In [9]:
import xarray as xr
import numpy as np
import pandas as pd
%matplotlib inline
from matplotlib import pyplot as plt
from dask.diagnostics import ProgressBar
import seaborn as sns
from matplotlib.colors import LogNorm
We already downloaded a subsetted MODIS-Aqua chlorophyll-a dataset for the Arabian Sea.
We can read all the netcdf files into one xarray Dataset using the open_mfsdataset
function. Note that this does not load the data into memory yet. That only happens when we try to access the values.
In [10]:
ds_8day = xr.open_mfdataset('./data_collector_modisa_chla9km/ModisA_Arabian_Sea_chlor_a_9km_*_8D.nc')
ds_daily = xr.open_mfdataset('./data_collector_modisa_chla9km/ModisA_Arabian_Sea_chlor_a_9km_*_D.nc')
both_datasets = [ds_8day, ds_daily]
How much data is contained here? Let's get the answer in MB.
In [11]:
print([(ds.nbytes / 1e6) for ds in both_datasets])
[534.295504, 4241.4716]
The 8-day dataset is ~534 MB while the daily dataset is 4.2 GB. These both easily fit in RAM. So let's load them all into memory
In [12]:
[ds.load() for ds in both_datasets]
Out[12]:
[<xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3, time: 667)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
* time (time) datetime64[ns] 2002-07-04 2002-07-12 2002-07-20 ...
Data variables:
chlor_a (time, lat, lon) float64 nan nan nan nan nan nan nan nan ...
palette (time, rgb, eightbitcolor) float64 -109.0 0.0 108.0 ...,
<xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3, time: 5295)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
* time (time) datetime64[ns] 2002-07-04 2002-07-05 2002-07-06 ...
Data variables:
chlor_a (time, lat, lon) float64 nan nan nan nan nan nan nan nan ...
palette (time, rgb, eightbitcolor) float64 -109.0 0.0 108.0 ...]
In [13]:
def fix_bad_data(ds):
# for some reason, the cloud / land mask is backwards on some data
# this is obvious because there are chlorophyl values less than zero
bad_data = ds.chlor_a.groupby('time').min() < 0
# loop through and fix
for n in np.nonzero(bad_data.values)[0]:
data = ds.chlor_a[n].values
ds.chlor_a.values[n] = np.ma.masked_less(data, 0).filled(np.nan)
In [14]:
[fix_bad_data(ds) for ds in both_datasets]
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/xarray/core/variable.py:1046: RuntimeWarning: invalid value encountered in less
if not reflexive
Out[14]:
[None, None]
In [15]:
ds_8day.chlor_a>0
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/xarray/core/variable.py:1046: RuntimeWarning: invalid value encountered in greater
if not reflexive
Out[15]:
<xarray.DataArray 'chlor_a' (time: 667, lat: 276, lon: 360)>
array([[[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
...,
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False]],
[[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
...,
[False, False, False, ..., False, False, False],
[False, False, False, ..., True, False, False],
[False, False, False, ..., False, False, False]],
[[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
...,
[False, False, False, ..., False, False, True],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, True, True]],
...,
[[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
...,
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False]],
[[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
...,
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False]],
[[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
...,
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False],
[False, False, False, ..., False, False, False]]], dtype=bool)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 27.37 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 45.63 ...
* time (time) datetime64[ns] 2002-07-04 2002-07-12 2002-07-20 ...
In [16]:
(ds_8day.chlor_a>0).sum(dim='time').plot()
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/xarray/core/variable.py:1046: RuntimeWarning: invalid value encountered in greater
if not reflexive
Out[16]:
<matplotlib.collections.QuadMesh at 0x11979efd0>
In [17]:
# find a mask for the land
ocean_mask = (ds_8day.chlor_a>0).sum(dim='time')>0
#ocean_mask = (ds_daily.chlor_a>0).sum(dim='time')>0
num_ocean_points = ocean_mask.sum().values # compute the total nonzeros regions(data point)
ocean_mask.plot()
plt.title('%g total ocean points' % num_ocean_points)
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/xarray/core/variable.py:1046: RuntimeWarning: invalid value encountered in greater
if not reflexive
Out[17]:
<matplotlib.text.Text at 0x13d3f6b70>
In [18]:
ds_8day
Out[18]:
<xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3, time: 667)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
* time (time) datetime64[ns] 2002-07-04 2002-07-12 2002-07-20 ...
Data variables:
chlor_a (time, lat, lon) float64 nan nan nan nan nan nan nan nan ...
palette (time, rgb, eightbitcolor) float64 -109.0 0.0 108.0 ...
In [19]:
ds_daily
Out[19]:
<xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3, time: 5295)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
* time (time) datetime64[ns] 2002-07-04 2002-07-05 2002-07-06 ...
Data variables:
chlor_a (time, lat, lon) float64 nan nan nan nan nan nan nan nan ...
palette (time, rgb, eightbitcolor) float64 -109.0 0.0 108.0 ...
In [20]:
plt.figure(figsize=(8,6))
ds_daily.chlor_a.sel(time='2002-11-18',method='nearest').plot(norm=LogNorm())
#ds_daily.chlor_a.sel(time=target_date, method='nearest').plot(norm=LogNorm())
Out[20]:
<matplotlib.collections.QuadMesh at 0x11c3897f0>
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/matplotlib/colors.py:1022: RuntimeWarning: invalid value encountered in less_equal
mask |= resdat <= 0
In [21]:
list(ds_daily.groupby('time')) # take a look at what's inside
Out[21]:
[(numpy.datetime64('2002-07-04T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-04
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-05T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-05
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-06T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-06
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-07T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-07
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-08T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-08
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-09T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-09
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-10T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-10
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-11T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-11
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-12T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-12
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-13T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-13
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-14T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-14
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-15T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-15
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-16T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-16
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-17T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-17
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-18T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-18
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-19T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-19
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-20T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-20
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-21T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-21
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-22T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-22
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-23T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-23
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-24T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-24
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-25T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-25
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2002-07-26T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2002-07-26
Data variables:
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palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2002-07-27
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2002-07-28
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2002-07-29
Data variables:
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time datetime64[ns] 2002-07-30
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 nan nan nan nan nan nan nan ...),
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time datetime64[ns] 2002-07-31
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 nan nan nan nan nan nan nan ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2002-08-01
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 nan nan nan nan nan nan nan ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2002-08-02
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 nan nan nan nan nan nan nan ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2002-08-03
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 nan nan nan nan nan nan nan ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2002-08-04
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 nan nan nan nan nan nan nan ...),
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time datetime64[ns] 2002-08-05
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 nan nan nan nan nan nan nan ...),
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time datetime64[ns] 2002-08-06
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2002-08-07
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2002-08-08
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2002-08-09
Data variables:
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time datetime64[ns] 2002-08-10
Data variables:
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time datetime64[ns] 2002-08-11
Data variables:
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time datetime64[ns] 2002-08-12
Data variables:
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time datetime64[ns] 2002-08-13
Data variables:
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time datetime64[ns] 2002-08-14
Data variables:
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time datetime64[ns] 2002-08-15
Data variables:
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time datetime64[ns] 2002-08-16
Data variables:
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time datetime64[ns] 2002-08-17
Data variables:
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time datetime64[ns] 2002-08-18
Data variables:
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time datetime64[ns] 2002-08-19
Data variables:
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time datetime64[ns] 2002-08-20
Data variables:
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time datetime64[ns] 2002-08-21
Data variables:
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time datetime64[ns] 2002-08-22
Data variables:
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time datetime64[ns] 2002-08-23
Data variables:
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time datetime64[ns] 2002-08-24
Data variables:
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time datetime64[ns] 2002-08-25
Data variables:
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time datetime64[ns] 2002-08-26
Data variables:
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time datetime64[ns] 2002-08-27
Data variables:
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time datetime64[ns] 2002-08-28
Data variables:
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time datetime64[ns] 2002-08-29
Data variables:
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time datetime64[ns] 2002-08-30
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time datetime64[ns] 2002-08-31
Data variables:
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time datetime64[ns] 2002-09-01
Data variables:
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time datetime64[ns] 2002-09-02
Data variables:
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time datetime64[ns] 2002-09-03
Data variables:
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time datetime64[ns] 2002-09-04
Data variables:
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time datetime64[ns] 2002-09-05
Data variables:
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time datetime64[ns] 2002-09-06
Data variables:
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time datetime64[ns] 2002-09-07
Data variables:
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time datetime64[ns] 2002-09-08
Data variables:
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time datetime64[ns] 2002-09-09
Data variables:
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time datetime64[ns] 2002-09-10
Data variables:
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time datetime64[ns] 2002-09-11
Data variables:
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time datetime64[ns] 2002-09-12
Data variables:
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time datetime64[ns] 2002-09-13
Data variables:
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time datetime64[ns] 2002-09-14
Data variables:
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time datetime64[ns] 2002-09-15
Data variables:
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time datetime64[ns] 2002-09-16
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time datetime64[ns] 2002-09-17
Data variables:
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time datetime64[ns] 2002-09-18
Data variables:
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time datetime64[ns] 2002-09-19
Data variables:
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time datetime64[ns] 2002-09-20
Data variables:
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time datetime64[ns] 2002-09-21
Data variables:
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time datetime64[ns] 2002-09-22
Data variables:
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time datetime64[ns] 2002-09-23
Data variables:
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time datetime64[ns] 2002-09-24
Data variables:
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time datetime64[ns] 2002-09-25
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time datetime64[ns] 2002-09-26
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time datetime64[ns] 2002-09-27
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time datetime64[ns] 2002-09-28
Data variables:
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time datetime64[ns] 2002-09-29
Data variables:
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time datetime64[ns] 2002-09-30
Data variables:
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time datetime64[ns] 2002-10-01
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time datetime64[ns] 2002-10-02
Data variables:
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time datetime64[ns] 2002-10-03
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time datetime64[ns] 2002-10-04
Data variables:
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time datetime64[ns] 2002-10-05
Data variables:
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time datetime64[ns] 2002-10-06
Data variables:
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time datetime64[ns] 2002-10-07
Data variables:
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time datetime64[ns] 2002-10-08
Data variables:
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time datetime64[ns] 2002-10-09
Data variables:
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time datetime64[ns] 2002-10-10
Data variables:
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time datetime64[ns] 2002-10-11
Data variables:
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time datetime64[ns] 2002-10-12
Data variables:
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time datetime64[ns] 2002-10-13
Data variables:
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time datetime64[ns] 2002-10-14
Data variables:
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time datetime64[ns] 2002-10-15
Data variables:
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time datetime64[ns] 2002-10-16
Data variables:
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time datetime64[ns] 2002-10-17
Data variables:
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time datetime64[ns] 2002-10-18
Data variables:
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time datetime64[ns] 2002-10-19
Data variables:
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time datetime64[ns] 2002-10-20
Data variables:
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time datetime64[ns] 2002-10-21
Data variables:
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time datetime64[ns] 2002-10-22
Data variables:
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time datetime64[ns] 2002-10-23
Data variables:
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time datetime64[ns] 2002-10-24
Data variables:
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time datetime64[ns] 2002-10-25
Data variables:
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time datetime64[ns] 2002-10-26
Data variables:
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time datetime64[ns] 2002-10-27
Data variables:
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time datetime64[ns] 2002-10-28
Data variables:
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time datetime64[ns] 2002-10-29
Data variables:
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time datetime64[ns] 2002-10-30
Data variables:
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time datetime64[ns] 2002-10-31
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time datetime64[ns] 2002-11-01
Data variables:
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time datetime64[ns] 2002-11-02
Data variables:
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time datetime64[ns] 2002-11-03
Data variables:
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time datetime64[ns] 2002-11-04
Data variables:
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time datetime64[ns] 2002-11-05
Data variables:
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time datetime64[ns] 2002-11-06
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time datetime64[ns] 2002-11-07
Data variables:
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time datetime64[ns] 2002-11-08
Data variables:
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time datetime64[ns] 2002-11-09
Data variables:
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time datetime64[ns] 2002-11-10
Data variables:
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time datetime64[ns] 2002-11-11
Data variables:
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time datetime64[ns] 2002-11-12
Data variables:
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time datetime64[ns] 2002-11-13
Data variables:
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time datetime64[ns] 2002-11-14
Data variables:
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time datetime64[ns] 2002-11-15
Data variables:
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time datetime64[ns] 2002-11-16
Data variables:
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time datetime64[ns] 2002-11-17
Data variables:
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time datetime64[ns] 2002-11-18
Data variables:
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time datetime64[ns] 2002-11-19
Data variables:
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time datetime64[ns] 2002-11-20
Data variables:
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time datetime64[ns] 2002-11-21
Data variables:
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time datetime64[ns] 2002-11-22
Data variables:
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time datetime64[ns] 2002-11-23
Data variables:
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time datetime64[ns] 2002-11-24
Data variables:
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time datetime64[ns] 2002-11-25
Data variables:
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time datetime64[ns] 2002-11-26
Data variables:
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time datetime64[ns] 2002-11-27
Data variables:
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time datetime64[ns] 2002-11-28
Data variables:
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time datetime64[ns] 2002-11-29
Data variables:
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time datetime64[ns] 2002-11-30
Data variables:
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time datetime64[ns] 2002-12-01
Data variables:
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time datetime64[ns] 2002-12-02
Data variables:
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time datetime64[ns] 2002-12-03
Data variables:
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time datetime64[ns] 2002-12-04
Data variables:
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time datetime64[ns] 2002-12-05
Data variables:
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time datetime64[ns] 2002-12-06
Data variables:
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time datetime64[ns] 2002-12-07
Data variables:
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time datetime64[ns] 2002-12-08
Data variables:
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time datetime64[ns] 2002-12-09
Data variables:
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time datetime64[ns] 2002-12-10
Data variables:
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time datetime64[ns] 2002-12-11
Data variables:
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time datetime64[ns] 2002-12-12
Data variables:
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time datetime64[ns] 2002-12-13
Data variables:
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time datetime64[ns] 2002-12-14
Data variables:
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time datetime64[ns] 2002-12-15
Data variables:
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time datetime64[ns] 2002-12-16
Data variables:
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time datetime64[ns] 2002-12-17
Data variables:
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time datetime64[ns] 2002-12-18
Data variables:
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time datetime64[ns] 2002-12-19
Data variables:
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time datetime64[ns] 2002-12-20
Data variables:
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time datetime64[ns] 2002-12-21
Data variables:
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time datetime64[ns] 2002-12-22
Data variables:
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time datetime64[ns] 2002-12-23
Data variables:
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time datetime64[ns] 2002-12-24
Data variables:
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time datetime64[ns] 2002-12-25
Data variables:
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time datetime64[ns] 2002-12-26
Data variables:
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time datetime64[ns] 2002-12-27
Data variables:
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time datetime64[ns] 2002-12-28
Data variables:
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time datetime64[ns] 2002-12-29
Data variables:
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time datetime64[ns] 2002-12-30
Data variables:
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time datetime64[ns] 2002-12-31
Data variables:
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time datetime64[ns] 2003-01-01
Data variables:
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time datetime64[ns] 2003-01-02
Data variables:
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time datetime64[ns] 2003-01-03
Data variables:
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time datetime64[ns] 2003-01-04
Data variables:
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time datetime64[ns] 2003-01-05
Data variables:
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time datetime64[ns] 2003-01-06
Data variables:
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time datetime64[ns] 2003-01-07
Data variables:
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time datetime64[ns] 2003-01-08
Data variables:
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time datetime64[ns] 2003-01-09
Data variables:
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time datetime64[ns] 2003-01-10
Data variables:
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time datetime64[ns] 2003-01-11
Data variables:
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time datetime64[ns] 2003-01-12
Data variables:
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time datetime64[ns] 2003-01-13
Data variables:
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time datetime64[ns] 2003-01-14
Data variables:
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time datetime64[ns] 2003-01-15
Data variables:
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time datetime64[ns] 2003-01-16
Data variables:
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time datetime64[ns] 2003-01-17
Data variables:
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time datetime64[ns] 2003-01-18
Data variables:
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time datetime64[ns] 2003-01-19
Data variables:
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time datetime64[ns] 2003-01-20
Data variables:
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time datetime64[ns] 2003-01-21
Data variables:
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time datetime64[ns] 2003-01-22
Data variables:
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time datetime64[ns] 2003-01-23
Data variables:
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time datetime64[ns] 2003-01-24
Data variables:
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time datetime64[ns] 2003-01-25
Data variables:
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time datetime64[ns] 2003-01-26
Data variables:
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time datetime64[ns] 2003-01-27
Data variables:
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time datetime64[ns] 2003-01-28
Data variables:
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time datetime64[ns] 2003-01-29
Data variables:
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time datetime64[ns] 2003-01-30
Data variables:
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time datetime64[ns] 2003-01-31
Data variables:
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time datetime64[ns] 2003-02-01
Data variables:
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time datetime64[ns] 2003-02-02
Data variables:
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time datetime64[ns] 2003-02-03
Data variables:
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time datetime64[ns] 2003-02-04
Data variables:
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time datetime64[ns] 2003-02-05
Data variables:
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time datetime64[ns] 2003-02-06
Data variables:
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time datetime64[ns] 2003-02-07
Data variables:
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time datetime64[ns] 2003-02-08
Data variables:
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time datetime64[ns] 2003-02-09
Data variables:
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time datetime64[ns] 2003-02-10
Data variables:
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time datetime64[ns] 2003-02-11
Data variables:
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time datetime64[ns] 2003-02-12
Data variables:
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time datetime64[ns] 2003-02-13
Data variables:
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time datetime64[ns] 2003-02-14
Data variables:
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time datetime64[ns] 2003-02-15
Data variables:
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time datetime64[ns] 2003-02-16
Data variables:
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time datetime64[ns] 2003-02-17
Data variables:
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time datetime64[ns] 2003-02-18
Data variables:
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time datetime64[ns] 2003-02-19
Data variables:
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time datetime64[ns] 2003-02-20
Data variables:
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time datetime64[ns] 2003-02-21
Data variables:
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time datetime64[ns] 2003-02-22
Data variables:
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time datetime64[ns] 2003-02-23
Data variables:
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time datetime64[ns] 2003-02-24
Data variables:
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time datetime64[ns] 2003-02-25
Data variables:
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time datetime64[ns] 2003-02-26
Data variables:
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time datetime64[ns] 2003-02-27
Data variables:
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time datetime64[ns] 2003-02-28
Data variables:
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time datetime64[ns] 2003-03-01
Data variables:
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time datetime64[ns] 2003-03-02
Data variables:
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time datetime64[ns] 2003-03-03
Data variables:
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time datetime64[ns] 2003-03-04
Data variables:
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time datetime64[ns] 2003-03-05
Data variables:
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time datetime64[ns] 2003-03-06
Data variables:
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time datetime64[ns] 2003-03-07
Data variables:
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time datetime64[ns] 2003-03-08
Data variables:
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time datetime64[ns] 2003-03-09
Data variables:
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time datetime64[ns] 2003-03-10
Data variables:
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time datetime64[ns] 2003-03-11
Data variables:
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time datetime64[ns] 2003-03-12
Data variables:
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time datetime64[ns] 2003-03-13
Data variables:
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time datetime64[ns] 2003-03-14
Data variables:
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time datetime64[ns] 2003-03-15
Data variables:
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time datetime64[ns] 2003-03-16
Data variables:
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time datetime64[ns] 2003-03-17
Data variables:
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time datetime64[ns] 2003-03-18
Data variables:
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time datetime64[ns] 2003-03-19
Data variables:
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time datetime64[ns] 2003-03-20
Data variables:
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time datetime64[ns] 2003-03-21
Data variables:
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time datetime64[ns] 2003-03-22
Data variables:
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time datetime64[ns] 2003-03-23
Data variables:
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time datetime64[ns] 2003-03-24
Data variables:
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time datetime64[ns] 2003-03-25
Data variables:
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time datetime64[ns] 2003-03-26
Data variables:
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-03-27
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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time datetime64[ns] 2003-03-28
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-03-29
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-03-30
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-03-31
Data variables:
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time datetime64[ns] 2003-04-01
Data variables:
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time datetime64[ns] 2003-04-02
Data variables:
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time datetime64[ns] 2003-04-03
Data variables:
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time datetime64[ns] 2003-04-04
Data variables:
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time datetime64[ns] 2003-04-05
Data variables:
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time datetime64[ns] 2003-04-06
Data variables:
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time datetime64[ns] 2003-04-07
Data variables:
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time datetime64[ns] 2003-04-08
Data variables:
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time datetime64[ns] 2003-04-09
Data variables:
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time datetime64[ns] 2003-04-10
Data variables:
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time datetime64[ns] 2003-04-11
Data variables:
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time datetime64[ns] 2003-04-12
Data variables:
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time datetime64[ns] 2003-04-13
Data variables:
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time datetime64[ns] 2003-04-14
Data variables:
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time datetime64[ns] 2003-04-15
Data variables:
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time datetime64[ns] 2003-04-16
Data variables:
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time datetime64[ns] 2003-04-17
Data variables:
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time datetime64[ns] 2003-04-18
Data variables:
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time datetime64[ns] 2003-04-19
Data variables:
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time datetime64[ns] 2003-04-20
Data variables:
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time datetime64[ns] 2003-04-21
Data variables:
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time datetime64[ns] 2003-04-22
Data variables:
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time datetime64[ns] 2003-04-23
Data variables:
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time datetime64[ns] 2003-04-24
Data variables:
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time datetime64[ns] 2003-04-25
Data variables:
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time datetime64[ns] 2003-04-26
Data variables:
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time datetime64[ns] 2003-04-27
Data variables:
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time datetime64[ns] 2003-04-28
Data variables:
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time datetime64[ns] 2003-04-29
Data variables:
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time datetime64[ns] 2003-04-30
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-05-01
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-05-02
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-05-03
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-05-04
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-05-05
Data variables:
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time datetime64[ns] 2003-05-06
Data variables:
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time datetime64[ns] 2003-05-07
Data variables:
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time datetime64[ns] 2003-05-08
Data variables:
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time datetime64[ns] 2003-05-09
Data variables:
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time datetime64[ns] 2003-05-10
Data variables:
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time datetime64[ns] 2003-05-11
Data variables:
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time datetime64[ns] 2003-05-12
Data variables:
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time datetime64[ns] 2003-05-13
Data variables:
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time datetime64[ns] 2003-05-14
Data variables:
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time datetime64[ns] 2003-05-15
Data variables:
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time datetime64[ns] 2003-05-16
Data variables:
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time datetime64[ns] 2003-05-17
Data variables:
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time datetime64[ns] 2003-05-18
Data variables:
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time datetime64[ns] 2003-05-19
Data variables:
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time datetime64[ns] 2003-05-20
Data variables:
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time datetime64[ns] 2003-05-21
Data variables:
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time datetime64[ns] 2003-05-22
Data variables:
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time datetime64[ns] 2003-05-23
Data variables:
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time datetime64[ns] 2003-05-24
Data variables:
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time datetime64[ns] 2003-05-25
Data variables:
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time datetime64[ns] 2003-05-26
Data variables:
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time datetime64[ns] 2003-05-27
Data variables:
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time datetime64[ns] 2003-05-28
Data variables:
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time datetime64[ns] 2003-05-29
Data variables:
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time datetime64[ns] 2003-05-30
Data variables:
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time datetime64[ns] 2003-05-31
Data variables:
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time datetime64[ns] 2003-06-01
Data variables:
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time datetime64[ns] 2003-06-02
Data variables:
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time datetime64[ns] 2003-06-03
Data variables:
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time datetime64[ns] 2003-06-04
Data variables:
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time datetime64[ns] 2003-06-05
Data variables:
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time datetime64[ns] 2003-06-06
Data variables:
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time datetime64[ns] 2003-06-07
Data variables:
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time datetime64[ns] 2003-06-08
Data variables:
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time datetime64[ns] 2003-06-09
Data variables:
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time datetime64[ns] 2003-06-10
Data variables:
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time datetime64[ns] 2003-06-11
Data variables:
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time datetime64[ns] 2003-06-12
Data variables:
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time datetime64[ns] 2003-06-13
Data variables:
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time datetime64[ns] 2003-06-14
Data variables:
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time datetime64[ns] 2003-06-15
Data variables:
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time datetime64[ns] 2003-06-16
Data variables:
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time datetime64[ns] 2003-06-17
Data variables:
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time datetime64[ns] 2003-06-18
Data variables:
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time datetime64[ns] 2003-06-19
Data variables:
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time datetime64[ns] 2003-06-20
Data variables:
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time datetime64[ns] 2003-06-21
Data variables:
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time datetime64[ns] 2003-06-22
Data variables:
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time datetime64[ns] 2003-06-23
Data variables:
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time datetime64[ns] 2003-06-24
Data variables:
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time datetime64[ns] 2003-06-25
Data variables:
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time datetime64[ns] 2003-06-26
Data variables:
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time datetime64[ns] 2003-06-27
Data variables:
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time datetime64[ns] 2003-06-28
Data variables:
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time datetime64[ns] 2003-06-29
Data variables:
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time datetime64[ns] 2003-06-30
Data variables:
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time datetime64[ns] 2003-07-01
Data variables:
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time datetime64[ns] 2003-07-02
Data variables:
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time datetime64[ns] 2003-07-03
Data variables:
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time datetime64[ns] 2003-07-04
Data variables:
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time datetime64[ns] 2003-07-05
Data variables:
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time datetime64[ns] 2003-07-06
Data variables:
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time datetime64[ns] 2003-07-07
Data variables:
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time datetime64[ns] 2003-07-08
Data variables:
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time datetime64[ns] 2003-07-09
Data variables:
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time datetime64[ns] 2003-07-10
Data variables:
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time datetime64[ns] 2003-07-11
Data variables:
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time datetime64[ns] 2003-07-12
Data variables:
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time datetime64[ns] 2003-07-13
Data variables:
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time datetime64[ns] 2003-07-14
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time datetime64[ns] 2003-07-15
Data variables:
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time datetime64[ns] 2003-07-16
Data variables:
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time datetime64[ns] 2003-07-17
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time datetime64[ns] 2003-07-18
Data variables:
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time datetime64[ns] 2003-07-19
Data variables:
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time datetime64[ns] 2003-07-20
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time datetime64[ns] 2003-07-21
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time datetime64[ns] 2003-07-22
Data variables:
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time datetime64[ns] 2003-07-23
Data variables:
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time datetime64[ns] 2003-07-24
Data variables:
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time datetime64[ns] 2003-07-25
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time datetime64[ns] 2003-07-26
Data variables:
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time datetime64[ns] 2003-07-27
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time datetime64[ns] 2003-07-28
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time datetime64[ns] 2003-07-29
Data variables:
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time datetime64[ns] 2003-07-30
Data variables:
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time datetime64[ns] 2003-07-31
Data variables:
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time datetime64[ns] 2003-08-01
Data variables:
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time datetime64[ns] 2003-08-02
Data variables:
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time datetime64[ns] 2003-08-03
Data variables:
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time datetime64[ns] 2003-08-04
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time datetime64[ns] 2003-08-05
Data variables:
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time datetime64[ns] 2003-08-06
Data variables:
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time datetime64[ns] 2003-08-07
Data variables:
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time datetime64[ns] 2003-08-08
Data variables:
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time datetime64[ns] 2003-08-09
Data variables:
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time datetime64[ns] 2003-08-10
Data variables:
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time datetime64[ns] 2003-08-11
Data variables:
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time datetime64[ns] 2003-08-12
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-08-13
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-08-14
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-08-15
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-08-16
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-08-17
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-08-18
Data variables:
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time datetime64[ns] 2003-08-19
Data variables:
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time datetime64[ns] 2003-08-20
Data variables:
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time datetime64[ns] 2003-08-21
Data variables:
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time datetime64[ns] 2003-08-22
Data variables:
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time datetime64[ns] 2003-08-23
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-08-24
Data variables:
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time datetime64[ns] 2003-08-25
Data variables:
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time datetime64[ns] 2003-08-26
Data variables:
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time datetime64[ns] 2003-08-27
Data variables:
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time datetime64[ns] 2003-08-28
Data variables:
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time datetime64[ns] 2003-08-29
Data variables:
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time datetime64[ns] 2003-08-30
Data variables:
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time datetime64[ns] 2003-08-31
Data variables:
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time datetime64[ns] 2003-09-01
Data variables:
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time datetime64[ns] 2003-09-02
Data variables:
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time datetime64[ns] 2003-09-03
Data variables:
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time datetime64[ns] 2003-09-04
Data variables:
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time datetime64[ns] 2003-09-05
Data variables:
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time datetime64[ns] 2003-09-06
Data variables:
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time datetime64[ns] 2003-09-07
Data variables:
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time datetime64[ns] 2003-09-08
Data variables:
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time datetime64[ns] 2003-09-09
Data variables:
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time datetime64[ns] 2003-09-10
Data variables:
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time datetime64[ns] 2003-09-11
Data variables:
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time datetime64[ns] 2003-09-12
Data variables:
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time datetime64[ns] 2003-09-13
Data variables:
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time datetime64[ns] 2003-09-14
Data variables:
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time datetime64[ns] 2003-09-15
Data variables:
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-09-16
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-09-17
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-09-18
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-09-19
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-09-20
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-09-21
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-09-22
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-09-23
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-09-24
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-09-25
Data variables:
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time datetime64[ns] 2003-09-26
Data variables:
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time datetime64[ns] 2003-09-27
Data variables:
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time datetime64[ns] 2003-09-28
Data variables:
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time datetime64[ns] 2003-09-29
Data variables:
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time datetime64[ns] 2003-09-30
Data variables:
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time datetime64[ns] 2003-10-01
Data variables:
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time datetime64[ns] 2003-10-02
Data variables:
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time datetime64[ns] 2003-10-03
Data variables:
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time datetime64[ns] 2003-10-04
Data variables:
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time datetime64[ns] 2003-10-05
Data variables:
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time datetime64[ns] 2003-10-06
Data variables:
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time datetime64[ns] 2003-10-07
Data variables:
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time datetime64[ns] 2003-10-08
Data variables:
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time datetime64[ns] 2003-10-09
Data variables:
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time datetime64[ns] 2003-10-10
Data variables:
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time datetime64[ns] 2003-10-11
Data variables:
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time datetime64[ns] 2003-10-12
Data variables:
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time datetime64[ns] 2003-10-13
Data variables:
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time datetime64[ns] 2003-10-14
Data variables:
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time datetime64[ns] 2003-10-15
Data variables:
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time datetime64[ns] 2003-10-16
Data variables:
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time datetime64[ns] 2003-10-17
Data variables:
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time datetime64[ns] 2003-10-18
Data variables:
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time datetime64[ns] 2003-10-19
Data variables:
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-20
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-21
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-22
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-23
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-24
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-25
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-26
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-27
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-28
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-29
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-30
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-10-31
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-11-01
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-11-02
Data variables:
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time datetime64[ns] 2003-11-03
Data variables:
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time datetime64[ns] 2003-11-04
Data variables:
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time datetime64[ns] 2003-11-05
Data variables:
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time datetime64[ns] 2003-11-06
Data variables:
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time datetime64[ns] 2003-11-07
Data variables:
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time datetime64[ns] 2003-11-08
Data variables:
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time datetime64[ns] 2003-11-09
Data variables:
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time datetime64[ns] 2003-11-10
Data variables:
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time datetime64[ns] 2003-11-11
Data variables:
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time datetime64[ns] 2003-11-12
Data variables:
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time datetime64[ns] 2003-11-13
Data variables:
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time datetime64[ns] 2003-11-14
Data variables:
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time datetime64[ns] 2003-11-15
Data variables:
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time datetime64[ns] 2003-11-16
Data variables:
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time datetime64[ns] 2003-11-17
Data variables:
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time datetime64[ns] 2003-11-18
Data variables:
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time datetime64[ns] 2003-11-19
Data variables:
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time datetime64[ns] 2003-11-20
Data variables:
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time datetime64[ns] 2003-11-21
Data variables:
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time datetime64[ns] 2003-11-22
Data variables:
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time datetime64[ns] 2003-11-23
Data variables:
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2003-11-24
Data variables:
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time datetime64[ns] 2003-11-25
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-11-26
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-11-27
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2003-11-28
Data variables:
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time datetime64[ns] 2003-11-29
Data variables:
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time datetime64[ns] 2003-11-30
Data variables:
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time datetime64[ns] 2003-12-01
Data variables:
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time datetime64[ns] 2003-12-02
Data variables:
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time datetime64[ns] 2003-12-03
Data variables:
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time datetime64[ns] 2003-12-04
Data variables:
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time datetime64[ns] 2003-12-05
Data variables:
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time datetime64[ns] 2003-12-06
Data variables:
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time datetime64[ns] 2003-12-07
Data variables:
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time datetime64[ns] 2003-12-08
Data variables:
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time datetime64[ns] 2003-12-09
Data variables:
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time datetime64[ns] 2003-12-10
Data variables:
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time datetime64[ns] 2003-12-11
Data variables:
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time datetime64[ns] 2003-12-12
Data variables:
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time datetime64[ns] 2003-12-13
Data variables:
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time datetime64[ns] 2003-12-14
Data variables:
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time datetime64[ns] 2003-12-15
Data variables:
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time datetime64[ns] 2003-12-16
Data variables:
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time datetime64[ns] 2003-12-17
Data variables:
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time datetime64[ns] 2003-12-18
Data variables:
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time datetime64[ns] 2003-12-19
Data variables:
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time datetime64[ns] 2003-12-20
Data variables:
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time datetime64[ns] 2003-12-21
Data variables:
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time datetime64[ns] 2003-12-22
Data variables:
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time datetime64[ns] 2003-12-23
Data variables:
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time datetime64[ns] 2003-12-24
Data variables:
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time datetime64[ns] 2003-12-25
Data variables:
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time datetime64[ns] 2003-12-26
Data variables:
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time datetime64[ns] 2003-12-27
Data variables:
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time datetime64[ns] 2003-12-28
Data variables:
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time datetime64[ns] 2003-12-29
Data variables:
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time datetime64[ns] 2003-12-30
Data variables:
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time datetime64[ns] 2003-12-31
Data variables:
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time datetime64[ns] 2004-01-01
Data variables:
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time datetime64[ns] 2004-01-02
Data variables:
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time datetime64[ns] 2004-01-03
Data variables:
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time datetime64[ns] 2004-01-04
Data variables:
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time datetime64[ns] 2004-01-05
Data variables:
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time datetime64[ns] 2004-01-06
Data variables:
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time datetime64[ns] 2004-01-07
Data variables:
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time datetime64[ns] 2004-01-08
Data variables:
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time datetime64[ns] 2004-01-09
Data variables:
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time datetime64[ns] 2004-01-10
Data variables:
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time datetime64[ns] 2004-01-11
Data variables:
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time datetime64[ns] 2004-01-12
Data variables:
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time datetime64[ns] 2004-01-13
Data variables:
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time datetime64[ns] 2004-01-14
Data variables:
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time datetime64[ns] 2004-01-15
Data variables:
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time datetime64[ns] 2004-01-16
Data variables:
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time datetime64[ns] 2004-01-17
Data variables:
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time datetime64[ns] 2004-01-18
Data variables:
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time datetime64[ns] 2004-01-19
Data variables:
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time datetime64[ns] 2004-01-20
Data variables:
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time datetime64[ns] 2004-01-21
Data variables:
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time datetime64[ns] 2004-01-22
Data variables:
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time datetime64[ns] 2004-01-23
Data variables:
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time datetime64[ns] 2004-01-24
Data variables:
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time datetime64[ns] 2004-01-25
Data variables:
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time datetime64[ns] 2004-01-26
Data variables:
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time datetime64[ns] 2004-01-27
Data variables:
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time datetime64[ns] 2004-01-28
Data variables:
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time datetime64[ns] 2004-01-29
Data variables:
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time datetime64[ns] 2004-01-30
Data variables:
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time datetime64[ns] 2004-01-31
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time datetime64[ns] 2004-02-01
Data variables:
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time datetime64[ns] 2004-02-02
Data variables:
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time datetime64[ns] 2004-02-03
Data variables:
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time datetime64[ns] 2004-02-04
Data variables:
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time datetime64[ns] 2004-02-05
Data variables:
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time datetime64[ns] 2004-02-06
Data variables:
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time datetime64[ns] 2004-02-07
Data variables:
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time datetime64[ns] 2004-02-08
Data variables:
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time datetime64[ns] 2004-02-09
Data variables:
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time datetime64[ns] 2004-02-10
Data variables:
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time datetime64[ns] 2004-02-11
Data variables:
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time datetime64[ns] 2004-02-12
Data variables:
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time datetime64[ns] 2004-02-13
Data variables:
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time datetime64[ns] 2004-02-14
Data variables:
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time datetime64[ns] 2004-02-15
Data variables:
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time datetime64[ns] 2004-02-16
Data variables:
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time datetime64[ns] 2004-02-17
Data variables:
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time datetime64[ns] 2004-02-18
Data variables:
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time datetime64[ns] 2004-02-19
Data variables:
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time datetime64[ns] 2004-02-20
Data variables:
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time datetime64[ns] 2004-02-21
Data variables:
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time datetime64[ns] 2004-02-22
Data variables:
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time datetime64[ns] 2004-02-23
Data variables:
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time datetime64[ns] 2004-02-24
Data variables:
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time datetime64[ns] 2004-02-25
Data variables:
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time datetime64[ns] 2004-02-26
Data variables:
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time datetime64[ns] 2004-02-27
Data variables:
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time datetime64[ns] 2004-02-28
Data variables:
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time datetime64[ns] 2004-02-29
Data variables:
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time datetime64[ns] 2004-03-01
Data variables:
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time datetime64[ns] 2004-03-02
Data variables:
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time datetime64[ns] 2004-03-03
Data variables:
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time datetime64[ns] 2004-03-04
Data variables:
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time datetime64[ns] 2004-03-05
Data variables:
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time datetime64[ns] 2004-03-06
Data variables:
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time datetime64[ns] 2004-03-07
Data variables:
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time datetime64[ns] 2004-03-08
Data variables:
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time datetime64[ns] 2004-03-09
Data variables:
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time datetime64[ns] 2004-03-10
Data variables:
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time datetime64[ns] 2004-03-11
Data variables:
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time datetime64[ns] 2004-03-12
Data variables:
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time datetime64[ns] 2004-03-13
Data variables:
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time datetime64[ns] 2004-03-14
Data variables:
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time datetime64[ns] 2004-03-15
Data variables:
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time datetime64[ns] 2004-03-16
Data variables:
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time datetime64[ns] 2004-03-17
Data variables:
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time datetime64[ns] 2004-03-18
Data variables:
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time datetime64[ns] 2004-03-19
Data variables:
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time datetime64[ns] 2004-03-20
Data variables:
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time datetime64[ns] 2004-03-21
Data variables:
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time datetime64[ns] 2004-03-22
Data variables:
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time datetime64[ns] 2004-03-23
Data variables:
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time datetime64[ns] 2004-03-24
Data variables:
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time datetime64[ns] 2004-03-25
Data variables:
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time datetime64[ns] 2004-03-26
Data variables:
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time datetime64[ns] 2004-03-27
Data variables:
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time datetime64[ns] 2004-03-28
Data variables:
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time datetime64[ns] 2004-03-29
Data variables:
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time datetime64[ns] 2004-03-30
Data variables:
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time datetime64[ns] 2004-03-31
Data variables:
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time datetime64[ns] 2004-04-01
Data variables:
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time datetime64[ns] 2004-04-02
Data variables:
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time datetime64[ns] 2004-04-03
Data variables:
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time datetime64[ns] 2004-04-04
Data variables:
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time datetime64[ns] 2004-04-05
Data variables:
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time datetime64[ns] 2004-04-06
Data variables:
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time datetime64[ns] 2004-04-07
Data variables:
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time datetime64[ns] 2004-04-08
Data variables:
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time datetime64[ns] 2004-04-09
Data variables:
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time datetime64[ns] 2004-04-10
Data variables:
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time datetime64[ns] 2004-04-11
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2004-04-12
Data variables:
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time datetime64[ns] 2004-04-13
Data variables:
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time datetime64[ns] 2004-04-14
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2004-04-15
Data variables:
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time datetime64[ns] 2004-04-16
Data variables:
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time datetime64[ns] 2004-04-17
Data variables:
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time datetime64[ns] 2004-04-18
Data variables:
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time datetime64[ns] 2004-04-19
Data variables:
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time datetime64[ns] 2004-04-20
Data variables:
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time datetime64[ns] 2004-04-21
Data variables:
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time datetime64[ns] 2004-04-22
Data variables:
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time datetime64[ns] 2004-04-23
Data variables:
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time datetime64[ns] 2004-04-24
Data variables:
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time datetime64[ns] 2004-04-25
Data variables:
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time datetime64[ns] 2004-04-26
Data variables:
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time datetime64[ns] 2004-04-27
Data variables:
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time datetime64[ns] 2004-04-28
Data variables:
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time datetime64[ns] 2004-04-29
Data variables:
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time datetime64[ns] 2004-04-30
Data variables:
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time datetime64[ns] 2004-05-01
Data variables:
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time datetime64[ns] 2004-05-02
Data variables:
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time datetime64[ns] 2004-05-03
Data variables:
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time datetime64[ns] 2004-05-04
Data variables:
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time datetime64[ns] 2004-05-05
Data variables:
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time datetime64[ns] 2004-05-06
Data variables:
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time datetime64[ns] 2004-05-07
Data variables:
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time datetime64[ns] 2004-05-08
Data variables:
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time datetime64[ns] 2004-05-09
Data variables:
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time datetime64[ns] 2004-05-10
Data variables:
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time datetime64[ns] 2004-05-11
Data variables:
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time datetime64[ns] 2004-05-12
Data variables:
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time datetime64[ns] 2004-05-13
Data variables:
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time datetime64[ns] 2004-05-14
Data variables:
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time datetime64[ns] 2004-05-15
Data variables:
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time datetime64[ns] 2004-05-16
Data variables:
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time datetime64[ns] 2004-05-17
Data variables:
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time datetime64[ns] 2004-05-18
Data variables:
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time datetime64[ns] 2004-05-19
Data variables:
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time datetime64[ns] 2004-05-20
Data variables:
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time datetime64[ns] 2004-05-21
Data variables:
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time datetime64[ns] 2004-05-22
Data variables:
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time datetime64[ns] 2004-05-23
Data variables:
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time datetime64[ns] 2004-05-24
Data variables:
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time datetime64[ns] 2004-05-25
Data variables:
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time datetime64[ns] 2004-05-26
Data variables:
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time datetime64[ns] 2004-05-27
Data variables:
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time datetime64[ns] 2004-05-28
Data variables:
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time datetime64[ns] 2004-05-29
Data variables:
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time datetime64[ns] 2004-05-30
Data variables:
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time datetime64[ns] 2004-05-31
Data variables:
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time datetime64[ns] 2004-06-01
Data variables:
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time datetime64[ns] 2004-06-02
Data variables:
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time datetime64[ns] 2004-06-03
Data variables:
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time datetime64[ns] 2004-06-04
Data variables:
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time datetime64[ns] 2004-06-05
Data variables:
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time datetime64[ns] 2004-06-06
Data variables:
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time datetime64[ns] 2004-06-07
Data variables:
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time datetime64[ns] 2004-06-08
Data variables:
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time datetime64[ns] 2004-06-09
Data variables:
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time datetime64[ns] 2004-06-10
Data variables:
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time datetime64[ns] 2004-06-11
Data variables:
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time datetime64[ns] 2004-06-12
Data variables:
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time datetime64[ns] 2004-06-13
Data variables:
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time datetime64[ns] 2004-06-14
Data variables:
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time datetime64[ns] 2004-06-15
Data variables:
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time datetime64[ns] 2004-06-16
Data variables:
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time datetime64[ns] 2004-06-17
Data variables:
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time datetime64[ns] 2004-06-18
Data variables:
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time datetime64[ns] 2004-06-19
Data variables:
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time datetime64[ns] 2004-06-20
Data variables:
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time datetime64[ns] 2004-06-21
Data variables:
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time datetime64[ns] 2004-06-22
Data variables:
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time datetime64[ns] 2004-06-23
Data variables:
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time datetime64[ns] 2004-06-24
Data variables:
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time datetime64[ns] 2004-06-25
Data variables:
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time datetime64[ns] 2004-06-26
Data variables:
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time datetime64[ns] 2004-06-27
Data variables:
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time datetime64[ns] 2004-06-28
Data variables:
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time datetime64[ns] 2004-06-29
Data variables:
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time datetime64[ns] 2004-06-30
Data variables:
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time datetime64[ns] 2004-07-01
Data variables:
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time datetime64[ns] 2004-07-02
Data variables:
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time datetime64[ns] 2004-07-03
Data variables:
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time datetime64[ns] 2004-07-04
Data variables:
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time datetime64[ns] 2004-07-05
Data variables:
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time datetime64[ns] 2004-07-06
Data variables:
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time datetime64[ns] 2004-07-07
Data variables:
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time datetime64[ns] 2004-07-08
Data variables:
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time datetime64[ns] 2004-07-09
Data variables:
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time datetime64[ns] 2004-07-10
Data variables:
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time datetime64[ns] 2004-07-11
Data variables:
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time datetime64[ns] 2004-07-12
Data variables:
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time datetime64[ns] 2004-07-13
Data variables:
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time datetime64[ns] 2004-07-14
Data variables:
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time datetime64[ns] 2004-07-15
Data variables:
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time datetime64[ns] 2004-07-16
Data variables:
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time datetime64[ns] 2004-07-17
Data variables:
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time datetime64[ns] 2004-07-18
Data variables:
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time datetime64[ns] 2004-07-19
Data variables:
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time datetime64[ns] 2004-07-20
Data variables:
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time datetime64[ns] 2004-07-21
Data variables:
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time datetime64[ns] 2004-07-22
Data variables:
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time datetime64[ns] 2004-07-23
Data variables:
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time datetime64[ns] 2004-07-24
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2004-07-25
Data variables:
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time datetime64[ns] 2004-07-26
Data variables:
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time datetime64[ns] 2004-07-27
Data variables:
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time datetime64[ns] 2004-07-28
Data variables:
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time datetime64[ns] 2004-07-29
Data variables:
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time datetime64[ns] 2004-07-30
Data variables:
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time datetime64[ns] 2004-07-31
Data variables:
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time datetime64[ns] 2004-08-01
Data variables:
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time datetime64[ns] 2004-08-02
Data variables:
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time datetime64[ns] 2004-08-03
Data variables:
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time datetime64[ns] 2004-08-04
Data variables:
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time datetime64[ns] 2004-08-05
Data variables:
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time datetime64[ns] 2004-08-06
Data variables:
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time datetime64[ns] 2004-08-07
Data variables:
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time datetime64[ns] 2004-08-08
Data variables:
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time datetime64[ns] 2004-08-09
Data variables:
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time datetime64[ns] 2004-08-10
Data variables:
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time datetime64[ns] 2004-08-11
Data variables:
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time datetime64[ns] 2004-08-12
Data variables:
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time datetime64[ns] 2004-08-13
Data variables:
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time datetime64[ns] 2004-08-14
Data variables:
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time datetime64[ns] 2004-08-15
Data variables:
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time datetime64[ns] 2004-08-16
Data variables:
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time datetime64[ns] 2004-08-17
Data variables:
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time datetime64[ns] 2004-08-18
Data variables:
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time datetime64[ns] 2004-08-19
Data variables:
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time datetime64[ns] 2004-08-20
Data variables:
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time datetime64[ns] 2004-08-21
Data variables:
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time datetime64[ns] 2004-08-22
Data variables:
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time datetime64[ns] 2004-08-23
Data variables:
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time datetime64[ns] 2004-08-24
Data variables:
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time datetime64[ns] 2004-08-25
Data variables:
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time datetime64[ns] 2004-08-26
Data variables:
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time datetime64[ns] 2004-08-27
Data variables:
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time datetime64[ns] 2004-08-28
Data variables:
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time datetime64[ns] 2004-08-29
Data variables:
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time datetime64[ns] 2004-08-30
Data variables:
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time datetime64[ns] 2004-08-31
Data variables:
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time datetime64[ns] 2004-09-01
Data variables:
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time datetime64[ns] 2004-09-02
Data variables:
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time datetime64[ns] 2004-09-03
Data variables:
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time datetime64[ns] 2004-09-04
Data variables:
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time datetime64[ns] 2004-09-05
Data variables:
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time datetime64[ns] 2004-09-06
Data variables:
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time datetime64[ns] 2004-09-07
Data variables:
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time datetime64[ns] 2004-09-08
Data variables:
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time datetime64[ns] 2004-09-09
Data variables:
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time datetime64[ns] 2004-09-10
Data variables:
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time datetime64[ns] 2004-09-11
Data variables:
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time datetime64[ns] 2004-09-12
Data variables:
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time datetime64[ns] 2004-09-13
Data variables:
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time datetime64[ns] 2004-09-14
Data variables:
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time datetime64[ns] 2004-09-15
Data variables:
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time datetime64[ns] 2004-09-16
Data variables:
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time datetime64[ns] 2004-09-17
Data variables:
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time datetime64[ns] 2004-09-18
Data variables:
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time datetime64[ns] 2004-09-19
Data variables:
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time datetime64[ns] 2004-09-20
Data variables:
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time datetime64[ns] 2004-09-21
Data variables:
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time datetime64[ns] 2004-09-22
Data variables:
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time datetime64[ns] 2004-09-23
Data variables:
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time datetime64[ns] 2004-09-24
Data variables:
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time datetime64[ns] 2004-09-25
Data variables:
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time datetime64[ns] 2004-09-26
Data variables:
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time datetime64[ns] 2004-09-27
Data variables:
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time datetime64[ns] 2004-09-28
Data variables:
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time datetime64[ns] 2004-09-29
Data variables:
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time datetime64[ns] 2004-09-30
Data variables:
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2004-10-01
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2004-10-02
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2004-10-03
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2004-10-04
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2004-10-05
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2004-10-06
Data variables:
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time datetime64[ns] 2004-10-07
Data variables:
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time datetime64[ns] 2004-10-08
Data variables:
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time datetime64[ns] 2004-10-09
Data variables:
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time datetime64[ns] 2004-10-10
Data variables:
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time datetime64[ns] 2004-10-11
Data variables:
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time datetime64[ns] 2004-10-12
Data variables:
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time datetime64[ns] 2004-10-13
Data variables:
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time datetime64[ns] 2004-10-14
Data variables:
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time datetime64[ns] 2004-10-15
Data variables:
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time datetime64[ns] 2004-10-16
Data variables:
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time datetime64[ns] 2004-10-17
Data variables:
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time datetime64[ns] 2004-10-18
Data variables:
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time datetime64[ns] 2004-10-19
Data variables:
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time datetime64[ns] 2004-10-20
Data variables:
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time datetime64[ns] 2004-10-21
Data variables:
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time datetime64[ns] 2004-10-22
Data variables:
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time datetime64[ns] 2004-10-23
Data variables:
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time datetime64[ns] 2004-10-24
Data variables:
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time datetime64[ns] 2004-10-25
Data variables:
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time datetime64[ns] 2004-10-26
Data variables:
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time datetime64[ns] 2004-10-27
Data variables:
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time datetime64[ns] 2004-10-28
Data variables:
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time datetime64[ns] 2004-10-29
Data variables:
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time datetime64[ns] 2004-10-30
Data variables:
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time datetime64[ns] 2004-10-31
Data variables:
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time datetime64[ns] 2004-11-01
Data variables:
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time datetime64[ns] 2004-11-02
Data variables:
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time datetime64[ns] 2004-11-03
Data variables:
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time datetime64[ns] 2004-11-04
Data variables:
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time datetime64[ns] 2004-11-05
Data variables:
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time datetime64[ns] 2004-11-06
Data variables:
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time datetime64[ns] 2004-11-07
Data variables:
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time datetime64[ns] 2004-11-08
Data variables:
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time datetime64[ns] 2004-11-09
Data variables:
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time datetime64[ns] 2004-11-10
Data variables:
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time datetime64[ns] 2004-11-11
Data variables:
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time datetime64[ns] 2004-11-12
Data variables:
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time datetime64[ns] 2004-11-13
Data variables:
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time datetime64[ns] 2004-11-14
Data variables:
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time datetime64[ns] 2004-11-15
Data variables:
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time datetime64[ns] 2004-11-16
Data variables:
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time datetime64[ns] 2004-11-17
Data variables:
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time datetime64[ns] 2004-11-18
Data variables:
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time datetime64[ns] 2004-11-19
Data variables:
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time datetime64[ns] 2004-11-20
Data variables:
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time datetime64[ns] 2004-11-21
Data variables:
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time datetime64[ns] 2004-11-22
Data variables:
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time datetime64[ns] 2004-11-23
Data variables:
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time datetime64[ns] 2004-11-24
Data variables:
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time datetime64[ns] 2004-11-25
Data variables:
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time datetime64[ns] 2004-11-26
Data variables:
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time datetime64[ns] 2004-11-27
Data variables:
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time datetime64[ns] 2004-11-28
Data variables:
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time datetime64[ns] 2004-11-29
Data variables:
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time datetime64[ns] 2004-11-30
Data variables:
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time datetime64[ns] 2004-12-01
Data variables:
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time datetime64[ns] 2004-12-02
Data variables:
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time datetime64[ns] 2004-12-03
Data variables:
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time datetime64[ns] 2004-12-04
Data variables:
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time datetime64[ns] 2004-12-05
Data variables:
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time datetime64[ns] 2004-12-06
Data variables:
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time datetime64[ns] 2004-12-07
Data variables:
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time datetime64[ns] 2004-12-08
Data variables:
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time datetime64[ns] 2004-12-09
Data variables:
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time datetime64[ns] 2004-12-10
Data variables:
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time datetime64[ns] 2004-12-11
Data variables:
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time datetime64[ns] 2004-12-12
Data variables:
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time datetime64[ns] 2004-12-13
Data variables:
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time datetime64[ns] 2004-12-14
Data variables:
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time datetime64[ns] 2004-12-15
Data variables:
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time datetime64[ns] 2004-12-16
Data variables:
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time datetime64[ns] 2004-12-17
Data variables:
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time datetime64[ns] 2004-12-18
Data variables:
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time datetime64[ns] 2004-12-19
Data variables:
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time datetime64[ns] 2004-12-20
Data variables:
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time datetime64[ns] 2004-12-21
Data variables:
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time datetime64[ns] 2004-12-22
Data variables:
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time datetime64[ns] 2004-12-23
Data variables:
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time datetime64[ns] 2004-12-24
Data variables:
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time datetime64[ns] 2004-12-25
Data variables:
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time datetime64[ns] 2004-12-26
Data variables:
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time datetime64[ns] 2004-12-27
Data variables:
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time datetime64[ns] 2004-12-28
Data variables:
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time datetime64[ns] 2004-12-29
Data variables:
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time datetime64[ns] 2004-12-30
Data variables:
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time datetime64[ns] 2004-12-31
Data variables:
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time datetime64[ns] 2005-01-01
Data variables:
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time datetime64[ns] 2005-01-02
Data variables:
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time datetime64[ns] 2005-01-03
Data variables:
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time datetime64[ns] 2005-01-04
Data variables:
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time datetime64[ns] 2005-01-05
Data variables:
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time datetime64[ns] 2005-01-06
Data variables:
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time datetime64[ns] 2005-01-07
Data variables:
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time datetime64[ns] 2005-01-08
Data variables:
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time datetime64[ns] 2005-01-09
Data variables:
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time datetime64[ns] 2005-01-10
Data variables:
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time datetime64[ns] 2005-01-11
Data variables:
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palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2005-01-12
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2005-01-13
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-01-14
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-01-15
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-01-16
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-01-17
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-01-18
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-01-19
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-01-20
Data variables:
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time datetime64[ns] 2005-01-21
Data variables:
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time datetime64[ns] 2005-01-22
Data variables:
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time datetime64[ns] 2005-01-23
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-01-24
Data variables:
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time datetime64[ns] 2005-01-25
Data variables:
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time datetime64[ns] 2005-01-26
Data variables:
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time datetime64[ns] 2005-01-27
Data variables:
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time datetime64[ns] 2005-01-28
Data variables:
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time datetime64[ns] 2005-01-29
Data variables:
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time datetime64[ns] 2005-01-30
Data variables:
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time datetime64[ns] 2005-01-31
Data variables:
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time datetime64[ns] 2005-02-01
Data variables:
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time datetime64[ns] 2005-02-02
Data variables:
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time datetime64[ns] 2005-02-03
Data variables:
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time datetime64[ns] 2005-02-04
Data variables:
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time datetime64[ns] 2005-02-05
Data variables:
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time datetime64[ns] 2005-02-06
Data variables:
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time datetime64[ns] 2005-02-07
Data variables:
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time datetime64[ns] 2005-02-08
Data variables:
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time datetime64[ns] 2005-02-09
Data variables:
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time datetime64[ns] 2005-02-10
Data variables:
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time datetime64[ns] 2005-02-11
Data variables:
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time datetime64[ns] 2005-02-12
Data variables:
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time datetime64[ns] 2005-02-13
Data variables:
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time datetime64[ns] 2005-02-14
Data variables:
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time datetime64[ns] 2005-02-15
Data variables:
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2005-02-16
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2005-02-17
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2005-02-18
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
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time datetime64[ns] 2005-02-19
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-02-20
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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time datetime64[ns] 2005-02-21
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2005-02-22
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2005-02-23
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
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* rgb (rgb) int64 0 1 2
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time datetime64[ns] 2005-02-24
Data variables:
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time datetime64[ns] 2005-02-25
Data variables:
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time datetime64[ns] 2005-02-26
Data variables:
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time datetime64[ns] 2005-02-27
Data variables:
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time datetime64[ns] 2005-02-28
Data variables:
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time datetime64[ns] 2005-03-01
Data variables:
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time datetime64[ns] 2005-03-02
Data variables:
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time datetime64[ns] 2005-03-03
Data variables:
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time datetime64[ns] 2005-03-04
Data variables:
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time datetime64[ns] 2005-03-05
Data variables:
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time datetime64[ns] 2005-03-06
Data variables:
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time datetime64[ns] 2005-03-07
Data variables:
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time datetime64[ns] 2005-03-08
Data variables:
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time datetime64[ns] 2005-03-09
Data variables:
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time datetime64[ns] 2005-03-10
Data variables:
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time datetime64[ns] 2005-03-11
Data variables:
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time datetime64[ns] 2005-03-12
Data variables:
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time datetime64[ns] 2005-03-13
Data variables:
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time datetime64[ns] 2005-03-14
Data variables:
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time datetime64[ns] 2005-03-15
Data variables:
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time datetime64[ns] 2005-03-16
Data variables:
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time datetime64[ns] 2005-03-17
Data variables:
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time datetime64[ns] 2005-03-18
Data variables:
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time datetime64[ns] 2005-03-19
Data variables:
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time datetime64[ns] 2005-03-20
Data variables:
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* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-21
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2005-03-22T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-22
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2005-03-23T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-23
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2005-03-24T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-24
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2005-03-25T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-25
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2005-03-26T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-26
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2005-03-27T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-27
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2005-03-28T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-28
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
(numpy.datetime64('2005-03-29T00:00:00.000000000'), <xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
time datetime64[ns] 2005-03-29
Data variables:
chlor_a (lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
palette (rgb, eightbitcolor) float64 -109.0 0.0 108.0 -112.0 0.0 ...),
...]
Now we count up the number of valid points in each snapshot and divide by the total number of ocean points.
In [22]:
'''
<xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 144, lon: 276, rgb: 3, time: 4748)
'''
ds_daily.groupby('time').count() # information from original data
Out[22]:
<xarray.Dataset>
Dimensions: (time: 5295)
Coordinates:
* time (time) datetime64[ns] 2002-07-04 2002-07-05 2002-07-06 ...
Data variables:
chlor_a (time) int64 658 1170 1532 2798 2632 1100 1321 636 2711 1163 ...
palette (time) int64 768 768 768 768 768 768 768 768 768 768 768 768 ...
In [23]:
ds_daily.chlor_a.groupby('time').count()/float(num_ocean_points)
Out[23]:
<xarray.DataArray 'chlor_a' (time: 5295)>
array([ 0.01053255, 0.01872809, 0.02452259, ..., 0. ,
0. , 0. ])
Coordinates:
* time (time) datetime64[ns] 2002-07-04 2002-07-05 2002-07-06 ...
In [26]:
count_8day, count_2day, count_daily = [ds.chlor_a.groupby('time').count()/float(num_ocean_points)
for ds in (ds_8day, ds_2day, ds_daily)]
In [27]:
#count_8day = ds_8day.chl_ocx.groupby('time').count()/float(num_ocean_points)
#coundt_daily = ds_daily.chl_ocx.groupby('time').count()/float(num_ocean_points)
#count_8day, coundt_daily = [ds.chl_ocx.groupby('time').count()/float(num_ocean_points)
# for ds in ds_8day, ds_daily] # not work in python 3
In [28]:
plt.figure(figsize=(12,4))
count_8day.plot(color='k')
count_daily.plot(color='r')
count_2day.plot(color='b')
plt.legend(['8 day','daily', '2 day' ])
Out[28]:
<matplotlib.legend.Legend at 0x1cb1ee080>
In [29]:
count_8day_clim, coundt_daily_clim = [count.groupby('time.month').mean() # monthly data
for count in (count_8day, count_daily)]
In [30]:
# mean value of the monthly data on the count of nonzeros
plt.figure(figsize=(12,4))
count_8day_clim.plot(color='k')
coundt_daily_clim.plot(color='r')
plt.legend(['8 day', 'daily'])
Out[30]:
<matplotlib.legend.Legend at 0x1cb352e80>
In [31]:
target_date = '2003-02-15'
plt.figure(figsize=(8,6))
ds_8day.chlor_a.sel(time=target_date, method='nearest').plot(norm=LogNorm())
Out[31]:
<matplotlib.collections.QuadMesh at 0x12e1bbd68>
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/matplotlib/colors.py:1022: RuntimeWarning: invalid value encountered in less_equal
mask |= resdat <= 0
In [32]:
plt.figure(figsize=(8,6))
ds_daily.chlor_a.sel(time=target_date, method='nearest').plot(norm=LogNorm())
Out[32]:
<matplotlib.collections.QuadMesh at 0x1cb89be48>
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/matplotlib/colors.py:1022: RuntimeWarning: invalid value encountered in less_equal
mask |= resdat <= 0
In [33]:
ds_daily.chlor_a[0].sel_points(lon=[65, 70], lat=[16, 18], method='nearest') # the time is selected!
#ds_daily.chl_ocx[0].sel_points(time= times, lon=lons, lat=times, method='nearest')
Out[33]:
<xarray.DataArray 'chlor_a' (points: 2)>
array([ nan, nan])
Coordinates:
time datetime64[ns] 2002-07-04
lat (points) float64 16.04 18.04
lon (points) float64 65.04 70.04
* points (points) int64 0 1
In [34]:
ds_daily.chlor_a.sel_points?
In [35]:
ds_2day = ds_daily.resample('2D', dim='time')
ds_2day
Out[35]:
<xarray.Dataset>
Dimensions: (eightbitcolor: 256, lat: 276, lon: 360, rgb: 3, time: 2648)
Coordinates:
* lat (lat) float64 27.96 27.87 27.79 27.71 27.62 27.54 27.46 ...
* lon (lon) float64 45.04 45.13 45.21 45.29 45.38 45.46 45.54 ...
* rgb (rgb) int64 0 1 2
* eightbitcolor (eightbitcolor) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...
* time (time) datetime64[ns] 2002-07-04 2002-07-06 2002-07-08 ...
Data variables:
chlor_a (time, lat, lon) float64 nan nan nan nan nan nan nan nan ...
palette (time, rgb, eightbitcolor) float64 -109.0 0.0 108.0 ...
In [36]:
plt.figure(figsize=(8,6))
ds_2day.chlor_a.sel(time=target_date, method='nearest').plot(norm=LogNorm())
Out[36]:
<matplotlib.collections.QuadMesh at 0x24ba252e8>
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/matplotlib/colors.py:1022: RuntimeWarning: invalid value encountered in less_equal
mask |= resdat <= 0
In [39]:
# check the range for the longitude
print(ds_2day.lon.min(),'\n' ,ds_2day.lat.min())
<xarray.DataArray 'lon' ()>
array(45.04166793823242)
<xarray.DataArray 'lat' ()>
array(5.041661739349365)
In [40]:
# in the following we deal with the data from the gdp float
from buyodata import buoydata
import os
In [41]:
# a list of files
#fnames = ['./gdp_float/buoydata_1_5000.dat','./gdp_float/buoydata_5001_10000.dat','./gdp_float/buoydata_10001_jun15.dat']
# not much data in the first file belong to Arabian Sea and after 2002-07-04
fnames = ['./gdp_float/buoydata_1_5000.dat','./gdp_float/buoydata_5001_10000.dat']
# read them and cancatenate them into one DataFrame
df = pd.concat([buoydata.read_buoy_data(f) for f in fnames]) # around 4~5 minutes
In [42]:
df.head()
Out[42]:
time
id
lat
lon
temp
ve
vn
spd
var_lat
var_lon
var_tmp
0
1988-03-08 00:00:00
7702986
-1.320
274.848
25.473
NaN
NaN
NaN
0.000025
0.000034
0.004518
1
1988-03-08 06:00:00
7702986
-1.242
274.772
25.224
-49.214
36.778
61.438
0.000058
0.000087
0.007215
2
1988-03-08 12:00:00
7702986
-1.176
274.657
25.095
-57.514
28.439
64.161
0.000020
0.000026
0.005613
3
1988-03-08 18:00:00
7702986
-1.131
274.548
25.545
-48.625
28.747
56.487
0.000049
0.000072
0.005837
4
1988-03-09 00:00:00
7702986
-1.064
274.468
25.870
-50.787
34.399
61.340
0.000004
0.000006
0.003111
In [43]:
#mask = df.time>='2002-07-04' # we only have data after this data for cho_ocx
dfvv = df[df.time>='2002-07-04']
In [44]:
sum(dfvv.time<'2002-07-04') # recheck whether the time is
Out[44]:
0
In [45]:
# process the data so that the longitude are all >0
print('before processing, the minimum longitude is%f4.3 and maximum is %f4.3' % (dfvv.lon.min(),dfvv.lon.max()))
mask = dfvv.lon<0
dfvv.lon[mask] = dfvv.loc[mask].lon + 360
print('after processing, the minimum longitude is %f4.3 and maximum is %f4.3' % (dfvv.lon.min(),dfvv.lon.max()) )
before processing, the minimum longitude is0.0000004.3 and maximum is 360.0000004.3
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/ipykernel/__main__.py:4: SettingWithCopyWarning:
A value is trying to be set on a copy of a slice from a DataFrame
See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
after processing, the minimum longitude is 0.0000004.3 and maximum is 360.0000004.3
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/pandas/core/generic.py:4695: SettingWithCopyWarning:
A value is trying to be set on a copy of a slice from a DataFrame
See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
self._update_inplace(new_data)
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/IPython/core/interactiveshell.py:2881: SettingWithCopyWarning:
A value is trying to be set on a copy of a slice from a DataFrame
See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
exec(code_obj, self.user_global_ns, self.user_ns)
In [46]:
dfvv.describe()
Out[46]:
id
lat
lon
temp
ve
vn
spd
var_lat
var_lon
var_tmp
count
7.073300e+06
7.031400e+06
7.031400e+06
6.586678e+06
7.024293e+06
7.024293e+06
7.024293e+06
7.073300e+06
7.073300e+06
7.073300e+06
mean
3.336960e+05
-5.552521e+00
2.170968e+02
2.045166e+01
-8.665476e-01
4.587197e-01
2.616451e+01
5.923900e+00
5.924337e+00
6.880058e+01
std
1.022293e+06
3.183803e+01
9.545828e+01
7.660974e+00
2.510090e+01
1.997282e+01
1.858355e+01
7.673717e+01
7.673714e+01
2.531077e+02
min
2.578000e+03
-7.322200e+01
0.000000e+00
-5.081000e+00
-2.841550e+02
-2.601400e+02
0.000000e+00
1.243800e-06
-3.941600e-02
1.002200e-03
25%
3.692700e+04
-3.190000e+01
1.582970e+02
1.580000e+01
-1.556700e+01
-1.053900e+01
1.342200e+01
5.732200e-06
8.877000e-06
1.504500e-03
50%
4.479400e+04
-1.138200e+01
2.189300e+02
2.220400e+01
-1.280000e+00
2.100000e-01
2.223400e+01
1.128900e-05
1.828800e-05
1.847700e-03
75%
5.468000e+04
2.328300e+01
3.067940e+02
2.695000e+01
1.302300e+01
1.119100e+01
3.409000e+01
2.673300e-05
4.589000e-05
2.944800e-03
max
9.914471e+06
7.653900e+01
3.600000e+02
3.408600e+01
2.924850e+02
2.770340e+02
2.965070e+02
1.000000e+03
1.000000e+03
1.000000e+03
In [47]:
# Select only the arabian sea region
arabian_sea = (dfvv.lon > 45) & (dfvv.lon< 75) & (dfvv.lat> 5) & (dfvv.lat <28)
# arabian_sea = {'lon': slice(45,75), 'lat': slice(5,28)} # later use this longitude and latitude
floats = dfvv.loc[arabian_sea] # directly use mask
print('dfvv.shape is %s, floats.shape is %s' % (dfvv.shape, floats.shape) )
dfvv.shape is (7073300, 11), floats.shape is (23910, 11)
In [48]:
# visualization for the global and arabian sea region
# visualize the float around global region
fig, ax = plt.subplots(figsize=(12,10))
dfvv.plot(kind='scatter', x='lon', y='lat', c='temp', cmap='RdBu_r', edgecolor='none', ax=ax)
# visualize the float around the arabian sea region
fig, ax = plt.subplots(figsize=(12,10))
floats.plot(kind='scatter', x='lon', y='lat', c='temp', cmap='RdBu_r', edgecolor='none', ax=ax)
Out[48]:
<matplotlib.axes._subplots.AxesSubplot at 0x15f8b8358>
In [49]:
# pands dataframe cannot do the resamplingn properly
# cause we are really indexing on ['time','id'], pandas.dataframe.resample cannot do this
# TypeError: Only valid with DatetimeIndex, TimedeltaIndex or PeriodIndex, but got an instance of 'MultiIndex'
print()
In [50]:
# dump the surface floater data from pandas.dataframe to xarray.dataset
floatsDS = xr.Dataset.from_dataframe(floats.set_index(['time','id']) ) # set time & id as the index); use reset_index to revert this operation
floatsDS
Out[50]:
<xarray.Dataset>
Dimensions: (id: 60, time: 5705)
Coordinates:
* time (time) datetime64[ns] 2002-07-04 2002-07-04T06:00:00 ...
* id (id) int64 7574 10206 10208 11089 15703 15707 27069 27139 28842 ...
Data variables:
lat (time, id) float64 nan 16.3 14.03 16.4 14.04 nan 20.11 nan ...
lon (time, id) float64 nan 66.23 69.48 64.58 69.51 nan 68.55 nan ...
temp (time, id) float64 nan nan nan 28.0 28.53 nan 28.93 nan 27.81 ...
ve (time, id) float64 nan 8.68 5.978 6.286 4.844 nan 32.9 nan ...
vn (time, id) float64 nan -13.18 -18.05 -7.791 -17.47 nan 15.81 ...
spd (time, id) float64 nan 15.78 19.02 10.01 18.13 nan 36.51 nan ...
var_lat (time, id) float64 nan 0.0002661 5.01e-05 5.018e-05 5.024e-05 ...
var_lon (time, id) float64 nan 0.0006854 8.851e-05 9.018e-05 8.968e-05 ...
var_tmp (time, id) float64 nan 1e+03 1e+03 0.003733 0.0667 nan 0.001683 ...
In [51]:
# resample on the xarray.dataset onto two-day frequency
floatsDS_2D =floatsDS.resample('2D', dim='time')
floatsDS_2D
Out[51]:
<xarray.Dataset>
Dimensions: (id: 60, time: 973)
Coordinates:
* id (id) int64 7574 10206 10208 11089 15703 15707 27069 27139 28842 ...
* time (time) datetime64[ns] 2002-07-04 2002-07-06 2002-07-08 ...
Data variables:
lon (time, id) float64 nan 66.33 69.55 64.68 69.58 nan 68.74 nan ...
ve (time, id) float64 nan 13.06 8.505 12.17 8.686 nan 26.96 nan ...
vn (time, id) float64 nan -8.651 -20.75 -7.287 -20.2 nan 7.892 nan ...
temp (time, id) float64 nan nan nan 27.95 28.55 nan 29.01 nan 27.7 ...
spd (time, id) float64 nan 15.92 22.6 14.58 22.25 nan 28.45 nan ...
var_tmp (time, id) float64 nan 1e+03 1e+03 0.003688 0.07467 nan ...
var_lon (time, id) float64 nan 0.002281 9.329e-05 0.0001497 9.757e-05 ...
lat (time, id) float64 nan 16.23 13.89 16.35 13.9 nan 20.17 nan ...
var_lat (time, id) float64 nan 0.0007236 5.197e-05 7.609e-05 5.339e-05 ...
In [52]:
# transfer it back to pandas.dataframe for plotting
floatsDF_2D = floatsDS_2D.to_dataframe()
floatsDF_2D
Out[52]:
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
id
time
7574
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-06
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-08
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-10
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-12
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-14
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-16
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-18
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-20
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-22
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-24
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-26
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-28
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-07-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-01
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-03
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-05
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-07
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-09
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-11
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-13
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-15
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-17
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2002-08-19
NaN
NaN
NaN
NaN
NaN
NaN
NaN
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NaN
2002-08-21
NaN
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2002-08-23
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2002-08-25
NaN
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2002-08-27
NaN
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2002-08-29
NaN
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2002-08-31
NaN
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2444350
2007-09-02
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2007-09-04
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2007-09-06
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2007-09-08
NaN
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2007-09-10
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2007-09-12
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2007-09-14
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2007-09-16
NaN
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2007-09-18
NaN
NaN
NaN
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NaN
2007-09-20
NaN
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2007-09-22
NaN
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2007-09-24
NaN
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2007-09-26
NaN
NaN
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2007-09-28
NaN
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NaN
2007-09-30
NaN
NaN
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2007-10-02
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2007-10-04
NaN
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NaN
NaN
NaN
NaN
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NaN
2007-10-06
NaN
NaN
NaN
NaN
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NaN
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2007-10-08
NaN
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NaN
NaN
NaN
NaN
NaN
2007-10-10
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2007-10-12
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2007-10-14
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2007-10-16
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2007-10-18
NaN
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NaN
NaN
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NaN
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NaN
NaN
2007-10-20
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2007-10-22
NaN
NaN
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NaN
NaN
2007-10-24
NaN
NaN
NaN
NaN
NaN
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2007-10-26
NaN
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NaN
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NaN
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2007-10-28
NaN
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2007-10-30
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58380 rows × 9 columns
In [53]:
floatsDF_2D = floatsDF_2D.reset_index()
floatsDF_2D
Out[53]:
id
time
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
0
7574
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
1
7574
2002-07-06
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2
7574
2002-07-08
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
3
7574
2002-07-10
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
4
7574
2002-07-12
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
5
7574
2002-07-14
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
6
7574
2002-07-16
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
7
7574
2002-07-18
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
8
7574
2002-07-20
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
9
7574
2002-07-22
NaN
NaN
NaN
NaN
NaN
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NaN
NaN
NaN
10
7574
2002-07-24
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
11
7574
2002-07-26
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
12
7574
2002-07-28
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
13
7574
2002-07-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
14
7574
2002-08-01
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
15
7574
2002-08-03
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
16
7574
2002-08-05
NaN
NaN
NaN
NaN
NaN
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NaN
NaN
17
7574
2002-08-07
NaN
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NaN
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NaN
NaN
NaN
18
7574
2002-08-09
NaN
NaN
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NaN
NaN
19
7574
2002-08-11
NaN
NaN
NaN
NaN
NaN
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NaN
NaN
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20
7574
2002-08-13
NaN
NaN
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NaN
NaN
NaN
NaN
21
7574
2002-08-15
NaN
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NaN
22
7574
2002-08-17
NaN
NaN
NaN
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NaN
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23
7574
2002-08-19
NaN
NaN
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NaN
NaN
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NaN
NaN
NaN
24
7574
2002-08-21
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
25
7574
2002-08-23
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
26
7574
2002-08-25
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
27
7574
2002-08-27
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
28
7574
2002-08-29
NaN
NaN
NaN
NaN
NaN
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29
7574
2002-08-31
NaN
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...
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58350
2444350
2007-09-02
NaN
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58351
2444350
2007-09-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
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NaN
58352
2444350
2007-09-06
NaN
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NaN
NaN
NaN
NaN
NaN
NaN
58353
2444350
2007-09-08
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58354
2444350
2007-09-10
NaN
NaN
NaN
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58355
2444350
2007-09-12
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58356
2444350
2007-09-14
NaN
NaN
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NaN
NaN
NaN
NaN
NaN
NaN
58357
2444350
2007-09-16
NaN
NaN
NaN
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NaN
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NaN
58358
2444350
2007-09-18
NaN
NaN
NaN
NaN
NaN
NaN
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NaN
58359
2444350
2007-09-20
NaN
NaN
NaN
NaN
NaN
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NaN
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58360
2444350
2007-09-22
NaN
NaN
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NaN
NaN
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58361
2444350
2007-09-24
NaN
NaN
NaN
NaN
NaN
NaN
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NaN
NaN
58362
2444350
2007-09-26
NaN
NaN
NaN
NaN
NaN
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58363
2444350
2007-09-28
NaN
NaN
NaN
NaN
NaN
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NaN
NaN
NaN
58364
2444350
2007-09-30
NaN
NaN
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NaN
NaN
NaN
NaN
NaN
58365
2444350
2007-10-02
NaN
NaN
NaN
NaN
NaN
NaN
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NaN
58366
2444350
2007-10-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58367
2444350
2007-10-06
NaN
NaN
NaN
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NaN
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NaN
NaN
NaN
58368
2444350
2007-10-08
NaN
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NaN
NaN
58369
2444350
2007-10-10
NaN
NaN
NaN
NaN
NaN
NaN
NaN
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NaN
58370
2444350
2007-10-12
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58371
2444350
2007-10-14
NaN
NaN
NaN
NaN
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NaN
NaN
58372
2444350
2007-10-16
NaN
NaN
NaN
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NaN
NaN
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NaN
58373
2444350
2007-10-18
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58374
2444350
2007-10-20
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58375
2444350
2007-10-22
NaN
NaN
NaN
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NaN
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NaN
58376
2444350
2007-10-24
NaN
NaN
NaN
NaN
NaN
NaN
NaN
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58377
2444350
2007-10-26
NaN
NaN
NaN
NaN
NaN
NaN
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NaN
NaN
58378
2444350
2007-10-28
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58379
2444350
2007-10-30
NaN
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NaN
NaN
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NaN
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NaN
58380 rows × 11 columns
In [54]:
# visualize the 2D-floats around arabian region
fig, ax = plt.subplots(figsize=(12,10))
floatsDF_2D.plot(kind='scatter', x='lon', y='lat', c='temp', cmap='RdBu_r', edgecolor='none', ax=ax)
Out[54]:
<matplotlib.axes._subplots.AxesSubplot at 0x1cb1de828>
In [ ]:
In [55]:
# get the value for the chllorophy for each data entry
floats_timeorder = floatsDF_2D.sort_values(['time','id'],ascending=True)
In [56]:
floats_timeorder # check whether it is time ordered!!
Out[56]:
id
time
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
0
7574
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
973
10206
2002-07-04
66.330375
13.064500
-8.650875
NaN
15.915625
1000.000000
0.002281
16.229625
0.000724
1946
10208
2002-07-04
69.552375
8.505125
-20.755000
NaN
22.603500
1000.000000
0.000093
13.891875
0.000052
2919
11089
2002-07-04
64.683750
12.168000
-7.286875
27.954125
14.582375
0.003688
0.000150
16.354375
0.000076
3892
15703
2002-07-04
69.583125
8.685875
-20.195125
28.552250
22.251500
0.074665
0.000098
13.903250
0.000053
4865
15707
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
5838
27069
2002-07-04
68.737500
26.958750
7.891750
29.012000
28.453250
0.001705
0.000108
20.169750
0.000058
6811
27139
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
7784
28842
2002-07-04
60.694625
10.499125
-0.333875
27.701750
23.813750
0.003176
0.000254
18.878875
0.000118
8757
34159
2002-07-04
58.914250
27.354250
4.591750
NaN
28.099500
1000.000000
0.000119
12.548125
0.000063
9730
34210
2002-07-04
56.925000
-9.666750
-13.510125
26.694875
17.964875
0.003670
0.000168
6.476750
0.000081
10703
34211
2002-07-04
67.929125
20.618125
-12.301625
28.278000
24.182875
0.003506
0.000084
8.602375
0.000047
11676
34212
2002-07-04
64.750250
14.641875
13.108750
28.470750
20.799125
0.003616
0.000090
6.232000
0.000050
12649
34223
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
13622
34310
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
14595
34311
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
15568
34312
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
16541
34314
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
17514
34315
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
18487
34374
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
19460
34708
2002-07-04
59.691500
47.792000
2.521375
27.185500
47.992125
0.001837
0.000096
10.167500
0.000052
20433
34709
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
21406
34710
2002-07-04
49.905250
-34.754625
24.402875
30.910625
48.126875
0.001782
0.000067
12.933625
0.000038
22379
34714
2002-07-04
63.649625
38.417625
12.527125
27.686625
40.572875
0.001824
0.000109
13.594750
0.000058
23352
34716
2002-07-04
65.384500
38.942875
-0.596250
28.801750
39.294625
0.001819
0.000094
7.491000
0.000052
24325
34718
2002-07-04
72.396375
21.462750
-24.061500
29.153625
32.457375
0.001687
0.000085
16.328750
0.000048
25298
34719
2002-07-04
70.946250
19.908500
-7.665125
28.922500
22.295250
0.001596
0.000094
17.764375
0.000052
26271
34720
2002-07-04
69.187000
10.269000
-36.005250
28.644250
37.705250
0.001838
0.000113
14.825375
0.000061
27244
34721
2002-07-04
65.375250
8.379375
-9.067750
27.943750
13.409375
0.001730
0.000120
17.190250
0.000063
28217
34722
2002-07-04
70.472250
10.214125
-3.672500
28.734000
11.342750
0.001757
0.000126
11.729625
0.000067
...
...
...
...
...
...
...
...
...
...
...
...
30162
34723
2007-10-30
NaN
NaN
NaN
NaN
NaN
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NaN
31135
36530
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
32108
36537
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
33081
43598
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
34054
43740
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
35027
43743
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
36000
43744
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
36973
43746
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
37946
43748
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
38919
43995
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
39892
46470
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
40865
46471
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
41838
46472
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
42811
53352
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
43784
53358
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
44757
53363
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
45730
53364
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
46703
53365
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
47676
53366
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
48649
53367
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
49622
53404
2007-10-30
53.022400
-7.558000
-11.945500
26.730200
29.595750
0.001492
0.000026
12.321200
0.000014
50595
54371
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
51568
57939
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
52541
57940
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
53514
59371
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
54487
59372
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
55460
59373
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
56433
2134712
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
57406
2343739
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58379
2444350
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58380 rows × 11 columns
In [57]:
# a. loops through entries in the float
# b. add the chl data to the floater data
# c. then take the difference for the lagrange rate of change
In [58]:
# a little test for the api in loops for the dataframe
# check df.itertuples? it is faster and preserves the data format
'''
chl_ocx=[]
for row in floats_timeorder.itertuples():
#print(row)
#print('row.time = %s, row.id=%d, row.lon=%4.3f, row.lat=%4.3f' % (row.time,row.id,row.lon,row.lat) )
tmp=ds_2day.chl_ocx.sel_points(time=[row.time],lon=[row.lon], lat=[row.lat], method='nearest') # interpolation
chl_ocx.append(tmp)
floats_timeorder['chl_ocx'] = pd.Series(chl_ocx, index=floats_timeorder.index)
chl_ocx[0].to_series
'''
Out[58]:
"\nchl_ocx=[]\nfor row in floats_timeorder.itertuples():\n #print(row)\n #print('row.time = %s, row.id=%d, row.lon=%4.3f, row.lat=%4.3f' % (row.time,row.id,row.lon,row.lat) )\n tmp=ds_2day.chl_ocx.sel_points(time=[row.time],lon=[row.lon], lat=[row.lat], method='nearest') # interpolation\n chl_ocx.append(tmp)\nfloats_timeorder['chl_ocx'] = pd.Series(chl_ocx, index=floats_timeorder.index)\nchl_ocx[0].to_series\n"
In [59]:
# this one line avoid the list above
tmp = ds_2day.chlor_a.sel_points(time=list(floats_timeorder.time),lon=list(floats_timeorder.lon), lat=list(floats_timeorder.lat), method='nearest')
print('the count of nan vaues in tmp is',tmp.to_series().isnull().sum())
# tmp.to_series() to transfer it from xarray dataset to series
floats_timeorder['chlor_a'] = pd.Series(np.array(tmp.to_series()), index=floats_timeorder.index)
print("after editing the dataframe the non values in 'chlor_a' is",floats_timeorder.chlor_a.isnull().sum() )
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/pandas/indexes/base.py:2352: RuntimeWarning: invalid value encountered in less
indexer = np.where(op(left_distances, right_distances) |
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/pandas/indexes/base.py:2352: RuntimeWarning: invalid value encountered in less_equal
indexer = np.where(op(left_distances, right_distances) |
the count of nan vaues in tmp is 57795
after editing the dataframe the non values in 'chlor_a' is 57795
In [60]:
# take a look at the data
floats_timeorder
Out[60]:
id
time
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
chlor_a
0
7574
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
973
10206
2002-07-04
66.330375
13.064500
-8.650875
NaN
15.915625
1000.000000
0.002281
16.229625
0.000724
NaN
1946
10208
2002-07-04
69.552375
8.505125
-20.755000
NaN
22.603500
1000.000000
0.000093
13.891875
0.000052
NaN
2919
11089
2002-07-04
64.683750
12.168000
-7.286875
27.954125
14.582375
0.003688
0.000150
16.354375
0.000076
NaN
3892
15703
2002-07-04
69.583125
8.685875
-20.195125
28.552250
22.251500
0.074665
0.000098
13.903250
0.000053
NaN
4865
15707
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
5838
27069
2002-07-04
68.737500
26.958750
7.891750
29.012000
28.453250
0.001705
0.000108
20.169750
0.000058
NaN
6811
27139
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
7784
28842
2002-07-04
60.694625
10.499125
-0.333875
27.701750
23.813750
0.003176
0.000254
18.878875
0.000118
NaN
8757
34159
2002-07-04
58.914250
27.354250
4.591750
NaN
28.099500
1000.000000
0.000119
12.548125
0.000063
NaN
9730
34210
2002-07-04
56.925000
-9.666750
-13.510125
26.694875
17.964875
0.003670
0.000168
6.476750
0.000081
0.207322
10703
34211
2002-07-04
67.929125
20.618125
-12.301625
28.278000
24.182875
0.003506
0.000084
8.602375
0.000047
NaN
11676
34212
2002-07-04
64.750250
14.641875
13.108750
28.470750
20.799125
0.003616
0.000090
6.232000
0.000050
NaN
12649
34223
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
13622
34310
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
14595
34311
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
15568
34312
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
16541
34314
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
17514
34315
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
18487
34374
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
19460
34708
2002-07-04
59.691500
47.792000
2.521375
27.185500
47.992125
0.001837
0.000096
10.167500
0.000052
NaN
20433
34709
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
21406
34710
2002-07-04
49.905250
-34.754625
24.402875
30.910625
48.126875
0.001782
0.000067
12.933625
0.000038
NaN
22379
34714
2002-07-04
63.649625
38.417625
12.527125
27.686625
40.572875
0.001824
0.000109
13.594750
0.000058
NaN
23352
34716
2002-07-04
65.384500
38.942875
-0.596250
28.801750
39.294625
0.001819
0.000094
7.491000
0.000052
NaN
24325
34718
2002-07-04
72.396375
21.462750
-24.061500
29.153625
32.457375
0.001687
0.000085
16.328750
0.000048
NaN
25298
34719
2002-07-04
70.946250
19.908500
-7.665125
28.922500
22.295250
0.001596
0.000094
17.764375
0.000052
NaN
26271
34720
2002-07-04
69.187000
10.269000
-36.005250
28.644250
37.705250
0.001838
0.000113
14.825375
0.000061
NaN
27244
34721
2002-07-04
65.375250
8.379375
-9.067750
27.943750
13.409375
0.001730
0.000120
17.190250
0.000063
NaN
28217
34722
2002-07-04
70.472250
10.214125
-3.672500
28.734000
11.342750
0.001757
0.000126
11.729625
0.000067
NaN
...
...
...
...
...
...
...
...
...
...
...
...
...
30162
34723
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
31135
36530
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
32108
36537
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
33081
43598
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
34054
43740
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
35027
43743
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
36000
43744
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
36973
43746
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
37946
43748
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
38919
43995
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
39892
46470
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
40865
46471
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
41838
46472
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
42811
53352
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
43784
53358
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
44757
53363
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
45730
53364
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
46703
53365
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
47676
53366
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
48649
53367
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
49622
53404
2007-10-30
53.022400
-7.558000
-11.945500
26.730200
29.595750
0.001492
0.000026
12.321200
0.000014
NaN
50595
54371
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
51568
57939
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
52541
57940
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
53514
59371
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
54487
59372
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
55460
59373
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
56433
2134712
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
57406
2343739
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58379
2444350
2007-10-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58380 rows × 12 columns
In [61]:
######
# test for how to add a column to the dataframe
######
pd.Series(np.array(tmp.to_series())[:10], index = [3,4,5,6,7,8,9,10,15,22])
# if not make the first argument as pure np.array, then the index will based on the first entry!!!
#pd.Series(tmp.to_series()[:10], index = [3,4,5,6,7,8,9,10,15,22]) # does use this function
Out[61]:
3 NaN
4 NaN
5 NaN
6 NaN
7 NaN
8 NaN
9 NaN
10 NaN
15 NaN
22 NaN
dtype: float64
In [62]:
# in the following we deal with the data from the gdp float
from buyodata import buoydata
import os
In [63]:
# a list of files
fnamesAll = ['./gdp_float/buoydata_1_5000.dat','./gdp_float/buoydata_5001_10000.dat','./gdp_float/buoydata_10001_15000.dat','./gdp_float/buoydata_15001_jun16.dat']
#fnames = ['./gdp_float/buoydata_1_5000.dat']
In [64]:
# read them and cancatenate them into one DataFrame
dfAll = pd.concat([buoydata.read_buoy_data(f) for f in fnamesAll]) # around 4~5 minutes
#mask = df.time>='2002-07-04' # we only have data after this data for chlor_a
dfvvAll = dfAll[dfAll.time>='2002-07-04']
sum(dfvvAll.time<'2002-07-04') # recheck whether the time is
Out[64]:
0
In [65]:
print()
In [66]:
# process the data so that the longitude are all >0
print('before processing, the minimum longitude is%f4.3 and maximum is %f4.3' % (dfvvAll.lon.min(), dfvvAll.lon.max()))
mask = dfvvAll.lon<0
dfvvAll.lon[mask] = dfvvAll.loc[mask].lon + 360
print('after processing, the minimum longitude is %f4.3 and maximum is %f4.3' % (dfvvAll.lon.min(),dfvvAll.lon.max()) )
dfvvAll.describe()
before processing, the minimum longitude is0.0000004.3 and maximum is 360.0000004.3
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/ipykernel/__main__.py:4: SettingWithCopyWarning:
A value is trying to be set on a copy of a slice from a DataFrame
See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/pandas/core/generic.py:4695: SettingWithCopyWarning:
A value is trying to be set on a copy of a slice from a DataFrame
See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
self._update_inplace(new_data)
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/IPython/core/interactiveshell.py:2881: SettingWithCopyWarning:
A value is trying to be set on a copy of a slice from a DataFrame
See the caveats in the documentation: http://pandas.pydata.org/pandas-docs/stable/indexing.html#indexing-view-versus-copy
exec(code_obj, self.user_global_ns, self.user_ns)
after processing, the minimum longitude is 0.0000004.3 and maximum is 360.0000004.3
Out[66]:
id
lat
lon
temp
ve
vn
spd
var_lat
var_lon
var_tmp
count
2.147732e+07
2.131997e+07
2.131997e+07
1.986179e+07
2.129142e+07
2.129142e+07
2.129142e+07
2.147732e+07
2.147732e+07
2.147732e+07
mean
1.765662e+06
-2.263128e+00
2.124412e+02
1.986121e+01
2.454172e-01
4.708192e-01
2.613427e+01
7.326258e+00
7.326555e+00
7.522298e+01
std
9.452835e+06
3.401115e+01
9.746941e+01
8.339498e+00
2.525050e+01
2.052160e+01
1.939087e+01
8.527853e+01
8.527851e+01
2.637454e+02
min
2.578000e+03
-7.764700e+01
0.000000e+00
-1.685000e+01
-2.916220e+02
-2.601400e+02
0.000000e+00
5.268300e-07
-3.941600e-02
1.001300e-03
25%
4.897500e+04
-3.186000e+01
1.490720e+02
1.437300e+01
-1.411400e+01
-1.044700e+01
1.290300e+01
4.366500e-06
7.512600e-06
1.435700e-03
50%
7.141300e+04
-4.920000e+00
2.153940e+02
2.214400e+01
-5.560000e-01
1.970000e-01
2.176700e+01
8.833600e-06
1.495800e-05
1.691700e-03
75%
1.094330e+05
2.756000e+01
3.064370e+02
2.688900e+01
1.356100e+01
1.109300e+01
3.405900e+01
1.833300e-05
3.627900e-05
2.294200e-03
max
6.399288e+07
8.989900e+01
3.600000e+02
4.595000e+01
4.417070e+02
2.783220e+02
4.421750e+02
1.000000e+03
1.000000e+03
1.000000e+03
In [67]:
# Select only the arabian sea region
arabian_sea = (dfvvAll.lon > 45) & (dfvvAll.lon< 75) & (dfvvAll.lat> 5) & (dfvvAll.lat <28)
# arabian_sea = {'lon': slice(45,75), 'lat': slice(5,28)} # later use this longitude and latitude
floatsAll = dfvvAll.loc[arabian_sea] # directly use mask
print('dfvvAll.shape is %s, floatsAll.shape is %s' % (dfvvAll.shape, floatsAll.shape) )
# visualize the float around global region
fig, ax = plt.subplots(figsize=(12,10))
dfvvAll.plot(kind='scatter', x='lon', y='lat', c='temp', cmap='RdBu_r', edgecolor='none', ax=ax)
# visualize the float around the arabian sea region
fig, ax = plt.subplots(figsize=(12,10))
floatsAll.plot(kind='scatter', x='lon', y='lat', c='temp', cmap='RdBu_r', edgecolor='none', ax=ax)
dfvvAll.shape is (21477317, 11), floatsAll.shape is (111894, 11)
Out[67]:
<matplotlib.axes._subplots.AxesSubplot at 0x3ed1cc4e0>
In [68]:
# pands dataframe cannot do the resamplingn properly
# cause we are really indexing on ['time','id'], pandas.dataframe.resample cannot do this
# TypeError: Only valid with DatetimeIndex, TimedeltaIndex or PeriodIndex, but got an instance of 'MultiIndex'
print()
In [69]:
# dump the surface floater data from pandas.dataframe to xarray.dataset
floatsDSAll = xr.Dataset.from_dataframe(floatsAll.set_index(['time','id']) ) # set time & id as the index); use reset_index to revert this operation
floatsDSAll
Out[69]:
<xarray.Dataset>
Dimensions: (id: 259, time: 17499)
Coordinates:
* time (time) datetime64[ns] 2002-07-04 2002-07-04T06:00:00 ...
* id (id) int64 7574 10206 10208 11089 15703 15707 27069 27139 28842 ...
Data variables:
lat (time, id) float64 nan 16.3 14.03 16.4 14.04 nan 20.11 nan ...
lon (time, id) float64 nan 66.23 69.48 64.58 69.51 nan 68.55 nan ...
temp (time, id) float64 nan nan nan 28.0 28.53 nan 28.93 nan 27.81 ...
ve (time, id) float64 nan 8.68 5.978 6.286 4.844 nan 32.9 nan ...
vn (time, id) float64 nan -13.18 -18.05 -7.791 -17.47 nan 15.81 ...
spd (time, id) float64 nan 15.78 19.02 10.01 18.13 nan 36.51 nan ...
var_lat (time, id) float64 nan 0.0002661 5.01e-05 5.018e-05 5.024e-05 ...
var_lon (time, id) float64 nan 0.0006854 8.851e-05 9.018e-05 8.968e-05 ...
var_tmp (time, id) float64 nan 1e+03 1e+03 0.003733 0.0667 nan 0.001683 ...
In [70]:
# resample on the xarray.dataset onto two-day frequency
floatsDSAll_2D =floatsDSAll.resample('2D', dim='time')
floatsDSAll_2D
Out[70]:
<xarray.Dataset>
Dimensions: (id: 259, time: 2556)
Coordinates:
* id (id) int64 7574 10206 10208 11089 15703 15707 27069 27139 28842 ...
* time (time) datetime64[ns] 2002-07-04 2002-07-06 2002-07-08 ...
Data variables:
lon (time, id) float64 nan 66.33 69.55 64.68 69.58 nan 68.74 nan ...
ve (time, id) float64 nan 13.06 8.505 12.17 8.686 nan 26.96 nan ...
vn (time, id) float64 nan -8.651 -20.75 -7.287 -20.2 nan 7.892 nan ...
temp (time, id) float64 nan nan nan 27.95 28.55 nan 29.01 nan 27.7 ...
spd (time, id) float64 nan 15.92 22.6 14.58 22.25 nan 28.45 nan ...
var_tmp (time, id) float64 nan 1e+03 1e+03 0.003688 0.07467 nan ...
var_lon (time, id) float64 nan 0.002281 9.329e-05 0.0001497 9.757e-05 ...
lat (time, id) float64 nan 16.23 13.89 16.35 13.9 nan 20.17 nan ...
var_lat (time, id) float64 nan 0.0007236 5.197e-05 7.609e-05 5.339e-05 ...
In [71]:
# transfer it back to pandas.dataframe for plotting
floatsDFAll_2D = floatsDSAll_2D.to_dataframe()
floatsDFAll_2D
floatsDFAll_2D = floatsDFAll_2D.reset_index()
floatsDFAll_2D
# visualize the 2D-floats around arabian region
fig, ax = plt.subplots(figsize=(12,10))
floatsDFAll_2D.plot(kind='scatter', x='lon', y='lat', c='temp', cmap='RdBu_r', edgecolor='none', ax=ax)
Out[71]:
<matplotlib.axes._subplots.AxesSubplot at 0x1b03db2b0>
In [72]:
# get the value for the chllorophy for each data entry
floatsDFAll_2Dtimeorder = floatsDFAll_2D.sort_values(['time','id'],ascending=True)
floatsDFAll_2Dtimeorder # check whether it is time ordered!!
# should we drop nan to speed up??
Out[72]:
id
time
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
0
7574
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2556
10206
2002-07-04
66.330375
13.064500
-8.650875
NaN
15.915625
1000.000000
0.002281
16.229625
0.000724
5112
10208
2002-07-04
69.552375
8.505125
-20.755000
NaN
22.603500
1000.000000
0.000093
13.891875
0.000052
7668
11089
2002-07-04
64.683750
12.168000
-7.286875
27.954125
14.582375
0.003688
0.000150
16.354375
0.000076
10224
15703
2002-07-04
69.583125
8.685875
-20.195125
28.552250
22.251500
0.074665
0.000098
13.903250
0.000053
12780
15707
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
15336
27069
2002-07-04
68.737500
26.958750
7.891750
29.012000
28.453250
0.001705
0.000108
20.169750
0.000058
17892
27139
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
20448
28842
2002-07-04
60.694625
10.499125
-0.333875
27.701750
23.813750
0.003176
0.000254
18.878875
0.000118
23004
34159
2002-07-04
58.914250
27.354250
4.591750
NaN
28.099500
1000.000000
0.000119
12.548125
0.000063
25560
34173
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
28116
34210
2002-07-04
56.925000
-9.666750
-13.510125
26.694875
17.964875
0.003670
0.000168
6.476750
0.000081
30672
34211
2002-07-04
67.929125
20.618125
-12.301625
28.278000
24.182875
0.003506
0.000084
8.602375
0.000047
33228
34212
2002-07-04
64.750250
14.641875
13.108750
28.470750
20.799125
0.003616
0.000090
6.232000
0.000050
35784
34223
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
38340
34310
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
40896
34311
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
43452
34312
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
46008
34314
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
48564
34315
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
51120
34374
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
53676
34708
2002-07-04
59.691500
47.792000
2.521375
27.185500
47.992125
0.001837
0.000096
10.167500
0.000052
56232
34709
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58788
34710
2002-07-04
49.905250
-34.754625
24.402875
30.910625
48.126875
0.001782
0.000067
12.933625
0.000038
61344
34714
2002-07-04
63.649625
38.417625
12.527125
27.686625
40.572875
0.001824
0.000109
13.594750
0.000058
63900
34716
2002-07-04
65.384500
38.942875
-0.596250
28.801750
39.294625
0.001819
0.000094
7.491000
0.000052
66456
34718
2002-07-04
72.396375
21.462750
-24.061500
29.153625
32.457375
0.001687
0.000085
16.328750
0.000048
69012
34719
2002-07-04
70.946250
19.908500
-7.665125
28.922500
22.295250
0.001596
0.000094
17.764375
0.000052
71568
34720
2002-07-04
69.187000
10.269000
-36.005250
28.644250
37.705250
0.001838
0.000113
14.825375
0.000061
74124
34721
2002-07-04
65.375250
8.379375
-9.067750
27.943750
13.409375
0.001730
0.000120
17.190250
0.000063
...
...
...
...
...
...
...
...
...
...
...
...
587879
3098682
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
590435
60073460
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
592991
60074440
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
595547
60077450
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
598103
60150420
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
600659
60454500
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
603215
60656200
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
605771
60657200
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
608327
60658190
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
610883
60659110
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
613439
60659120
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
615995
60659190
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
618551
60659200
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
621107
60940960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
623663
60940970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
626219
60941960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
628775
60941970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
631331
60942960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
633887
60942970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
636443
60943960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
638999
60943970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
641555
60944960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
644111
60944970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
646667
60945970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
649223
60946960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
651779
60947960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
654335
60947970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
656891
60948960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
659447
60950430
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
662003
62321420
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
662004 rows × 11 columns
In [73]:
floatsDFAll_2Dtimeorder.lon.dropna().shape # the longitude data has lots of values (14340,)
Out[73]:
(14340,)
In [74]:
# this one line avoid the list above
# it took a really long time for 2D interpolation, it takes an hour
tmpAll = ds_2day.chlor_a.sel_points(time=list(floatsDFAll_2Dtimeorder.time),lon=list(floatsDFAll_2Dtimeorder.lon), lat=list(floatsDFAll_2Dtimeorder.lat), method='nearest')
print('the count of nan vaues in tmpAll is',tmpAll.to_series().isnull().sum())
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/pandas/indexes/base.py:2352: RuntimeWarning: invalid value encountered in less
indexer = np.where(op(left_distances, right_distances) |
/Users/vyan2000/local/miniconda3/envs/condapython3/lib/python3.5/site-packages/pandas/indexes/base.py:2352: RuntimeWarning: invalid value encountered in less_equal
indexer = np.where(op(left_distances, right_distances) |
the count of nan vaues in tmpAll is 659258
In [75]:
#print(tmpAll.dropna().shape)
tmpAll.to_series().dropna().shape # (2746,) good values
Out[75]:
(2746,)
In [76]:
print()
In [77]:
# tmp.to_series() to transfer it from xarray dataset to series
floatsDFAll_2Dtimeorder['chlor_a'] = pd.Series(np.array(tmpAll.to_series()), index=floatsDFAll_2Dtimeorder.index)
print("after editing the dataframe the nan values in 'chlor_a' is",floatsDFAll_2Dtimeorder.chlor_a.isnull().sum() ) # they should be the same values as above
# take a look at the data
floatsDFAll_2Dtimeorder
# visualize the float around the arabian sea region
fig, ax = plt.subplots(figsize=(12,10))
floatsDFAll_2Dtimeorder.plot(kind='scatter', x='lon', y='lat', c='chlor_a', cmap='RdBu_r', edgecolor='none', ax=ax)
after editing the dataframe the nan values in 'chlor_a' is 659258
Out[77]:
<matplotlib.axes._subplots.AxesSubplot at 0x1b03d62e8>
In [78]:
def scale(x):
logged = np.log10(x)
return logged
In [79]:
#print(floatsAll_timeorder['chlor_a'].apply(scale))
floatsDFAll_2Dtimeorder['chlor_a_log10'] = floatsDFAll_2Dtimeorder['chlor_a'].apply(scale)
floatsDFAll_2Dtimeorder
#print("after the transformation the nan values in 'chlor_a_log10' is", floatsAll_timeorder.chlor_a_log10.isnull().sum() )
# visualize the float around the arabian sea region
fig, ax = plt.subplots(figsize=(12,10))
floatsDFAll_2Dtimeorder.plot(kind='scatter', x='lon', y='lat', c='chlor_a_log10', cmap='RdBu_r', edgecolor='none', ax=ax)
floatsDFAll_2Dtimeorder.chlor_a.dropna().shape # (2746,)
# floatsDFAll_2Dtimeorder.chlor_a_log10.dropna().shape # (2746,)
Out[79]:
(2746,)
In [80]:
# take the diff of the chlor_a, and this has to be done in xarray
# transfer the dataframe into xarry dataset again
# take the difference
floatsDFAll_2Dtimeorder
Out[80]:
id
time
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
chlor_a
chlor_a_log10
0
7574
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
2556
10206
2002-07-04
66.330375
13.064500
-8.650875
NaN
15.915625
1000.000000
0.002281
16.229625
0.000724
NaN
NaN
5112
10208
2002-07-04
69.552375
8.505125
-20.755000
NaN
22.603500
1000.000000
0.000093
13.891875
0.000052
NaN
NaN
7668
11089
2002-07-04
64.683750
12.168000
-7.286875
27.954125
14.582375
0.003688
0.000150
16.354375
0.000076
NaN
NaN
10224
15703
2002-07-04
69.583125
8.685875
-20.195125
28.552250
22.251500
0.074665
0.000098
13.903250
0.000053
NaN
NaN
12780
15707
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
15336
27069
2002-07-04
68.737500
26.958750
7.891750
29.012000
28.453250
0.001705
0.000108
20.169750
0.000058
NaN
NaN
17892
27139
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
20448
28842
2002-07-04
60.694625
10.499125
-0.333875
27.701750
23.813750
0.003176
0.000254
18.878875
0.000118
NaN
NaN
23004
34159
2002-07-04
58.914250
27.354250
4.591750
NaN
28.099500
1000.000000
0.000119
12.548125
0.000063
NaN
NaN
25560
34173
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
28116
34210
2002-07-04
56.925000
-9.666750
-13.510125
26.694875
17.964875
0.003670
0.000168
6.476750
0.000081
0.207322
-0.683355
30672
34211
2002-07-04
67.929125
20.618125
-12.301625
28.278000
24.182875
0.003506
0.000084
8.602375
0.000047
NaN
NaN
33228
34212
2002-07-04
64.750250
14.641875
13.108750
28.470750
20.799125
0.003616
0.000090
6.232000
0.000050
NaN
NaN
35784
34223
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
38340
34310
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
40896
34311
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
43452
34312
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
46008
34314
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
48564
34315
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
51120
34374
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
53676
34708
2002-07-04
59.691500
47.792000
2.521375
27.185500
47.992125
0.001837
0.000096
10.167500
0.000052
NaN
NaN
56232
34709
2002-07-04
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
58788
34710
2002-07-04
49.905250
-34.754625
24.402875
30.910625
48.126875
0.001782
0.000067
12.933625
0.000038
NaN
NaN
61344
34714
2002-07-04
63.649625
38.417625
12.527125
27.686625
40.572875
0.001824
0.000109
13.594750
0.000058
NaN
NaN
63900
34716
2002-07-04
65.384500
38.942875
-0.596250
28.801750
39.294625
0.001819
0.000094
7.491000
0.000052
NaN
NaN
66456
34718
2002-07-04
72.396375
21.462750
-24.061500
29.153625
32.457375
0.001687
0.000085
16.328750
0.000048
NaN
NaN
69012
34719
2002-07-04
70.946250
19.908500
-7.665125
28.922500
22.295250
0.001596
0.000094
17.764375
0.000052
NaN
NaN
71568
34720
2002-07-04
69.187000
10.269000
-36.005250
28.644250
37.705250
0.001838
0.000113
14.825375
0.000061
NaN
NaN
74124
34721
2002-07-04
65.375250
8.379375
-9.067750
27.943750
13.409375
0.001730
0.000120
17.190250
0.000063
NaN
NaN
...
...
...
...
...
...
...
...
...
...
...
...
...
...
587879
3098682
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
590435
60073460
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
592991
60074440
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
595547
60077450
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
598103
60150420
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
600659
60454500
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
603215
60656200
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
605771
60657200
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
608327
60658190
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
610883
60659110
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
613439
60659120
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
615995
60659190
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
618551
60659200
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
621107
60940960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
623663
60940970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
626219
60941960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
628775
60941970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
631331
60942960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
633887
60942970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
636443
60943960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
638999
60943970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
641555
60944960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
644111
60944970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
646667
60945970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
649223
60946960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
651779
60947960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
654335
60947970
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
656891
60948960
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
659447
60950430
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
662003
62321420
2016-06-30
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
NaN
662004 rows × 13 columns
In [81]:
# unstack() will provide a 2d dataframe
# reset_index() will reset all the index as columns
In [82]:
# prepare the data in dataset and about to take the diff
tmp = xr.Dataset.from_dataframe(floatsDFAll_2Dtimeorder.set_index(['time','id']) ) # set time & id as the index); use reset_index to revert this operation
# take the diff on the chlor_a
chlor_a_rate = tmp.diff(dim='time',n=1).chlor_a.to_series().reset_index()
# make the column to a proper name
chlor_a_rate.rename(columns={'chlor_a':'chl_rate'}, inplace='True')
chlor_a_rate
# merge the two dataframes {floatsDFAll_2Dtimeorder; chlor_a_rate} into one dataframe based on the index {id, time} and use the left method
floatsDFAllRate_2Dtimeorder=pd.merge(floatsDFAll_2Dtimeorder,chlor_a_rate, on=['time','id'], how = 'left')
floatsDFAllRate_2Dtimeorder
# check
print('check the sum of the chlor_a before the merge', chlor_a_rate.chl_rate.sum())
print('check the sum of the chlor_a after the merge',floatsDFAllRate_2Dtimeorder.chl_rate.sum())
# visualize the chlorophyll rate, it is *better* to visualize at this scale
fig, ax = plt.subplots(figsize=(12,10))
floatsDFAllRate_2Dtimeorder.plot(kind='scatter', x='lon', y='lat', c='chl_rate', cmap='RdBu_r', vmin=-0.8, vmax=0.8, edgecolor='none', ax=ax)
# visualize the chlorophyll rate on the log scale
floatsDFAllRate_2Dtimeorder['chl_rate_log10'] = floatsDFAllRate_2Dtimeorder['chl_rate'].apply(scale)
floatsDFAllRate_2Dtimeorder
fig, ax = plt.subplots(figsize=(12,10))
floatsDFAllRate_2Dtimeorder.plot(kind='scatter', x='lon', y='lat', c='chl_rate_log10', cmap='RdBu_r', edgecolor='none', ax=ax)
#floatsDFAllRate_2Dtimeorder.chl_rate.dropna().shape # (1104,) data points.....
floatsDFAllRate_2Dtimeorder.chl_rate_log10.dropna().shape # (488,) data points..... notice, chl_rate can be negative, so do not take log10
check the sum of the chlor_a before the merge -58.721368204802275
check the sum of the chlor_a after the merge -58.721368204802275
Out[82]:
(488,)
In [83]:
#from datetime import datetime
#datetime(floatsDFAllRate_2Dtimeorder.time)
pd.to_datetime(floatsDFAllRate_2Dtimeorder.time)
type(pd.to_datetime(floatsDFAllRate_2Dtimeorder.time))
ts = pd.Series(0, index=pd.to_datetime(floatsDFAllRate_2Dtimeorder.time) ) # creat a target time series for masking purpose
# take the month out
month = ts.index.month
# month.shape # a check on the shape of the month.
selector = ((11==month) | (12==month) | (1==month) | (2==month) | (3==month) )
selector
print('shape of the selector', selector.shape)
print('all the data count in [11-01, 03-31] is', floatsDFAllRate_2Dtimeorder[selector].chl_rate.dropna().shape) # total (805,)
print('all the data count is', floatsDFAllRate_2Dtimeorder.chl_rate.dropna().shape ) # total (1104,)
shape of the selector (662004,)
all the data count in [11-01, 03-31] is (805,)
all the data count is (1104,)
In [84]:
# histogram for non standarized data
floatsDFAllRate_2Dtimeorder[selector].chl_rate.dropna().hist(bins=100,range=[-0.3,0.3])
Out[84]:
<matplotlib.axes._subplots.AxesSubplot at 0x1c90414e0>
In [85]:
# standarized series
ts = floatsDFAllRate_2Dtimeorder[selector].chl_rate.dropna()
ts_standardized = (ts - ts.mean())/ts.std()
ts_standardized.hist(bins=100,range=[-0.3,0.3])
Out[85]:
<matplotlib.axes._subplots.AxesSubplot at 0x194a5d6a0>
In [86]:
# all the data
fig, axes = plt.subplots(nrows=8, ncols=2, figsize=(12, 10))
fig.subplots_adjust(hspace=0.05, wspace=0.05)
for i, ax in zip(range(2002,2017), axes.flat) :
tmpyear = floatsDFAllRate_2Dtimeorder[ (floatsDFAllRate_2Dtimeorder.time > str(i)) & (floatsDFAllRate_2Dtimeorder.time < str(i+1)) ] # if year i
#fig, ax = plt.subplots(figsize=(12,10))
print(tmpyear.chl_rate.dropna().shape) # total is 1056
tmpyear.plot(kind='scatter', x='lon', y='lat', c='chl_rate', cmap='RdBu_r',vmin=-0.6, vmax=0.6, edgecolor='none', ax=ax)
ax.set_title('year %g' % i)
# remove the extra figure
ax = plt.subplot(8,2,16)
fig.delaxes(ax)
(52,)
(60,)
(4,)
(49,)
(97,)
(79,)
(145,)
(46,)
(58,)
(13,)
(37,)
(58,)
(233,)
(125,)
(44,)
In [87]:
fig, axes = plt.subplots(nrows=7, ncols=2, figsize=(12, 10))
fig.subplots_adjust(hspace=0.05, wspace=0.05)
for i, ax in zip(range(2002,2016), axes.flat) :
tmpyear = floatsDFAllRate_2Dtimeorder[ (floatsDFAllRate_2Dtimeorder.time >= (str(i)+ '-11-01') ) & (floatsDFAllRate_2Dtimeorder.time <= (str(i+1)+'-03-31') ) ] # if year i
# select only particular month, Nov 1 to March 31
#fig, ax = plt.subplots(figsize=(12,10))
print(tmpyear.chl_rate.dropna().shape) # the total is 805
tmpyear.plot(kind='scatter', x='lon', y='lat', c='chl_rate', cmap='RdBu_r', vmin=-0.6, vmax=0.6, edgecolor='none', ax=ax)
ax.set_title('year %g' % i)
# remove the extra figure
# ax = plt.subplot(8,2,16)
# fig.delaxes(ax)
(82,)
(1,)
(9,)
(76,)
(35,)
(132,)
(32,)
(46,)
(3,)
(37,)
(0,)
(176,)
(126,)
(50,)
In [ ]:
In [ ]:
In [88]:
# let's output the data as a csv or hdf file to disk to save the experiment time
df_list = []
for i in range(2002,2017) :
tmpyear = floatsDFAllRate_2Dtimeorder[ (floatsDFAllRate_2Dtimeorder.time >= (str(i)+ '-11-01') ) & (floatsDFAllRate_2Dtimeorder.time <= (str(i+1)+'-03-31') ) ] # if year i
# select only particular month, Nov 1 to March 31
df_list.append(tmpyear)
df_tmp = pd.concat(df_list)
print('all the data count in [11-01, 03-31] is ', df_tmp.chl_rate.dropna().shape) # again, the total is (805,)
df_chl_out_2D_modisa = df_tmp[~df_tmp.chl_rate.isnull()] # only keep the non-nan values
#list(df_chl_out_2D.groupby(['id'])) # can see the continuity pattern of the Lagarangian difference for each float id
# output to a csv or hdf file
df_chl_out_2D_modisa.head()
all the data count in [11-01, 03-31] is (805,)
Out[88]:
id
time
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
chlor_a
chlor_a_log10
chl_rate
chl_rate_log10
15828
34721
2002-11-03
67.570000
3.303000
2.865500
29.435500
8.211375
0.001823
0.000135
12.647250
0.000069
0.123307
-0.909012
-0.010569
NaN
16081
34710
2002-11-05
63.160750
0.491500
10.219250
28.991250
10.749875
0.001596
0.000088
17.127000
0.000050
0.445077
-0.351565
0.033500
-1.474955
16320
11089
2002-11-07
64.835375
-15.401500
2.263500
28.939625
16.392000
0.003391
0.000105
14.366875
0.000056
0.182671
-0.738330
0.024246
-1.615360
16322
15707
2002-11-07
67.399125
-19.144750
-21.695125
NaN
29.499000
1000.000000
0.000118
13.739500
0.000063
0.161665
-0.791384
-0.004139
NaN
16336
34315
2002-11-07
57.375375
-49.749875
4.788500
29.647125
52.729375
0.004589
0.000085
5.613000
0.000048
0.115356
-0.937960
-0.009359
NaN
In [89]:
df_chl_out_2D_modisa.index.name = 'index' # make it specific for the index name
df_chl_out_2D_modisa.head()
Out[89]:
id
time
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
chlor_a
chlor_a_log10
chl_rate
chl_rate_log10
index
15828
34721
2002-11-03
67.570000
3.303000
2.865500
29.435500
8.211375
0.001823
0.000135
12.647250
0.000069
0.123307
-0.909012
-0.010569
NaN
16081
34710
2002-11-05
63.160750
0.491500
10.219250
28.991250
10.749875
0.001596
0.000088
17.127000
0.000050
0.445077
-0.351565
0.033500
-1.474955
16320
11089
2002-11-07
64.835375
-15.401500
2.263500
28.939625
16.392000
0.003391
0.000105
14.366875
0.000056
0.182671
-0.738330
0.024246
-1.615360
16322
15707
2002-11-07
67.399125
-19.144750
-21.695125
NaN
29.499000
1000.000000
0.000118
13.739500
0.000063
0.161665
-0.791384
-0.004139
NaN
16336
34315
2002-11-07
57.375375
-49.749875
4.788500
29.647125
52.729375
0.004589
0.000085
5.613000
0.000048
0.115356
-0.937960
-0.009359
NaN
In [90]:
# CSV CSV CSV CSV with specfic index
df_chl_out_2D_modisa.to_csv('df_chl_out_2D_modisa.csv', sep=',', index_label = 'index')
# load CSV output
test = pd.read_csv('df_chl_out_2D_modisa.csv', index_col='index')
# a check
test.head()
Out[90]:
id
time
lon
ve
vn
temp
spd
var_tmp
var_lon
lat
var_lat
chlor_a
chlor_a_log10
chl_rate
chl_rate_log10
index
15828
34721
2002-11-03
67.570000
3.303000
2.865500
29.435500
8.211375
0.001823
0.000135
12.647250
0.000069
0.123307
-0.909012
-0.010569
NaN
16081
34710
2002-11-05
63.160750
0.491500
10.219250
28.991250
10.749875
0.001596
0.000088
17.127000
0.000050
0.445077
-0.351565
0.033500
-1.474955
16320
11089
2002-11-07
64.835375
-15.401500
2.263500
28.939625
16.392000
0.003391
0.000105
14.366875
0.000056
0.182671
-0.738330
0.024246
-1.615360
16322
15707
2002-11-07
67.399125
-19.144750
-21.695125
NaN
29.499000
1000.000000
0.000118
13.739500
0.000063
0.161665
-0.791384
-0.004139
NaN
16336
34315
2002-11-07
57.375375
-49.749875
4.788500
29.647125
52.729375
0.004589
0.000085
5.613000
0.000048
0.115356
-0.937960
-0.009359
NaN
In [91]:
# HDF HDF HDF HDF
# deprecated!
'''
df_chl_out_2D.to_hdf('df_chl_out_2D.h5','df_chl_out_2D')
# load HDF5 output
test = pd.read_hdf('df_chl_out_2D.h5')
# a check
test.head()
'''
Out[91]:
"\ndf_chl_out_2D.to_hdf('df_chl_out_2D.h5','df_chl_out_2D')\n\n# load HDF5 output\ntest = pd.read_hdf('df_chl_out_2D.h5')\n\n# a check\ntest.head()\n"
In [ ]:
# the question is: is the chlorophyll_ocx negatively correlated with the temperature?
# how many nans in the chlor_a, what's the percentage of nans
# first, do a resampling on the floater data onto the two days frequency
# second, dump the dataframe into a dataset
# third, do the diff to get the rate of change in xarray
# fourth, plot the rate of changes for different years!!
# add the oxygen, add the salinity, add strain, add stress, add vorticity
Content source: vyan2000/ocml-public
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