Initialize the simulation with the tardis_example.yml configuration file.
In [2]:
from tardis.io.config_reader import Configuration
from tardis.model import Radial1DModel
from tardis.simulation import Simulation
# Must have the tardis_example folder in the working directory.
config_fname = 'tardis_example/tardis_example.yml'
tardis_config = Configuration.from_yaml(config_fname)
model = Radial1DModel(tardis_config)
simulation = Simulation(tardis_config)
tardis.io.config_reader - INFO - Reading Atomic Data from tardis_example/kurucz_cd23_chianti_H_He.h5
tardis.atomic - INFO - Read Atom Data with UUID=5ca3035ca8b311e3bb684437e69d75d7 and MD5=21095dd25faa1683f4c90c911a00c3f8
tardis.io.config_reader - INFO - "initial_t_inner" is not specified in the plasma section - initializing to 9933.95199592 K with given luminosity
tardis.io.config_reader - WARNING - No "species" given - ignoring other NLTE options given:
OrderedDict([('coronal_approximation', False), ('classical_nebular', False)])
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
Run the simulation while storing all its iterations to an HDF file.
The first parameter is the path where the HDF file should be stored. The second parameter determines which properties will be stored. When its value is 'input', only Input plasma properties will be stored. The third parameter, hdf_last_only, if True will only store the last iteration of the simulation, otherwise every iteration will be stored.
In [3]:
simulation.legacy_run_simulation(model, '/tmp/full_example.hdf', 'full', hdf_last_only=False)
tardis.simulation.base - INFO - Remaining run 20
tardis.simulation.base - INFO - Luminosity emitted = 7.96033e+42 erg / s Luminosity absorbed = 2.64155e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 9926.501965 10178.847299 0.400392 0.497507
5 9852.611678 10369.295730 0.211205 0.187775
10 9779.813302 10216.758348 0.142695 0.114941
15 9708.082813 9970.054217 0.104556 0.084019
tardis.simulation.base - INFO - t_inner 9933.952 K -- next t_inner 11459.378 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
py.warnings - WARNING - /home/ftsamis/anaconda2/envs/tardis/lib/python2.7/site-packages/pandas/io/pytables.py:2577: PerformanceWarning:
your performance may suffer as PyTables will pickle object types that it cannot
map directly to c-types [inferred_type->mixed,key->block0_values] [items->[0]]
warnings.warn(ws, PerformanceWarning)
tardis.simulation.base - INFO - Remaining run 19
tardis.simulation.base - INFO - Luminosity emitted = 1.40992e+43 erg / s Luminosity absorbed = 4.66880e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10178.847299 11571.630571 0.497507 0.528891
5 10369.295730 11639.658719 0.187775 0.212796
10 10216.758348 11307.611990 0.114941 0.135974
15 9970.054217 11014.938341 0.084019 0.100935
tardis.simulation.base - INFO - t_inner 11459.378 K -- next t_inner 9932.734 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 18
tardis.simulation.base - INFO - Luminosity emitted = 8.08011e+42 erg / s Luminosity absorbed = 2.52343e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11571.630571 10470.275968 0.528891 0.437266
5 11639.658719 10807.317458 0.212796 0.161611
10 11307.611990 10595.281489 0.135974 0.101195
15 11014.938341 10227.284716 0.100935 0.077164
tardis.simulation.base - INFO - t_inner 9932.734 K -- next t_inner 11372.729 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 17
tardis.simulation.base - INFO - Luminosity emitted = 1.36647e+43 erg / s Luminosity absorbed = 4.54437e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10470.275968 11608.335004 0.437266 0.505287
5 10807.317458 11697.606272 0.161611 0.200153
10 10595.281489 11435.859233 0.101195 0.126663
15 10227.284716 11050.826908 0.077164 0.095893
tardis.simulation.base - INFO - t_inner 11372.729 K -- next t_inner 10013.126 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 16
tardis.simulation.base - INFO - Luminosity emitted = 8.30340e+42 erg / s Luminosity absorbed = 2.63966e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11608.335004 10565.362018 0.505287 0.443312
5 11697.606272 10983.556971 0.200153 0.158241
10 11435.859233 10750.431319 0.126663 0.098824
15 11050.826908 10356.249101 0.095893 0.076076
tardis.simulation.base - INFO - t_inner 10013.126 K -- next t_inner 11309.576 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 15
tardis.simulation.base - INFO - Luminosity emitted = 1.34658e+43 erg / s Luminosity absorbed = 4.34429e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10565.362018 11478.282430 0.443312 0.513052
5 10983.556971 11755.783299 0.158241 0.194266
10 10750.431319 11448.648154 0.098824 0.124291
15 10356.249101 11096.197414 0.076076 0.093099
tardis.simulation.base - INFO - t_inner 11309.576 K -- next t_inner 10030.795 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 14
tardis.simulation.base - INFO - Luminosity emitted = 8.34165e+42 erg / s Luminosity absorbed = 2.67751e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11478.282430 10623.738370 0.513052 0.433783
5 11755.783299 11070.101670 0.194266 0.155108
10 11448.648154 10808.067614 0.124291 0.097959
15 11096.197414 10405.862182 0.093099 0.074787
tardis.simulation.base - INFO - t_inner 10030.795 K -- next t_inner 11303.531 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 13
tardis.simulation.base - INFO - Luminosity emitted = 1.33656e+43 erg / s Luminosity absorbed = 4.40498e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10623.738370 11498.818693 0.433783 0.508315
5 11070.101670 11666.501329 0.155108 0.197676
10 10808.067614 11442.955962 0.097959 0.123946
15 10405.862182 11020.034976 0.074787 0.095226
tardis.simulation.base - INFO - t_inner 11303.531 K -- next t_inner 10062.914 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 12
tardis.simulation.base - INFO - Luminosity emitted = 8.46354e+42 erg / s Luminosity absorbed = 2.69714e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11498.818693 10647.866376 0.508315 0.436795
5 11666.501329 11045.489008 0.197676 0.157595
10 11442.955962 10847.411669 0.123946 0.098109
15 11020.034976 10380.366497 0.095226 0.077053
tardis.simulation.base - INFO - t_inner 10062.914 K -- next t_inner 11257.771 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 11
tardis.simulation.base - INFO - Luminosity emitted = 1.31182e+43 erg / s Luminosity absorbed = 4.36200e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10647.866376 11497.910067 0.436795 0.506422
5 11045.489008 11708.194588 0.157595 0.194059
10 10847.411669 11369.876746 0.098109 0.124261
15 10380.366497 11074.943400 0.077053 0.091596
tardis.simulation.base - INFO - t_inner 11257.771 K -- next t_inner 10116.260 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 10
tardis.simulation.base - INFO - Luminosity emitted = 8.64601e+42 erg / s Luminosity absorbed = 2.75713e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11497.910067 10658.108570 0.506422 0.442424
5 11708.194588 10976.263048 0.194059 0.164630
10 11369.876746 10843.425806 0.124261 0.099291
15 11074.943400 10435.716429 0.091596 0.076242
tardis.simulation.base - INFO - t_inner 10116.260 K -- next t_inner 11197.386 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 9
tardis.simulation.base - INFO - Luminosity emitted = 1.29557e+43 erg / s Luminosity absorbed = 4.15837e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10658.108570 11478.296887 0.442424 0.493588
5 10976.263048 11679.173270 0.164630 0.191540
10 10843.425806 11490.833906 0.099291 0.118832
15 10435.716429 11110.058621 0.076242 0.089509
tardis.simulation.base - INFO - t_inner 11197.386 K -- next t_inner 10124.899 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 8
tardis.simulation.base - INFO - Luminosity emitted = 8.65501e+42 erg / s Luminosity absorbed = 2.78370e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11478.296887 10677.156574 0.493588 0.440400
5 11679.173270 11111.367299 0.191540 0.158564
10 11490.833906 10872.011689 0.118832 0.098784
15 11110.058621 10450.659577 0.089509 0.076628
tardis.simulation.base - INFO - t_inner 10124.899 K -- next t_inner 11201.122 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 7
tardis.simulation.base - INFO - Luminosity emitted = 1.28875e+43 erg / s Luminosity absorbed = 4.24569e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10677.156574 11497.715452 0.440400 0.491399
5 11111.367299 11679.730149 0.158564 0.191832
10 10872.011689 11406.165607 0.098784 0.120992
15 10450.659577 11110.848584 0.076628 0.089157
tardis.simulation.base - INFO - t_inner 11201.122 K -- next t_inner 10155.063 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 6
tardis.simulation.base - INFO - Luminosity emitted = 8.75375e+42 erg / s Luminosity absorbed = 2.82292e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11497.715452 10659.800239 0.491399 0.452245
5 11679.730149 11052.553607 0.191832 0.164140
10 11406.165607 10786.600051 0.120992 0.102983
15 11110.848584 10402.919519 0.089157 0.078084
tardis.simulation.base - INFO - t_inner 10155.063 K -- next t_inner 11170.949 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 5
tardis.simulation.base - INFO - Luminosity emitted = 1.27525e+43 erg / s Luminosity absorbed = 4.19494e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10659.800239 11418.366335 0.452245 0.502809
5 11052.553607 11651.982083 0.164140 0.190958
10 10786.600051 11383.484120 0.102983 0.120709
15 10402.919519 11015.171956 0.078084 0.091113
tardis.simulation.base - INFO - t_inner 11170.949 K -- next t_inner 10181.150 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 4
tardis.simulation.base - INFO - Luminosity emitted = 8.90701e+42 erg / s Luminosity absorbed = 2.79118e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11418.366335 10708.718613 0.502809 0.446783
5 11651.982083 11168.510192 0.190958 0.158326
10 11383.484120 10980.154176 0.120709 0.098042
15 11015.171956 10446.799182 0.091113 0.078283
tardis.simulation.base - INFO - t_inner 10181.150 K -- next t_inner 11102.876 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 3
tardis.simulation.base - INFO - Luminosity emitted = 1.24835e+43 erg / s Luminosity absorbed = 4.05721e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 10708.718613 11427.883632 0.446783 0.489513
5 11168.510192 11606.341840 0.158326 0.189838
10 10980.154176 11386.202955 0.098042 0.118663
15 10446.799182 11072.393582 0.078283 0.087588
tardis.simulation.base - INFO - t_inner 11102.876 K -- next t_inner 10227.566 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Remaining run 2
tardis.simulation.base - INFO - Luminosity emitted = 9.03062e+42 erg / s Luminosity absorbed = 2.88133e+42 erg / s Luminosity requested = 1.05928e+43 erg / s
tardis.simulation.base - INFO - Plasma stratification:
t_rad next_t_rad w next_w
Shell
0 11427.883632 10851.556588 0.489513 0.434476
5 11606.341840 11231.251082 0.189838 0.156921
10 11386.202955 10841.393480 0.118663 0.103295
15 11072.393582 10574.899924 0.087588 0.075600
tardis.simulation.base - INFO - t_inner 10227.566 K -- next t_inner 11076.900 K
tardis.model - INFO - Calculating J_blues for radiative_rates_type=dilute-blackbody
tardis.simulation.base - INFO - Doing last run
tardis.simulation.base - INFO - Finished in 19 iterations and took 61.07 s
Open the stored HDF file with pandas and print its structure.
In [6]:
import pandas as pd
data = pd.HDFStore('/tmp/full_example.hdf')
print data
<class 'pandas.io.pytables.HDFStore'>
File path: /tmp/full_example.hdf
/simulation1/model/arrays frame (shape->[20,4])
/simulation1/model/metadata series (shape->[1])
/simulation1/model/plasma/abundance frame (shape->[6,20])
/simulation1/model/plasma/atomic_mass series (shape->[6])
/simulation1/model/plasma/beta_rad series (shape->[20])
/simulation1/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation1/model/plasma/density series (shape->[20])
/simulation1/model/plasma/electron_densities series (shape->[20])
/simulation1/model/plasma/excitation_energy series (shape->[4439])
/simulation1/model/plasma/f_lu series (shape->[29224])
/simulation1/model/plasma/g series (shape->[4439])
/simulation1/model/plasma/g_electron series (shape->[20])
/simulation1/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation1/model/plasma/ion_number_density frame (shape->[94,20])
/simulation1/model/plasma/ionization_data frame (shape->[88,1])
/simulation1/model/plasma/j_blues frame (shape->[29224,20])
/simulation1/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation1/model/plasma/level_number_density frame (shape->[4439,20])
/simulation1/model/plasma/levels frame (shape->[1,1])
/simulation1/model/plasma/lines frame (shape->[29224,12])
/simulation1/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation1/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation1/model/plasma/metastability series (shape->[4439])
/simulation1/model/plasma/nu series (shape->[29224])
/simulation1/model/plasma/number_density frame (shape->[6,20])
/simulation1/model/plasma/partition_function frame (shape->[94,20])
/simulation1/model/plasma/phi frame (shape->[88,20])
/simulation1/model/plasma/scalars series (shape->[2])
/simulation1/model/plasma/selected_atoms series (shape->[6])
/simulation1/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation1/model/plasma/t_electrons series (shape->[20])
/simulation1/model/plasma/t_rad series (shape->[20])
/simulation1/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation1/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation1/model/plasma/w series (shape->[20])
/simulation1/model/plasma/wavelength_cm series (shape->[29224])
/simulation1/model/scalars series (shape->[1])
/simulation1/runner/j_estimator series (shape->[20])
/simulation1/runner/nu_bar_estimator series (shape->[20])
/simulation1/runner/output_energy series (shape->[40000])
/simulation1/runner/output_nu series (shape->[40000])
/simulation10/model/arrays frame (shape->[20,4])
/simulation10/model/metadata series (shape->[1])
/simulation10/model/plasma/abundance frame (shape->[6,20])
/simulation10/model/plasma/atomic_mass series (shape->[6])
/simulation10/model/plasma/beta_rad series (shape->[20])
/simulation10/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation10/model/plasma/density series (shape->[20])
/simulation10/model/plasma/electron_densities series (shape->[20])
/simulation10/model/plasma/excitation_energy series (shape->[4439])
/simulation10/model/plasma/f_lu series (shape->[29224])
/simulation10/model/plasma/g series (shape->[4439])
/simulation10/model/plasma/g_electron series (shape->[20])
/simulation10/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation10/model/plasma/ion_number_density frame (shape->[94,20])
/simulation10/model/plasma/ionization_data frame (shape->[88,1])
/simulation10/model/plasma/j_blues frame (shape->[29224,20])
/simulation10/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation10/model/plasma/level_number_density frame (shape->[4439,20])
/simulation10/model/plasma/levels frame (shape->[1,1])
/simulation10/model/plasma/lines frame (shape->[29224,12])
/simulation10/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation10/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation10/model/plasma/metastability series (shape->[4439])
/simulation10/model/plasma/nu series (shape->[29224])
/simulation10/model/plasma/number_density frame (shape->[6,20])
/simulation10/model/plasma/partition_function frame (shape->[94,20])
/simulation10/model/plasma/phi frame (shape->[88,20])
/simulation10/model/plasma/scalars series (shape->[2])
/simulation10/model/plasma/selected_atoms series (shape->[6])
/simulation10/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation10/model/plasma/t_electrons series (shape->[20])
/simulation10/model/plasma/t_rad series (shape->[20])
/simulation10/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation10/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation10/model/plasma/w series (shape->[20])
/simulation10/model/plasma/wavelength_cm series (shape->[29224])
/simulation10/model/scalars series (shape->[1])
/simulation10/runner/j_estimator series (shape->[20])
/simulation10/runner/nu_bar_estimator series (shape->[20])
/simulation10/runner/output_energy series (shape->[40000])
/simulation10/runner/output_nu series (shape->[40000])
/simulation11/model/arrays frame (shape->[20,4])
/simulation11/model/metadata series (shape->[1])
/simulation11/model/plasma/abundance frame (shape->[6,20])
/simulation11/model/plasma/atomic_mass series (shape->[6])
/simulation11/model/plasma/beta_rad series (shape->[20])
/simulation11/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation11/model/plasma/density series (shape->[20])
/simulation11/model/plasma/electron_densities series (shape->[20])
/simulation11/model/plasma/excitation_energy series (shape->[4439])
/simulation11/model/plasma/f_lu series (shape->[29224])
/simulation11/model/plasma/g series (shape->[4439])
/simulation11/model/plasma/g_electron series (shape->[20])
/simulation11/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation11/model/plasma/ion_number_density frame (shape->[94,20])
/simulation11/model/plasma/ionization_data frame (shape->[88,1])
/simulation11/model/plasma/j_blues frame (shape->[29224,20])
/simulation11/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation11/model/plasma/level_number_density frame (shape->[4439,20])
/simulation11/model/plasma/levels frame (shape->[1,1])
/simulation11/model/plasma/lines frame (shape->[29224,12])
/simulation11/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation11/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation11/model/plasma/metastability series (shape->[4439])
/simulation11/model/plasma/nu series (shape->[29224])
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/simulation2/model/plasma/atomic_mass series (shape->[6])
/simulation2/model/plasma/beta_rad series (shape->[20])
/simulation2/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation2/model/plasma/density series (shape->[20])
/simulation2/model/plasma/electron_densities series (shape->[20])
/simulation2/model/plasma/excitation_energy series (shape->[4439])
/simulation2/model/plasma/f_lu series (shape->[29224])
/simulation2/model/plasma/g series (shape->[4439])
/simulation2/model/plasma/g_electron series (shape->[20])
/simulation2/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation2/model/plasma/ion_number_density frame (shape->[94,20])
/simulation2/model/plasma/ionization_data frame (shape->[88,1])
/simulation2/model/plasma/j_blues frame (shape->[29224,20])
/simulation2/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation2/model/plasma/level_number_density frame (shape->[4439,20])
/simulation2/model/plasma/levels frame (shape->[1,1])
/simulation2/model/plasma/lines frame (shape->[29224,12])
/simulation2/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation2/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation2/model/plasma/metastability series (shape->[4439])
/simulation2/model/plasma/nu series (shape->[29224])
/simulation2/model/plasma/number_density frame (shape->[6,20])
/simulation2/model/plasma/partition_function frame (shape->[94,20])
/simulation2/model/plasma/phi frame (shape->[88,20])
/simulation2/model/plasma/scalars series (shape->[2])
/simulation2/model/plasma/selected_atoms series (shape->[6])
/simulation2/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation2/model/plasma/t_electrons series (shape->[20])
/simulation2/model/plasma/t_rad series (shape->[20])
/simulation2/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation2/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation2/model/plasma/w series (shape->[20])
/simulation2/model/plasma/wavelength_cm series (shape->[29224])
/simulation2/model/scalars series (shape->[1])
/simulation2/runner/j_estimator series (shape->[20])
/simulation2/runner/nu_bar_estimator series (shape->[20])
/simulation2/runner/output_energy series (shape->[40000])
/simulation2/runner/output_nu series (shape->[40000])
/simulation3/model/arrays frame (shape->[20,4])
/simulation3/model/metadata series (shape->[1])
/simulation3/model/plasma/abundance frame (shape->[6,20])
/simulation3/model/plasma/atomic_mass series (shape->[6])
/simulation3/model/plasma/beta_rad series (shape->[20])
/simulation3/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation3/model/plasma/density series (shape->[20])
/simulation3/model/plasma/electron_densities series (shape->[20])
/simulation3/model/plasma/excitation_energy series (shape->[4439])
/simulation3/model/plasma/f_lu series (shape->[29224])
/simulation3/model/plasma/g series (shape->[4439])
/simulation3/model/plasma/g_electron series (shape->[20])
/simulation3/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation3/model/plasma/ion_number_density frame (shape->[94,20])
/simulation3/model/plasma/ionization_data frame (shape->[88,1])
/simulation3/model/plasma/j_blues frame (shape->[29224,20])
/simulation3/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation3/model/plasma/level_number_density frame (shape->[4439,20])
/simulation3/model/plasma/levels frame (shape->[1,1])
/simulation3/model/plasma/lines frame (shape->[29224,12])
/simulation3/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation3/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation3/model/plasma/metastability series (shape->[4439])
/simulation3/model/plasma/nu series (shape->[29224])
/simulation3/model/plasma/number_density frame (shape->[6,20])
/simulation3/model/plasma/partition_function frame (shape->[94,20])
/simulation3/model/plasma/phi frame (shape->[88,20])
/simulation3/model/plasma/scalars series (shape->[2])
/simulation3/model/plasma/selected_atoms series (shape->[6])
/simulation3/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation3/model/plasma/t_electrons series (shape->[20])
/simulation3/model/plasma/t_rad series (shape->[20])
/simulation3/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation3/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation3/model/plasma/w series (shape->[20])
/simulation3/model/plasma/wavelength_cm series (shape->[29224])
/simulation3/model/scalars series (shape->[1])
/simulation3/runner/j_estimator series (shape->[20])
/simulation3/runner/nu_bar_estimator series (shape->[20])
/simulation3/runner/output_energy series (shape->[40000])
/simulation3/runner/output_nu series (shape->[40000])
/simulation4/model/arrays frame (shape->[20,4])
/simulation4/model/metadata series (shape->[1])
/simulation4/model/plasma/abundance frame (shape->[6,20])
/simulation4/model/plasma/atomic_mass series (shape->[6])
/simulation4/model/plasma/beta_rad series (shape->[20])
/simulation4/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation4/model/plasma/density series (shape->[20])
/simulation4/model/plasma/electron_densities series (shape->[20])
/simulation4/model/plasma/excitation_energy series (shape->[4439])
/simulation4/model/plasma/f_lu series (shape->[29224])
/simulation4/model/plasma/g series (shape->[4439])
/simulation4/model/plasma/g_electron series (shape->[20])
/simulation4/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation4/model/plasma/ion_number_density frame (shape->[94,20])
/simulation4/model/plasma/ionization_data frame (shape->[88,1])
/simulation4/model/plasma/j_blues frame (shape->[29224,20])
/simulation4/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation4/model/plasma/level_number_density frame (shape->[4439,20])
/simulation4/model/plasma/levels frame (shape->[1,1])
/simulation4/model/plasma/lines frame (shape->[29224,12])
/simulation4/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation4/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation4/model/plasma/metastability series (shape->[4439])
/simulation4/model/plasma/nu series (shape->[29224])
/simulation4/model/plasma/number_density frame (shape->[6,20])
/simulation4/model/plasma/partition_function frame (shape->[94,20])
/simulation4/model/plasma/phi frame (shape->[88,20])
/simulation4/model/plasma/scalars series (shape->[2])
/simulation4/model/plasma/selected_atoms series (shape->[6])
/simulation4/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation4/model/plasma/t_electrons series (shape->[20])
/simulation4/model/plasma/t_rad series (shape->[20])
/simulation4/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation4/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation4/model/plasma/w series (shape->[20])
/simulation4/model/plasma/wavelength_cm series (shape->[29224])
/simulation4/model/scalars series (shape->[1])
/simulation4/runner/j_estimator series (shape->[20])
/simulation4/runner/nu_bar_estimator series (shape->[20])
/simulation4/runner/output_energy series (shape->[40000])
/simulation4/runner/output_nu series (shape->[40000])
/simulation5/model/arrays frame (shape->[20,4])
/simulation5/model/metadata series (shape->[1])
/simulation5/model/plasma/abundance frame (shape->[6,20])
/simulation5/model/plasma/atomic_mass series (shape->[6])
/simulation5/model/plasma/beta_rad series (shape->[20])
/simulation5/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation5/model/plasma/density series (shape->[20])
/simulation5/model/plasma/electron_densities series (shape->[20])
/simulation5/model/plasma/excitation_energy series (shape->[4439])
/simulation5/model/plasma/f_lu series (shape->[29224])
/simulation5/model/plasma/g series (shape->[4439])
/simulation5/model/plasma/g_electron series (shape->[20])
/simulation5/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation5/model/plasma/ion_number_density frame (shape->[94,20])
/simulation5/model/plasma/ionization_data frame (shape->[88,1])
/simulation5/model/plasma/j_blues frame (shape->[29224,20])
/simulation5/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation5/model/plasma/level_number_density frame (shape->[4439,20])
/simulation5/model/plasma/levels frame (shape->[1,1])
/simulation5/model/plasma/lines frame (shape->[29224,12])
/simulation5/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation5/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation5/model/plasma/metastability series (shape->[4439])
/simulation5/model/plasma/nu series (shape->[29224])
/simulation5/model/plasma/number_density frame (shape->[6,20])
/simulation5/model/plasma/partition_function frame (shape->[94,20])
/simulation5/model/plasma/phi frame (shape->[88,20])
/simulation5/model/plasma/scalars series (shape->[2])
/simulation5/model/plasma/selected_atoms series (shape->[6])
/simulation5/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation5/model/plasma/t_electrons series (shape->[20])
/simulation5/model/plasma/t_rad series (shape->[20])
/simulation5/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation5/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation5/model/plasma/w series (shape->[20])
/simulation5/model/plasma/wavelength_cm series (shape->[29224])
/simulation5/model/scalars series (shape->[1])
/simulation5/runner/j_estimator series (shape->[20])
/simulation5/runner/nu_bar_estimator series (shape->[20])
/simulation5/runner/output_energy series (shape->[40000])
/simulation5/runner/output_nu series (shape->[40000])
/simulation6/model/arrays frame (shape->[20,4])
/simulation6/model/metadata series (shape->[1])
/simulation6/model/plasma/abundance frame (shape->[6,20])
/simulation6/model/plasma/atomic_mass series (shape->[6])
/simulation6/model/plasma/beta_rad series (shape->[20])
/simulation6/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation6/model/plasma/density series (shape->[20])
/simulation6/model/plasma/electron_densities series (shape->[20])
/simulation6/model/plasma/excitation_energy series (shape->[4439])
/simulation6/model/plasma/f_lu series (shape->[29224])
/simulation6/model/plasma/g series (shape->[4439])
/simulation6/model/plasma/g_electron series (shape->[20])
/simulation6/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation6/model/plasma/ion_number_density frame (shape->[94,20])
/simulation6/model/plasma/ionization_data frame (shape->[88,1])
/simulation6/model/plasma/j_blues frame (shape->[29224,20])
/simulation6/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation6/model/plasma/level_number_density frame (shape->[4439,20])
/simulation6/model/plasma/levels frame (shape->[1,1])
/simulation6/model/plasma/lines frame (shape->[29224,12])
/simulation6/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation6/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation6/model/plasma/metastability series (shape->[4439])
/simulation6/model/plasma/nu series (shape->[29224])
/simulation6/model/plasma/number_density frame (shape->[6,20])
/simulation6/model/plasma/partition_function frame (shape->[94,20])
/simulation6/model/plasma/phi frame (shape->[88,20])
/simulation6/model/plasma/scalars series (shape->[2])
/simulation6/model/plasma/selected_atoms series (shape->[6])
/simulation6/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation6/model/plasma/t_electrons series (shape->[20])
/simulation6/model/plasma/t_rad series (shape->[20])
/simulation6/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation6/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation6/model/plasma/w series (shape->[20])
/simulation6/model/plasma/wavelength_cm series (shape->[29224])
/simulation6/model/scalars series (shape->[1])
/simulation6/runner/j_estimator series (shape->[20])
/simulation6/runner/nu_bar_estimator series (shape->[20])
/simulation6/runner/output_energy series (shape->[40000])
/simulation6/runner/output_nu series (shape->[40000])
/simulation7/model/arrays frame (shape->[20,4])
/simulation7/model/metadata series (shape->[1])
/simulation7/model/plasma/abundance frame (shape->[6,20])
/simulation7/model/plasma/atomic_mass series (shape->[6])
/simulation7/model/plasma/beta_rad series (shape->[20])
/simulation7/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation7/model/plasma/density series (shape->[20])
/simulation7/model/plasma/electron_densities series (shape->[20])
/simulation7/model/plasma/excitation_energy series (shape->[4439])
/simulation7/model/plasma/f_lu series (shape->[29224])
/simulation7/model/plasma/g series (shape->[4439])
/simulation7/model/plasma/g_electron series (shape->[20])
/simulation7/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation7/model/plasma/ion_number_density frame (shape->[94,20])
/simulation7/model/plasma/ionization_data frame (shape->[88,1])
/simulation7/model/plasma/j_blues frame (shape->[29224,20])
/simulation7/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation7/model/plasma/level_number_density frame (shape->[4439,20])
/simulation7/model/plasma/levels frame (shape->[1,1])
/simulation7/model/plasma/lines frame (shape->[29224,12])
/simulation7/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation7/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation7/model/plasma/metastability series (shape->[4439])
/simulation7/model/plasma/nu series (shape->[29224])
/simulation7/model/plasma/number_density frame (shape->[6,20])
/simulation7/model/plasma/partition_function frame (shape->[94,20])
/simulation7/model/plasma/phi frame (shape->[88,20])
/simulation7/model/plasma/scalars series (shape->[2])
/simulation7/model/plasma/selected_atoms series (shape->[6])
/simulation7/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation7/model/plasma/t_electrons series (shape->[20])
/simulation7/model/plasma/t_rad series (shape->[20])
/simulation7/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation7/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation7/model/plasma/w series (shape->[20])
/simulation7/model/plasma/wavelength_cm series (shape->[29224])
/simulation7/model/scalars series (shape->[1])
/simulation7/runner/j_estimator series (shape->[20])
/simulation7/runner/nu_bar_estimator series (shape->[20])
/simulation7/runner/output_energy series (shape->[40000])
/simulation7/runner/output_nu series (shape->[40000])
/simulation8/model/arrays frame (shape->[20,4])
/simulation8/model/metadata series (shape->[1])
/simulation8/model/plasma/abundance frame (shape->[6,20])
/simulation8/model/plasma/atomic_mass series (shape->[6])
/simulation8/model/plasma/beta_rad series (shape->[20])
/simulation8/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation8/model/plasma/density series (shape->[20])
/simulation8/model/plasma/electron_densities series (shape->[20])
/simulation8/model/plasma/excitation_energy series (shape->[4439])
/simulation8/model/plasma/f_lu series (shape->[29224])
/simulation8/model/plasma/g series (shape->[4439])
/simulation8/model/plasma/g_electron series (shape->[20])
/simulation8/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation8/model/plasma/ion_number_density frame (shape->[94,20])
/simulation8/model/plasma/ionization_data frame (shape->[88,1])
/simulation8/model/plasma/j_blues frame (shape->[29224,20])
/simulation8/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation8/model/plasma/level_number_density frame (shape->[4439,20])
/simulation8/model/plasma/levels frame (shape->[1,1])
/simulation8/model/plasma/lines frame (shape->[29224,12])
/simulation8/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation8/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation8/model/plasma/metastability series (shape->[4439])
/simulation8/model/plasma/nu series (shape->[29224])
/simulation8/model/plasma/number_density frame (shape->[6,20])
/simulation8/model/plasma/partition_function frame (shape->[94,20])
/simulation8/model/plasma/phi frame (shape->[88,20])
/simulation8/model/plasma/scalars series (shape->[2])
/simulation8/model/plasma/selected_atoms series (shape->[6])
/simulation8/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation8/model/plasma/t_electrons series (shape->[20])
/simulation8/model/plasma/t_rad series (shape->[20])
/simulation8/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation8/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation8/model/plasma/w series (shape->[20])
/simulation8/model/plasma/wavelength_cm series (shape->[29224])
/simulation8/model/scalars series (shape->[1])
/simulation8/runner/j_estimator series (shape->[20])
/simulation8/runner/nu_bar_estimator series (shape->[20])
/simulation8/runner/output_energy series (shape->[40000])
/simulation8/runner/output_nu series (shape->[40000])
/simulation9/model/arrays frame (shape->[20,4])
/simulation9/model/metadata series (shape->[1])
/simulation9/model/plasma/abundance frame (shape->[6,20])
/simulation9/model/plasma/atomic_mass series (shape->[6])
/simulation9/model/plasma/beta_rad series (shape->[20])
/simulation9/model/plasma/beta_sobolev frame (shape->[29224,20])
/simulation9/model/plasma/density series (shape->[20])
/simulation9/model/plasma/electron_densities series (shape->[20])
/simulation9/model/plasma/excitation_energy series (shape->[4439])
/simulation9/model/plasma/f_lu series (shape->[29224])
/simulation9/model/plasma/g series (shape->[4439])
/simulation9/model/plasma/g_electron series (shape->[20])
/simulation9/model/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/simulation9/model/plasma/ion_number_density frame (shape->[94,20])
/simulation9/model/plasma/ionization_data frame (shape->[88,1])
/simulation9/model/plasma/j_blues frame (shape->[29224,20])
/simulation9/model/plasma/level_boltzmann_factor frame (shape->[4439,20])
/simulation9/model/plasma/level_number_density frame (shape->[4439,20])
/simulation9/model/plasma/levels frame (shape->[1,1])
/simulation9/model/plasma/lines frame (shape->[29224,12])
/simulation9/model/plasma/lines_lower_level_index series (shape->[29224])
/simulation9/model/plasma/lines_upper_level_index series (shape->[29224])
/simulation9/model/plasma/metastability series (shape->[4439])
/simulation9/model/plasma/nu series (shape->[29224])
/simulation9/model/plasma/number_density frame (shape->[6,20])
/simulation9/model/plasma/partition_function frame (shape->[94,20])
/simulation9/model/plasma/phi frame (shape->[88,20])
/simulation9/model/plasma/scalars series (shape->[2])
/simulation9/model/plasma/selected_atoms series (shape->[6])
/simulation9/model/plasma/stimulated_emission_factor frame (shape->[29224,20])
/simulation9/model/plasma/t_electrons series (shape->[20])
/simulation9/model/plasma/t_rad series (shape->[20])
/simulation9/model/plasma/tau_sobolevs frame (shape->[29224,20])
/simulation9/model/plasma/transition_probabilities frame (shape->[87672,20])
/simulation9/model/plasma/w series (shape->[20])
/simulation9/model/plasma/wavelength_cm series (shape->[29224])
/simulation9/model/scalars series (shape->[1])
/simulation9/runner/j_estimator series (shape->[20])
/simulation9/runner/nu_bar_estimator series (shape->[20])
/simulation9/runner/output_energy series (shape->[40000])
/simulation9/runner/output_nu series (shape->[40000])
Access model.plasma.density of the 9th simulation, which is a one-dimensional array
In [7]:
print data['/simulation9/model/plasma/density']
0 7.542804e-14
1 5.728475e-14
2 4.396074e-14
3 3.406287e-14
4 2.663135e-14
5 2.099596e-14
6 1.668287e-14
7 1.335311e-14
8 1.076154e-14
9 8.729085e-15
10 7.123652e-15
11 5.846921e-15
12 4.825093e-15
13 4.002324e-15
14 3.336039e-15
15 2.793540e-15
16 2.349550e-15
17 1.984397e-15
18 1.682677e-15
19 1.432260e-15
dtype: float64
Scalars are stored in a scalars pandas.Series for every module. For example to access model.t_inner of the 9th iteration of the simulation, one would need to do the following.
Note: Quantities are always stored as their SI values.
In [9]:
print data['/simulation9/model/scalars']['t_inner']
11257.7713721
In [3]:
model.plasma.to_hdf('/tmp/plasma_output.hdf', path='parent')
py.warnings - WARNING - /home/ftsamis/anaconda2/envs/tardis/lib/python2.7/site-packages/pandas/io/pytables.py:2577: PerformanceWarning:
your performance may suffer as PyTables will pickle object types that it cannot
map directly to c-types [inferred_type->mixed,key->block0_values] [items->[0]]
warnings.warn(ws, PerformanceWarning)
In [4]:
import pandas
with pandas.HDFStore('/tmp/plasma_output.hdf') as data:
print data
<class 'pandas.io.pytables.HDFStore'>
File path: /tmp/plasma_output.hdf
/parent/plasma/abundance frame (shape->[6,20])
/parent/plasma/atomic_mass series (shape->[6])
/parent/plasma/beta_rad series (shape->[20])
/parent/plasma/beta_sobolev frame (shape->[29224,20])
/parent/plasma/density series (shape->[20])
/parent/plasma/electron_densities series (shape->[20])
/parent/plasma/excitation_energy series (shape->[4439])
/parent/plasma/f_lu series (shape->[29224])
/parent/plasma/g series (shape->[4439])
/parent/plasma/g_electron series (shape->[20])
/parent/plasma/general_level_boltzmann_factor frame (shape->[4439,20])
/parent/plasma/ion_number_density frame (shape->[94,20])
/parent/plasma/ionization_data frame (shape->[88,1])
/parent/plasma/j_blues frame (shape->[29224,20])
/parent/plasma/level_boltzmann_factor frame (shape->[4439,20])
/parent/plasma/level_number_density frame (shape->[4439,20])
/parent/plasma/levels frame (shape->[1,1])
/parent/plasma/lines frame (shape->[29224,12])
/parent/plasma/lines_lower_level_index series (shape->[29224])
/parent/plasma/lines_upper_level_index series (shape->[29224])
/parent/plasma/metastability series (shape->[4439])
/parent/plasma/nu series (shape->[29224])
/parent/plasma/number_density frame (shape->[6,20])
/parent/plasma/partition_function frame (shape->[94,20])
/parent/plasma/phi frame (shape->[88,20])
/parent/plasma/scalars series (shape->[2])
/parent/plasma/selected_atoms series (shape->[6])
/parent/plasma/stimulated_emission_factor frame (shape->[29224,20])
/parent/plasma/t_electrons series (shape->[20])
/parent/plasma/t_rad series (shape->[20])
/parent/plasma/tau_sobolevs frame (shape->[29224,20])
/parent/plasma/transition_probabilities frame (shape->[87672,20])
/parent/plasma/w series (shape->[20])
/parent/plasma/wavelength_cm series (shape->[29224])
Plasma's to_hdf method can also accept a collection parameter which can specify which types of plasma properties will be stored. For example if we wanted to only store Input plasma properties, we would do the following:
In [11]:
from tardis.plasma.properties.base import Input
model.plasma.to_hdf('/tmp/plasma_input_output.hdf', collection=[Input])
In [12]:
import pandas
with pandas.HDFStore('/tmp/plasma_input_output.hdf') as data:
print data
<class 'pandas.io.pytables.HDFStore'>
File path: /tmp/plasma_input_output.hdf
/plasma/abundance frame (shape->[6,20])
/plasma/density series (shape->[20])
/plasma/j_blues frame (shape->[29224,20])
/plasma/scalars series (shape->[2])
/plasma/t_rad series (shape->[20])
/plasma/w series (shape->[20])
In [ ]:
model.to_hdf('/tmp/model_output.hdf')
In [7]:
simulation.runner.to_hdf('/tmp/runner_output.hdf')
In [8]:
import pandas
with pandas.HDFStore('/tmp/runner_output.hdf') as data:
print data
<class 'pandas.io.pytables.HDFStore'>
File path: /tmp/runner_output.hdf
/runner/j_estimator series (shape->[20])
/runner/nu_bar_estimator series (shape->[20])
/runner/output_energy series (shape->[100000])
/runner/output_nu series (shape->[100000])
Content source: orbitfold/tardis
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