TADbit is a computational package that deals with 3C-based data (more specifically Hi-C data). It handles all the steps from the alignment of paired-end reads to the detection of Topologically Associating Domain (TAD) borders, compartments and three-dimensional modeling of chromatin based on interaction matrices. The different steps:
The library has been designed to be used by researchers with minimal level of expertise in computer science. A set of the all-in-one scripts (called TADbit tools) allow to run a full analysis in one single command line.
On the other hand, advanced users may produce their own scripts using the TADbit API.