In [2]:
import numpy as np
import os
from os.path import join as opj
In [3]:
# fc_file_list = None
By mistake I over wrote the functionalConnectivity and corrupted the FC maps. but datasink is still intact
In [4]:
# Paths
path_cwd = os.getcwd()
path_split_list = path_cwd.split('/')
s = path_split_list[0:-1]
s = opj('/',*s) # *s converts list to path, # also it is very important to add '/' in the begining so it is read as directory later
base_directory = opj(s,'result')
# data_path = "data/ABIDE2_NYU1-BIDS-Preprocessed-GSR/NYU1/"
data_path = "data/ABIDE-BIDS-Preprocessed-GSR/NYU/"
wf_name = 'globalSignalRemoval_ABIDE1_UCLA1_GSR_FC'
datasink_name = 'datasink_ABIDE1_UCLA1_GSR_FC'
# % run functional_connectivity.ipynb
In [9]:
%%time
# Paths
# fc_file_path = opj(base_directory,'functionalConnectivity_GSR0_fisher0','save_fc_file_list/fc_file_list.npy')
fc_file_path = opj(base_directory,wf_name,'save_fc_file_list/fc_file_list.npy')
# fc_file_path = opj(base_directory,wf_name,'save_fc_file_list/fc_file_comp_list.npy')
# save_destination = opj(base_directory,wf_name)
# if not os.path.exists(save_destination):
# os.mkdir(save_destination)
apply_fisher = True
fc_file_list = (np.load(fc_file_path))
# ABIDE1 - NYU
autism_start_index = 0
autism_end_index = 78
td_start_index = 79
td_end_index = 157 #183
# ABIDE2 - NYU1
# autism_start_index = 0
# autism_end_index = 29 # 47
# td_start_index = 48
# td_end_index = 77
# ABIDE1 UCLA_1
autism_start_index = 0
autism_end_index = 48
td_start_index = 49
td_end_index = 81
# GU1-NYU1
# participant_file = 'GU1_NYU1participants.tsv'
# pid_dx = np.loadtxt(participant_file,skiprows=1)
# autism_subject_indexes = np.array(np.where(pid_dx[:,1]==1)).squeeze()[0:84]
# td_subject_indexes = np.array(np.where(pid_dx[:,1]==2)).squeeze()[0:84]
autism_subject_indexes = np.arange(autism_start_index, autism_end_index+1 )[0:33]
td_subject_indexes = np.arange(td_start_index, td_end_index + 1 )
%run hypothesis_test-fast.ipynb
[ '/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051201/pearcoff/0051201_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051202/pearcoff/0051202_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051203/pearcoff/0051203_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051204/pearcoff/0051204_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051205/pearcoff/0051205_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051206/pearcoff/0051206_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051207/pearcoff/0051207_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051208/pearcoff/0051208_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051209/pearcoff/0051209_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051210/pearcoff/0051210_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051211/pearcoff/0051211_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051212/pearcoff/0051212_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051213/pearcoff/0051213_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051214/pearcoff/0051214_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051215/pearcoff/0051215_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051216/pearcoff/0051216_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051217/pearcoff/0051217_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051218/pearcoff/0051218_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051219/pearcoff/0051219_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051220/pearcoff/0051220_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051221/pearcoff/0051221_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051222/pearcoff/0051222_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051223/pearcoff/0051223_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051224/pearcoff/0051224_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051225/pearcoff/0051225_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051226/pearcoff/0051226_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051227/pearcoff/0051227_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051228/pearcoff/0051228_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051229/pearcoff/0051229_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051230/pearcoff/0051230_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051231/pearcoff/0051231_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051232/pearcoff/0051232_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051233/pearcoff/0051233_fc_map.npy']
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[ '/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051250/pearcoff/0051250_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051251/pearcoff/0051251_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051252/pearcoff/0051252_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051253/pearcoff/0051253_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051254/pearcoff/0051254_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051255/pearcoff/0051255_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051256/pearcoff/0051256_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051257/pearcoff/0051257_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051258/pearcoff/0051258_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051259/pearcoff/0051259_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051260/pearcoff/0051260_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051261/pearcoff/0051261_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051262/pearcoff/0051262_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051263/pearcoff/0051263_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051264/pearcoff/0051264_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051265/pearcoff/0051265_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051266/pearcoff/0051266_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051267/pearcoff/0051267_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051268/pearcoff/0051268_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051269/pearcoff/0051269_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051270/pearcoff/0051270_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051271/pearcoff/0051271_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051272/pearcoff/0051272_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051273/pearcoff/0051273_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051274/pearcoff/0051274_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051275/pearcoff/0051275_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051276/pearcoff/0051276_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051277/pearcoff/0051277_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051278/pearcoff/0051278_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051279/pearcoff/0051279_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051280/pearcoff/0051280_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051281/pearcoff/0051281_fc_map.npy'
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/_subject_id_0051282/pearcoff/0051282_fc_map.npy']
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CPU times: user 2min 36s, sys: 2min 49s, total: 5min 26s
Wall time: 7min 26s
CPU times: user 2min 37s, sys: 2min 49s, total: 5min 27s
Wall time: 7min 27s
In [15]:
len(autism_subject_indexes),len(td_subject_indexes)
Out[15]:
(79, 79)
In [59]:
autism_subject_indexes,td_subject_indexes
Out[59]:
(array([ 11, 13, 15, 17, 20, 23, 24, 27, 30, 36, 37, 38, 39,
41, 43, 46, 47, 48, 49, 50, 54, 55, 58, 59, 61, 64,
66, 67, 68, 69, 70, 74, 75, 76, 77, 78, 79, 80, 81,
82, 83, 84, 90, 91, 92, 93, 96, 97, 98, 101, 102, 106,
107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119,
120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132,
133, 134, 135, 136, 137, 138]),
array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14,
16, 18, 19, 21, 22, 25, 26, 28, 29, 31, 32, 33, 34,
35, 40, 42, 44, 45, 51, 52, 53, 56, 57, 60, 62, 63,
65, 71, 72, 73, 85, 86, 87, 88, 89, 94, 95, 99, 100,
103, 104, 105, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163,
164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176,
177, 178, 179, 180, 181, 182]))
In [60]:
dx
Out[60]:
array([[ 2.87410000e+04, 2.00000000e+00],
[ 2.87420000e+04, 2.00000000e+00],
[ 2.87430000e+04, 2.00000000e+00],
[ 2.87440000e+04, 2.00000000e+00],
[ 2.87450000e+04, 2.00000000e+00],
[ 2.87460000e+04, 2.00000000e+00],
[ 2.87470000e+04, 2.00000000e+00],
[ 2.87480000e+04, 2.00000000e+00],
[ 2.87490000e+04, 2.00000000e+00],
[ 2.87500000e+04, 2.00000000e+00],
[ 2.87510000e+04, 2.00000000e+00],
[ 2.87520000e+04, 1.00000000e+00],
[ 2.87530000e+04, 2.00000000e+00],
[ 2.87540000e+04, 1.00000000e+00],
[ 2.87550000e+04, 2.00000000e+00],
[ 2.87560000e+04, 1.00000000e+00],
[ 2.87570000e+04, 2.00000000e+00],
[ 2.87580000e+04, 1.00000000e+00],
[ 2.87590000e+04, 2.00000000e+00],
[ 2.87600000e+04, 2.00000000e+00],
[ 2.87610000e+04, 1.00000000e+00],
[ 2.87620000e+04, 2.00000000e+00],
[ 2.87630000e+04, 2.00000000e+00],
[ 2.87640000e+04, 1.00000000e+00],
[ 2.87650000e+04, 1.00000000e+00],
[ 2.87660000e+04, 2.00000000e+00],
[ 2.87670000e+04, 2.00000000e+00],
[ 2.87680000e+04, 1.00000000e+00],
[ 2.87690000e+04, 2.00000000e+00],
[ 2.87700000e+04, 2.00000000e+00],
[ 2.87710000e+04, 1.00000000e+00],
[ 2.87720000e+04, 2.00000000e+00],
[ 2.87730000e+04, 2.00000000e+00],
[ 2.87740000e+04, 2.00000000e+00],
[ 2.87750000e+04, 2.00000000e+00],
[ 2.87760000e+04, 2.00000000e+00],
[ 2.87770000e+04, 1.00000000e+00],
[ 2.87780000e+04, 1.00000000e+00],
[ 2.87790000e+04, 1.00000000e+00],
[ 2.87800000e+04, 1.00000000e+00],
[ 2.87810000e+04, 2.00000000e+00],
[ 2.87820000e+04, 1.00000000e+00],
[ 2.87830000e+04, 2.00000000e+00],
[ 2.87840000e+04, 1.00000000e+00],
[ 2.87850000e+04, 2.00000000e+00],
[ 2.87860000e+04, 2.00000000e+00],
[ 2.87870000e+04, 1.00000000e+00],
[ 2.87880000e+04, 1.00000000e+00],
[ 2.87890000e+04, 1.00000000e+00],
[ 2.87900000e+04, 1.00000000e+00],
[ 2.87910000e+04, 1.00000000e+00],
[ 2.87920000e+04, 2.00000000e+00],
[ 2.87930000e+04, 2.00000000e+00],
[ 2.87940000e+04, 2.00000000e+00],
[ 2.87950000e+04, 1.00000000e+00],
[ 2.87960000e+04, 1.00000000e+00],
[ 2.87970000e+04, 2.00000000e+00],
[ 2.87980000e+04, 2.00000000e+00],
[ 2.87990000e+04, 1.00000000e+00],
[ 2.88000000e+04, 1.00000000e+00],
[ 2.88010000e+04, 2.00000000e+00],
[ 2.88020000e+04, 1.00000000e+00],
[ 2.88030000e+04, 2.00000000e+00],
[ 2.88040000e+04, 2.00000000e+00],
[ 2.88050000e+04, 1.00000000e+00],
[ 2.88060000e+04, 2.00000000e+00],
[ 2.88070000e+04, 1.00000000e+00],
[ 2.88080000e+04, 1.00000000e+00],
[ 2.88090000e+04, 1.00000000e+00],
[ 2.88100000e+04, 1.00000000e+00],
[ 2.88110000e+04, 1.00000000e+00],
[ 2.88120000e+04, 2.00000000e+00],
[ 2.88130000e+04, 2.00000000e+00],
[ 2.88140000e+04, 2.00000000e+00],
[ 2.88150000e+04, 1.00000000e+00],
[ 2.88160000e+04, 1.00000000e+00],
[ 2.88170000e+04, 1.00000000e+00],
[ 2.88180000e+04, 1.00000000e+00],
[ 2.88190000e+04, 1.00000000e+00],
[ 2.88200000e+04, 1.00000000e+00],
[ 2.88210000e+04, 1.00000000e+00],
[ 2.88220000e+04, 1.00000000e+00],
[ 2.88230000e+04, 1.00000000e+00],
[ 2.88240000e+04, 1.00000000e+00],
[ 2.88250000e+04, 1.00000000e+00],
[ 2.88260000e+04, 2.00000000e+00],
[ 2.88270000e+04, 2.00000000e+00],
[ 2.88280000e+04, 2.00000000e+00],
[ 2.88290000e+04, 2.00000000e+00],
[ 2.88300000e+04, 2.00000000e+00],
[ 2.88310000e+04, 1.00000000e+00],
[ 2.88320000e+04, 1.00000000e+00],
[ 2.88340000e+04, 1.00000000e+00],
[ 2.88350000e+04, 1.00000000e+00],
[ 2.88360000e+04, 2.00000000e+00],
[ 2.88370000e+04, 2.00000000e+00],
[ 2.88380000e+04, 1.00000000e+00],
[ 2.88390000e+04, 1.00000000e+00],
[ 2.88400000e+04, 1.00000000e+00],
[ 2.88410000e+04, 2.00000000e+00],
[ 2.88420000e+04, 2.00000000e+00],
[ 2.88430000e+04, 1.00000000e+00],
[ 2.88440000e+04, 1.00000000e+00],
[ 2.88450000e+04, 2.00000000e+00],
[ 2.88460000e+04, 2.00000000e+00],
[ 2.88470000e+04, 2.00000000e+00],
[ 2.91770000e+04, 1.00000000e+00],
[ 2.91780000e+04, 1.00000000e+00],
[ 2.91790000e+04, 1.00000000e+00],
[ 2.91800000e+04, 1.00000000e+00],
[ 2.91810000e+04, 1.00000000e+00],
[ 2.91820000e+04, 1.00000000e+00],
[ 2.91830000e+04, 1.00000000e+00],
[ 2.91840000e+04, 1.00000000e+00],
[ 2.91850000e+04, 1.00000000e+00],
[ 2.91860000e+04, 1.00000000e+00],
[ 2.91870000e+04, 1.00000000e+00],
[ 2.91880000e+04, 1.00000000e+00],
[ 2.91890000e+04, 1.00000000e+00],
[ 2.91900000e+04, 1.00000000e+00],
[ 2.91910000e+04, 1.00000000e+00],
[ 2.91920000e+04, 1.00000000e+00],
[ 2.91930000e+04, 1.00000000e+00],
[ 2.91940000e+04, 1.00000000e+00],
[ 2.91950000e+04, 1.00000000e+00],
[ 2.91960000e+04, 1.00000000e+00],
[ 2.91970000e+04, 1.00000000e+00],
[ 2.91980000e+04, 1.00000000e+00],
[ 2.91990000e+04, 1.00000000e+00],
[ 2.92000000e+04, 1.00000000e+00],
[ 2.92010000e+04, 1.00000000e+00],
[ 2.92020000e+04, 1.00000000e+00],
[ 2.92030000e+04, 1.00000000e+00],
[ 2.92040000e+04, 1.00000000e+00],
[ 2.92050000e+04, 1.00000000e+00],
[ 2.92060000e+04, 1.00000000e+00],
[ 2.92070000e+04, 1.00000000e+00],
[ 2.92080000e+04, 1.00000000e+00],
[ 2.92090000e+04, 1.00000000e+00],
[ 2.92100000e+04, 1.00000000e+00],
[ 2.92110000e+04, 1.00000000e+00],
[ 2.92120000e+04, 1.00000000e+00],
[ 2.92130000e+04, 1.00000000e+00],
[ 2.92140000e+04, 1.00000000e+00],
[ 2.92150000e+04, 1.00000000e+00],
[ 2.92160000e+04, 1.00000000e+00],
[ 2.92170000e+04, 1.00000000e+00],
[ 2.92180000e+04, 1.00000000e+00],
[ 2.92190000e+04, 1.00000000e+00],
[ 2.92200000e+04, 1.00000000e+00],
[ 2.92210000e+04, 1.00000000e+00],
[ 2.92220000e+04, 1.00000000e+00],
[ 2.92230000e+04, 1.00000000e+00],
[ 2.92240000e+04, 1.00000000e+00],
[ 2.92250000e+04, 2.00000000e+00],
[ 2.92260000e+04, 2.00000000e+00],
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In [10]:
fc_file_list
Out[10]:
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'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29233/pearcoff/29233_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29234/pearcoff/29234_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29235/pearcoff/29235_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29236/pearcoff/29236_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29237/pearcoff/29237_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29238/pearcoff/29238_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29239/pearcoff/29239_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29240/pearcoff/29240_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29241/pearcoff/29241_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29242/pearcoff/29242_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29243/pearcoff/29243_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29244/pearcoff/29244_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29245/pearcoff/29245_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29246/pearcoff/29246_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29247/pearcoff/29247_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29248/pearcoff/29248_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29249/pearcoff/29249_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29250/pearcoff/29250_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29251/pearcoff/29251_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29252/pearcoff/29252_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29253/pearcoff/29253_fc_map.npy',
'/home1/varunk/result/functionalConnectivity_GU1_NYU1_GSR/_subject_id_29254/pearcoff/29254_fc_map.npy'],
dtype='<U100')
In [10]:
%%time
# paths
Pval_file_path = opj(base_directory,wf_name,'hypothesis_testing/Pvals.npy')
%run fdr_correction.ipynb
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CPU times: user 540 ms, sys: 832 ms, total: 1.37 s
Wall time: 1min 43s
CPU times: user 32.2 s, sys: 28.9 s, total: 1min 1s
Wall time: 3min 25s
In [12]:
Pval_file_path
Out[12]:
'/home1/varunk/result/globalSignalRemoval_ABIDE1_UCLA1_GSR_FC/hypothesis_testing/Pvals.npy'
In [11]:
res =(np.unique(np.where(fdrcorrected_brain_4Dtensor_mask[:,:,:,:] == 1)[3], return_counts= True))
count_roi = zip(list(res[0]), list(res[1]))
set(count_roi)
Out[11]:
{(2, 1),
(6, 8),
(24, 6),
(25, 48),
(30, 1),
(53, 1),
(62, 2),
(64, 1),
(77, 5),
(95, 2),
(130, 1),
(142, 9),
(150, 2),
(152, 1),
(153, 2),
(174, 23),
(175, 2),
(189, 1),
(198, 1),
(204, 9),
(222, 2),
(226, 2)}
In [13]:
res =(np.unique(np.where(fdrcorrected_brain_4Dtensor_mask[:,:,:,:] == 1)[3], return_counts= True))
count_roi = zip(list(res[0]), list(res[1]))
set(count_roi)
Out[13]:
{(2, 1),
(6, 8),
(24, 6),
(25, 48),
(30, 1),
(53, 1),
(62, 2),
(64, 1),
(77, 5),
(95, 2),
(130, 1),
(142, 9),
(150, 2),
(152, 1),
(153, 2),
(174, 23),
(175, 2),
(189, 1),
(198, 1),
(204, 9),
(222, 2),
(226, 2)}
In [18]:
opj(base_directory,wf_name,'save_fc_file_list/fc_file_list.npy')
Out[18]:
'/home1/varunk/result/functionalConnectivity_GSR1_fisher0/save_fc_file_list/fc_file_list.npy'
In [14]:
autism_subject_indexes
Out[14]:
array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,
17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32])
In [15]:
%%time
# Paths
fc_file_path = opj(base_directory,wf_name,'save_fc_file_list/fc_file_list.npy')
fc_file_list = (np.load(fc_file_path))
Pvals_file_path = opj(base_directory,wf_name,'hypothesis_testing/Pvals.npy')
Qvals_file_path = opj(base_directory,wf_name,'fdr_correction/Qvals.npy')
# participant_file = 'GU1_NYU1participants.tsv'
# pid_dx = np.loadtxt(participant_file,skiprows=1)
# autism_subject_indexes = np.array(np.where(pid_dx[:,1]==1)).squeeze()[0:84]
# td_subject_indexes = np.array(np.where(pid_dx[:,1]==2)).squeeze()[0:84]
%run results.ipynb
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CPU times: user 9.42 s, sys: 1min 24s, total: 1min 33s
Wall time: 2min 54s
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Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 157
Job Done for ROI- 175
Stored ROI file the shared arrays!
Job Done for ROI- 184
Stored ROI file the shared arrays!
Job Done for ROI- 193
Stored ROI file the shared arrays!
Job Done for ROI- 202
Stored ROI file the shared arrays!
Job Done for ROI- 211
Stored ROI file the shared arrays!
Job Done for ROI- 149
Stored ROI file the shared arrays!
Job Done for ROI- 167
Stored ROI file the shared arrays!
Job Done for ROI- 158
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 185
Job Done for ROI- 176
Stored ROI file the shared arrays!
Job Done for ROI- 194
Stored ROI file the shared arrays!
Job Done for ROI- 203
Stored ROI file the shared arrays!
Job Done for ROI- 212
Stored ROI file the shared arrays!
Job Done for ROI- 150
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 168
Job Done for ROI- 159
Stored ROI file the shared arrays!
Job Done for ROI- 186
Stored ROI file the shared arrays!
Job Done for ROI- 177
Stored ROI file the shared arrays!
Job Done for ROI- 195
Stored ROI file the shared arrays!
Job Done for ROI- 204
Stored ROI file the shared arrays!
Job Done for ROI- 213
Stored ROI file the shared arrays!
Job Done for ROI- 151
Stored ROI file the shared arrays!
Job Done for ROI- 160
Stored ROI file the shared arrays!
Job Done for ROI- 169
Stored ROI file the shared arrays!
Job Done for ROI- 187
Stored ROI file the shared arrays!
Job Done for ROI- 178
Stored ROI file the shared arrays!
Job Done for ROI- 196
Stored ROI file the shared arrays!
Job Done for ROI- 205
Stored ROI file the shared arrays!
Job Done for ROI- 214
Stored ROI file the shared arrays!
Job Done for ROI- 152
Stored ROI file the shared arrays!
Job Done for ROI- 161
Stored ROI file the shared arrays!
Job Done for ROI- 170
Stored ROI file the shared arrays!
Job Done for ROI- 179
Stored ROI file the shared arrays!
Job Done for ROI- 188
Stored ROI file the shared arrays!
Job Done for ROI- 197
Stored ROI file the shared arrays!
Job Done for ROI- 206
Stored ROI file the shared arrays!
Job Done for ROI- 215
Stored ROI file the shared arrays!
Job Done for ROI- 243
Stored ROI file the shared arrays!
Job Done for ROI- 225
Stored ROI file the shared arrays!
Job Done for ROI- 234
Stored ROI file the shared arrays!
Job Done for ROI- 216
Stored ROI file the shared arrays!
Job Done for ROI- 252
Stored ROI file the shared arrays!
Job Done for ROI- 270
Stored ROI file the shared arrays!
Job Done for ROI- 261
Stored ROI file the shared arrays!
Job Done for ROI- 217
Stored ROI file the shared arrays!
Job Done for ROI- 244
Stored ROI file the shared arrays!
Job Done for ROI- 226
Stored ROI file the shared arrays!
Job Done for ROI- 235
Stored ROI file the shared arrays!
Job Done for ROI- 271
Stored ROI file the shared arrays!
Job Done for ROI- 262
Stored ROI file the shared arrays!
Job Done for ROI- 253
Stored ROI file the shared arrays!
Job Done for ROI- 272
Stored ROI file the shared arrays!
Job Done for ROI- 245
Stored ROI file the shared arrays!
Job Done for ROI- 218
Stored ROI file the shared arrays!
Job Done for ROI- 236
Stored ROI file the shared arrays!
Job Done for ROI- 227
Stored ROI file the shared arrays!
Job Done for ROI- 263
Stored ROI file the shared arrays!
Job Done for ROI- 254
Stored ROI file the shared arrays!
Job Done for ROI- 228
Stored ROI file the shared arrays!
Job Done for ROI- 273
Stored ROI file the shared arrays!
Job Done for ROI- 246
Stored ROI file the shared arrays!
Job Done for ROI- 237
Stored ROI file the shared arrays!
Job Done for ROI- 219
Stored ROI file the shared arrays!
Job Done for ROI- 255
Stored ROI file the shared arrays!
Job Done for ROI- 264
Stored ROI file the shared arrays!
Job Done for ROI- 229
Stored ROI file the shared arrays!
Job Done for ROI- 247
Stored ROI file the shared arrays!
Job Done for ROI- 220
Stored ROI file the shared arrays!
Job Done for ROI- 265
Stored ROI file the shared arrays!
Job Done for ROI- 238
Stored ROI file the shared arrays!
Job Done for ROI- 256
Stored ROI file the shared arrays!
Job Done for ROI- 230
Stored ROI file the shared arrays!
Job Done for ROI- 248
Stored ROI file the shared arrays!
Job Done for ROI- 239
Stored ROI file the shared arrays!
Job Done for ROI- 221
Stored ROI file the shared arrays!
Job Done for ROI- 231
Stored ROI file the shared arrays!
Job Done for ROI- 266
Stored ROI file the shared arrays!
Job Done for ROI- 257
Stored ROI file the shared arrays!
Job Done for ROI- 240
Stored ROI file the shared arrays!
Job Done for ROI- 249
Stored ROI file the shared arrays!
Job Done for ROI- 222
Stored ROI file the shared arrays!
Job Done for ROI- 267
Stored ROI file the shared arrays!
Job Done for ROI- 232
Stored ROI file the shared arrays!
Job Done for ROI- 241
Stored ROI file the shared arrays!
Job Done for ROI- 250
Stored ROI file the shared arrays!
Job Done for ROI- 258
Stored ROI file the shared arrays!
Job Done for ROI- 223
Stored ROI file the shared arrays!
Job Done for ROI- 268
Stored ROI file the shared arrays!
Job Done for ROI- 251
Stored ROI file the shared arrays!
Job Done for ROI- 259
Stored ROI file the shared arrays!
Job Done for ROI- 233
Stored ROI file the shared arrays!
Job Done for ROI- 242
Stored ROI file the shared arrays!
Job Done for ROI- 224
Stored ROI file the shared arrays!
Job Done for ROI- 269
Stored ROI file the shared arrays!
Job Done for ROI- 260
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 0
Job Done for ROI- 45
Job Done for ROI- 27
Job Done for ROI- 18
Job Done for ROI- 9
Job Done for ROI- 36
Job Done for ROI- 63
Job Done for ROI- 54
Stored ROI file the shared arrays!
Job Done for ROI- 19
Stored ROI file the shared arrays!
Job Done for ROI- 64
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 1
Job Done for ROI- 37
Stored ROI file the shared arrays!
Job Done for ROI- 10
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 46
Job Done for ROI- 28
Stored ROI file the shared arrays!
Job Done for ROI- 55
Stored ROI file the shared arrays!
Job Done for ROI- 20
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 65
Job Done for ROI- 2
Job Done for ROI- 38
Stored ROI file the shared arrays!
Job Done for ROI- 29
Stored ROI file the shared arrays!
Job Done for ROI- 56
Stored ROI file the shared arrays!
Job Done for ROI- 47
Stored ROI file the shared arrays!
Job Done for ROI- 11
Stored ROI file the shared arrays!
Job Done for ROI- 21
Stored ROI file the shared arrays!
Job Done for ROI- 66
Stored ROI file the shared arrays!
Job Done for ROI- 3
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 30
Job Done for ROI- 39
Stored ROI file the shared arrays!
Job Done for ROI- 57
Stored ROI file the shared arrays!
Job Done for ROI- 48
Stored ROI file the shared arrays!
Job Done for ROI- 12
Stored ROI file the shared arrays!
Job Done for ROI- 22
Stored ROI file the shared arrays!
Job Done for ROI- 67
Stored ROI file the shared arrays!
Job Done for ROI- 4
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 40
Job Done for ROI- 31
Stored ROI file the shared arrays!
Job Done for ROI- 58
Stored ROI file the shared arrays!
Job Done for ROI- 49
Stored ROI file the shared arrays!
Job Done for ROI- 13
Stored ROI file the shared arrays!
Job Done for ROI- 23
Stored ROI file the shared arrays!
Job Done for ROI- 68
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 5
Stored ROI file the shared arrays!
Job Done for ROI- 59
Job Done for ROI- 41
Stored ROI file the shared arrays!
Job Done for ROI- 32
Stored ROI file the shared arrays!
Job Done for ROI- 50
Stored ROI file the shared arrays!
Job Done for ROI- 14
Stored ROI file the shared arrays!
Job Done for ROI- 24
Stored ROI file the shared arrays!
Job Done for ROI- 69
Stored ROI file the shared arrays!
Job Done for ROI- 60
Stored ROI file the shared arrays!
Job Done for ROI- 6
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 51
Job Done for ROI- 33
Stored ROI file the shared arrays!
Job Done for ROI- 42
Stored ROI file the shared arrays!
Job Done for ROI- 15
Stored ROI file the shared arrays!
Job Done for ROI- 25
Stored ROI file the shared arrays!
Job Done for ROI- 34
Stored ROI file the shared arrays!
Job Done for ROI- 61
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 70
Job Done for ROI- 7
Stored ROI file the shared arrays!
Job Done for ROI- 52
Stored ROI file the shared arrays!
Job Done for ROI- 43
Stored ROI file the shared arrays!
Job Done for ROI- 16
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 26
Job Done for ROI- 35
Stored ROI file the shared arrays!
Job Done for ROI- 62
Stored ROI file the shared arrays!
Job Done for ROI- 71
Job Done for ROI- 44
Stored ROI file the shared arrays!
Job Done for ROI- 8
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 53
Stored ROI file the shared arrays!
Job Done for ROI- 17
Stored ROI file the shared arrays!
Job Done for ROI- 81
Stored ROI file the shared arrays!
Job Done for ROI- 72
Stored ROI file the shared arrays!
Job Done for ROI- 90
Stored ROI file the shared arrays!
Job Done for ROI- 99
Stored ROI file the shared arrays!
Job Done for ROI- 108
Stored ROI file the shared arrays!
Job Done for ROI- 117
Stored ROI file the shared arrays!
Job Done for ROI- 135
Stored ROI file the shared arrays!
Job Done for ROI- 126
Stored ROI file the shared arrays!
Job Done for ROI- 82
Stored ROI file the shared arrays!
Job Done for ROI- 73
Stored ROI file the shared arrays!
Job Done for ROI- 91
Stored ROI file the shared arrays!
Job Done for ROI- 100
Stored ROI file the shared arrays!
Job Done for ROI- 109
Stored ROI file the shared arrays!
Job Done for ROI- 118
Stored ROI file the shared arrays!
Job Done for ROI- 136
Stored ROI file the shared arrays!
Job Done for ROI- 127
Stored ROI file the shared arrays!
Job Done for ROI- 83
Stored ROI file the shared arrays!
Job Done for ROI- 74
Stored ROI file the shared arrays!
Job Done for ROI- 92
Stored ROI file the shared arrays!
Job Done for ROI- 101
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 110
Job Done for ROI- 119
Stored ROI file the shared arrays!
Job Done for ROI- 137
Stored ROI file the shared arrays!
Job Done for ROI- 128
Stored ROI file the shared arrays!
Job Done for ROI- 84
Stored ROI file the shared arrays!
Job Done for ROI- 75
Stored ROI file the shared arrays!
Job Done for ROI- 93
Stored ROI file the shared arrays!
Job Done for ROI- 102
Stored ROI file the shared arrays!
Job Done for ROI- 120
Stored ROI file the shared arrays!
Job Done for ROI- 111
Stored ROI file the shared arrays!
Job Done for ROI- 138
Stored ROI file the shared arrays!
Job Done for ROI- 129
Stored ROI file the shared arrays!
Job Done for ROI- 76
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 85
Job Done for ROI- 94
Stored ROI file the shared arrays!
Job Done for ROI- 103
Stored ROI file the shared arrays!
Job Done for ROI- 112
Stored ROI file the shared arrays!
Job Done for ROI- 139
Stored ROI file the shared arrays!
Job Done for ROI- 121
Stored ROI file the shared arrays!
Job Done for ROI- 130
Stored ROI file the shared arrays!
Job Done for ROI- 77
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 86
Job Done for ROI- 95
Stored ROI file the shared arrays!
Job Done for ROI- 104
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 140
Job Done for ROI- 122
Stored ROI file the shared arrays!
Job Done for ROI- 113
Stored ROI file the shared arrays!
Job Done for ROI- 131
Stored ROI file the shared arrays!
Job Done for ROI- 78
Stored ROI file the shared arrays!
Job Done for ROI- 87
Stored ROI file the shared arrays!
Job Done for ROI- 96
Stored ROI file the shared arrays!
Job Done for ROI- 105
Stored ROI file the shared arrays!
Job Done for ROI- 141
Stored ROI file the shared arrays!
Job Done for ROI- 123
Stored ROI file the shared arrays!
Job Done for ROI- 114
Stored ROI file the shared arrays!
Job Done for ROI- 132
Stored ROI file the shared arrays!
Job Done for ROI- 79
Stored ROI file the shared arrays!
Job Done for ROI- 88
Stored ROI file the shared arrays!
Job Done for ROI- 97
Stored ROI file the shared arrays!
Job Done for ROI- 106
Stored ROI file the shared arrays!
Job Done for ROI- 124
Stored ROI file the shared arrays!
Job Done for ROI- 142
Stored ROI file the shared arrays!
Job Done for ROI- 115
Stored ROI file the shared arrays!
Job Done for ROI- 133
Stored ROI file the shared arrays!
Job Done for ROI- 80
Stored ROI file the shared arrays!
Job Done for ROI- 89
Stored ROI file the shared arrays!
Job Done for ROI- 98
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 125
Job Done for ROI- 107
Stored ROI file the shared arrays!
Job Done for ROI- 143
Stored ROI file the shared arrays!
Job Done for ROI- 116
Stored ROI file the shared arrays!
Job Done for ROI- 134
Stored ROI file the shared arrays!
Job Done for ROI- 144
Stored ROI file the shared arrays!
Job Done for ROI- 153
Stored ROI file the shared arrays!
Job Done for ROI- 162
Stored ROI file the shared arrays!
Job Done for ROI- 171
Stored ROI file the shared arrays!
Job Done for ROI- 180
Stored ROI file the shared arrays!
Job Done for ROI- 189
Stored ROI file the shared arrays!
Job Done for ROI- 198
Stored ROI file the shared arrays!
Job Done for ROI- 207
Stored ROI file the shared arrays!
Job Done for ROI- 145
Stored ROI file the shared arrays!
Job Done for ROI- 154
Stored ROI file the shared arrays!
Job Done for ROI- 163
Stored ROI file the shared arrays!
Job Done for ROI- 172
Stored ROI file the shared arrays!
Job Done for ROI- 181
Stored ROI file the shared arrays!
Job Done for ROI- 190
Stored ROI file the shared arrays!
Job Done for ROI- 199
Stored ROI file the shared arrays!
Job Done for ROI- 208
Stored ROI file the shared arrays!
Job Done for ROI- 155
Stored ROI file the shared arrays!
Job Done for ROI- 146
Stored ROI file the shared arrays!
Job Done for ROI- 164
Stored ROI file the shared arrays!
Job Done for ROI- 173
Stored ROI file the shared arrays!
Job Done for ROI- 182
Stored ROI file the shared arrays!
Job Done for ROI- 191
Stored ROI file the shared arrays!
Job Done for ROI- 200
Stored ROI file the shared arrays!
Job Done for ROI- 209
Stored ROI file the shared arrays!
Job Done for ROI- 147
Stored ROI file the shared arrays!
Job Done for ROI- 156
Stored ROI file the shared arrays!
Job Done for ROI- 165
Stored ROI file the shared arrays!
Job Done for ROI- 174
Stored ROI file the shared arrays!
Job Done for ROI- 183
Stored ROI file the shared arrays!
Job Done for ROI- 192
Stored ROI file the shared arrays!
Job Done for ROI- 201
Stored ROI file the shared arrays!
Job Done for ROI- 210
Stored ROI file the shared arrays!
Job Done for ROI- 148
Stored ROI file the shared arrays!
Job Done for ROI- 157
Stored ROI file the shared arrays!
Job Done for ROI- 166
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 184
Job Done for ROI- 175
Stored ROI file the shared arrays!
Job Done for ROI- 193
Stored ROI file the shared arrays!
Job Done for ROI- 202
Stored ROI file the shared arrays!
Job Done for ROI- 211
Stored ROI file the shared arrays!
Job Done for ROI- 149
Stored ROI file the shared arrays!
Job Done for ROI- 158
Stored ROI file the shared arrays!
Job Done for ROI- 167
Stored ROI file the shared arrays!
Job Done for ROI- 185
Stored ROI file the shared arrays!
Job Done for ROI- 176
Stored ROI file the shared arrays!
Job Done for ROI- 194
Stored ROI file the shared arrays!
Job Done for ROI- 203
Stored ROI file the shared arrays!
Job Done for ROI- 212
Stored ROI file the shared arrays!
Job Done for ROI- 150
Stored ROI file the shared arrays!
Job Done for ROI- 159
Stored ROI file the shared arrays!
Job Done for ROI- 168
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 177
Job Done for ROI- 186
Stored ROI file the shared arrays!
Job Done for ROI- 195
Stored ROI file the shared arrays!
Job Done for ROI- 204
Stored ROI file the shared arrays!
Job Done for ROI- 213
Stored ROI file the shared arrays!
Job Done for ROI- 151
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 160
Job Done for ROI- 169
Stored ROI file the shared arrays!
Job Done for ROI- 187
Stored ROI file the shared arrays!
Job Done for ROI- 178
Stored ROI file the shared arrays!
Job Done for ROI- 196
Stored ROI file the shared arrays!
Job Done for ROI- 205
Stored ROI file the shared arrays!
Job Done for ROI- 214
Stored ROI file the shared arrays!
Job Done for ROI- 152
Stored ROI file the shared arrays!
Job Done for ROI- 170
Stored ROI file the shared arrays!
Job Done for ROI- 161
Stored ROI file the shared arrays!
Job Done for ROI- 188
Stored ROI file the shared arrays!
Job Done for ROI- 179
Stored ROI file the shared arrays!
Job Done for ROI- 197
Stored ROI file the shared arrays!
Job Done for ROI- 206
Stored ROI file the shared arrays!
Job Done for ROI- 215
Stored ROI file the shared arrays!
Job Done for ROI- 243
Stored ROI file the shared arrays!
Job Done for ROI- 216
Stored ROI file the shared arrays!
Job Done for ROI- 252
Stored ROI file the shared arrays!
Job Done for ROI- 225
Stored ROI file the shared arrays!
Job Done for ROI- 234
Stored ROI file the shared arrays!
Job Done for ROI- 270
Stored ROI file the shared arrays!
Job Done for ROI- 261
Stored ROI file the shared arrays!
Job Done for ROI- 244
Stored ROI file the shared arrays!
Job Done for ROI- 262
Stored ROI file the shared arrays!
Job Done for ROI- 271
Stored ROI file the shared arrays!
Job Done for ROI- 253
Stored ROI file the shared arrays!
Job Done for ROI- 226
Stored ROI file the shared arrays!
Job Done for ROI- 235
Stored ROI file the shared arrays!
Job Done for ROI- 217
Stored ROI file the shared arrays!
Job Done for ROI- 245
Stored ROI file the shared arrays!
Job Done for ROI- 263
Stored ROI file the shared arrays!
Job Done for ROI- 272
Stored ROI file the shared arrays!
Job Done for ROI- 254
Stored ROI file the shared arrays!
Job Done for ROI- 236
Stored ROI file the shared arrays!
Job Done for ROI- 218
Stored ROI file the shared arrays!
Job Done for ROI- 227
Stored ROI file the shared arrays!
Job Done for ROI- 246
Stored ROI file the shared arrays!
Job Done for ROI- 264
Stored ROI file the shared arrays!
Job Done for ROI- 255
Stored ROI file the shared arrays!
Job Done for ROI- 273
Stored ROI file the shared arrays!
Job Done for ROI- 237
Stored ROI file the shared arrays!
Job Done for ROI- 219
Stored ROI file the shared arrays!
Job Done for ROI- 228
Stored ROI file the shared arrays!
Job Done for ROI- 247
Stored ROI file the shared arrays!
Job Done for ROI- 265
Stored ROI file the shared arrays!
Job Done for ROI- 256
Stored ROI file the shared arrays!
Job Done for ROI- 220
Stored ROI file the shared arrays!
Job Done for ROI- 238
Stored ROI file the shared arrays!
Job Done for ROI- 248
Stored ROI file the shared arrays!
Job Done for ROI- 229
Stored ROI file the shared arrays!
Job Done for ROI- 266
Stored ROI file the shared arrays!
Job Done for ROI- 221
Stored ROI file the shared arrays!
Job Done for ROI- 257
Stored ROI file the shared arrays!
Job Done for ROI- 239
Stored ROI file the shared arrays!
Job Done for ROI- 230
Stored ROI file the shared arrays!
Job Done for ROI- 249
Stored ROI file the shared arrays!
Job Done for ROI- 222
Stored ROI file the shared arrays!
Job Done for ROI- 267
Stored ROI file the shared arrays!
Job Done for ROI- 231
Stored ROI file the shared arrays!
Job Done for ROI- 258
Stored ROI file the shared arrays!
Job Done for ROI- 240
Stored ROI file the shared arrays!
Job Done for ROI- 223
Stored ROI file the shared arrays!
Job Done for ROI- 250
Stored ROI file the shared arrays!
Job Done for ROI- 268
Stored ROI file the shared arrays!
Job Done for ROI- 232
Stored ROI file the shared arrays!
Job Done for ROI- 241
Stored ROI file the shared arrays!
Job Done for ROI- 259
Stored ROI file the shared arrays!
Job Done for ROI- 269
Stored ROI file the shared arrays!
Job Done for ROI- 251
Stored ROI file the shared arrays!
Job Done for ROI- 224
Stored ROI file the shared arrays!
Job Done for ROI- 242
Stored ROI file the shared arrays!
Job Done for ROI- 233
Stored ROI file the shared arrays!
Job Done for ROI- 260
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 45
Job Done for ROI- 54
Job Done for ROI- 36
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 0
Job Done for ROI- 9
Job Done for ROI- 63
Stored ROI file the shared arrays!
Job Done for ROI- 18
Job Done for ROI- 27
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 37
Job Done for ROI- 1
Job Done for ROI- 46
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 10
Job Done for ROI- 28
Stored ROI file the shared arrays!
Job Done for ROI- 64
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 55
Job Done for ROI- 19
Stored ROI file the shared arrays!
Job Done for ROI- 38
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 29
Job Done for ROI- 47
Stored ROI file the shared arrays!
Job Done for ROI- 56
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 65
Job Done for ROI- 2
Stored ROI file the shared arrays!
Job Done for ROI- 11
Stored ROI file the shared arrays!
Job Done for ROI- 20
Stored ROI file the shared arrays!
Job Done for ROI- 39
Stored ROI file the shared arrays!
Job Done for ROI- 30
Stored ROI file the shared arrays!
Job Done for ROI- 48
Stored ROI file the shared arrays!
Job Done for ROI- 12
Stored ROI file the shared arrays!
Job Done for ROI- 57
Stored ROI file the shared arrays!
Job Done for ROI- 21
Stored ROI file the shared arrays!
Job Done for ROI- 3
Stored ROI file the shared arrays!
Job Done for ROI- 66
Stored ROI file the shared arrays!
Job Done for ROI- 40
Stored ROI file the shared arrays!
Job Done for ROI- 31
Stored ROI file the shared arrays!
Job Done for ROI- 49
Stored ROI file the shared arrays!
Job Done for ROI- 13
Stored ROI file the shared arrays!
Job Done for ROI- 4
Stored ROI file the shared arrays!
Job Done for ROI- 58
Stored ROI file the shared arrays!
Job Done for ROI- 22
Stored ROI file the shared arrays!
Job Done for ROI- 67
Stored ROI file the shared arrays!
Job Done for ROI- 41
Stored ROI file the shared arrays!
Job Done for ROI- 32
Stored ROI file the shared arrays!
Job Done for ROI- 50
Stored ROI file the shared arrays!
Job Done for ROI- 14
Stored ROI file the shared arrays!
Job Done for ROI- 5
Stored ROI file the shared arrays!
Job Done for ROI- 59
Stored ROI file the shared arrays!
Job Done for ROI- 23
Stored ROI file the shared arrays!
Job Done for ROI- 68
Stored ROI file the shared arrays!
Job Done for ROI- 42
Stored ROI file the shared arrays!
Job Done for ROI- 33
Stored ROI file the shared arrays!
Job Done for ROI- 51
Stored ROI file the shared arrays!
Job Done for ROI- 6
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 15
Job Done for ROI- 60
Stored ROI file the shared arrays!
Job Done for ROI- 24
Stored ROI file the shared arrays!
Job Done for ROI- 69
Stored ROI file the shared arrays!
Job Done for ROI- 43
Stored ROI file the shared arrays!
Job Done for ROI- 34
Stored ROI file the shared arrays!
Job Done for ROI- 7
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 61
Job Done for ROI- 16
Stored ROI file the shared arrays!
Job Done for ROI- 52
Stored ROI file the shared arrays!
Job Done for ROI- 25
Stored ROI file the shared arrays!
Job Done for ROI- 70
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 35
Job Done for ROI- 44
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 8
Job Done for ROI- 62
Stored ROI file the shared arrays!
Job Done for ROI- 17
Stored ROI file the shared arrays!
Job Done for ROI- 53
Job Done for ROI- 26
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 71
Stored ROI file the shared arrays!
Job Done for ROI- 72
Stored ROI file the shared arrays!
Job Done for ROI- 81
Stored ROI file the shared arrays!
Job Done for ROI- 90
Stored ROI file the shared arrays!
Job Done for ROI- 99
Stored ROI file the shared arrays!
Job Done for ROI- 108
Stored ROI file the shared arrays!
Job Done for ROI- 117
Stored ROI file the shared arrays!
Job Done for ROI- 126
Stored ROI file the shared arrays!
Job Done for ROI- 135
Stored ROI file the shared arrays!
Job Done for ROI- 82
Stored ROI file the shared arrays!
Stored ROI file the shared arrays!
Job Done for ROI- 91
Job Done for ROI- 73
Stored ROI file the shared arrays!
Job Done for ROI- 100
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CPU times: user 54.2 s, sys: 1min 9s, total: 2min 3s
Wall time: 7min 24s
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CPU times: user 1.08 s, sys: 2.08 s, total: 3.16 s
Wall time: 7.95 s
CPU times: user 1min 11s, sys: 2min 44s, total: 3min 56s
Wall time: 10min 49s
In [44]:
wf_name
# To Stop execution Raise error:
# raise Exception('Execution stops here!')
Out[44]:
'functionalConnectivity_GSR0_fisher1'
(ERROR) Results:
ROIs along with their voxels significant with q < 0.05
Options:
Fisher's transform = True
Global Signal Removed = True
{(ROI,Voxels)}
{(3, 1), (5, 3), (18, 40), (20, 51), (21, 15), (24, 88), (30, 4), (37, 21), (38, 12), (40, 506), (41, 862), (44, 55), (46, 31), (47, 779), (83, 3), (84, 1), (92, 10), (96, 6), (105, 8), (107, 4), (118, 11), (120, 35), (140, 43), (152, 90), (153, 2), (158, 4), (166, 12), (167, 27), (177, 1), (181, 87), (185, 5), (200, 3), (214, 16), (224, 1), (227, 3), (228, 1), (232, 11), (233, 5), (234, 94), (244, 7), (247, 15), (256, 6), (263, 15), (273, 4)}
GSR = 0, Fisher = 0
Folder Name: functionalConnectivity_GSR0_fisher0
{(ROI_number, Significant voxels)} at Q<0.5 :
{(2, 1),
(4, 2),
(6, 1),
(18, 16),
(26, 8),
(38, 11),
(42, 4),
(51, 28),
(54, 1),
(60, 33),
(61, 1),
(73, 1),
(76, 27),
(77, 8),
(83, 6),
(92, 4),
(144, 1),
(156, 22),
(165, 37),
(166, 85),
(167, 283),
(169, 3),
(171, 1),
(172, 4),
(173, 12),
(179, 6),
(201, 1),
(213, 1),
(227, 1),
(232, 7),
(236, 226),
(241, 2)}
GSR = 0, Fisher = 1
In [ ]:
Content source: varun-invent/Autism-Connectome-Analysis
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