In [239]:
# give access to importing dwarfz
import os, sys
dwarfz_package_dir = os.getcwd().split("dwarfz")[0]
if dwarfz_package_dir not in sys.path:
sys.path.insert(0, dwarfz_package_dir)
import dwarfz
# back to regular import statements
%matplotlib inline
from matplotlib import pyplot as plt
import seaborn as sns
sns.set(context="poster", style="ticks", font_scale=1.4)
import numpy as np
import pandas as pd
import glob
import shutil
from scipy.special import expit
import pathlib
import send2trash
In [21]:
COSMOS_filename = pathlib.Path(dwarfz.data_dir_default) / "COSMOS_reference.sqlite"
COSMOS = dwarfz.datasets.COSMOS(COSMOS_filename)
In [22]:
HSC_filename = pathlib.Path(dwarfz.data_dir_default) / "HSC_COSMOS_median_forced.sqlite3"
HSC = dwarfz.datasets.HSC(HSC_filename)
In [23]:
matches_filename = pathlib.Path(dwarfz.data_dir_default) / "matches.sqlite3"
matches_df = dwarfz.matching.Matches.load_from_filename(matches_filename)
In [5]:
combined = matches_df[matches_df.match].copy()
combined["ra"] = COSMOS.df.loc[combined.index].ra
combined["dec"] = COSMOS.df.loc[combined.index].dec
combined["photo_z"] = COSMOS.df.loc[combined.index].photo_z
combined["log_mass"] = COSMOS.df.loc[combined.index].mass_med
photometry_cols = [
"gcmodel_flux","gcmodel_flux_err","gcmodel_flux_flags", "gcmodel_mag",
"rcmodel_flux","rcmodel_flux_err","rcmodel_flux_flags", "rcmodel_mag",
"icmodel_flux","icmodel_flux_err","icmodel_flux_flags", "icmodel_mag",
"zcmodel_flux","zcmodel_flux_err","zcmodel_flux_flags", "zcmodel_mag",
"ycmodel_flux","ycmodel_flux_err","ycmodel_flux_flags", "ycmodel_mag",
]
for col in photometry_cols:
combined[col] = HSC.df.loc[combined.catalog_2_ids][col].values
In [6]:
combined["g_minus_r"] = combined.gcmodel_mag - combined.rcmodel_mag
combined["r_minus_i"] = combined.rcmodel_mag - combined.icmodel_mag
combined["i_minus_z"] = combined.icmodel_mag - combined.zcmodel_mag
combined["z_minus_y"] = combined.zcmodel_mag - combined.ycmodel_mag
In [7]:
mask = np.isfinite(combined["g_minus_r"]) & np.isfinite(combined["r_minus_i"]) \
& np.isfinite(combined["i_minus_z"]) & np.isfinite(combined["z_minus_y"]) \
& np.isfinite(combined["icmodel_mag"]) \
& (~combined.gcmodel_flux_flags) & (~combined.rcmodel_flux_flags) \
& (~combined.icmodel_flux_flags) & (~combined.zcmodel_flux_flags) \
& (~combined.ycmodel_flux_flags)
combined = combined[mask]
In [9]:
low_z = (combined.photo_z < .15)
low_mass = (combined.log_mass > 8) & (combined.log_mass < 9)
In [10]:
combined["low_z_low_mass"] = (low_z & low_mass)
combined.low_z_low_mass.mean()
Out[10]:
0.002185072976027315
In [13]:
target_ids = pd.read_csv("../narrowband_deconfusion/target_galaxies-HSC_ids.csv")
target_ids.head()
Out[13]:
COSMOS_id
HSC_id
0
219965
43158447025312151
1
220286
43158584464277542
2
220319
43158584464268517
3
220421
43158447025292549
4
220691
43158584464268544
In [14]:
contaminant_ids = pd.read_csv("../narrowband_deconfusion/contaminant_galaxies-HSC_ids.csv")
contaminant_ids.head()
Out[14]:
COSMOS_id
HSC_id
0
220029
43158584464246406
1
220142
43158859342153228
2
220169
43158859342173270
3
220274
43158447025298878
4
220476
43158721903220831
In [264]:
targets_path = pathlib.Path.home() / "dwarfz" \
/ "galaxies_narrowband" \
/ "target"
targets_path.mkdir(parents=True, exist_ok=True)
In [277]:
contaminants_path = pathlib.Path.home() / "dwarfz" \
/ "galaxies_narrowband" \
/ "contaminant"
contaminants_path.mkdir(parents=True, exist_ok=True)
In [199]:
google_dir = pathlib.Path.home() / "Google Drive" \
/ "HSC_COSMOS_galaxies" \
/ "galaxies"
predownloaded_ids = {int(image_dir.name)
for image_dir in google_dir.iterdir()
if image_dir.is_dir()}
In [266]:
i = 0
for (_, _, HSC_id) in target_ids.itertuples():
if HSC_id in predownloaded_ids:
image_dir = google_dir / str(HSC_id)
new_dir = targets_path / image_dir.name
if not new_dir.is_dir():
new_dir.symlink_to(image_dir, target_is_directory=True)
i += 1
print("symlinked {} galaxies".format(i))
symlinked 4162 galaxies
In [267]:
j = 0
for (_, _, HSC_id) in contaminant_ids.itertuples():
if HSC_id in predownloaded_ids:
image_dir = google_dir / str(HSC_id)
new_dir = contaminants_path / image_dir.name
if not new_dir.is_dir():
new_dir.symlink_to(image_dir, target_is_directory=True)
j += 1
print("symlinked {} galaxies".format(j))
symlinked 11256 galaxies
In [121]:
# num galaxies remaining to download
target_ids.shape[0] + contaminant_ids.shape[0] - i - j
Out[121]:
11521
In [127]:
target_ids_to_download = set(target_ids.HSC_id) - predownloaded_ids
In [130]:
contaminant_ids_to_download = set(contaminant_ids.HSC_id) - predownloaded_ids
In [137]:
ids_to_download = target_ids_to_download | contaminant_ids_to_download
For technical details, see: https://hsc-release.mtk.nao.ac.jp/das_quarry/manual.html
I'll be downloading these directly into the google drive folder. Then, when everything is complete, I'll just symlink them into the appropriate project folders, split by target and contaminant.
In [141]:
galaxy_coords = combined[["catalog_2_ids", "ra", "dec"]]
galaxy_coords = galaxy_coords.rename(columns={"catalog_2_ids":"HSC_index"})
galaxy_coords = galaxy_coords.set_index("HSC_index")
galaxy_coords = galaxy_coords.loc[ids_to_download]
galaxy_coords.head()
Out[141]:
ra
dec
HSC_index
43158597349179408
150.235849
2.280739
43159013961007125
149.604142
2.505246
43158876522053655
149.782530
2.485514
43158597349179418
150.263496
2.281219
43158872227086362
149.864641
2.318558
In [142]:
width = "20asec"
filters = ["HSC-G", "HSC-R", "HSC-I", "HSC-Z", "HSC-Y"]
rerun = "pdr1_deep"
In [182]:
quarry_input_dir = pathlib.Path("galaxy_images_training") \
/ "quarry_input_files"
quarry_input_dir.mkdir(exist_ok=True)
quarry_name_format = "tmp_quarry_{:>04d}.txt"
batch_i = 0
files_in_batch = 0
max_files_per_batch = 1000
tmp_filename = quarry_input_dir / quarry_name_format.format(batch_i)
f = open(tmp_filename, mode="w")
print("#? ra dec filter sw sh rerun", file=f)
print_formatter = " {galaxy.ra:.6f}deg {galaxy.dec:.6f}deg {filter} {width} {width} {rerun} # {galaxy.Index}"
for galaxy in galaxy_coords.itertuples():
for filter in filters:
print(print_formatter.format(galaxy=galaxy,
width=width,
filter=filter,
rerun=rerun),
file=f)
files_in_batch += 1
if files_in_batch == max_files_per_batch:
f.close()
files_in_batch = 0
batch_i += 1
tmp_filename = quarry_input_dir / quarry_name_format.format(batch_i)
f = open(tmp_filename, mode="w")
print("#? ra dec filter sw sh rerun", file=f)
f.close()
In [157]:
!head -n 10 $tmp_filename
#? ra dec filter sw sh rerun
150.358331deg 2.680556deg HSC-G 20asec 20asec pdr1_deep # 43158468500160068
150.358331deg 2.680556deg HSC-R 20asec 20asec pdr1_deep # 43158468500160068
150.358331deg 2.680556deg HSC-I 20asec 20asec pdr1_deep # 43158468500160068
150.358331deg 2.680556deg HSC-Z 20asec 20asec pdr1_deep # 43158468500160068
150.358331deg 2.680556deg HSC-Y 20asec 20asec pdr1_deep # 43158468500160068
150.144028deg 2.269632deg HSC-G 20asec 20asec pdr1_deep # 43158734788132421
150.144028deg 2.269632deg HSC-R 20asec 20asec pdr1_deep # 43158734788132421
150.144028deg 2.269632deg HSC-I 20asec 20asec pdr1_deep # 43158734788132421
150.144028deg 2.269632deg HSC-Z 20asec 20asec pdr1_deep # 43158734788132421
In [158]:
!wc -l $tmp_filename
716 galaxy_images_training/quarry_input_files/tmp_quarry_0057.txt
In [159]:
!ls galaxy_images_training/quarry_input_files/ | wc -l
58
In [160]:
!ls -lh galaxy_images_training/quarry_input_files/ | head -n 10
total 9696
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0000.txt
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0001.txt
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0002.txt
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0003.txt
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0004.txt
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0005.txt
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0006.txt
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0007.txt
-rw-r--r--@ 1 egentry staff 80K Apr 4 14:05 tmp_quarry_0008.txt
1)
First you need to setup you authentication information. Add it to a file like galaxy_images_training/curl_netrc which should look like:
machine hsc-release.mtk.nao.ac.jp login <your username> password <your password>
This allows you to script the curl calls, without being prompted for your password each time
2a)
The curl call (in (2b)) will spit out files into a somewhat unpredicatably named directory, like arch-170928-231223. You should rename this to match the batch suffix. You really should do this right away, so you don't get confused. In general I add the rename onto the same line as the curl call:
curl ... | tar xvf - && mv arch-* quarry_files_a
This only works if it finds one arch- directory, but you really shouldn't have multiple arch directories at any given time; that's a recipe for getting your galaxies mixed up.
2b)
Here's the actual curl invocation:
curl --netrc-file galaxy_images_training/curl_netrc https://hsc-release.mtk.nao.ac.jp/das_quarry/cgi-bin/quarryImage --form list=@<coord list filename> | tar xvf -
In [196]:
filenames = sorted(quarry_input_dir.iterdir())
min_batch_number_to_pull = 1
max_batch_number_to_pull = 100
new_data_dir = targets_path.parent / "staging"
new_data_dir.mkdir(exist_ok=True)
for i, filename in enumerate(filenames):
if i < min_batch_number_to_pull:
continue
if i >= max_batch_number_to_pull:
break
print("Currently processing file: {}".format(os.path.basename(filename)), end="\r", flush=True)
os.system(("curl -k --netrc-file galaxy_images_training/curl_netrc "
"https://hsc-release.mtk.nao.ac.jp/das_quarry/cgi-bin/quarryImage "
"--form list=@{filename} "
"| tar -xvf -").format(filename=filename))
arch_dirs = list(pathlib.Path.cwd().glob("arch-*"))
assert(len(arch_dirs)==1)
arch_dir = arch_dirs[0]
with open(filename, "r") as f:
_ = f.readline() # skip header
line_number = 1 # 1 indexed, and then also with header
for line in f:
line_number += 1
HSC_id = int(line.split("#")[-1].strip())
HSC_dir = new_data_dir / str(HSC_id)
HSC_dir.mkdir(exist_ok=True)
image_filenames = list(arch_dir.glob(
str(line_number) + "-cutout-HSC-?-????-pdr1_deep.fits"
))
if len(image_filenames) == 0:
continue
elif len(image_filenames) >1:
raise RuntimeError("Too many files for line {} id {}".format(
line_number, HSC_id,
))
image_filename = image_filenames[0]
# rename with HSC id and move to within `new_data_dir`
image_filename.rename(
HSC_dir / image_filename.name.replace(
"{}-cutout".format(line_number),
"{}-cutout".format(HSC_id),
)
)
arch_dir.rmdir()
Currently processing file: tmp_quarry_0057.txt
In [240]:
staging_dir = google_dir.parent / "staging"
In [244]:
num_removed = 0
for staged_dir in staging_dir.iterdir():
if not staged_dir.is_dir(): continue
num_images = len({*staged_dir.glob("*.fits")})
if num_images>5:
raise ValueError("{} has {} fits files".format(staged_dir, num_images))
elif num_images < 5:
print("too few images in {} (n={}); removing".format(
staged_dir,
num_images,
))
num_removed += 1
send2trash.send2trash(str(staged_dir))
else:
staged_dir.rename(staged_dir.parent.parent / "galaxies" / staged_dir.name)
num_removed
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788101886 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788108305 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788132862 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349177253 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788102056 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349172177 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349179933 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349148648 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349177095 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788136297 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788109486 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349170872 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349157806 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158743378057333 (n=0); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349152583 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788110938 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788134365 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349155560 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349176386 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788104194 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158996781127857 (n=0); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788135078 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349171708 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349175952 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349171398 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349155790 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349181179 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788106057 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349151102 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349148813 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349174413 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788103387 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349155936 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349181989 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788108101 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349181141 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788109671 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788131289 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349178649 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788124764 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349181942 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349150245 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788107310 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349170642 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349172327 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788110195 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349150413 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349181788 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349148418 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349147662 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349181916 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349174216 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349177800 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788125629 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349170817 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349172318 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158730493165993 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349173468 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158867932108953 (n=0); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158610234071156 (n=0); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788125281 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788130105 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788129028 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349153265 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349175561 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349153291 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788127522 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349170477 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788125275 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349154843 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349175798 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349178087 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349181112 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349175308 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158597349182551 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788130133 (n=3); removing
too few images in /Users/egentry/Google Drive/HSC_COSMOS_galaxies/staging/43158734788111082 (n=3); removing
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Out[244]:
1655
In [293]:
pre_linked_ids = {int(path.name) for path in contaminants_path.iterdir() if path.is_dir()}
pre_linked_ids |= {int(path.name) for path in targets_path.iterdir() if path.is_dir()}
len(pre_linked_ids)
Out[293]:
15413
In [304]:
narrowband_ids = set(target_ids.HSC_id) | set(contaminant_ids.HSC_id)
len(narrowband_ids)
Out[304]:
26934
In [299]:
all_downloaded_ids = {int(path.name) for path in google_dir.iterdir()
if path.is_dir()}
len(all_downloaded_ids)
Out[299]:
183278
In [324]:
num_to_link = 0
already_linked = 0
missing = 0
for HSC_id in narrowband_ids:
if HSC_id in pre_linked_ids:
already_linked += 1
if HSC_id not in all_downloaded_ids:
missing += 1
if HSC_id in target_ids.HSC_id.values:
class_path = targets_path
elif HSC_id in contaminant_ids.HSC_id.values:
class_path = contaminants_path
else:
raise ValueError("HSC id {} in neither targets nor contaminants".format(HSC_id))
image_dir = google_dir / str(HSC_id)
new_dir = class_path / image_dir.name
if not new_dir.is_dir():
# new_dir.symlink_to(image_dir, target_is_directory=True)
pass
num_to_link += 1
print("just linked: ", num_to_link)
print("previously linked: ", already_linked)
print("missing: ", missing)
just linked: 26934
previously linked: 15413
missing: 1655
In [326]:
for path in targets_path.iterdir():
if not path.is_dir():
continue
HSC_id = int(path.name)
if HSC_id not in target_ids.HSC_id.values:
raise ValueError("HSC id {} should not be in target path".format(HSC_id))
In [327]:
for path in contaminants_path.iterdir():
if not path.is_dir():
continue
HSC_id = int(path.name)
if HSC_id not in contaminant_ids.HSC_id.values:
raise ValueError("HSC id {} should not be in contaminant path".format(HSC_id))
In [ ]:
Content source: egentry/dwarf_photo-z
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