 * INFO * [113022] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/4
2015-08-10 11:59:38,783 * INFO * [112684] atomIncorp_evenness_abund/mean:10,sigma:3/75/9 Finished with 0
2015-08-10 11:59:38,786 * INFO * [113056] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/5
2015-08-10 11:59:41,078 * INFO * [112712] atomIncorp_evenness_abund/mean:10,sigma:3/75/17 Finished with 0
2015-08-10 11:59:41,081 * INFO * [113082] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/75/6
2015-08-10 11:59:42,172 * INFO * [112790] atomIncorp_evenness_abund/mean:10,sigma:3/75/8 Finished with 0
2015-08-10 11:59:42,174 * INFO * [113100] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/20
2015-08-10 11:59:43,818 * INFO * [112844] atomIncorp_evenness_abund/mean:10,sigma:3/75/13 Finished with 0
2015-08-10 11:59:43,820 * INFO * [113128] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/14
2015-08-10 11:59:48,423 * INFO * [112832] atomIncorp_evenness_abund/mean:10,sigma:3/75/3 Finished with 0
2015-08-10 11:59:48,426 * INFO * [113184] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/7
2015-08-10 11:59:52,465 * INFO * [112862] atomIncorp_evenness_abund/mean:10,sigma:3/75/10 Finished with 0
2015-08-10 11:59:52,468 * INFO * [113232] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/19
2015-08-10 11:59:55,920 * INFO * [112890] atomIncorp_evenness_abund/mean:10,sigma:3/75/2 Finished with 0
2015-08-10 11:59:55,923 * INFO * [113273] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/18
2015-08-10 11:59:57,683 * INFO * [112994] atomIncorp_evenness_abund/mean:10,sigma:3/75/1 Finished with 0
2015-08-10 11:59:57,686 * INFO * [113308] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/15
2015-08-10 12:00:01,033 * INFO * [113022] atomIncorp_evenness_abund/mean:10,sigma:3/75/4 Finished with 0
2015-08-10 12:00:01,036 * INFO * [113336] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/11
2015-08-10 12:00:04,386 * INFO * [113100] atomIncorp_evenness_abund/mean:10,sigma:3/15/20 Finished with 0
2015-08-10 12:00:04,389 * INFO * [113370] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/16
2015-08-10 12:00:04,540 * INFO * [113056] atomIncorp_evenness_abund/mean:10,sigma:3/75/5 Finished with 0
2015-08-10 12:00:04,543 * INFO * [113382] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/9
2015-08-10 12:00:05,546 * INFO * [112966] atomIncorp_evenness_abund/mean:10,sigma:3/75/12 Finished with 0
2015-08-10 12:00:05,548 * INFO * [113408] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/17
2015-08-10 12:00:08,896 * INFO * [113128] atomIncorp_evenness_abund/mean:10,sigma:3/15/14 Finished with 0
2015-08-10 12:00:08,898 * INFO * [113442] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/8
2015-08-10 12:00:08,944 * INFO * [113082] atomIncorp_evenness_abund/mean:10,sigma:3/75/6 Finished with 0
2015-08-10 12:00:08,946 * INFO * [113454] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/3
2015-08-10 12:00:13,500 * INFO * [113184] atomIncorp_evenness_abund/mean:10,sigma:3/15/7 Finished with 0
2015-08-10 12:00:13,502 * INFO * [113516] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/13
2015-08-10 12:00:18,006 * INFO * [113232] atomIncorp_evenness_abund/mean:10,sigma:3/15/19 Finished with 0
2015-08-10 12:00:18,008 * INFO * [113578] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/10
2015-08-10 12:00:20,204 * INFO * [113308] atomIncorp_evenness_abund/mean:10,sigma:3/15/15 Finished with 0
2015-08-10 12:00:20,206 * INFO * [113606] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/2
2015-08-10 12:00:22,869 * INFO * [113370] atomIncorp_evenness_abund/mean:10,sigma:3/15/16 Finished with 0
2015-08-10 12:00:22,871 * INFO * [113642] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/12
2015-08-10 12:00:23,445 * INFO * [113273] atomIncorp_evenness_abund/mean:10,sigma:3/15/18 Finished with 0
2015-08-10 12:00:23,449 * INFO * [113660] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/1
2015-08-10 12:00:26,044 * INFO * [113336] atomIncorp_evenness_abund/mean:10,sigma:3/15/11 Finished with 0
2015-08-10 12:00:26,046 * INFO * [113680] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/4
2015-08-10 12:00:27,689 * INFO * [113382] atomIncorp_evenness_abund/mean:10,sigma:3/15/9 Finished with 0
2015-08-10 12:00:27,692 * INFO * [113714] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/5
2015-08-10 12:00:31,338 * INFO * [113454] atomIncorp_evenness_abund/mean:10,sigma:3/15/3 Finished with 0
2015-08-10 12:00:31,340 * INFO * [113748] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/15/6
2015-08-10 12:00:32,580 * INFO * [113442] atomIncorp_evenness_abund/mean:10,sigma:3/15/8 Finished with 0
2015-08-10 12:00:32,583 * INFO * [113774] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/20
2015-08-10 12:00:36,923 * INFO * [113408] atomIncorp_evenness_abund/mean:10,sigma:3/15/17 Finished with 0
2015-08-10 12:00:36,925 * INFO * [113828] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/14
2015-08-10 12:00:39,579 * INFO * [113516] atomIncorp_evenness_abund/mean:10,sigma:3/15/13 Finished with 0
2015-08-10 12:00:39,581 * INFO * [113886] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/7
2015-08-10 12:00:41,998 * INFO * [113606] atomIncorp_evenness_abund/mean:10,sigma:3/15/2 Finished with 0
2015-08-10 12:00:42,000 * INFO * [113914] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/19
2015-08-10 12:00:43,623 * INFO * [113578] atomIncorp_evenness_abund/mean:10,sigma:3/15/10 Finished with 0
2015-08-10 12:00:43,625 * INFO * [113948] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/18
2015-08-10 12:00:46,007 * INFO * [113714] atomIncorp_evenness_abund/mean:10,sigma:3/15/5 Finished with 0
2015-08-10 12:00:46,009 * INFO * [113982] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/15
2015-08-10 12:00:46,674 * INFO * [113680] atomIncorp_evenness_abund/mean:10,sigma:3/15/4 Finished with 0
2015-08-10 12:00:46,676 * INFO * [113994] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/11
2015-08-10 12:00:47,343 * INFO * [113642] atomIncorp_evenness_abund/mean:10,sigma:3/15/12 Finished with 0
2015-08-10 12:00:47,345 * INFO * [114006] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/16
2015-08-10 12:00:48,001 * INFO * [113660] atomIncorp_evenness_abund/mean:10,sigma:3/15/1 Finished with 0
2015-08-10 12:00:48,003 * INFO * [114024] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/9
2015-08-10 12:00:48,076 * INFO * [113748] atomIncorp_evenness_abund/mean:10,sigma:3/15/6 Finished with 0
2015-08-10 12:00:48,078 * INFO * [114036] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/17
2015-08-10 12:00:57,034 * INFO * [113774] atomIncorp_evenness_abund/mean:10,sigma:3/0/20 Finished with 0
2015-08-10 12:00:57,036 * INFO * [114178] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/8
2015-08-10 12:00:59,584 * INFO * [113828] atomIncorp_evenness_abund/mean:10,sigma:3/0/14 Finished with 0
2015-08-10 12:00:59,586 * INFO * [114206] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/3
2015-08-10 12:00:59,805 * INFO * [113948] atomIncorp_evenness_abund/mean:10,sigma:3/0/18 Finished with 0
2015-08-10 12:00:59,807 * INFO * [114226] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/13
2015-08-10 12:01:01,562 * INFO * [113914] atomIncorp_evenness_abund/mean:10,sigma:3/0/19 Finished with 0
2015-08-10 12:01:01,565 * INFO * [114254] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/10
2015-08-10 12:01:03,633 * INFO * [113886] atomIncorp_evenness_abund/mean:10,sigma:3/0/7 Finished with 0
2015-08-10 12:01:03,636 * INFO * [114312] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/2
2015-08-10 12:01:03,958 * INFO * [113982] atomIncorp_evenness_abund/mean:10,sigma:3/0/15 Finished with 0
2015-08-10 12:01:03,960 * INFO * [114324] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/12
2015-08-10 12:01:04,998 * INFO * [114036] atomIncorp_evenness_abund/mean:10,sigma:3/0/17 Finished with 0
2015-08-10 12:01:05,001 * INFO * [114350] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/1
2015-08-10 12:01:08,353 * INFO * [114024] atomIncorp_evenness_abund/mean:10,sigma:3/0/9 Finished with 0
2015-08-10 12:01:08,355 * INFO * [114405] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/4
2015-08-10 12:01:08,906 * INFO * [113994] atomIncorp_evenness_abund/mean:10,sigma:3/0/11 Finished with 0
2015-08-10 12:01:08,909 * INFO * [114417] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/5
2015-08-10 12:01:10,222 * INFO * [114006] atomIncorp_evenness_abund/mean:10,sigma:3/0/16 Finished with 0
2015-08-10 12:01:10,224 * INFO * [114443] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/0/6
2015-08-10 12:01:17,582 * INFO * [114178] atomIncorp_evenness_abund/mean:10,sigma:3/0/8 Finished with 0
2015-08-10 12:01:17,584 * INFO * [114543] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/20
2015-08-10 12:01:19,867 * INFO * [114254] atomIncorp_evenness_abund/mean:10,sigma:3/0/10 Finished with 0
2015-08-10 12:01:19,869 * INFO * [114577] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/14
2015-08-10 12:01:19,968 * INFO * [114206] atomIncorp_evenness_abund/mean:10,sigma:3/0/3 Finished with 0
2015-08-10 12:01:19,970 * INFO * [114589] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/7
2015-08-10 12:01:24,234 * INFO * [114226] atomIncorp_evenness_abund/mean:10,sigma:3/0/13 Finished with 0
2015-08-10 12:01:24,236 * INFO * [114647] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/19
2015-08-10 12:01:24,460 * INFO * [114312] atomIncorp_evenness_abund/mean:10,sigma:3/0/2 Finished with 0
2015-08-10 12:01:24,462 * INFO * [114659] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/18
2015-08-10 12:01:29,201 * INFO * [114443] atomIncorp_evenness_abund/mean:10,sigma:3/0/6 Finished with 0
2015-08-10 12:01:29,204 * INFO * [114709] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/15
2015-08-10 12:01:29,215 * INFO * [114350] atomIncorp_evenness_abund/mean:10,sigma:3/0/1 Finished with 0
2015-08-10 12:01:29,217 * INFO * [114711] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/11
2015-08-10 12:01:30,800 * INFO * [114324] atomIncorp_evenness_abund/mean:10,sigma:3/0/12 Finished with 0
2015-08-10 12:01:30,803 * INFO * [114737] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/16
2015-08-10 12:01:32,539 * INFO * [114405] atomIncorp_evenness_abund/mean:10,sigma:3/0/4 Finished with 0
2015-08-10 12:01:32,541 * INFO * [114787] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/9
2015-08-10 12:01:33,394 * INFO * [114417] atomIncorp_evenness_abund/mean:10,sigma:3/0/5 Finished with 0
2015-08-10 12:01:33,396 * INFO * [114799] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/17
2015-08-10 12:01:38,372 * INFO * [114543] atomIncorp_evenness_abund/mean:10,sigma:3/100/20 Finished with 0
2015-08-10 12:01:38,374 * INFO * [114863] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/8
2015-08-10 12:01:39,587 * INFO * [114577] atomIncorp_evenness_abund/mean:10,sigma:3/100/14 Finished with 0
2015-08-10 12:01:39,590 * INFO * [114881] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/3
2015-08-10 12:01:41,046 * INFO * [114659] atomIncorp_evenness_abund/mean:10,sigma:3/100/18 Finished with 0
2015-08-10 12:01:41,048 * INFO * [114907] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/13
2015-08-10 12:01:43,137 * INFO * [114589] atomIncorp_evenness_abund/mean:10,sigma:3/100/7 Finished with 0
2015-08-10 12:01:43,139 * INFO * [114949] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/10
2015-08-10 12:01:46,735 * INFO * [114647] atomIncorp_evenness_abund/mean:10,sigma:3/100/19 Finished with 0
2015-08-10 12:01:46,737 * INFO * [115003] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/2
2015-08-10 12:01:48,078 * INFO * [114709] atomIncorp_evenness_abund/mean:10,sigma:3/100/15 Finished with 0
2015-08-10 12:01:48,080 * INFO * [115039] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/12
2015-08-10 12:01:50,989 * INFO * [114711] atomIncorp_evenness_abund/mean:10,sigma:3/100/11 Finished with 0
2015-08-10 12:01:50,991 * INFO * [115081] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/1
2015-08-10 12:01:51,156 * INFO * [114737] atomIncorp_evenness_abund/mean:10,sigma:3/100/16 Finished with 0
2015-08-10 12:01:51,158 * INFO * [115093] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/4
2015-08-10 12:01:52,439 * INFO * [114787] atomIncorp_evenness_abund/mean:10,sigma:3/100/9 Finished with 0
2015-08-10 12:01:52,440 * INFO * [115119] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/5
2015-08-10 12:01:52,929 * INFO * [114799] atomIncorp_evenness_abund/mean:10,sigma:3/100/17 Finished with 0
2015-08-10 12:01:52,931 * INFO * [115147] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/100/6
2015-08-10 12:01:56,184 * INFO * [114881] atomIncorp_evenness_abund/mean:10,sigma:3/100/3 Finished with 0
2015-08-10 12:01:56,185 * INFO * [115189] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/20
2015-08-10 12:01:56,938 * INFO * [114907] atomIncorp_evenness_abund/mean:10,sigma:3/100/13 Finished with 0
2015-08-10 12:01:56,939 * INFO * [115210] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/14
2015-08-10 12:01:57,388 * INFO * [114863] atomIncorp_evenness_abund/mean:10,sigma:3/100/8 Finished with 0
2015-08-10 12:01:57,390 * INFO * [115233] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/7
2015-08-10 12:02:01,176 * INFO * [114949] atomIncorp_evenness_abund/mean:10,sigma:3/100/10 Finished with 0
2015-08-10 12:02:01,178 * INFO * [115305] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/19
2015-08-10 12:02:02,371 * INFO * [115003] atomIncorp_evenness_abund/mean:10,sigma:3/100/2 Finished with 0
2015-08-10 12:02:02,373 * INFO * [115323] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/18
2015-08-10 12:02:04,378 * INFO * [115039] atomIncorp_evenness_abund/mean:10,sigma:3/100/12 Finished with 0
2015-08-10 12:02:04,380 * INFO * [115379] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/15
2015-08-10 12:02:06,610 * INFO * [115093] atomIncorp_evenness_abund/mean:10,sigma:3/100/4 Finished with 0
2015-08-10 12:02:06,611 * INFO * [115421] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/11
2015-08-10 12:02:07,680 * INFO * [115081] atomIncorp_evenness_abund/mean:10,sigma:3/100/1 Finished with 0
2015-08-10 12:02:07,682 * INFO * [115433] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/16
2015-08-10 12:02:07,895 * INFO * [115119] atomIncorp_evenness_abund/mean:10,sigma:3/100/5 Finished with 0
2015-08-10 12:02:07,897 * INFO * [115445] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/9
2015-08-10 12:02:09,312 * INFO * [115147] atomIncorp_evenness_abund/mean:10,sigma:3/100/6 Finished with 0
2015-08-10 12:02:09,314 * INFO * [115495] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/17
2015-08-10 12:02:11,965 * INFO * [115189] atomIncorp_evenness_abund/mean:10,sigma:3/10/20 Finished with 0
2015-08-10 12:02:11,967 * INFO * [115535] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/8
2015-08-10 12:02:12,649 * INFO * [115210] atomIncorp_evenness_abund/mean:10,sigma:3/10/14 Finished with 0
2015-08-10 12:02:12,650 * INFO * [115547] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/3
2015-08-10 12:02:13,097 * INFO * [115233] atomIncorp_evenness_abund/mean:10,sigma:3/10/7 Finished with 0
2015-08-10 12:02:13,099 * INFO * [115567] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/13
2015-08-10 12:02:16,938 * INFO * [115305] atomIncorp_evenness_abund/mean:10,sigma:3/10/19 Finished with 0
2015-08-10 12:02:16,940 * INFO * [115645] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/10
2015-08-10 12:02:18,411 * INFO * [115323] atomIncorp_evenness_abund/mean:10,sigma:3/10/18 Finished with 0
2015-08-10 12:02:18,413 * INFO * [115677] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/2
2015-08-10 12:02:19,401 * INFO * [115379] atomIncorp_evenness_abund/mean:10,sigma:3/10/15 Finished with 0
2015-08-10 12:02:19,404 * INFO * [115695] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/12
2015-08-10 12:02:21,524 * INFO * [115421] atomIncorp_evenness_abund/mean:10,sigma:3/10/11 Finished with 0
2015-08-10 12:02:21,526 * INFO * [115755] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/1
2015-08-10 12:02:23,757 * INFO * [115433] atomIncorp_evenness_abund/mean:10,sigma:3/10/16 Finished with 0
2015-08-10 12:02:23,759 * INFO * [115781] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/4
2015-08-10 12:02:24,063 * INFO * [115445] atomIncorp_evenness_abund/mean:10,sigma:3/10/9 Finished with 0
2015-08-10 12:02:24,065 * INFO * [115799] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/5
2015-08-10 12:02:25,195 * INFO * [115495] atomIncorp_evenness_abund/mean:10,sigma:3/10/17 Finished with 0
2015-08-10 12:02:25,197 * INFO * [115841] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/10/6
2015-08-10 12:02:26,741 * INFO * [115535] atomIncorp_evenness_abund/mean:10,sigma:3/10/8 Finished with 0
2015-08-10 12:02:26,743 * INFO * [115861] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/20
2015-08-10 12:02:28,648 * INFO * [115547] atomIncorp_evenness_abund/mean:10,sigma:3/10/3 Finished with 0
2015-08-10 12:02:28,650 * INFO * [115887] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/14
2015-08-10 12:02:29,052 * INFO * [115567] atomIncorp_evenness_abund/mean:10,sigma:3/10/13 Finished with 0
2015-08-10 12:02:29,053 * INFO * [115907] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/7
2015-08-10 12:02:32,844 * INFO * [115645] atomIncorp_evenness_abund/mean:10,sigma:3/10/10 Finished with 0
2015-08-10 12:02:32,846 * INFO * [115991] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/19
2015-08-10 12:02:34,585 * INFO * [115677] atomIncorp_evenness_abund/mean:10,sigma:3/10/2 Finished with 0
2015-08-10 12:02:34,587 * INFO * [116031] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/18
2015-08-10 12:02:34,837 * INFO * [115695] atomIncorp_evenness_abund/mean:10,sigma:3/10/12 Finished with 0
2015-08-10 12:02:34,839 * INFO * [116043] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/15
2015-08-10 12:02:37,029 * INFO * [115755] atomIncorp_evenness_abund/mean:10,sigma:3/10/1 Finished with 0
2015-08-10 12:02:37,031 * INFO * [116095] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/11
2015-08-10 12:02:39,530 * INFO * [115781] atomIncorp_evenness_abund/mean:10,sigma:3/10/4 Finished with 0
2015-08-10 12:02:39,532 * INFO * [116121] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/16
2015-08-10 12:02:39,843 * INFO * [115799] atomIncorp_evenness_abund/mean:10,sigma:3/10/5 Finished with 0
2015-08-10 12:02:39,845 * INFO * [116141] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/9
2015-08-10 12:02:40,564 * INFO * [115841] atomIncorp_evenness_abund/mean:10,sigma:3/10/6 Finished with 0
2015-08-10 12:02:40,566 * INFO * [116173] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/17
2015-08-10 12:02:42,002 * INFO * [115861] atomIncorp_evenness_abund/mean:10,sigma:3/5/20 Finished with 0
2015-08-10 12:02:42,004 * INFO * [116193] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/8
2015-08-10 12:02:44,410 * INFO * [115887] atomIncorp_evenness_abund/mean:10,sigma:3/5/14 Finished with 0
2015-08-10 12:02:44,412 * INFO * [116235] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/3
2015-08-10 12:02:44,829 * INFO * [115907] atomIncorp_evenness_abund/mean:10,sigma:3/5/7 Finished with 0
2015-08-10 12:02:44,831 * INFO * [116261] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/13
2015-08-10 12:02:47,472 * INFO * [115991] atomIncorp_evenness_abund/mean:10,sigma:3/5/19 Finished with 0
2015-08-10 12:02:47,474 * INFO * [116323] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/10
2015-08-10 12:02:50,589 * INFO * [116043] atomIncorp_evenness_abund/mean:10,sigma:3/5/15 Finished with 0
2015-08-10 12:02:50,591 * INFO * [116379] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/2
2015-08-10 12:02:50,684 * INFO * [116031] atomIncorp_evenness_abund/mean:10,sigma:3/5/18 Finished with 0
2015-08-10 12:02:50,686 * INFO * [116391] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/12
2015-08-10 12:02:52,460 * INFO * [116095] atomIncorp_evenness_abund/mean:10,sigma:3/5/11 Finished with 0
2015-08-10 12:02:52,462 * INFO * [116435] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/1
2015-08-10 12:02:54,576 * INFO * [116121] atomIncorp_evenness_abund/mean:10,sigma:3/5/16 Finished with 0
2015-08-10 12:02:54,578 * INFO * [116477] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/4
2015-08-10 12:02:55,460 * INFO * [116173] atomIncorp_evenness_abund/mean:10,sigma:3/5/17 Finished with 0
2015-08-10 12:02:55,461 * INFO * [116505] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/5
2015-08-10 12:02:55,643 * INFO * [116141] atomIncorp_evenness_abund/mean:10,sigma:3/5/9 Finished with 0
2015-08-10 12:02:55,645 * INFO * [116517] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/5/6
2015-08-10 12:02:57,740 * INFO * [116193] atomIncorp_evenness_abund/mean:10,sigma:3/5/8 Finished with 0
2015-08-10 12:02:57,742 * INFO * [116549] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/20
2015-08-10 12:02:59,508 * INFO * [116235] atomIncorp_evenness_abund/mean:10,sigma:3/5/3 Finished with 0
2015-08-10 12:02:59,510 * INFO * [116597] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/14
2015-08-10 12:03:00,613 * INFO * [116261] atomIncorp_evenness_abund/mean:10,sigma:3/5/13 Finished with 0
2015-08-10 12:03:00,615 * INFO * [116623] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/7
2015-08-10 12:03:03,620 * INFO * [116323] atomIncorp_evenness_abund/mean:10,sigma:3/5/10 Finished with 0
2015-08-10 12:03:03,622 * INFO * [116687] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/19
2015-08-10 12:03:06,426 * INFO * [116379] atomIncorp_evenness_abund/mean:10,sigma:3/5/2 Finished with 0
2015-08-10 12:03:06,428 * INFO * [116735] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/18
2015-08-10 12:03:06,645 * INFO * [116391] atomIncorp_evenness_abund/mean:10,sigma:3/5/12 Finished with 0
2015-08-10 12:03:06,647 * INFO * [116755] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/15
2015-08-10 12:03:08,384 * INFO * [116435] atomIncorp_evenness_abund/mean:10,sigma:3/5/1 Finished with 0
2015-08-10 12:03:08,386 * INFO * [116783] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/11
2015-08-10 12:03:09,247 * INFO * [116477] atomIncorp_evenness_abund/mean:10,sigma:3/5/4 Finished with 0
2015-08-10 12:03:09,249 * INFO * [116809] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/16
2015-08-10 12:03:10,676 * INFO * [116517] atomIncorp_evenness_abund/mean:10,sigma:3/5/6 Finished with 0
2015-08-10 12:03:10,677 * INFO * [116829] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/9
2015-08-10 12:03:11,873 * INFO * [116505] atomIncorp_evenness_abund/mean:10,sigma:3/5/5 Finished with 0
2015-08-10 12:03:11,875 * INFO * [116863] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/17
2015-08-10 12:03:13,433 * INFO * [116549] atomIncorp_evenness_abund/mean:10,sigma:3/40/20 Finished with 0
2015-08-10 12:03:13,435 * INFO * [116889] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/8
2015-08-10 12:03:14,624 * INFO * [116597] atomIncorp_evenness_abund/mean:10,sigma:3/40/14 Finished with 0
2015-08-10 12:03:14,626 * INFO * [116926] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/3
2015-08-10 12:03:16,873 * INFO * [116623] atomIncorp_evenness_abund/mean:10,sigma:3/40/7 Finished with 0
2015-08-10 12:03:16,875 * INFO * [116971] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/13
2015-08-10 12:03:19,119 * INFO * [116687] atomIncorp_evenness_abund/mean:10,sigma:3/40/19 Finished with 0
2015-08-10 12:03:19,121 * INFO * [117019] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/10
2015-08-10 12:03:21,775 * INFO * [116735] atomIncorp_evenness_abund/mean:10,sigma:3/40/18 Finished with 0
2015-08-10 12:03:21,777 * INFO * [117069] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/2
2015-08-10 12:03:22,406 * INFO * [116755] atomIncorp_evenness_abund/mean:10,sigma:3/40/15 Finished with 0
2015-08-10 12:03:22,408 * INFO * [117103] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/12
2015-08-10 12:03:24,129 * INFO * [116783] atomIncorp_evenness_abund/mean:10,sigma:3/40/11 Finished with 0
2015-08-10 12:03:24,131 * INFO * [117131] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/1
2015-08-10 12:03:25,094 * INFO * [116809] atomIncorp_evenness_abund/mean:10,sigma:3/40/16 Finished with 0
2015-08-10 12:03:25,096 * INFO * [117149] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/4
2015-08-10 12:03:26,438 * INFO * [116829] atomIncorp_evenness_abund/mean:10,sigma:3/40/9 Finished with 0
2015-08-10 12:03:26,440 * INFO * [117177] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/5
2015-08-10 12:03:27,578 * INFO * [116863] atomIncorp_evenness_abund/mean:10,sigma:3/40/17 Finished with 0
2015-08-10 12:03:27,580 * INFO * [117209] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:3/40/6
2015-08-10 12:03:29,342 * INFO * [116889] atomIncorp_evenness_abund/mean:10,sigma:3/40/8 Finished with 0
2015-08-10 12:03:29,344 * INFO * [117251] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/20
2015-08-10 12:03:30,126 * INFO * [116926] atomIncorp_evenness_abund/mean:10,sigma:3/40/3 Finished with 0
2015-08-10 12:03:30,128 * INFO * [117263] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/14
2015-08-10 12:03:32,036 * INFO * [116971] atomIncorp_evenness_abund/mean:10,sigma:3/40/13 Finished with 0
2015-08-10 12:03:32,038 * INFO * [117303] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/7
2015-08-10 12:03:34,551 * INFO * [117019] atomIncorp_evenness_abund/mean:10,sigma:3/40/10 Finished with 0
2015-08-10 12:03:34,553 * INFO * [117353] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/19
2015-08-10 12:03:36,964 * INFO * [117103] atomIncorp_evenness_abund/mean:10,sigma:3/40/12 Finished with 0
2015-08-10 12:03:36,966 * INFO * [117409] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/18
2015-08-10 12:03:37,530 * INFO * [117069] atomIncorp_evenness_abund/mean:10,sigma:3/40/2 Finished with 0
2015-08-10 12:03:37,533 * INFO * [117427] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/15
2015-08-10 12:03:38,922 * INFO * [117131] atomIncorp_evenness_abund/mean:10,sigma:3/40/1 Finished with 0
2015-08-10 12:03:38,924 * INFO * [117458] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/11
2015-08-10 12:03:40,227 * INFO * [117149] atomIncorp_evenness_abund/mean:10,sigma:3/40/4 Finished with 0
2015-08-10 12:03:40,229 * INFO * [117489] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/16
2015-08-10 12:03:42,122 * INFO * [117177] atomIncorp_evenness_abund/mean:10,sigma:3/40/5 Finished with 0
2015-08-10 12:03:42,124 * INFO * [117525] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/9
2015-08-10 12:03:42,828 * INFO * [117209] atomIncorp_evenness_abund/mean:10,sigma:3/40/6 Finished with 0
2015-08-10 12:03:42,830 * INFO * [117549] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/17
2015-08-10 12:03:44,684 * INFO * [117251] atomIncorp_evenness_abund/mean:10,sigma:1/20/20 Finished with 0
2015-08-10 12:03:44,686 * INFO * [117583] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/8
2015-08-10 12:03:45,325 * INFO * [117263] atomIncorp_evenness_abund/mean:10,sigma:1/20/14 Finished with 0
2015-08-10 12:03:45,327 * INFO * [117603] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/3
2015-08-10 12:03:48,932 * INFO * [117303] atomIncorp_evenness_abund/mean:10,sigma:1/20/7 Finished with 0
2015-08-10 12:03:48,934 * INFO * [117657] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/13
2015-08-10 12:03:49,661 * INFO * [117353] atomIncorp_evenness_abund/mean:10,sigma:1/20/19 Finished with 0
2015-08-10 12:03:49,662 * INFO * [117693] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/10
2015-08-10 12:03:52,988 * INFO * [117427] atomIncorp_evenness_abund/mean:10,sigma:1/20/15 Finished with 0
2015-08-10 12:03:52,990 * INFO * [117757] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/2
2015-08-10 12:03:53,065 * INFO * [117409] atomIncorp_evenness_abund/mean:10,sigma:1/20/18 Finished with 0
2015-08-10 12:03:53,067 * INFO * [117763] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/12
2015-08-10 12:03:53,894 * INFO * [117458] atomIncorp_evenness_abund/mean:10,sigma:1/20/11 Finished with 0
2015-08-10 12:03:53,896 * INFO * [117797] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/1
2015-08-10 12:03:55,663 * INFO * [117489] atomIncorp_evenness_abund/mean:10,sigma:1/20/16 Finished with 0
2015-08-10 12:03:55,665 * INFO * [117821] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/4
2015-08-10 12:03:57,120 * INFO * [117525] atomIncorp_evenness_abund/mean:10,sigma:1/20/9 Finished with 0
2015-08-10 12:03:57,122 * INFO * [117865] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/5
2015-08-10 12:03:57,672 * INFO * [117549] atomIncorp_evenness_abund/mean:10,sigma:1/20/17 Finished with 0
2015-08-10 12:03:57,674 * INFO * [117877] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/20/6
2015-08-10 12:04:00,258 * INFO * [117603] atomIncorp_evenness_abund/mean:10,sigma:1/20/3 Finished with 0
2015-08-10 12:04:00,259 * INFO * [117931] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/20
2015-08-10 12:04:00,330 * INFO * [117583] atomIncorp_evenness_abund/mean:10,sigma:1/20/8 Finished with 0
2015-08-10 12:04:00,332 * INFO * [117943] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/14
2015-08-10 12:04:04,109 * INFO * [117657] atomIncorp_evenness_abund/mean:10,sigma:1/20/13 Finished with 0
2015-08-10 12:04:04,110 * INFO * [118002] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/7
2015-08-10 12:04:04,420 * INFO * [117693] atomIncorp_evenness_abund/mean:10,sigma:1/20/10 Finished with 0
2015-08-10 12:04:04,421 * INFO * [118034] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/19
2015-08-10 12:04:08,079 * INFO * [117757] atomIncorp_evenness_abund/mean:10,sigma:1/20/2 Finished with 0
2015-08-10 12:04:08,081 * INFO * [118109] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/18
2015-08-10 12:04:08,750 * INFO * [117763] atomIncorp_evenness_abund/mean:10,sigma:1/20/12 Finished with 0
2015-08-10 12:04:08,752 * INFO * [118121] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/15
2015-08-10 12:04:09,043 * INFO * [117797] atomIncorp_evenness_abund/mean:10,sigma:1/20/1 Finished with 0
2015-08-10 12:04:09,045 * INFO * [118142] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/11
2015-08-10 12:04:10,744 * INFO * [117821] atomIncorp_evenness_abund/mean:10,sigma:1/20/4 Finished with 0
2015-08-10 12:04:10,746 * INFO * [118168] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/16
2015-08-10 12:04:11,892 * INFO * [117865] atomIncorp_evenness_abund/mean:10,sigma:1/20/5 Finished with 0
2015-08-10 12:04:11,893 * INFO * [118212] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/9
2015-08-10 12:04:12,729 * INFO * [117877] atomIncorp_evenness_abund/mean:10,sigma:1/20/6 Finished with 0
2015-08-10 12:04:12,731 * INFO * [118224] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/17
2015-08-10 12:04:15,188 * INFO * [117931] atomIncorp_evenness_abund/mean:10,sigma:1/30/20 Finished with 0
2015-08-10 12:04:15,190 * INFO * [118264] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/8
2015-08-10 12:04:15,554 * INFO * [117943] atomIncorp_evenness_abund/mean:10,sigma:1/30/14 Finished with 0
2015-08-10 12:04:15,556 * INFO * [118326] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/3
2015-08-10 12:04:19,669 * INFO * [118034] atomIncorp_evenness_abund/mean:10,sigma:1/30/19 Finished with 0
2015-08-10 12:04:19,671 * INFO * [118401] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/13
2015-08-10 12:04:19,675 * INFO * [118002] atomIncorp_evenness_abund/mean:10,sigma:1/30/7 Finished with 0
2015-08-10 12:04:19,677 * INFO * [118403] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/10
2015-08-10 12:04:30,031 * INFO * [118326] atomIncorp_evenness_abund/mean:10,sigma:1/30/3 Finished with 0
2015-08-10 12:04:30,035 * INFO * [118893] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/2
2015-08-10 12:04:34,797 * INFO * [118109] atomIncorp_evenness_abund/mean:10,sigma:1/30/18 Finished with 0
2015-08-10 12:04:34,799 * INFO * [118930] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/12
2015-08-10 12:04:34,799 * INFO * [118142] atomIncorp_evenness_abund/mean:10,sigma:1/30/11 Finished with 0
2015-08-10 12:04:34,801 * INFO * [118931] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/1
2015-08-10 12:04:34,801 * INFO * [118212] atomIncorp_evenness_abund/mean:10,sigma:1/30/9 Finished with 0
2015-08-10 12:04:34,803 * INFO * [118934] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/4
2015-08-10 12:04:34,803 * INFO * [118121] atomIncorp_evenness_abund/mean:10,sigma:1/30/15 Finished with 0
2015-08-10 12:04:34,901 * INFO * [118938] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/5
2015-08-10 12:04:34,935 * INFO * [118168] atomIncorp_evenness_abund/mean:10,sigma:1/30/16 Finished with 0
2015-08-10 12:04:34,937 * INFO * [118972] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/30/6
2015-08-10 12:04:39,018 * INFO * [118224] atomIncorp_evenness_abund/mean:10,sigma:1/30/17 Finished with 0
2015-08-10 12:04:39,020 * INFO * [119274] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/20
2015-08-10 12:04:40,342 * INFO * [118264] atomIncorp_evenness_abund/mean:10,sigma:1/30/8 Finished with 0
2015-08-10 12:04:40,344 * INFO * [119304] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/14
2015-08-10 12:04:42,647 * INFO * [118401] atomIncorp_evenness_abund/mean:10,sigma:1/30/13 Finished with 0
2015-08-10 12:04:42,649 * INFO * [119382] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/7
2015-08-10 12:04:42,696 * INFO * [118403] atomIncorp_evenness_abund/mean:10,sigma:1/30/10 Finished with 0
2015-08-10 12:04:42,698 * INFO * [119394] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/19
2015-08-10 12:04:54,392 * INFO * [118893] atomIncorp_evenness_abund/mean:10,sigma:1/30/2 Finished with 0
2015-08-10 12:04:54,394 * INFO * [119542] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/18
2015-08-10 12:04:54,431 * INFO * [118938] atomIncorp_evenness_abund/mean:10,sigma:1/30/5 Finished with 0
2015-08-10 12:04:54,433 * INFO * [119548] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/15
2015-08-10 12:04:54,437 * INFO * [118931] atomIncorp_evenness_abund/mean:10,sigma:1/30/1 Finished with 0
2015-08-10 12:04:54,439 * INFO * [119550] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/11
2015-08-10 12:04:54,459 * INFO * [118934] atomIncorp_evenness_abund/mean:10,sigma:1/30/4 Finished with 0
2015-08-10 12:04:54,461 * INFO * [119554] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/16
2015-08-10 12:04:54,495 * INFO * [118972] atomIncorp_evenness_abund/mean:10,sigma:1/30/6 Finished with 0
2015-08-10 12:04:54,497 * INFO * [119560] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/9
2015-08-10 12:04:54,497 * INFO * [118930] atomIncorp_evenness_abund/mean:10,sigma:1/30/12 Finished with 0
2015-08-10 12:04:54,498 * INFO * [119561] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/17
2015-08-10 12:04:58,389 * INFO * [119274] atomIncorp_evenness_abund/mean:10,sigma:1/50/20 Finished with 0
2015-08-10 12:04:58,391 * INFO * [119614] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/8
2015-08-10 12:04:58,458 * INFO * [119304] atomIncorp_evenness_abund/mean:10,sigma:1/50/14 Finished with 0
2015-08-10 12:04:58,460 * INFO * [119618] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/3
2015-08-10 12:04:58,716 * INFO * [119394] atomIncorp_evenness_abund/mean:10,sigma:1/50/19 Finished with 0
2015-08-10 12:04:58,717 * INFO * [119638] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/13
2015-08-10 12:04:58,745 * INFO * [119382] atomIncorp_evenness_abund/mean:10,sigma:1/50/7 Finished with 0
2015-08-10 12:04:58,747 * INFO * [119642] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/10
2015-08-10 12:05:10,777 * INFO * [119550] atomIncorp_evenness_abund/mean:10,sigma:1/50/11 Finished with 0
2015-08-10 12:05:10,779 * INFO * [119886] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/2
2015-08-10 12:05:10,876 * INFO * [119560] atomIncorp_evenness_abund/mean:10,sigma:1/50/9 Finished with 0
2015-08-10 12:05:10,878 * INFO * [119890] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/12
2015-08-10 12:05:10,904 * INFO * [119561] atomIncorp_evenness_abund/mean:10,sigma:1/50/17 Finished with 0
2015-08-10 12:05:10,905 * INFO * [119906] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/1
2015-08-10 12:05:10,921 * INFO * [119554] atomIncorp_evenness_abund/mean:10,sigma:1/50/16 Finished with 0
2015-08-10 12:05:10,923 * INFO * [119914] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/4
2015-08-10 12:05:10,969 * INFO * [119542] atomIncorp_evenness_abund/mean:10,sigma:1/50/18 Finished with 0
2015-08-10 12:05:10,971 * INFO * [119929] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/5
2015-08-10 12:05:11,047 * INFO * [119548] atomIncorp_evenness_abund/mean:10,sigma:1/50/15 Finished with 0
2015-08-10 12:05:11,049 * INFO * [119947] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/50/6
2015-08-10 12:05:14,493 * INFO * [119618] atomIncorp_evenness_abund/mean:10,sigma:1/50/3 Finished with 0
2015-08-10 12:05:14,495 * INFO * [119959] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/20
2015-08-10 12:05:14,794 * INFO * [119642] atomIncorp_evenness_abund/mean:10,sigma:1/50/10 Finished with 0
2015-08-10 12:05:14,796 * INFO * [119971] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/14
2015-08-10 12:05:14,924 * INFO * [119614] atomIncorp_evenness_abund/mean:10,sigma:1/50/8 Finished with 0
2015-08-10 12:05:14,926 * INFO * [119983] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/7
2015-08-10 12:05:14,995 * INFO * [119638] atomIncorp_evenness_abund/mean:10,sigma:1/50/13 Finished with 0
2015-08-10 12:05:14,997 * INFO * [119988] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/19
2015-08-10 12:05:34,830 * INFO * [119890] atomIncorp_evenness_abund/mean:10,sigma:1/50/12 Finished with 0
2015-08-10 12:05:34,831 * INFO * [120227] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/18
2015-08-10 12:05:36,233 * INFO * [119947] atomIncorp_evenness_abund/mean:10,sigma:1/50/6 Finished with 0
2015-08-10 12:05:36,235 * INFO * [120241] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/15
2015-08-10 12:05:36,248 * INFO * [119906] atomIncorp_evenness_abund/mean:10,sigma:1/50/1 Finished with 0
2015-08-10 12:05:36,250 * INFO * [120247] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/11
2015-08-10 12:05:36,259 * INFO * [119914] atomIncorp_evenness_abund/mean:10,sigma:1/50/4 Finished with 0
2015-08-10 12:05:36,260 * INFO * [120252] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/16
2015-08-10 12:05:36,261 * INFO * [119929] atomIncorp_evenness_abund/mean:10,sigma:1/50/5 Finished with 0
2015-08-10 12:05:36,262 * INFO * [120255] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/9
2015-08-10 12:05:36,302 * INFO * [119886] atomIncorp_evenness_abund/mean:10,sigma:1/50/2 Finished with 0
2015-08-10 12:05:36,304 * INFO * [120272] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/17
2015-08-10 12:05:38,198 * INFO * [119971] atomIncorp_evenness_abund/mean:10,sigma:1/75/14 Finished with 0
2015-08-10 12:05:38,200 * INFO * [120299] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/8
2015-08-10 12:05:38,767 * INFO * [119988] atomIncorp_evenness_abund/mean:10,sigma:1/75/19 Finished with 0
2015-08-10 12:05:38,769 * INFO * [120312] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/3
2015-08-10 12:05:38,782 * INFO * [119959] atomIncorp_evenness_abund/mean:10,sigma:1/75/20 Finished with 0
2015-08-10 12:05:38,784 * INFO * [120317] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/13
2015-08-10 12:05:38,792 * INFO * [119983] atomIncorp_evenness_abund/mean:10,sigma:1/75/7 Finished with 0
2015-08-10 12:05:38,794 * INFO * [120319] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/10
2015-08-10 12:05:50,293 * INFO * [120227] atomIncorp_evenness_abund/mean:10,sigma:1/75/18 Finished with 0
2015-08-10 12:05:50,295 * INFO * [120551] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/2
2015-08-10 12:05:51,301 * INFO * [120247] atomIncorp_evenness_abund/mean:10,sigma:1/75/11 Finished with 0
2015-08-10 12:05:51,303 * INFO * [120579] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/12
2015-08-10 12:05:51,594 * INFO * [120255] atomIncorp_evenness_abund/mean:10,sigma:1/75/9 Finished with 0
2015-08-10 12:05:51,596 * INFO * [120591] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/1
2015-08-10 12:05:52,046 * INFO * [120252] atomIncorp_evenness_abund/mean:10,sigma:1/75/16 Finished with 0
2015-08-10 12:05:52,048 * INFO * [120603] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/4
2015-08-10 12:05:52,092 * INFO * [120272] atomIncorp_evenness_abund/mean:10,sigma:1/75/17 Finished with 0
2015-08-10 12:05:52,094 * INFO * [120615] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/5
2015-08-10 12:05:52,163 * INFO * [120241] atomIncorp_evenness_abund/mean:10,sigma:1/75/15 Finished with 0
2015-08-10 12:05:52,165 * INFO * [120627] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/75/6
2015-08-10 12:05:54,003 * INFO * [120312] atomIncorp_evenness_abund/mean:10,sigma:1/75/3 Finished with 0
2015-08-10 12:05:54,005 * INFO * [120639] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/20
2015-08-10 12:05:54,277 * INFO * [120299] atomIncorp_evenness_abund/mean:10,sigma:1/75/8 Finished with 0
2015-08-10 12:05:54,279 * INFO * [120651] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/14
2015-08-10 12:05:54,461 * INFO * [120317] atomIncorp_evenness_abund/mean:10,sigma:1/75/13 Finished with 0
2015-08-10 12:05:54,463 * INFO * [120663] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/7
2015-08-10 12:05:54,598 * INFO * [120319] atomIncorp_evenness_abund/mean:10,sigma:1/75/10 Finished with 0
2015-08-10 12:05:54,600 * INFO * [120675] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/19
2015-08-10 12:06:06,607 * INFO * [120551] atomIncorp_evenness_abund/mean:10,sigma:1/75/2 Finished with 0
2015-08-10 12:06:06,609 * INFO * [120907] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/18
2015-08-10 12:06:07,225 * INFO * [120603] atomIncorp_evenness_abund/mean:10,sigma:1/75/4 Finished with 0
2015-08-10 12:06:07,227 * INFO * [120920] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/15
2015-08-10 12:06:07,330 * INFO * [120579] atomIncorp_evenness_abund/mean:10,sigma:1/75/12 Finished with 0
2015-08-10 12:06:07,332 * INFO * [120932] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/11
2015-08-10 12:06:07,577 * INFO * [120591] atomIncorp_evenness_abund/mean:10,sigma:1/75/1 Finished with 0
2015-08-10 12:06:07,579 * INFO * [120944] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/16
2015-08-10 12:06:08,008 * INFO * [120615] atomIncorp_evenness_abund/mean:10,sigma:1/75/5 Finished with 0
2015-08-10 12:06:08,010 * INFO * [120956] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/9
2015-08-10 12:06:08,118 * INFO * [120627] atomIncorp_evenness_abund/mean:10,sigma:1/75/6 Finished with 0
2015-08-10 12:06:08,120 * INFO * [120968] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/17
2015-08-10 12:06:09,755 * INFO * [120663] atomIncorp_evenness_abund/mean:10,sigma:1/15/7 Finished with 0
2015-08-10 12:06:09,757 * INFO * [120980] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/8
2015-08-10 12:06:15,069 * INFO * [120651] atomIncorp_evenness_abund/mean:10,sigma:1/15/14 Finished with 0
2015-08-10 12:06:15,070 * INFO * [121036] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/3
2015-08-10 12:06:15,070 * INFO * [120639] atomIncorp_evenness_abund/mean:10,sigma:1/15/20 Finished with 0
2015-08-10 12:06:15,072 * INFO * [121037] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/13
2015-08-10 12:06:15,088 * INFO * [120675] atomIncorp_evenness_abund/mean:10,sigma:1/15/19 Finished with 0
2015-08-10 12:06:15,090 * INFO * [121042] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/10
2015-08-10 12:06:23,711 * INFO * [120920] atomIncorp_evenness_abund/mean:10,sigma:1/15/15 Finished with 0
2015-08-10 12:06:23,713 * INFO * [121229] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/2
2015-08-10 12:06:23,740 * INFO * [120932] atomIncorp_evenness_abund/mean:10,sigma:1/15/11 Finished with 0
2015-08-10 12:06:23,742 * INFO * [121233] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/12
2015-08-10 12:06:23,797 * INFO * [120907] atomIncorp_evenness_abund/mean:10,sigma:1/15/18 Finished with 0
2015-08-10 12:06:23,799 * INFO * [121237] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/1
2015-08-10 12:06:23,980 * INFO * [120944] atomIncorp_evenness_abund/mean:10,sigma:1/15/16 Finished with 0
2015-08-10 12:06:23,981 * INFO * [121265] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/4
2015-08-10 12:06:24,071 * INFO * [120968] atomIncorp_evenness_abund/mean:10,sigma:1/15/17 Finished with 0
2015-08-10 12:06:24,073 * INFO * [121277] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/5
2015-08-10 12:06:24,462 * INFO * [120956] atomIncorp_evenness_abund/mean:10,sigma:1/15/9 Finished with 0
2015-08-10 12:06:24,464 * INFO * [121289] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/15/6
2015-08-10 12:06:25,737 * INFO * [120980] atomIncorp_evenness_abund/mean:10,sigma:1/15/8 Finished with 0
2015-08-10 12:06:25,739 * INFO * [121301] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/20
2015-08-10 12:06:31,510 * INFO * [121037] atomIncorp_evenness_abund/mean:10,sigma:1/15/13 Finished with 0
2015-08-10 12:06:31,512 * INFO * [121379] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/14
2015-08-10 12:06:31,578 * INFO * [121036] atomIncorp_evenness_abund/mean:10,sigma:1/15/3 Finished with 0
2015-08-10 12:06:31,580 * INFO * [121407] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/7
2015-08-10 12:06:31,697 * INFO * [121042] atomIncorp_evenness_abund/mean:10,sigma:1/15/10 Finished with 0
2015-08-10 12:06:31,699 * INFO * [121429] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/19
2015-08-10 12:06:40,129 * INFO * [121233] atomIncorp_evenness_abund/mean:10,sigma:1/15/12 Finished with 0
2015-08-10 12:06:40,130 * INFO * [121580] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/18
2015-08-10 12:06:40,286 * INFO * [121229] atomIncorp_evenness_abund/mean:10,sigma:1/15/2 Finished with 0
2015-08-10 12:06:40,288 * INFO * [121610] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/15
2015-08-10 12:06:40,291 * INFO * [121237] atomIncorp_evenness_abund/mean:10,sigma:1/15/1 Finished with 0
2015-08-10 12:06:40,293 * INFO * [121612] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/11
2015-08-10 12:06:40,385 * INFO * [121265] atomIncorp_evenness_abund/mean:10,sigma:1/15/4 Finished with 0
2015-08-10 12:06:40,387 * INFO * [121624] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/16
2015-08-10 12:06:40,686 * INFO * [121277] atomIncorp_evenness_abund/mean:10,sigma:1/15/5 Finished with 0
2015-08-10 12:06:40,688 * INFO * [121644] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/9
2015-08-10 12:06:40,829 * INFO * [121289] atomIncorp_evenness_abund/mean:10,sigma:1/15/6 Finished with 0
2015-08-10 12:06:40,831 * INFO * [121650] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/17
2015-08-10 12:06:48,083 * INFO * [121301] atomIncorp_evenness_abund/mean:10,sigma:1/0/20 Finished with 0
2015-08-10 12:06:48,084 * INFO * [121714] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/8
2015-08-10 12:06:53,317 * INFO * [121407] atomIncorp_evenness_abund/mean:10,sigma:1/0/7 Finished with 0
2015-08-10 12:06:53,324 * INFO * [121824] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/3
2015-08-10 12:06:53,899 * INFO * [121429] atomIncorp_evenness_abund/mean:10,sigma:1/0/19 Finished with 0
2015-08-10 12:06:53,901 * INFO * [121868] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/13
2015-08-10 12:06:53,960 * INFO * [121379] atomIncorp_evenness_abund/mean:10,sigma:1/0/14 Finished with 0
2015-08-10 12:06:53,962 * INFO * [121872] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/10
2015-08-10 12:06:57,447 * INFO * [121644] atomIncorp_evenness_abund/mean:10,sigma:1/0/9 Finished with 0
2015-08-10 12:06:57,449 * INFO * [121906] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/2
2015-08-10 12:06:59,090 * INFO * [121610] atomIncorp_evenness_abund/mean:10,sigma:1/0/15 Finished with 0
2015-08-10 12:06:59,092 * INFO * [121926] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/12
2015-08-10 12:06:59,305 * INFO * [121612] atomIncorp_evenness_abund/mean:10,sigma:1/0/11 Finished with 0
2015-08-10 12:06:59,307 * INFO * [121938] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/1
2015-08-10 12:06:59,418 * INFO * [121624] atomIncorp_evenness_abund/mean:10,sigma:1/0/16 Finished with 0
2015-08-10 12:06:59,425 * INFO * [121953] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/4
2015-08-10 12:06:59,468 * INFO * [121580] atomIncorp_evenness_abund/mean:10,sigma:1/0/18 Finished with 0
2015-08-10 12:06:59,473 * INFO * [121968] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/5
2015-08-10 12:07:00,232 * INFO * [121650] atomIncorp_evenness_abund/mean:10,sigma:1/0/17 Finished with 0
2015-08-10 12:07:00,234 * INFO * [121980] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/0/6
2015-08-10 12:07:10,154 * INFO * [121714] atomIncorp_evenness_abund/mean:10,sigma:1/0/8 Finished with 0
2015-08-10 12:07:10,156 * INFO * [122128] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/20
2015-08-10 12:07:13,847 * INFO * [121824] atomIncorp_evenness_abund/mean:10,sigma:1/0/3 Finished with 0
2015-08-10 12:07:13,849 * INFO * [122164] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/14
2015-08-10 12:07:14,982 * INFO * [121868] atomIncorp_evenness_abund/mean:10,sigma:1/0/13 Finished with 0
2015-08-10 12:07:14,984 * INFO * [122192] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/7
2015-08-10 12:07:16,406 * INFO * [121872] atomIncorp_evenness_abund/mean:10,sigma:1/0/10 Finished with 0
2015-08-10 12:07:16,409 * INFO * [122228] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/19
2015-08-10 12:07:18,997 * INFO * [121953] atomIncorp_evenness_abund/mean:10,sigma:1/0/4 Finished with 0
2015-08-10 12:07:18,999 * INFO * [122246] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/18
2015-08-10 12:07:19,671 * INFO * [121906] atomIncorp_evenness_abund/mean:10,sigma:1/0/2 Finished with 0
2015-08-10 12:07:19,674 * INFO * [122258] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/15
2015-08-10 12:07:20,200 * INFO * [121980] atomIncorp_evenness_abund/mean:10,sigma:1/0/6 Finished with 0
2015-08-10 12:07:20,205 * INFO * [122272] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/11
2015-08-10 12:07:20,218 * INFO * [121968] atomIncorp_evenness_abund/mean:10,sigma:1/0/5 Finished with 0
2015-08-10 12:07:20,220 * INFO * [122276] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/16
2015-08-10 12:07:20,352 * INFO * [121938] atomIncorp_evenness_abund/mean:10,sigma:1/0/1 Finished with 0
2015-08-10 12:07:20,354 * INFO * [122294] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/9
2015-08-10 12:07:20,630 * INFO * [121926] atomIncorp_evenness_abund/mean:10,sigma:1/0/12 Finished with 0
2015-08-10 12:07:20,632 * INFO * [122309] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/17
2015-08-10 12:07:32,685 * INFO * [122128] atomIncorp_evenness_abund/mean:10,sigma:1/100/20 Finished with 0
2015-08-10 12:07:32,689 * INFO * [122484] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/8
2015-08-10 12:07:34,280 * INFO * [122164] atomIncorp_evenness_abund/mean:10,sigma:1/100/14 Finished with 0
2015-08-10 12:07:34,282 * INFO * [122520] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/3
2015-08-10 12:07:37,114 * INFO * [122192] atomIncorp_evenness_abund/mean:10,sigma:1/100/7 Finished with 0
2015-08-10 12:07:37,116 * INFO * [122556] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/13
2015-08-10 12:07:37,735 * INFO * [122246] atomIncorp_evenness_abund/mean:10,sigma:1/100/18 Finished with 0
2015-08-10 12:07:37,738 * INFO * [122568] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/10
2015-08-10 12:07:38,194 * INFO * [122228] atomIncorp_evenness_abund/mean:10,sigma:1/100/19 Finished with 0
2015-08-10 12:07:38,197 * INFO * [122580] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/2
2015-08-10 12:07:40,021 * INFO * [122272] atomIncorp_evenness_abund/mean:10,sigma:1/100/11 Finished with 0
2015-08-10 12:07:40,023 * INFO * [122598] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/12
2015-08-10 12:07:40,093 * INFO * [122276] atomIncorp_evenness_abund/mean:10,sigma:1/100/16 Finished with 0
2015-08-10 12:07:40,095 * INFO * [122610] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/1
2015-08-10 12:07:40,576 * INFO * [122294] atomIncorp_evenness_abund/mean:10,sigma:1/100/9 Finished with 0
2015-08-10 12:07:40,578 * INFO * [122622] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/4
2015-08-10 12:07:41,068 * INFO * [122258] atomIncorp_evenness_abund/mean:10,sigma:1/100/15 Finished with 0
2015-08-10 12:07:41,070 * INFO * [122640] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/5
2015-08-10 12:07:41,367 * INFO * [122309] atomIncorp_evenness_abund/mean:10,sigma:1/100/17 Finished with 0
2015-08-10 12:07:41,369 * INFO * [122654] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/100/6
2015-08-10 12:07:52,235 * INFO * [122484] atomIncorp_evenness_abund/mean:10,sigma:1/100/8 Finished with 0
2015-08-10 12:07:52,237 * INFO * [122816] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/20
2015-08-10 12:07:53,933 * INFO * [122520] atomIncorp_evenness_abund/mean:10,sigma:1/100/3 Finished with 0
2015-08-10 12:07:53,936 * INFO * [122844] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/14
2015-08-10 12:07:55,875 * INFO * [122556] atomIncorp_evenness_abund/mean:10,sigma:1/100/13 Finished with 0
2015-08-10 12:07:55,877 * INFO * [122880] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/7
2015-08-10 12:07:56,973 * INFO * [122568] atomIncorp_evenness_abund/mean:10,sigma:1/100/10 Finished with 0
2015-08-10 12:07:56,974 * INFO * [122900] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/19
2015-08-10 12:07:57,872 * INFO * [122580] atomIncorp_evenness_abund/mean:10,sigma:1/100/2 Finished with 0
2015-08-10 12:07:57,874 * INFO * [122943] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/18
2015-08-10 12:08:00,478 * INFO * [122622] atomIncorp_evenness_abund/mean:10,sigma:1/100/4 Finished with 0
2015-08-10 12:08:00,480 * INFO * [122967] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/15
2015-08-10 12:08:00,919 * INFO * [122610] atomIncorp_evenness_abund/mean:10,sigma:1/100/1 Finished with 0
2015-08-10 12:08:00,922 * INFO * [122979] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/11
2015-08-10 12:08:01,016 * INFO * [122598] atomIncorp_evenness_abund/mean:10,sigma:1/100/12 Finished with 0
2015-08-10 12:08:01,019 * INFO * [122991] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/16
2015-08-10 12:08:01,507 * INFO * [122640] atomIncorp_evenness_abund/mean:10,sigma:1/100/5 Finished with 0
2015-08-10 12:08:01,513 * INFO * [123019] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/9
2015-08-10 12:08:01,661 * INFO * [122654] atomIncorp_evenness_abund/mean:10,sigma:1/100/6 Finished with 0
2015-08-10 12:08:01,663 * INFO * [123031] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/17
2015-08-10 12:08:11,829 * INFO * [122844] atomIncorp_evenness_abund/mean:10,sigma:1/10/14 Finished with 0
2015-08-10 12:08:11,831 * INFO * [123179] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/8
2015-08-10 12:08:12,731 * INFO * [122816] atomIncorp_evenness_abund/mean:10,sigma:1/10/20 Finished with 0
2015-08-10 12:08:12,733 * INFO * [123191] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/3
2015-08-10 12:08:15,619 * INFO * [122880] atomIncorp_evenness_abund/mean:10,sigma:1/10/7 Finished with 0
2015-08-10 12:08:15,625 * INFO * [123221] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/13
2015-08-10 12:08:18,931 * INFO * [122900] atomIncorp_evenness_abund/mean:10,sigma:1/10/19 Finished with 0
2015-08-10 12:08:18,937 * INFO * [123271] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/10
2015-08-10 12:08:19,056 * INFO * [122943] atomIncorp_evenness_abund/mean:10,sigma:1/10/18 Finished with 0
2015-08-10 12:08:19,060 * INFO * [123283] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/2
2015-08-10 12:08:21,256 * INFO * [123031] atomIncorp_evenness_abund/mean:10,sigma:1/10/17 Finished with 0
2015-08-10 12:08:21,258 * INFO * [123307] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/12
2015-08-10 12:08:21,423 * INFO * [122967] atomIncorp_evenness_abund/mean:10,sigma:1/10/15 Finished with 0
2015-08-10 12:08:21,426 * INFO * [123319] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/1
2015-08-10 12:08:21,519 * INFO * [123019] atomIncorp_evenness_abund/mean:10,sigma:1/10/9 Finished with 0
2015-08-10 12:08:21,521 * INFO * [123331] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/4
2015-08-10 12:08:22,158 * INFO * [122979] atomIncorp_evenness_abund/mean:10,sigma:1/10/11 Finished with 0
2015-08-10 12:08:22,160 * INFO * [123343] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/5
2015-08-10 12:08:23,492 * INFO * [122991] atomIncorp_evenness_abund/mean:10,sigma:1/10/16 Finished with 0
2015-08-10 12:08:23,494 * INFO * [123377] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/10/6
2015-08-10 12:08:33,827 * INFO * [123179] atomIncorp_evenness_abund/mean:10,sigma:1/10/8 Finished with 0
2015-08-10 12:08:33,829 * INFO * [123511] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/20
2015-08-10 12:08:34,173 * INFO * [123191] atomIncorp_evenness_abund/mean:10,sigma:1/10/3 Finished with 0
2015-08-10 12:08:34,176 * INFO * [123523] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/14
2015-08-10 12:08:36,667 * INFO * [123221] atomIncorp_evenness_abund/mean:10,sigma:1/10/13 Finished with 0
2015-08-10 12:08:36,669 * INFO * [123559] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/7
2015-08-10 12:08:40,886 * INFO * [123271] atomIncorp_evenness_abund/mean:10,sigma:1/10/10 Finished with 0
2015-08-10 12:08:40,888 * INFO * [123611] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/19
2015-08-10 12:08:41,031 * INFO * [123283] atomIncorp_evenness_abund/mean:10,sigma:1/10/2 Finished with 0
2015-08-10 12:08:41,034 * INFO * [123623] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/18
2015-08-10 12:08:42,694 * INFO * [123343] atomIncorp_evenness_abund/mean:10,sigma:1/10/5 Finished with 0
2015-08-10 12:08:42,696 * INFO * [123647] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/15
2015-08-10 12:08:42,991 * INFO * [123307] atomIncorp_evenness_abund/mean:10,sigma:1/10/12 Finished with 0
2015-08-10 12:08:42,997 * INFO * [123660] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/11
2015-08-10 12:08:43,016 * INFO * [123319] atomIncorp_evenness_abund/mean:10,sigma:1/10/1 Finished with 0
2015-08-10 12:08:43,018 * INFO * [123663] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/16
2015-08-10 12:08:44,512 * INFO * [123331] atomIncorp_evenness_abund/mean:10,sigma:1/10/4 Finished with 0
2015-08-10 12:08:44,514 * INFO * [123691] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/9
2015-08-10 12:08:45,771 * INFO * [123377] atomIncorp_evenness_abund/mean:10,sigma:1/10/6 Finished with 0
2015-08-10 12:08:45,773 * INFO * [123717] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/17
2015-08-10 12:08:53,565 * INFO * [123523] atomIncorp_evenness_abund/mean:10,sigma:1/5/14 Finished with 0
2015-08-10 12:08:53,567 * INFO * [123923] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/8
2015-08-10 12:08:53,702 * INFO * [123511] atomIncorp_evenness_abund/mean:10,sigma:1/5/20 Finished with 0
2015-08-10 12:08:53,704 * INFO * [123935] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/3
2015-08-10 12:08:55,810 * INFO * [123559] atomIncorp_evenness_abund/mean:10,sigma:1/5/7 Finished with 0
2015-08-10 12:08:55,812 * INFO * [123979] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/13
2015-08-10 12:08:58,994 * INFO * [123623] atomIncorp_evenness_abund/mean:10,sigma:1/5/18 Finished with 0
2015-08-10 12:08:58,996 * INFO * [124039] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/10
2015-08-10 12:08:59,097 * INFO * [123611] atomIncorp_evenness_abund/mean:10,sigma:1/5/19 Finished with 0
2015-08-10 12:08:59,098 * INFO * [124051] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/2
2015-08-10 12:08:59,576 * INFO * [123663] atomIncorp_evenness_abund/mean:10,sigma:1/5/16 Finished with 0
2015-08-10 12:08:59,578 * INFO * [124063] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/12
2015-08-10 12:09:00,421 * INFO * [123647] atomIncorp_evenness_abund/mean:10,sigma:1/5/15 Finished with 0
2015-08-10 12:09:00,423 * INFO * [124075] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/1
2015-08-10 12:09:00,454 * INFO * [123691] atomIncorp_evenness_abund/mean:10,sigma:1/5/9 Finished with 0
2015-08-10 12:09:00,457 * INFO * [124082] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/4
2015-08-10 12:09:01,185 * INFO * [123660] atomIncorp_evenness_abund/mean:10,sigma:1/5/11 Finished with 0
2015-08-10 12:09:01,187 * INFO * [124121] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/5
2015-08-10 12:09:02,870 * INFO * [123717] atomIncorp_evenness_abund/mean:10,sigma:1/5/17 Finished with 0
2015-08-10 12:09:02,872 * INFO * [124133] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/5/6
2015-08-10 12:09:08,854 * INFO * [123923] atomIncorp_evenness_abund/mean:10,sigma:1/5/8 Finished with 0
2015-08-10 12:09:08,855 * INFO * [124267] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/20
2015-08-10 12:09:09,239 * INFO * [123935] atomIncorp_evenness_abund/mean:10,sigma:1/5/3 Finished with 0
2015-08-10 12:09:09,241 * INFO * [124279] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/14
2015-08-10 12:09:11,436 * INFO * [123979] atomIncorp_evenness_abund/mean:10,sigma:1/5/13 Finished with 0
2015-08-10 12:09:11,438 * INFO * [124323] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/7
2015-08-10 12:09:15,231 * INFO * [124051] atomIncorp_evenness_abund/mean:10,sigma:1/5/2 Finished with 0
2015-08-10 12:09:15,233 * INFO * [124388] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/19
2015-08-10 12:09:16,709 * INFO * [124063] atomIncorp_evenness_abund/mean:10,sigma:1/5/12 Finished with 0
2015-08-10 12:09:16,712 * INFO * [124414] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/18
2015-08-10 12:09:16,777 * INFO * [124039] atomIncorp_evenness_abund/mean:10,sigma:1/5/10 Finished with 0
2015-08-10 12:09:16,779 * INFO * [124426] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/15
2015-08-10 12:09:17,295 * INFO * [124075] atomIncorp_evenness_abund/mean:10,sigma:1/5/1 Finished with 0
2015-08-10 12:09:17,298 * INFO * [124438] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/11
2015-08-10 12:09:17,980 * INFO * [124082] atomIncorp_evenness_abund/mean:10,sigma:1/5/4 Finished with 0
2015-08-10 12:09:17,982 * INFO * [124458] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/16
2015-08-10 12:09:18,433 * INFO * [124121] atomIncorp_evenness_abund/mean:10,sigma:1/5/5 Finished with 0
2015-08-10 12:09:18,435 * INFO * [124470] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/9
2015-08-10 12:09:21,462 * INFO * [124133] atomIncorp_evenness_abund/mean:10,sigma:1/5/6 Finished with 0
2015-08-10 12:09:21,464 * INFO * [124496] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/17
2015-08-10 12:09:26,579 * INFO * [124267] atomIncorp_evenness_abund/mean:10,sigma:1/40/20 Finished with 0
2015-08-10 12:09:26,581 * INFO * [124624] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/8
2015-08-10 12:09:27,230 * INFO * [124279] atomIncorp_evenness_abund/mean:10,sigma:1/40/14 Finished with 0
2015-08-10 12:09:27,231 * INFO * [124642] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/3
2015-08-10 12:09:29,744 * INFO * [124323] atomIncorp_evenness_abund/mean:10,sigma:1/40/7 Finished with 0
2015-08-10 12:09:29,746 * INFO * [124686] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/13
2015-08-10 12:09:32,862 * INFO * [124388] atomIncorp_evenness_abund/mean:10,sigma:1/40/19 Finished with 0
2015-08-10 12:09:32,864 * INFO * [124734] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/10
2015-08-10 12:09:33,398 * INFO * [124438] atomIncorp_evenness_abund/mean:10,sigma:1/40/11 Finished with 0
2015-08-10 12:09:33,400 * INFO * [124754] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/2
2015-08-10 12:09:33,417 * INFO * [124414] atomIncorp_evenness_abund/mean:10,sigma:1/40/18 Finished with 0
2015-08-10 12:09:33,419 * INFO * [124760] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/12
2015-08-10 12:09:34,256 * INFO * [124470] atomIncorp_evenness_abund/mean:10,sigma:1/40/9 Finished with 0
2015-08-10 12:09:34,258 * INFO * [124786] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/1
2015-08-10 12:09:34,592 * INFO * [124458] atomIncorp_evenness_abund/mean:10,sigma:1/40/16 Finished with 0
2015-08-10 12:09:34,593 * INFO * [124802] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/4
2015-08-10 12:09:34,667 * INFO * [124426] atomIncorp_evenness_abund/mean:10,sigma:1/40/15 Finished with 0
2015-08-10 12:09:34,669 * INFO * [124818] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/5
2015-08-10 12:09:37,062 * INFO * [124496] atomIncorp_evenness_abund/mean:10,sigma:1/40/17 Finished with 0
2015-08-10 12:09:37,064 * INFO * [124836] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:1/40/6
2015-08-10 12:09:41,309 * INFO * [124624] atomIncorp_evenness_abund/mean:10,sigma:1/40/8 Finished with 0
2015-08-10 12:09:41,311 * INFO * [124956] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/20
2015-08-10 12:09:42,808 * INFO * [124642] atomIncorp_evenness_abund/mean:10,sigma:1/40/3 Finished with 0
2015-08-10 12:09:42,810 * INFO * [124998] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/14
2015-08-10 12:09:45,450 * INFO * [124686] atomIncorp_evenness_abund/mean:10,sigma:1/40/13 Finished with 0
2015-08-10 12:09:45,452 * INFO * [125045] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/7
2015-08-10 12:09:47,988 * INFO * [124734] atomIncorp_evenness_abund/mean:10,sigma:1/40/10 Finished with 0
2015-08-10 12:09:47,990 * INFO * [125087] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/19
2015-08-10 12:09:48,931 * INFO * [124760] atomIncorp_evenness_abund/mean:10,sigma:1/40/12 Finished with 0
2015-08-10 12:09:48,933 * INFO * [125121] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/18
2015-08-10 12:09:49,144 * INFO * [124754] atomIncorp_evenness_abund/mean:10,sigma:1/40/2 Finished with 0
2015-08-10 12:09:49,146 * INFO * [125133] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/15
2015-08-10 12:09:50,048 * INFO * [124786] atomIncorp_evenness_abund/mean:10,sigma:1/40/1 Finished with 0
2015-08-10 12:09:50,050 * INFO * [125145] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/11
2015-08-10 12:09:50,460 * INFO * [124818] atomIncorp_evenness_abund/mean:10,sigma:1/40/5 Finished with 0
2015-08-10 12:09:50,462 * INFO * [125165] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/16
2015-08-10 12:09:50,738 * INFO * [124802] atomIncorp_evenness_abund/mean:10,sigma:1/40/4 Finished with 0
2015-08-10 12:09:50,740 * INFO * [125177] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/9
2015-08-10 12:09:52,940 * INFO * [124836] atomIncorp_evenness_abund/mean:10,sigma:1/40/6 Finished with 0
2015-08-10 12:09:52,942 * INFO * [125196] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/17
2015-08-10 12:09:57,269 * INFO * [124956] atomIncorp_evenness_abund/mean:10,sigma:2/20/20 Finished with 0
2015-08-10 12:09:57,271 * INFO * [125307] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/8
2015-08-10 12:09:58,767 * INFO * [124998] atomIncorp_evenness_abund/mean:10,sigma:2/20/14 Finished with 0
2015-08-10 12:09:58,768 * INFO * [125341] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/3
2015-08-10 12:10:01,396 * INFO * [125045] atomIncorp_evenness_abund/mean:10,sigma:2/20/7 Finished with 0
2015-08-10 12:10:01,398 * INFO * [125393] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/13
2015-08-10 12:10:04,058 * INFO * [125087] atomIncorp_evenness_abund/mean:10,sigma:2/20/19 Finished with 0
2015-08-10 12:10:04,059 * INFO * [125443] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/10
2015-08-10 12:10:04,612 * INFO * [125145] atomIncorp_evenness_abund/mean:10,sigma:2/20/11 Finished with 0
2015-08-10 12:10:04,613 * INFO * [125461] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/2
2015-08-10 12:10:05,011 * INFO * [125121] atomIncorp_evenness_abund/mean:10,sigma:2/20/18 Finished with 0
2015-08-10 12:10:05,013 * INFO * [125489] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/12
2015-08-10 12:10:05,205 * INFO * [125133] atomIncorp_evenness_abund/mean:10,sigma:2/20/15 Finished with 0
2015-08-10 12:10:05,206 * INFO * [125501] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/1
2015-08-10 12:10:06,608 * INFO * [125165] atomIncorp_evenness_abund/mean:10,sigma:2/20/16 Finished with 0
2015-08-10 12:10:06,610 * INFO * [125521] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/4
2015-08-10 12:10:06,879 * INFO * [125177] atomIncorp_evenness_abund/mean:10,sigma:2/20/9 Finished with 0
2015-08-10 12:10:06,881 * INFO * [125533] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/5
2015-08-10 12:10:09,054 * INFO * [125196] atomIncorp_evenness_abund/mean:10,sigma:2/20/17 Finished with 0
2015-08-10 12:10:09,056 * INFO * [125551] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/20/6
2015-08-10 12:10:13,509 * INFO * [125307] atomIncorp_evenness_abund/mean:10,sigma:2/20/8 Finished with 0
2015-08-10 12:10:13,510 * INFO * [125663] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/20
2015-08-10 12:10:14,995 * INFO * [125341] atomIncorp_evenness_abund/mean:10,sigma:2/20/3 Finished with 0
2015-08-10 12:10:14,997 * INFO * [125697] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/14
2015-08-10 12:10:17,574 * INFO * [125393] atomIncorp_evenness_abund/mean:10,sigma:2/20/13 Finished with 0
2015-08-10 12:10:17,576 * INFO * [125752] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/7
2015-08-10 12:10:20,295 * INFO * [125443] atomIncorp_evenness_abund/mean:10,sigma:2/20/10 Finished with 0
2015-08-10 12:10:20,297 * INFO * [125786] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/19
2015-08-10 12:10:20,860 * INFO * [125461] atomIncorp_evenness_abund/mean:10,sigma:2/20/2 Finished with 0
2015-08-10 12:10:20,862 * INFO * [125804] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/18
2015-08-10 12:10:21,186 * INFO * [125489] atomIncorp_evenness_abund/mean:10,sigma:2/20/12 Finished with 0
2015-08-10 12:10:21,188 * INFO * [125824] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/15
2015-08-10 12:10:21,372 * INFO * [125501] atomIncorp_evenness_abund/mean:10,sigma:2/20/1 Finished with 0
2015-08-10 12:10:21,374 * INFO * [125844] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/11
2015-08-10 12:10:22,799 * INFO * [125521] atomIncorp_evenness_abund/mean:10,sigma:2/20/4 Finished with 0
2015-08-10 12:10:22,801 * INFO * [125864] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/16
2015-08-10 12:10:23,087 * INFO * [125533] atomIncorp_evenness_abund/mean:10,sigma:2/20/5 Finished with 0
2015-08-10 12:10:23,089 * INFO * [125876] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/9
2015-08-10 12:10:25,221 * INFO * [125551] atomIncorp_evenness_abund/mean:10,sigma:2/20/6 Finished with 0
2015-08-10 12:10:25,223 * INFO * [125894] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/17
2015-08-10 12:10:29,702 * INFO * [125663] atomIncorp_evenness_abund/mean:10,sigma:2/30/20 Finished with 0
2015-08-10 12:10:29,704 * INFO * [126006] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/8
2015-08-10 12:10:31,115 * INFO * [125697] atomIncorp_evenness_abund/mean:10,sigma:2/30/14 Finished with 0
2015-08-10 12:10:31,117 * INFO * [126040] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/3
2015-08-10 12:10:33,720 * INFO * [125752] atomIncorp_evenness_abund/mean:10,sigma:2/30/7 Finished with 0
2015-08-10 12:10:33,721 * INFO * [126092] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/13
2015-08-10 12:10:36,480 * INFO * [125786] atomIncorp_evenness_abund/mean:10,sigma:2/30/19 Finished with 0
2015-08-10 12:10:36,482 * INFO * [126126] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/10
2015-08-10 12:10:37,064 * INFO * [125804] atomIncorp_evenness_abund/mean:10,sigma:2/30/18 Finished with 0
2015-08-10 12:10:37,066 * INFO * [126144] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/2
2015-08-10 12:10:37,479 * INFO * [125824] atomIncorp_evenness_abund/mean:10,sigma:2/30/15 Finished with 0
2015-08-10 12:10:37,481 * INFO * [126172] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/12
2015-08-10 12:10:37,554 * INFO * [125844] atomIncorp_evenness_abund/mean:10,sigma:2/30/11 Finished with 0
2015-08-10 12:10:37,555 * INFO * [126184] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/1
2015-08-10 12:10:38,923 * INFO * [125864] atomIncorp_evenness_abund/mean:10,sigma:2/30/16 Finished with 0
2015-08-10 12:10:38,924 * INFO * [126204] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/4
2015-08-10 12:10:39,344 * INFO * [125876] atomIncorp_evenness_abund/mean:10,sigma:2/30/9 Finished with 0
2015-08-10 12:10:39,346 * INFO * [126216] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/5
2015-08-10 12:10:41,388 * INFO * [125894] atomIncorp_evenness_abund/mean:10,sigma:2/30/17 Finished with 0
2015-08-10 12:10:41,390 * INFO * [126234] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/30/6
2015-08-10 12:10:45,916 * INFO * [126006] atomIncorp_evenness_abund/mean:10,sigma:2/30/8 Finished with 0
2015-08-10 12:10:45,918 * INFO * [126346] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/20
2015-08-10 12:10:47,354 * INFO * [126040] atomIncorp_evenness_abund/mean:10,sigma:2/30/3 Finished with 0
2015-08-10 12:10:47,356 * INFO * [126380] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/14
2015-08-10 12:10:49,945 * INFO * [126092] atomIncorp_evenness_abund/mean:10,sigma:2/30/13 Finished with 0
2015-08-10 12:10:49,947 * INFO * [126432] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/7
2015-08-10 12:10:52,673 * INFO * [126126] atomIncorp_evenness_abund/mean:10,sigma:2/30/10 Finished with 0
2015-08-10 12:10:52,674 * INFO * [126466] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/19
2015-08-10 12:10:53,293 * INFO * [126144] atomIncorp_evenness_abund/mean:10,sigma:2/30/2 Finished with 0
2015-08-10 12:10:53,295 * INFO * [126484] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/18
2015-08-10 12:10:53,690 * INFO * [126172] atomIncorp_evenness_abund/mean:10,sigma:2/30/12 Finished with 0
2015-08-10 12:10:53,692 * INFO * [126506] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/15
2015-08-10 12:10:53,802 * INFO * [126184] atomIncorp_evenness_abund/mean:10,sigma:2/30/1 Finished with 0
2015-08-10 12:10:53,804 * INFO * [126524] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/11
2015-08-10 12:10:55,080 * INFO * [126204] atomIncorp_evenness_abund/mean:10,sigma:2/30/4 Finished with 0
2015-08-10 12:10:55,081 * INFO * [126544] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/16
2015-08-10 12:10:55,446 * INFO * [126216] atomIncorp_evenness_abund/mean:10,sigma:2/30/5 Finished with 0
2015-08-10 12:10:55,447 * INFO * [126556] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/9
2015-08-10 12:10:57,537 * INFO * [126234] atomIncorp_evenness_abund/mean:10,sigma:2/30/6 Finished with 0
2015-08-10 12:10:57,539 * INFO * [126574] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/17
2015-08-10 12:11:02,173 * INFO * [126346] atomIncorp_evenness_abund/mean:10,sigma:2/50/20 Finished with 0
2015-08-10 12:11:02,175 * INFO * [126686] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/8
2015-08-10 12:11:03,547 * INFO * [126380] atomIncorp_evenness_abund/mean:10,sigma:2/50/14 Finished with 0
2015-08-10 12:11:03,549 * INFO * [126720] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/3
2015-08-10 12:11:06,103 * INFO * [126432] atomIncorp_evenness_abund/mean:10,sigma:2/50/7 Finished with 0
2015-08-10 12:11:06,105 * INFO * [126772] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/13
2015-08-10 12:11:08,910 * INFO * [126466] atomIncorp_evenness_abund/mean:10,sigma:2/50/19 Finished with 0
2015-08-10 12:11:08,912 * INFO * [126806] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/10
2015-08-10 12:11:09,599 * INFO * [126484] atomIncorp_evenness_abund/mean:10,sigma:2/50/18 Finished with 0
2015-08-10 12:11:09,601 * INFO * [126832] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/2
2015-08-10 12:11:09,873 * INFO * [126506] atomIncorp_evenness_abund/mean:10,sigma:2/50/15 Finished with 0
2015-08-10 12:11:09,874 * INFO * [126846] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/12
2015-08-10 12:11:09,984 * INFO * [126524] atomIncorp_evenness_abund/mean:10,sigma:2/50/11 Finished with 0
2015-08-10 12:11:09,986 * INFO * [126864] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/1
2015-08-10 12:11:11,231 * INFO * [126544] atomIncorp_evenness_abund/mean:10,sigma:2/50/16 Finished with 0
2015-08-10 12:11:11,232 * INFO * [126878] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/4
2015-08-10 12:11:11,575 * INFO * [126556] atomIncorp_evenness_abund/mean:10,sigma:2/50/9 Finished with 0
2015-08-10 12:11:11,577 * INFO * [126896] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/5
2015-08-10 12:11:13,827 * INFO * [126574] atomIncorp_evenness_abund/mean:10,sigma:2/50/17 Finished with 0
2015-08-10 12:11:13,829 * INFO * [126923] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/50/6
2015-08-10 12:11:18,361 * INFO * [126686] atomIncorp_evenness_abund/mean:10,sigma:2/50/8 Finished with 0
2015-08-10 12:11:18,363 * INFO * [127027] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/20
2015-08-10 12:11:19,739 * INFO * [126720] atomIncorp_evenness_abund/mean:10,sigma:2/50/3 Finished with 0
2015-08-10 12:11:19,741 * INFO * [127061] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/14
2015-08-10 12:11:22,297 * INFO * [126772] atomIncorp_evenness_abund/mean:10,sigma:2/50/13 Finished with 0
2015-08-10 12:11:22,299 * INFO * [127129] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/7
2015-08-10 12:11:25,108 * INFO * [126806] atomIncorp_evenness_abund/mean:10,sigma:2/50/10 Finished with 0
2015-08-10 12:11:25,109 * INFO * [127163] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/19
2015-08-10 12:11:25,730 * INFO * [126832] atomIncorp_evenness_abund/mean:10,sigma:2/50/2 Finished with 0
2015-08-10 12:11:25,732 * INFO * [127181] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/18
2015-08-10 12:11:26,179 * INFO * [126846] atomIncorp_evenness_abund/mean:10,sigma:2/50/12 Finished with 0
2015-08-10 12:11:26,181 * INFO * [127211] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/15
2015-08-10 12:11:26,184 * INFO * [126864] atomIncorp_evenness_abund/mean:10,sigma:2/50/1 Finished with 0
2015-08-10 12:11:26,186 * INFO * [127213] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/11
2015-08-10 12:11:27,416 * INFO * [126878] atomIncorp_evenness_abund/mean:10,sigma:2/50/4 Finished with 0
2015-08-10 12:11:27,417 * INFO * [127233] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/16
2015-08-10 12:11:27,749 * INFO * [126896] atomIncorp_evenness_abund/mean:10,sigma:2/50/5 Finished with 0
2015-08-10 12:11:27,751 * INFO * [127253] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/9
2015-08-10 12:11:30,063 * INFO * [126923] atomIncorp_evenness_abund/mean:10,sigma:2/50/6 Finished with 0
2015-08-10 12:11:30,065 * INFO * [127279] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/17
2015-08-10 12:11:35,189 * INFO * [127027] atomIncorp_evenness_abund/mean:10,sigma:2/75/20 Finished with 0
2015-08-10 12:11:35,191 * INFO * [127411] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/8
2015-08-10 12:11:37,237 * INFO * [127061] atomIncorp_evenness_abund/mean:10,sigma:2/75/14 Finished with 0
2015-08-10 12:11:37,240 * INFO * [127445] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/3
2015-08-10 12:11:41,021 * INFO * [127129] atomIncorp_evenness_abund/mean:10,sigma:2/75/7 Finished with 0
2015-08-10 12:11:41,023 * INFO * [127497] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/13
2015-08-10 12:11:43,691 * INFO * [127211] atomIncorp_evenness_abund/mean:10,sigma:2/75/15 Finished with 0
2015-08-10 12:11:43,693 * INFO * [127539] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/10
2015-08-10 12:11:44,118 * INFO * [127163] atomIncorp_evenness_abund/mean:10,sigma:2/75/19 Finished with 0
2015-08-10 12:11:44,120 * INFO * [127559] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/2
2015-08-10 12:11:44,195 * INFO * [127181] atomIncorp_evenness_abund/mean:10,sigma:2/75/18 Finished with 0
2015-08-10 12:11:44,197 * INFO * [127577] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/12
2015-08-10 12:11:45,118 * INFO * [127213] atomIncorp_evenness_abund/mean:10,sigma:2/75/11 Finished with 0
2015-08-10 12:11:45,119 * INFO * [127589] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/1
2015-08-10 12:11:45,683 * INFO * [127233] atomIncorp_evenness_abund/mean:10,sigma:2/75/16 Finished with 0
2015-08-10 12:11:45,685 * INFO * [127601] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/4
2015-08-10 12:11:45,858 * INFO * [127253] atomIncorp_evenness_abund/mean:10,sigma:2/75/9 Finished with 0
2015-08-10 12:11:45,860 * INFO * [127613] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/5
2015-08-10 12:11:48,176 * INFO * [127279] atomIncorp_evenness_abund/mean:10,sigma:2/75/17 Finished with 0
2015-08-10 12:11:48,178 * INFO * [127647] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/75/6
2015-08-10 12:11:51,475 * INFO * [127411] atomIncorp_evenness_abund/mean:10,sigma:2/75/8 Finished with 0
2015-08-10 12:11:51,477 * INFO * [127754] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/20
2015-08-10 12:11:54,881 * INFO * [127445] atomIncorp_evenness_abund/mean:10,sigma:2/75/3 Finished with 0
2015-08-10 12:11:54,883 * INFO * [127820] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/14
2015-08-10 12:11:56,949 * INFO * [127497] atomIncorp_evenness_abund/mean:10,sigma:2/75/13 Finished with 0
2015-08-10 12:11:56,950 * INFO * [127878] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/7
2015-08-10 12:11:59,345 * INFO * [127539] atomIncorp_evenness_abund/mean:10,sigma:2/75/10 Finished with 0
2015-08-10 12:11:59,347 * INFO * [127914] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/19
2015-08-10 12:11:59,676 * INFO * [127577] atomIncorp_evenness_abund/mean:10,sigma:2/75/12 Finished with 0
2015-08-10 12:11:59,678 * INFO * [127926] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/18
2015-08-10 12:12:00,079 * INFO * [127559] atomIncorp_evenness_abund/mean:10,sigma:2/75/2 Finished with 0
2015-08-10 12:12:00,081 * INFO * [127946] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/15
2015-08-10 12:12:00,821 * INFO * [127589] atomIncorp_evenness_abund/mean:10,sigma:2/75/1 Finished with 0
2015-08-10 12:12:00,823 * INFO * [127964] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/11
2015-08-10 12:12:01,356 * INFO * [127601] atomIncorp_evenness_abund/mean:10,sigma:2/75/4 Finished with 0
2015-08-10 12:12:01,358 * INFO * [127976] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/16
2015-08-10 12:12:02,026 * INFO * [127613] atomIncorp_evenness_abund/mean:10,sigma:2/75/5 Finished with 0
2015-08-10 12:12:02,027 * INFO * [127988] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/9
2015-08-10 12:12:03,706 * INFO * [127647] atomIncorp_evenness_abund/mean:10,sigma:2/75/6 Finished with 0
2015-08-10 12:12:03,708 * INFO * [128022] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/17
2015-08-10 12:12:07,487 * INFO * [127754] atomIncorp_evenness_abund/mean:10,sigma:2/15/20 Finished with 0
2015-08-10 12:12:07,489 * INFO * [128126] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/8
2015-08-10 12:12:13,129 * INFO * [127820] atomIncorp_evenness_abund/mean:10,sigma:2/15/14 Finished with 0
2015-08-10 12:12:13,130 * INFO * [128198] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/3
2015-08-10 12:12:14,294 * INFO * [127878] atomIncorp_evenness_abund/mean:10,sigma:2/15/7 Finished with 0
2015-08-10 12:12:14,297 * INFO * [128249] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/13
2015-08-10 12:12:19,363 * INFO * [127926] atomIncorp_evenness_abund/mean:10,sigma:2/15/18 Finished with 0
2015-08-10 12:12:19,365 * INFO * [128315] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/10
2015-08-10 12:12:19,566 * INFO * [127914] atomIncorp_evenness_abund/mean:10,sigma:2/15/19 Finished with 0
2015-08-10 12:12:19,568 * INFO * [128319] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/2
2015-08-10 12:12:21,165 * INFO * [127946] atomIncorp_evenness_abund/mean:10,sigma:2/15/15 Finished with 0
2015-08-10 12:12:21,167 * INFO * [128345] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/12
2015-08-10 12:12:21,755 * INFO * [127964] atomIncorp_evenness_abund/mean:10,sigma:2/15/11 Finished with 0
2015-08-10 12:12:21,757 * INFO * [128363] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/1
2015-08-10 12:12:22,295 * INFO * [127976] atomIncorp_evenness_abund/mean:10,sigma:2/15/16 Finished with 0
2015-08-10 12:12:22,297 * INFO * [128375] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/4
2015-08-10 12:12:22,672 * INFO * [128022] atomIncorp_evenness_abund/mean:10,sigma:2/15/17 Finished with 0
2015-08-10 12:12:22,674 * INFO * [128387] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/5
2015-08-10 12:12:23,177 * INFO * [127988] atomIncorp_evenness_abund/mean:10,sigma:2/15/9 Finished with 0
2015-08-10 12:12:23,179 * INFO * [128415] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/15/6
2015-08-10 12:12:26,953 * INFO * [128126] atomIncorp_evenness_abund/mean:10,sigma:2/15/8 Finished with 0
2015-08-10 12:12:26,955 * INFO * [128461] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/20
2015-08-10 12:12:30,346 * INFO * [128249] atomIncorp_evenness_abund/mean:10,sigma:2/15/13 Finished with 0
2015-08-10 12:12:30,348 * INFO * [128605] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/14
2015-08-10 12:12:31,930 * INFO * [128198] atomIncorp_evenness_abund/mean:10,sigma:2/15/3 Finished with 0
2015-08-10 12:12:31,932 * INFO * [128641] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/7
2015-08-10 12:12:35,641 * INFO * [128319] atomIncorp_evenness_abund/mean:10,sigma:2/15/2 Finished with 0
2015-08-10 12:12:35,643 * INFO * [128707] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/19
2015-08-10 12:12:36,221 * INFO * [128315] atomIncorp_evenness_abund/mean:10,sigma:2/15/10 Finished with 0
2015-08-10 12:12:36,222 * INFO * [128725] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/18
2015-08-10 12:12:37,351 * INFO * [128345] atomIncorp_evenness_abund/mean:10,sigma:2/15/12 Finished with 0
2015-08-10 12:12:37,353 * INFO * [128738] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/15
2015-08-10 12:12:37,919 * INFO * [128363] atomIncorp_evenness_abund/mean:10,sigma:2/15/1 Finished with 0
2015-08-10 12:12:37,921 * INFO * [128756] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/11
2015-08-10 12:12:38,242 * INFO * [128375] atomIncorp_evenness_abund/mean:10,sigma:2/15/4 Finished with 0
2015-08-10 12:12:38,243 * INFO * [128768] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/16
2015-08-10 12:12:38,944 * INFO * [128387] atomIncorp_evenness_abund/mean:10,sigma:2/15/5 Finished with 0
2015-08-10 12:12:38,946 * INFO * [128796] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/9
2015-08-10 12:12:39,664 * INFO * [128415] atomIncorp_evenness_abund/mean:10,sigma:2/15/6 Finished with 0
2015-08-10 12:12:39,666 * INFO * [128808] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/17
2015-08-10 12:12:43,376 * INFO * [128461] atomIncorp_evenness_abund/mean:10,sigma:2/0/20 Finished with 0
2015-08-10 12:12:43,377 * INFO * [128854] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/8
2015-08-10 12:12:48,795 * INFO * [128605] atomIncorp_evenness_abund/mean:10,sigma:2/0/14 Finished with 0
2015-08-10 12:12:48,796 * INFO * [128946] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/3
2015-08-10 12:12:49,017 * INFO * [128641] atomIncorp_evenness_abund/mean:10,sigma:2/0/7 Finished with 0
2015-08-10 12:12:49,019 * INFO * [128990] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/13
2015-08-10 12:12:53,263 * INFO * [128707] atomIncorp_evenness_abund/mean:10,sigma:2/0/19 Finished with 0
2015-08-10 12:12:53,265 * INFO * [129056] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/10
2015-08-10 12:12:53,289 * INFO * [128725] atomIncorp_evenness_abund/mean:10,sigma:2/0/18 Finished with 0
2015-08-10 12:12:53,291 * INFO * [129068] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/2
2015-08-10 12:12:54,250 * INFO * [128738] atomIncorp_evenness_abund/mean:10,sigma:2/0/15 Finished with 0
2015-08-10 12:12:54,252 * INFO * [129080] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/12
2015-08-10 12:12:54,751 * INFO * [128756] atomIncorp_evenness_abund/mean:10,sigma:2/0/11 Finished with 0
2015-08-10 12:12:54,753 * INFO * [129104] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/1
2015-08-10 12:12:55,068 * INFO * [128768] atomIncorp_evenness_abund/mean:10,sigma:2/0/16 Finished with 0
2015-08-10 12:12:55,069 * INFO * [129116] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/4
2015-08-10 12:12:55,732 * INFO * [128796] atomIncorp_evenness_abund/mean:10,sigma:2/0/9 Finished with 0
2015-08-10 12:12:55,734 * INFO * [129136] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/5
2015-08-10 12:12:57,386 * INFO * [128808] atomIncorp_evenness_abund/mean:10,sigma:2/0/17 Finished with 0
2015-08-10 12:12:57,388 * INFO * [129164] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/0/6
2015-08-10 12:13:00,059 * INFO * [128854] atomIncorp_evenness_abund/mean:10,sigma:2/0/8 Finished with 0
2015-08-10 12:13:00,061 * INFO * [129194] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/20
2015-08-10 12:13:05,280 * INFO * [128946] atomIncorp_evenness_abund/mean:10,sigma:2/0/3 Finished with 0
2015-08-10 12:13:05,282 * INFO * [129294] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/14
2015-08-10 12:13:05,750 * INFO * [128990] atomIncorp_evenness_abund/mean:10,sigma:2/0/13 Finished with 0
2015-08-10 12:13:05,752 * INFO * [129330] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/7
2015-08-10 12:13:09,710 * INFO * [129056] atomIncorp_evenness_abund/mean:10,sigma:2/0/10 Finished with 0
2015-08-10 12:13:09,712 * INFO * [129388] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/19
2015-08-10 12:13:09,854 * INFO * [129068] atomIncorp_evenness_abund/mean:10,sigma:2/0/2 Finished with 0
2015-08-10 12:13:09,856 * INFO * [129400] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/18
2015-08-10 12:13:11,041 * INFO * [129080] atomIncorp_evenness_abund/mean:10,sigma:2/0/12 Finished with 0
2015-08-10 12:13:11,043 * INFO * [129426] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/15
2015-08-10 12:13:11,494 * INFO * [129104] atomIncorp_evenness_abund/mean:10,sigma:2/0/1 Finished with 0
2015-08-10 12:13:11,495 * INFO * [129444] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/11
2015-08-10 12:13:11,982 * INFO * [129116] atomIncorp_evenness_abund/mean:10,sigma:2/0/4 Finished with 0
2015-08-10 12:13:11,984 * INFO * [129456] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/16
2015-08-10 12:13:12,594 * INFO * [129136] atomIncorp_evenness_abund/mean:10,sigma:2/0/5 Finished with 0
2015-08-10 12:13:12,596 * INFO * [129476] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/9
2015-08-10 12:13:14,129 * INFO * [129164] atomIncorp_evenness_abund/mean:10,sigma:2/0/6 Finished with 0
2015-08-10 12:13:14,131 * INFO * [129504] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/17
2015-08-10 12:13:16,669 * INFO * [129194] atomIncorp_evenness_abund/mean:10,sigma:2/100/20 Finished with 0
2015-08-10 12:13:16,671 * INFO * [129540] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/8
2015-08-10 12:13:21,727 * INFO * [129294] atomIncorp_evenness_abund/mean:10,sigma:2/100/14 Finished with 0
2015-08-10 12:13:21,729 * INFO * [129634] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/3
2015-08-10 12:13:22,537 * INFO * [129330] atomIncorp_evenness_abund/mean:10,sigma:2/100/7 Finished with 0
2015-08-10 12:13:22,538 * INFO * [129684] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/13
2015-08-10 12:13:26,102 * INFO * [129388] atomIncorp_evenness_abund/mean:10,sigma:2/100/19 Finished with 0
2015-08-10 12:13:26,104 * INFO * [129728] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/10
2015-08-10 12:13:26,219 * INFO * [129444] atomIncorp_evenness_abund/mean:10,sigma:2/100/11 Finished with 0
2015-08-10 12:13:26,221 * INFO * [129740] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/2
2015-08-10 12:13:26,423 * INFO * [129400] atomIncorp_evenness_abund/mean:10,sigma:2/100/18 Finished with 0
2015-08-10 12:13:26,425 * INFO * [129752] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/12
2015-08-10 12:13:27,777 * INFO * [129426] atomIncorp_evenness_abund/mean:10,sigma:2/100/15 Finished with 0
2015-08-10 12:13:27,779 * INFO * [129778] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/1
2015-08-10 12:13:28,494 * INFO * [129456] atomIncorp_evenness_abund/mean:10,sigma:2/100/16 Finished with 0
2015-08-10 12:13:28,496 * INFO * [129796] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/4
2015-08-10 12:13:29,331 * INFO * [129476] atomIncorp_evenness_abund/mean:10,sigma:2/100/9 Finished with 0
2015-08-10 12:13:29,333 * INFO * [129816] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/5
2015-08-10 12:13:31,008 * INFO * [129504] atomIncorp_evenness_abund/mean:10,sigma:2/100/17 Finished with 0
2015-08-10 12:13:31,009 * INFO * [129844] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/100/6
2015-08-10 12:13:33,245 * INFO * [129540] atomIncorp_evenness_abund/mean:10,sigma:2/100/8 Finished with 0
2015-08-10 12:13:33,246 * INFO * [129874] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/20
2015-08-10 12:13:38,303 * INFO * [129634] atomIncorp_evenness_abund/mean:10,sigma:2/100/3 Finished with 0
2015-08-10 12:13:38,304 * INFO * [129982] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/14
2015-08-10 12:13:39,453 * INFO * [129684] atomIncorp_evenness_abund/mean:10,sigma:2/100/13 Finished with 0
2015-08-10 12:13:39,455 * INFO * [130024] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/7
2015-08-10 12:13:42,445 * INFO * [129728] atomIncorp_evenness_abund/mean:10,sigma:2/100/10 Finished with 0
2015-08-10 12:13:42,447 * INFO * [130069] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/19
2015-08-10 12:13:42,943 * INFO * [129740] atomIncorp_evenness_abund/mean:10,sigma:2/100/2 Finished with 0
2015-08-10 12:13:42,944 * INFO * [130096] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/18
2015-08-10 12:13:43,038 * INFO * [129752] atomIncorp_evenness_abund/mean:10,sigma:2/100/12 Finished with 0
2015-08-10 12:13:43,040 * INFO * [130108] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/15
2015-08-10 12:13:44,422 * INFO * [129816] atomIncorp_evenness_abund/mean:10,sigma:2/100/5 Finished with 0
2015-08-10 12:13:44,424 * INFO * [130134] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/11
2015-08-10 12:13:44,647 * INFO * [129778] atomIncorp_evenness_abund/mean:10,sigma:2/100/1 Finished with 0
2015-08-10 12:13:44,649 * INFO * [130146] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/16
2015-08-10 12:13:45,160 * INFO * [129796] atomIncorp_evenness_abund/mean:10,sigma:2/100/4 Finished with 0
2015-08-10 12:13:45,162 * INFO * [130158] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/9
2015-08-10 12:13:47,909 * INFO * [129844] atomIncorp_evenness_abund/mean:10,sigma:2/100/6 Finished with 0
2015-08-10 12:13:47,910 * INFO * [130200] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/17
2015-08-10 12:13:49,914 * INFO * [129874] atomIncorp_evenness_abund/mean:10,sigma:2/10/20 Finished with 0
2015-08-10 12:13:49,915 * INFO * [130230] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/8
2015-08-10 12:13:54,828 * INFO * [129982] atomIncorp_evenness_abund/mean:10,sigma:2/10/14 Finished with 0
2015-08-10 12:13:54,830 * INFO * [130338] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/3
2015-08-10 12:13:56,326 * INFO * [130024] atomIncorp_evenness_abund/mean:10,sigma:2/10/7 Finished with 0
2015-08-10 12:13:56,328 * INFO * [130380] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/13
2015-08-10 12:13:58,868 * INFO * [130069] atomIncorp_evenness_abund/mean:10,sigma:2/10/19 Finished with 0
2015-08-10 12:13:58,870 * INFO * [130424] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/10
2015-08-10 12:13:59,560 * INFO * [130096] atomIncorp_evenness_abund/mean:10,sigma:2/10/18 Finished with 0
2015-08-10 12:13:59,562 * INFO * [130436] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/2
2015-08-10 12:13:59,697 * INFO * [130108] atomIncorp_evenness_abund/mean:10,sigma:2/10/15 Finished with 0
2015-08-10 12:13:59,698 * INFO * [130448] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/12
2015-08-10 12:14:01,216 * INFO * [130134] atomIncorp_evenness_abund/mean:10,sigma:2/10/11 Finished with 0
2015-08-10 12:14:01,218 * INFO * [130474] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/1
2015-08-10 12:14:01,483 * INFO * [130146] atomIncorp_evenness_abund/mean:10,sigma:2/10/16 Finished with 0
2015-08-10 12:14:01,484 * INFO * [130486] Started ./SIPSimRun.sh in atomIncorp_evenness_abund/mean:10,sigma:2/10/4
2015-08-10 12:14:01,831 * INFO * [130158] atomIncorp_evenness_abund/mean:10,sigma:2/10/9 Finished with 0
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2015-08-10 12:15:13,937 * INFO * [131611] atomIncorp_evenness_abund/mean:10,sigma:2/40/8 Finished with 0
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Adding DESeq results table of 'NA' if file is not present



In [75]:

    
p = os.path.join(workDir, 'atomIncorp_evenness_abund', 'mean*/*/*', 'DESeq2-cMtx_rare_byClass.csv')
rareFiles = glob.glob(p)
p = os.path.join(workDir, 'atomIncorp_evenness_abund', 'mean*/*/*', 'DESeq2-cMtx_dom_byClass.csv')
domFiles = glob.glob(p)

print len(rareFiles)
print len(domFiles)



In [76]:

    
byClass_tmp = [
['Sensitivity','NA','NA',0,0],
['Specificity','NA','NA',0,0],
['Pos Pred Value','NA','NA',0,0],
['Neg Pred Value','NA','NA',0,0],
['Prevalence','NA','NA',0,0],
['Detection Rate','NA','NA',0,0],
['Detection Prevalence','NA','NA',0,0],
['Balanced Accuracy','NA','NA',0,0]
]

byClass_tmp = pd.DataFrame(byClass_tmp, columns=['','byClass','abund_dist_p','percIncorp','rep'])



In [77]:

    
# finding files not present
rareFiles = set([x.rstrip('_rare_byClass.csv') for x in rareFiles])
domFiles = set([x.rstrip('_dom_byClass.csv') for x in domFiles])

# in rare but not in dominant list
missingFiles = list(rareFiles - domFiles)

cols = ['abund_dist_p','percIncorp','rep']

for f in missingFiles:    
    df_tmp = byClass_tmp.copy()
    x = f.split('/')
    df_tmp.loc[:,cols] = x[-4:-1]

    outFile = '_'.join([f, 'dom_byClass.csv'])
    df_tmp.to_csv(outFile)



In [ ]:



In [70]:

aggregating confusion matrix data



In [78]:

    
## byClass
### dominant
!cd $workDir; \
    nestagg delim \
        -d atomIncorp_evenness_abund \
        -k abund_dist_p,percIncorp,rep \
        -o ./atomIncorp_evenness_abund/DESeq2-cMtx_dom_byClass.csv \
        DESeq2-cMtx_dom_byClass.csv

### rare
!cd $workDir; \
    nestagg delim \
        -d atomIncorp_evenness_abund \
        -k abund_dist_p,percIncorp,rep \
        -o ./atomIncorp_evenness_abund/DESeq2-cMtx_rare_byClass.csv \
        DESeq2-cMtx_rare_byClass.csv

Plotting accuracy

Dominant taxa



In [79]:

    
%%R -i workDir
setwd(workDir)

byClass = read.csv('./atomIncorp_evenness_abund/DESeq2-cMtx_dom_byClass.csv')
byClass %>% head









    





               X   byClass    abund_dist_p percIncorp rep
1    Sensitivity 0.0000000 mean:10,sigma:3         20  20
2    Specificity 1.0000000 mean:10,sigma:3         20  20
3 Pos Pred Value        NA mean:10,sigma:3         20  20
4 Neg Pred Value 0.7647059 mean:10,sigma:3         20  20
5     Prevalence 0.2352941 mean:10,sigma:3         20  20
6 Detection Rate 0.0000000 mean:10,sigma:3         20  20



In [81]:

    
%%R -w 700
to.keep = c('Sensitivity', 'Specificity', 'Balanced Accuracy')

byClass.f = byClass %>%
    filter(X %in% to.keep) %>%
    mutate(percIncorp = as.character(percIncorp))

byClass.f$percIncorp = factor(byClass.f$percIncorp, levels=sort(unique(as.numeric(byClass.f$percIncorp))))

ggplot(byClass.f, aes(percIncorp, byClass, fill=abund_dist_p)) +
    geom_boxplot() +
    labs(y='Value', x='Atom percent 13C') +
    facet_grid(X ~ .) +
        theme(
        text = element_text(size=16)
        )

Rare taxa



In [82]:

    
%%R -i workDir
setwd(workDir)

byClass = read.csv('./atomIncorp_evenness_abund/DESeq2-cMtx_rare_byClass.csv')
byClass %>% head









    





               X     byClass    abund_dist_p percIncorp rep
1    Sensitivity 0.052631579 mean:10,sigma:3         20  20
2    Specificity 1.000000000 mean:10,sigma:3         20  20
3 Pos Pred Value 1.000000000 mean:10,sigma:3         20  20
4 Neg Pred Value 0.904255319 mean:10,sigma:3         20  20
5     Prevalence 0.100529101 mean:10,sigma:3         20  20
6 Detection Rate 0.005291005 mean:10,sigma:3         20  20



In [83]:

    
%%R -w 700
to.keep = c('Sensitivity', 'Specificity', 'Balanced Accuracy')

byClass.f = byClass %>%
    filter(X %in% to.keep) %>%
    mutate(percIncorp = as.character(percIncorp))

byClass.f$percIncorp = factor(byClass.f$percIncorp, levels=sort(unique(as.numeric(byClass.f$percIncorp))))

ggplot(byClass.f, aes(percIncorp, byClass, fill=abund_dist_p)) +
    geom_boxplot() +
    labs(y='Value', x='Atom percent 13C') +
    facet_grid(X ~ .) +
        theme(
        text = element_text(size=16)
        )

Sample size of dominants and rares

Method:
- Get number of taxa from dominant/rare-parsed DESeq2 object files



In [84]:

    
%%R -i workDir
setwd(workDir)

dom.files = grep('DESeq2_dom$', list.files('./atomIncorp_evenness_abund/', recursive=TRUE), value=TRUE)
rare.files = grep('DESeq2_rare$', list.files('./atomIncorp_evenness_abund/', recursive=TRUE), value=TRUE)

read_taxa = function(file.name, dir='atomIncorp_evenness_abund'){
    f = paste(c(dir, file.name), collapse='/')
    deseq.res = readRDS(f)
    n.taxa = length(unique(rownames(deseq.res)))
    return(n.taxa)
    }

dom.taxa = list()
for(f in dom.files){
    dom.taxa[[f]] = read_taxa(f)
    }

rare.taxa = list()
for(f in rare.files){
    rare.taxa[[f]] = read_taxa(f)
    }



In [89]:

    
%%R 
tbl.dom = as.data.frame(do.call(rbind, dom.taxa))
tbl.dom$abund = 'Dominant'
tbl.rare = as.data.frame(do.call(rbind, rare.taxa))
tbl.rare$abund = 'Rare'

tbl.dom.rare = rbind(tbl.dom, tbl.rare)
colnames(tbl.dom.rare)[1] = 'N.taxa'
tbl.dom.rare$file = rownames(tbl.dom.rare) 
tbl.dom.rare = tbl.dom.rare %>% 
    separate(file, c('abund_dist_p','percIncorp','rep','file'), sep='/') 
tbl.dom.rare %>% head









    





                                                       N.taxa    abund
mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_dom      1 Dominant
mean:10,sigma:1/0/11/OTU_n2_abs1e9_sub-norm_DESeq2_dom      3 Dominant
mean:10,sigma:1/0/12/OTU_n2_abs1e9_sub-norm_DESeq2_dom      2 Dominant
mean:10,sigma:1/0/13/OTU_n2_abs1e9_sub-norm_DESeq2_dom      2 Dominant
mean:10,sigma:1/0/14/OTU_n2_abs1e9_sub-norm_DESeq2_dom      1 Dominant
mean:10,sigma:1/0/15/OTU_n2_abs1e9_sub-norm_DESeq2_dom      2 Dominant
                                                          abund_dist_p
mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_dom mean:10,sigma:1
mean:10,sigma:1/0/11/OTU_n2_abs1e9_sub-norm_DESeq2_dom mean:10,sigma:1
mean:10,sigma:1/0/12/OTU_n2_abs1e9_sub-norm_DESeq2_dom mean:10,sigma:1
mean:10,sigma:1/0/13/OTU_n2_abs1e9_sub-norm_DESeq2_dom mean:10,sigma:1
mean:10,sigma:1/0/14/OTU_n2_abs1e9_sub-norm_DESeq2_dom mean:10,sigma:1
mean:10,sigma:1/0/15/OTU_n2_abs1e9_sub-norm_DESeq2_dom mean:10,sigma:1
                                                       percIncorp rep
mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_dom          0  10
mean:10,sigma:1/0/11/OTU_n2_abs1e9_sub-norm_DESeq2_dom          0  11
mean:10,sigma:1/0/12/OTU_n2_abs1e9_sub-norm_DESeq2_dom          0  12
mean:10,sigma:1/0/13/OTU_n2_abs1e9_sub-norm_DESeq2_dom          0  13
mean:10,sigma:1/0/14/OTU_n2_abs1e9_sub-norm_DESeq2_dom          0  14
mean:10,sigma:1/0/15/OTU_n2_abs1e9_sub-norm_DESeq2_dom          0  15
                                                                                    file
mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_dom OTU_n2_abs1e9_sub-norm_DESeq2_dom
mean:10,sigma:1/0/11/OTU_n2_abs1e9_sub-norm_DESeq2_dom OTU_n2_abs1e9_sub-norm_DESeq2_dom
mean:10,sigma:1/0/12/OTU_n2_abs1e9_sub-norm_DESeq2_dom OTU_n2_abs1e9_sub-norm_DESeq2_dom
mean:10,sigma:1/0/13/OTU_n2_abs1e9_sub-norm_DESeq2_dom OTU_n2_abs1e9_sub-norm_DESeq2_dom
mean:10,sigma:1/0/14/OTU_n2_abs1e9_sub-norm_DESeq2_dom OTU_n2_abs1e9_sub-norm_DESeq2_dom
mean:10,sigma:1/0/15/OTU_n2_abs1e9_sub-norm_DESeq2_dom OTU_n2_abs1e9_sub-norm_DESeq2_dom



In [90]:

    
%%R -w 700 -h 400

tbl.dom.rare$percIncorp = factor(tbl.dom.rare$percIncorp, levels=sort(unique(as.numeric(tbl.dom.rare$percIncorp))))
#tbl.dom.rare$abund_dist_p = factor(tbl.dom.rare$abund_dist_p, levels=sort(unique(as.numeric(tbl.dom.rare$abund_dist_p))))

ggplot(tbl.dom.rare, aes(percIncorp, N.taxa, fill=abund_dist_p)) +
    geom_boxplot(position='dodge') +
    labs(y='Number of taxa', x='Atom percent 13C') +
    facet_grid(abund ~ ., scales='free_y') +
    theme(
        text = element_text(size=16)
        )

Plotting sensitivity ~ taxon_abundance

Method:
- table join: DESeq res file & BD-shift
  - join on taxon
- use cutoffs to select which taxa 'incorporated'
  - padj < 0.1
- compare DESeq result to true result
  - TP,FP,TN,FN
Figure:
- axes: taxon ~ abundance (pointrange: replicates)
  - ordered by abundance
- color by classification (TP,FP,TN,FN)
- facet: percIncorp ~ percTaxa



In [91]:

    
%%bash -s "$R_dir"

find atomIncorp_evenness_abund/ -name "*DESeq2" | \
    perl -pe 's/(.+\/).+/\1/' | \
    xargs -P 30 -I % bash -c \
    "$1DESeq2_addInfo.r %OTU_n2_abs1e9_sub-norm_DESeq2 %comm.txt %ampFrags_kde_dif_incorp_BD-shift.txt > %OTU_n2_abs1e9_sub-norm_DESeq2_info"



In [92]:

    
%%R -i workDir
setwd(workDir)

deseq.files = grep('_DESeq2_info$', list.files('./atomIncorp_evenness_abund/', recursive=TRUE), value=TRUE)


tbl.l = list()
for(f in deseq.files){
    f = paste(c('./atomIncorp_evenness_abund/', f), collapse='/')
    tbl.l[[f]] = readRDS(f) %>% mutate(file = f)
    }

tbl = do.call(rbind, tbl.l)
rownames(tbl) = seq(1,nrow(tbl))

tbl %>% head









    





     baseMean log2FoldChange      lfcSE stat    pvalue padj         p padj.BH
1  0.02886831    -0.03323528 0.09890078    0 0.9979073    1 0.9979073       1
2  0.00000000             NA         NA   NA        NA   NA        NA      NA
3  0.00000000             NA         NA   NA        NA   NA        NA      NA
4  7.76686371    -0.16698690 0.28409613    0 0.9289162    1 0.9289162       1
5  6.86091841     0.09419660 0.21309675    0 0.7676530    1 0.7676530       1
6 25.89944652     0.10113597 0.28928469    0 0.6965815    1 0.6965815       1
                                 taxon lib1 lib2 BD_shift mean_rel_abund_perc
1       Acetobacterium_woodii_DSM_1030   NA    2        0          0.03895585
2    Acetohalobium_arabaticum_DSM_5501   NA    2        0          0.01644128
3         Acholeplasma_laidlawii_PG-8A   NA    2        0          0.07311240
4        Achromobacter_xylosoxidans_A8   NA    2        0          0.05935671
5 Acidaminococcus_fermentans_DSM_20731   NA    2        0          0.04278370
6            Acidiphilium_cryptum_JF-5   NA    2        0          0.05762962
  rank
1  494
2  164
3  779
4  685
5  539
6  673
                                                                                  file
1 ./atomIncorp_evenness_abund//mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_info
2 ./atomIncorp_evenness_abund//mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_info
3 ./atomIncorp_evenness_abund//mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_info
4 ./atomIncorp_evenness_abund//mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_info
5 ./atomIncorp_evenness_abund//mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_info
6 ./atomIncorp_evenness_abund//mean:10,sigma:1/0/10/OTU_n2_abs1e9_sub-norm_DESeq2_info



In [99]:

    
%%R
tbl.e = tbl %>%
    mutate(file = gsub('.+//','', file)) %>%
    separate(file, c('abund_dist_p','percIncorp','rep','file'), sep='/') #%>%
    #unite(percIncorp_percTaxa, percIncorp, percTaxa, sep='_', remove=FALSE)
tbl.e %>% head









    





     baseMean log2FoldChange      lfcSE stat    pvalue padj         p padj.BH
1  0.02886831    -0.03323528 0.09890078    0 0.9979073    1 0.9979073       1
2  0.00000000             NA         NA   NA        NA   NA        NA      NA
3  0.00000000             NA         NA   NA        NA   NA        NA      NA
4  7.76686371    -0.16698690 0.28409613    0 0.9289162    1 0.9289162       1
5  6.86091841     0.09419660 0.21309675    0 0.7676530    1 0.7676530       1
6 25.89944652     0.10113597 0.28928469    0 0.6965815    1 0.6965815       1
                                 taxon lib1 lib2 BD_shift mean_rel_abund_perc
1       Acetobacterium_woodii_DSM_1030   NA    2        0          0.03895585
2    Acetohalobium_arabaticum_DSM_5501   NA    2        0          0.01644128
3         Acholeplasma_laidlawii_PG-8A   NA    2        0          0.07311240
4        Achromobacter_xylosoxidans_A8   NA    2        0          0.05935671
5 Acidaminococcus_fermentans_DSM_20731   NA    2        0          0.04278370
6            Acidiphilium_cryptum_JF-5   NA    2        0          0.05762962
  rank    abund_dist_p percIncorp rep                               file
1  494 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
2  164 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
3  779 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
4  685 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
5  539 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
6  673 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info



In [100]:

    
%%R
BD.shift.cut = 0.05
padj.cut = 0.1


clsfy = function(guess,known){
    if(is.na(guess) | is.na(known)){
        return(NA)
        }
    if(guess == TRUE){
        if(guess == known){
            return('TP')
            } else {
            return('FP')
            }
        } else
    if(guess == FALSE){
        if(guess == known){
            return('TN')
            } else {
            return('FN')
            }
        } else {
        stop('Error: true or false needed')
        }
    }

tbl.e = tbl.e %>% 
    mutate(true_incorp = BD_shift > BD.shift.cut,
           DESeq_incorp = padj < padj.cut,
           cls = mapply(clsfy, DESeq_incorp, true_incorp)) 
    
tbl.e %>% head









    





     baseMean log2FoldChange      lfcSE stat    pvalue padj         p padj.BH
1  0.02886831    -0.03323528 0.09890078    0 0.9979073    1 0.9979073       1
2  0.00000000             NA         NA   NA        NA   NA        NA      NA
3  0.00000000             NA         NA   NA        NA   NA        NA      NA
4  7.76686371    -0.16698690 0.28409613    0 0.9289162    1 0.9289162       1
5  6.86091841     0.09419660 0.21309675    0 0.7676530    1 0.7676530       1
6 25.89944652     0.10113597 0.28928469    0 0.6965815    1 0.6965815       1
                                 taxon lib1 lib2 BD_shift mean_rel_abund_perc
1       Acetobacterium_woodii_DSM_1030   NA    2        0          0.03895585
2    Acetohalobium_arabaticum_DSM_5501   NA    2        0          0.01644128
3         Acholeplasma_laidlawii_PG-8A   NA    2        0          0.07311240
4        Achromobacter_xylosoxidans_A8   NA    2        0          0.05935671
5 Acidaminococcus_fermentans_DSM_20731   NA    2        0          0.04278370
6            Acidiphilium_cryptum_JF-5   NA    2        0          0.05762962
  rank    abund_dist_p percIncorp rep                               file
1  494 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
2  164 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
3  779 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
4  685 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
5  539 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
6  673 mean:10,sigma:1          0  10 OTU_n2_abs1e9_sub-norm_DESeq2_info
  true_incorp DESeq_incorp  cls
1       FALSE        FALSE   TN
2       FALSE           NA <NA>
3       FALSE           NA <NA>
4       FALSE        FALSE   TN
5       FALSE        FALSE   TN
6       FALSE        FALSE   TN



In [101]:

    
%%R
tbl.e$taxon = reorder(tbl.e$taxon, dense_rank(tbl.e$mean_rel_abund_perc))
tbl.e$percIncorp = factor(tbl.e$percIncorp, levels=sort(unique(as.numeric(tbl.e$percIncorp))))
#tbl.e$percTaxa = factor(tbl.e$percTaxa, levels=sort(unique(as.numeric(tbl.e$percTaxa))))



In [105]:

    
%%R -w 1000

ggplot(tbl.e, aes(taxon, mean_rel_abund_perc, color=cls)) +
    geom_point(alpha=0.5) +
    facet_grid(abund_dist_p ~ percIncorp) +
    theme(
        text = element_text(size=16),
        axis.text.x = element_blank()
        )



In [108]:

    
%%R

clsfy = function(guess,known){
    if(is.na(guess) | is.na(known)){
        return(NA)
        }
    if(guess == TRUE){
        if(guess == known){
            return(1)
            } else {
            return(NA)
            }
        } else
    if(guess == FALSE){
        if(guess == known){
            return(NA)
            } else {
            return(0)
            }
        } else {
        stop('Error: true or false needed')
        }
    }

tbl.s.c = tbl.e %>%
    mutate(TP_FN = mapply(clsfy, DESeq_incorp, true_incorp)) %>%
    filter(! is.na(TP_FN)) %>%
    group_by(percIncorp, abund_dist_p) %>%
    summarize(cor.pearson = cor(mean_rel_abund_perc, TP_FN))

tbl.s.c %>% head









    





Source: local data frame [6 x 3]
Groups: percIncorp

  percIncorp    abund_dist_p cor.pearson
1          5 mean:10,sigma:1          NA
2          5 mean:10,sigma:2          NA
3          5 mean:10,sigma:3          NA
4         10 mean:10,sigma:1          NA
5         10 mean:10,sigma:2          NA
6         10 mean:10,sigma:3          NA



In [110]:

    
%%R -w 700 -h 350
ggplot(tbl.s.c, aes(percIncorp, cor.pearson, fill=abund_dist_p)) +
    geom_bar(stat='identity', position='dodge', width=0.5) +
    labs(x='Atom percent 13C', y='r_pb', title='Point-biserial correlation coefficients') +
    theme(
        text = element_text(size=16)
        )

Notes:

SANDBOX



In [170]:

    
%%R -i workDir
setwd(workDir)

x.deseq = './validation/OTU_n2_abs1e10_sub20000_DESeq2'
deseq.res = readRDS(x.deseq)
deseq.res = as.data.frame(deseq.res)
deseq.res$taxon = rownames(deseq.res)
deseq.res %>% head









    





                                    baseMean log2FoldChange    lfcSE      stat
Acetohalobium_arabaticum_DSM_5501  0.4745836      0.9200834 1.394946 0.4803651
Acidovorax_citrulli_AAC00-1        3.2902741     -4.6553395 1.275818 0.0000000
Acidovorax_ebreus_TPSY             4.8031896     -1.0010777 1.176846 0.0000000
Aeromonas_hydrophila_AL09-71       0.7088409      0.5138864 1.270017 0.2077818
Alkalilimnicola_ehrlichii_MLHE-1  28.0436962     -1.2126332 1.274566 0.0000000
Alkaliphilus_oremlandii_OhILAs    29.5094790      0.5352219 1.697529 0.1680218
                                     pvalue padj         p padj.BH
Acetohalobium_arabaticum_DSM_5501 0.3154839    1 0.3154839       1
Acidovorax_citrulli_AAC00-1       0.9999397    1 0.9999397       1
Acidovorax_ebreus_TPSY            0.8561264    1 0.8561264       1
Aeromonas_hydrophila_AL09-71      0.4176997    1 0.4176997       1
Alkalilimnicola_ehrlichii_MLHE-1  0.8744236    1 0.8744236       1
Alkaliphilus_oremlandii_OhILAs    0.4332831    1 0.4332831       1
                                                              taxon
Acetohalobium_arabaticum_DSM_5501 Acetohalobium_arabaticum_DSM_5501
Acidovorax_citrulli_AAC00-1             Acidovorax_citrulli_AAC00-1
Acidovorax_ebreus_TPSY                       Acidovorax_ebreus_TPSY
Aeromonas_hydrophila_AL09-71           Aeromonas_hydrophila_AL09-71
Alkalilimnicola_ehrlichii_MLHE-1   Alkalilimnicola_ehrlichii_MLHE-1
Alkaliphilus_oremlandii_OhILAs       Alkaliphilus_oremlandii_OhILAs



In [171]:

    
%%R -i workDir
setwd(workDir) 

x.comm = 'validation/comm.txt'
comm = read.delim(x.comm, sep='\t')
comm.s = comm %>%
    group_by(taxon_name) %>%
    summarize(mean_rel_abund_perc = mean(rel_abund_perc)) %>%
    mutate(rank = dense_rank(mean_rel_abund_perc))
comm.s %>% head









    





Source: local data frame [6 x 3]

                            taxon_name mean_rel_abund_perc rank
1       Acaryochloris_marina_MBIC11017         0.089773401 1010
2       Acetobacterium_woodii_DSM_1030         0.013390418  609
3 Acetobacter_pasteurianus_IFO_3283-12         0.003064792  270
4    Acetohalobium_arabaticum_DSM_5501         0.058114601  928
5         Acholeplasma_laidlawii_PG-8A         0.004121299  323
6        Achromobacter_xylosoxidans_A8         0.024560238  752



In [172]:

    
%%R -i workDir
setwd(workDir) 

x.BD = 'validation/ampFrags_kde_dif_incorp_BD-shift.txt'
BD.shift = read.delim(x.BD, sep='\t')
BD.shift = BD.shift %>% 
    filter(lib2 == 2)
BD.shift %>% head









    





  lib1 lib2                              taxon BD_shift
1   NA    2         Vibrio_vulnificus_MO6-24_O        0
2   NA    2        Caldisericum_exile_AZM16c01      NaN
3   NA    2        Spiroplasma_taiwanense_CT-1        0
4   NA    2 Thermoanaerobacter_wiegelii_Rt8_B1        0
5   NA    2       Anabaena_cylindrica_PCC_7122        0
6   NA    2    Haemophilus_parainfluenzae_T3T1        0



In [173]:

    
%%R

tbl.j = inner_join(deseq.res, BD.shift, c('taxon' = 'taxon'))
tbl.j = inner_join(tbl.j, comm.s, c('taxon' = 'taxon_name'))
tbl.j %>% head









    





    baseMean log2FoldChange    lfcSE      stat    pvalue padj         p padj.BH
1  0.4745836      0.9200834 1.394946 0.4803651 0.3154839    1 0.3154839       1
2  3.2902741     -4.6553395 1.275818 0.0000000 0.9999397    1 0.9999397       1
3  4.8031896     -1.0010777 1.176846 0.0000000 0.8561264    1 0.8561264       1
4  0.7088409      0.5138864 1.270017 0.2077818 0.4176997    1 0.4176997       1
5 28.0436962     -1.2126332 1.274566 0.0000000 0.8744236    1 0.8744236       1
6 29.5094790      0.5352219 1.697529 0.1680218 0.4332831    1 0.4332831       1
                              taxon lib1 lib2  BD_shift mean_rel_abund_perc
1 Acetohalobium_arabaticum_DSM_5501   NA    2 0.0000000          0.05811460
2       Acidovorax_citrulli_AAC00-1   NA    2 0.9994683          0.07152763
3            Acidovorax_ebreus_TPSY   NA    2 0.0000000          0.14267760
4      Aeromonas_hydrophila_AL09-71   NA    2 0.9968581          0.02364744
5  Alkalilimnicola_ehrlichii_MLHE-1   NA    2 0.0000000          0.77596664
6    Alkaliphilus_oremlandii_OhILAs   NA    2 0.0000000          1.29218348
  rank
1  928
2  970
3 1068
4  745
5 1187
6 1199



In [174]:

    
%%R
BD.shift.cut = 0.05
padj.cut = 0.1


clsfy = function(guess,known){
    if(guess == TRUE){
        if(guess == known){
            return('TP')
            } else {
            return('FP')
            }
        } else
    if(guess == FALSE){
        if(guess == known){
            return('TN')
            } else {
            return('FN')
            }
        } else {
        stop('Error: true or false needed')
        }
    }

tbl.j = tbl.j %>% 
    mutate(true_incorp = BD_shift > BD.shift.cut,
           DESeq_incorp = padj < padj.cut,
           cls = mapply(clsfy, DESeq_incorp, true_incorp)) 
    
tbl.j %>% head









    





    baseMean log2FoldChange    lfcSE      stat    pvalue padj         p padj.BH
1  0.4745836      0.9200834 1.394946 0.4803651 0.3154839    1 0.3154839       1
2  3.2902741     -4.6553395 1.275818 0.0000000 0.9999397    1 0.9999397       1
3  4.8031896     -1.0010777 1.176846 0.0000000 0.8561264    1 0.8561264       1
4  0.7088409      0.5138864 1.270017 0.2077818 0.4176997    1 0.4176997       1
5 28.0436962     -1.2126332 1.274566 0.0000000 0.8744236    1 0.8744236       1
6 29.5094790      0.5352219 1.697529 0.1680218 0.4332831    1 0.4332831       1
                              taxon lib1 lib2  BD_shift mean_rel_abund_perc
1 Acetohalobium_arabaticum_DSM_5501   NA    2 0.0000000          0.05811460
2       Acidovorax_citrulli_AAC00-1   NA    2 0.9994683          0.07152763
3            Acidovorax_ebreus_TPSY   NA    2 0.0000000          0.14267760
4      Aeromonas_hydrophila_AL09-71   NA    2 0.9968581          0.02364744
5  Alkalilimnicola_ehrlichii_MLHE-1   NA    2 0.0000000          0.77596664
6    Alkaliphilus_oremlandii_OhILAs   NA    2 0.0000000          1.29218348
  rank true_incorp DESeq_incorp cls
1  928       FALSE        FALSE  TN
2  970        TRUE        FALSE  FN
3 1068       FALSE        FALSE  TN
4  745        TRUE        FALSE  FN
5 1187       FALSE        FALSE  TN
6 1199       FALSE        FALSE  TN



In [175]:

    
%%R -w 900

tbl.j$taxon = reorder(tbl.j$taxon, tbl.j$mean_rel_abund_perc)

ggplot(tbl.j, aes(taxon, mean_rel_abund_perc, color=cls)) +
    geom_point()



In [ ]:

    
%%R -i workDir
setwd(workDir)

deseq.res = readRDS('./validation/OTU_n2_abs1e10_sub20000_DESeq2')



In [17]:

    
%%R

comm = read.delim('./validation/comm.txt', sep='\t')
comm.s = comm %>%
    group_by(taxon_name) %>%
    summarize(mean_rel_abund_perc = mean(rel_abund_perc))
comm.s %>% head









    





Source: local data frame [6 x 2]

                            taxon_name mean_rel_abund_perc
1       Acaryochloris_marina_MBIC11017         0.089773401
2       Acetobacterium_woodii_DSM_1030         0.013390418
3 Acetobacter_pasteurianus_IFO_3283-12         0.003064792
4    Acetohalobium_arabaticum_DSM_5501         0.058114601
5         Acholeplasma_laidlawii_PG-8A         0.004121299
6        Achromobacter_xylosoxidans_A8         0.024560238



In [21]:

    
%%R
tmp = deseq.res %>%
    as.data.frame() 
tmp$taxon_name = rownames(tmp)

tmp = inner_join(tmp, comm.s, c('taxon_name' = 'taxon_name'))
tmp = tmp %>%
    mutate(dom_rare = mean_rel_abund_perc > 1)

tmp %>% head









    





    baseMean log2FoldChange    lfcSE      stat    pvalue padj         p padj.BH
1  0.4745836      0.9200834 1.394946 0.4803651 0.3154839    1 0.3154839       1
2  3.2902741     -4.6553395 1.275818 0.0000000 0.9999397    1 0.9999397       1
3  4.8031896     -1.0010777 1.176846 0.0000000 0.8561264    1 0.8561264       1
4  0.7088409      0.5138864 1.270017 0.2077818 0.4176997    1 0.4176997       1
5 28.0436962     -1.2126332 1.274566 0.0000000 0.8744236    1 0.8744236       1
6 29.5094790      0.5352219 1.697529 0.1680218 0.4332831    1 0.4332831       1
                         taxon_name mean_rel_abund_perc dom_rare
1 Acetohalobium_arabaticum_DSM_5501          0.05811460    FALSE
2       Acidovorax_citrulli_AAC00-1          0.07152763    FALSE
3            Acidovorax_ebreus_TPSY          0.14267760    FALSE
4      Aeromonas_hydrophila_AL09-71          0.02364744    FALSE
5  Alkalilimnicola_ehrlichii_MLHE-1          0.77596664    FALSE
6    Alkaliphilus_oremlandii_OhILAs          1.29218348     TRUE



In [22]:

    
%%R
tmp %>% filter(dom_rare == FALSE) %>% nrow %>% print
tmp %>% filter(dom_rare == TRUE) %>% nrow %>% print



In [ ]: