.. Tadbit documentation master file, created by sphinx-quickstart on Tue Jan 15 18:23:49 2013. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive.

TADbit is a computational package that deals with 3C-based data (more specifically Hi-C data) to detect Topologically A ssociating Domain (TAD) borders and to further analyze TADs by: i) the identification of conserved TAD borders and ii) the definition of sets of TADs sharing structural features iii) the three-dimensional modeling of the chromatin. Hi-C experiments generate genomic interaction data that is usually summarized at the chromosome level. TADbit is built around the concept of chromosome, and uses it as a central item to compare different Hi-C experiments. The library has been designed to be used by researchers with minimal level of expertise in computer science; the all-in-one scripts pro vided in TADbit allow to run a full analysis in one single command line, while advanced users may produce their own pro grams using TADbit as a complementary tool.

.. epigraph:: .. toctree:: :maxdepth: 3 install tutorial reference/index biblio