# Dionysus and Topological Data in Python

A basic, fast-paced, and hopefully understandable introduction to ideas and applications of topological data analysis (TDA) using Dionysus in Python.

## Introduction

Topological Data Analysis main points, extremely informally:

• Topology is classes of surfaces continuously deformable into each other.
• Surface is infinitely stretchy and compressible, but no ripping of the surface allowed.
• Topological data is a discretization of ideas from topology.
• Data has shape, and shape has meaning.
• Difficult to understand high-dimensional (>3) space.

Famously, "the coffee cup is topologically equivalent to a donut".

Think of rescaling features as a deformation

``````

In [38]:

import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D

# Local companion package
from topology.data import coffee_mug
from topology.data import pail
from topology.plotting import plot_mug_3D
from topology.plotting import plot_pail_3D
from topology.plotting import plot_circle_2D

%matplotlib notebook

``````
``````

In [1]:

from IPython.display import Image
from IPython.display import display
#https://en.wikipedia.org/wiki/File:Mug_and_Torus_morph.gif
display(Image(url="images/Mug_and_Torus_morph.gif"))

``````
``````

``````

Dionysus is a package for analyzing the topology (think holes, circles, handles, and the higher dimensional analogues) of data.

• PRO: It's one of the few TDA options out there.
• PRO: Accessible through python bindings.
• CON: Not very well documented.
• CON: Not completely accessible through Python.
• CON: Code is difficult to read and navigate. (Especially C++ code for non-specialists).

It uses "persistent homology":

• Connect points at each length scale from a range of scales.
• Persistence: Feature stays over many length scales -- more important.

## By Example

``````

In [39]:

plot_circle_2D()

``````
``````

var element = \$('#6822dc4d-1aa0-40c0-8ede-2f03279239c1');
/* Put everything inside the global mpl namespace */
window.mpl = {};

mpl.get_websocket_type = function() {
if (typeof(WebSocket) !== 'undefined') {
return WebSocket;
} else if (typeof(MozWebSocket) !== 'undefined') {
return MozWebSocket;
} else {
'Please try Chrome, Safari or Firefox ≥ 6. ' +
'Firefox 4 and 5 are also supported but you ' +
'have to enable WebSockets in about:config.');
};
}

this.id = figure_id;

this.ws = websocket;

this.supports_binary = (this.ws.binaryType != undefined);

if (!this.supports_binary) {
var warnings = document.getElementById("mpl-warnings");
if (warnings) {
warnings.style.display = 'block';
warnings.textContent = (
"This browser does not support binary websocket messages. " +
"Performance may be slow.");
}
}

this.imageObj = new Image();

this.context = undefined;
this.message = undefined;
this.canvas = undefined;
this.rubberband_canvas = undefined;
this.rubberband_context = undefined;
this.format_dropdown = undefined;

this.image_mode = 'full';

this.root = \$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

\$(parent_element).append(this.root);

this._init_canvas(this);
this._init_toolbar(this);

var fig = this;

this.waiting = false;

this.ws.onopen =  function () {
fig.send_message("supports_binary", {value: fig.supports_binary});
fig.send_message("send_image_mode", {});
fig.send_message("refresh", {});
}

if (fig.image_mode == 'full') {
// Full images could contain transparency (where diff images
// almost always do), so we need to clear the canvas so that
// there is no ghosting.
fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);
}
fig.context.drawImage(fig.imageObj, 0, 0);
};

this.ws.close();
}

this.ws.onmessage = this._make_on_message_function(this);

}

var titlebar = \$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = \$(
'<div class="ui-dialog-title" style="width: 100%; ' +
titlebar.append(titletext)
this.root.append(titlebar);
}

mpl.figure.prototype._canvas_extra_style = function(canvas_div) {

}

mpl.figure.prototype._root_extra_style = function(canvas_div) {

}

mpl.figure.prototype._init_canvas = function() {
var fig = this;

var canvas_div = \$('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = \$('<canvas/>');
canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0")

this.canvas = canvas[0];
this.context = canvas[0].getContext("2d");

var rubberband = \$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
return false;
});

function set_focus () {
canvas.focus();
canvas_div.focus();
}

window.setTimeout(set_focus, 100);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = \$('<button/>');
button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' +
'ui-button-icon-only');
button.attr('role', 'button');
button.attr('aria-disabled', 'false');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);

var icon_img = \$('<span/>');

var tooltip_span = \$('<span/>');
tooltip_span.html(tooltip);

button.append(icon_img);
button.append(tooltip_span);

nav_element.append(button);
}

var fmt_picker_span = \$('<span/>');

var fmt_picker = \$('<select/>');
fmt_picker_span.append(fmt_picker);
nav_element.append(fmt_picker_span);
this.format_dropdown = fmt_picker[0];

for (var ind in mpl.extensions) {
var fmt = mpl.extensions[ind];
var option = \$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
\$( ".ui-button" ).hover(
function() { \$(this).removeClass("ui-state-hover");}
);

var status_bar = \$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - \$(targ).offset().left;
var y = e.pageY - \$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "pdf", "png", "ps", "raw", "svg"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = \$("#" + id);

window.open(figure.imageObj.src);
}

var fig = new mpl.figure(id, ws_proxy,
element.get(0));

// Call onopen now - mpl needs it, as it is assuming we've passed it a real
// web socket which is closed, not our websocket->open comm proxy.
ws_proxy.onopen();

fig.parent_element = element.get(0);
fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>");
if (!fig.cell_info) {
console.error("Failed to find cell for figure", id, fig);
return;
}

var output_index = fig.cell_info[2]
var cell = fig.cell_info[0];

};

mpl.figure.prototype.handle_close = function(fig, msg) {
fig.root.unbind('remove')

// Update the output cell to use the data from the current canvas.
fig.push_to_output();
var dataURL = fig.canvas.toDataURL();
// Re-enable the keyboard manager in IPython - without this line, in FF,
// the notebook keyboard shortcuts fail.
IPython.keyboard_manager.enable()
\$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items){
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) { continue; };

var button = \$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = \$('<span class="mpl-message" style="text-align:right; float: right;"/>');
nav_element.append(status_bar);
this.message = status_bar[0];

// Add the close button to the window.
var buttongrp = \$('<div class="btn-group inline pull-right"></div>');
var button = \$('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>');
button.click(function (evt) { fig.handle_close(fig, {}); } );
button.mouseover('Stop Interaction', toolbar_mouse_event);
buttongrp.append(button);
var titlebar = this.root.find(\$('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}

Out[39]:

<matplotlib.axes._subplots.AxesSubplot at 0x125101850>

``````
``````

In [ ]:

``````
``````

In [35]:

plot_mug_3D()
plot_pail_3D()

``````
``````

var element = \$('#a594b4a8-1163-47ac-bb66-bdaa7a497eef');
/* Put everything inside the global mpl namespace */
window.mpl = {};

mpl.get_websocket_type = function() {
if (typeof(WebSocket) !== 'undefined') {
return WebSocket;
} else if (typeof(MozWebSocket) !== 'undefined') {
return MozWebSocket;
} else {
'Please try Chrome, Safari or Firefox ≥ 6. ' +
'Firefox 4 and 5 are also supported but you ' +
'have to enable WebSockets in about:config.');
};
}

this.id = figure_id;

this.ws = websocket;

this.supports_binary = (this.ws.binaryType != undefined);

if (!this.supports_binary) {
var warnings = document.getElementById("mpl-warnings");
if (warnings) {
warnings.style.display = 'block';
warnings.textContent = (
"This browser does not support binary websocket messages. " +
"Performance may be slow.");
}
}

this.imageObj = new Image();

this.context = undefined;
this.message = undefined;
this.canvas = undefined;
this.rubberband_canvas = undefined;
this.rubberband_context = undefined;
this.format_dropdown = undefined;

this.image_mode = 'full';

this.root = \$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

\$(parent_element).append(this.root);

this._init_canvas(this);
this._init_toolbar(this);

var fig = this;

this.waiting = false;

this.ws.onopen =  function () {
fig.send_message("supports_binary", {value: fig.supports_binary});
fig.send_message("send_image_mode", {});
fig.send_message("refresh", {});
}

if (fig.image_mode == 'full') {
// Full images could contain transparency (where diff images
// almost always do), so we need to clear the canvas so that
// there is no ghosting.
fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);
}
fig.context.drawImage(fig.imageObj, 0, 0);
};

this.ws.close();
}

this.ws.onmessage = this._make_on_message_function(this);

}

var titlebar = \$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = \$(
'<div class="ui-dialog-title" style="width: 100%; ' +
titlebar.append(titletext)
this.root.append(titlebar);
}

mpl.figure.prototype._canvas_extra_style = function(canvas_div) {

}

mpl.figure.prototype._root_extra_style = function(canvas_div) {

}

mpl.figure.prototype._init_canvas = function() {
var fig = this;

var canvas_div = \$('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = \$('<canvas/>');
canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0")

this.canvas = canvas[0];
this.context = canvas[0].getContext("2d");

var rubberband = \$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
return false;
});

function set_focus () {
canvas.focus();
canvas_div.focus();
}

window.setTimeout(set_focus, 100);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = \$('<button/>');
button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' +
'ui-button-icon-only');
button.attr('role', 'button');
button.attr('aria-disabled', 'false');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);

var icon_img = \$('<span/>');

var tooltip_span = \$('<span/>');
tooltip_span.html(tooltip);

button.append(icon_img);
button.append(tooltip_span);

nav_element.append(button);
}

var fmt_picker_span = \$('<span/>');

var fmt_picker = \$('<select/>');
fmt_picker_span.append(fmt_picker);
nav_element.append(fmt_picker_span);
this.format_dropdown = fmt_picker[0];

for (var ind in mpl.extensions) {
var fmt = mpl.extensions[ind];
var option = \$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
\$( ".ui-button" ).hover(
function() { \$(this).removeClass("ui-state-hover");}
);

var status_bar = \$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - \$(targ).offset().left;
var y = e.pageY - \$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "pdf", "png", "ps", "raw", "svg"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = \$("#" + id);

window.open(figure.imageObj.src);
}

var fig = new mpl.figure(id, ws_proxy,
element.get(0));

// Call onopen now - mpl needs it, as it is assuming we've passed it a real
// web socket which is closed, not our websocket->open comm proxy.
ws_proxy.onopen();

fig.parent_element = element.get(0);
fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>");
if (!fig.cell_info) {
console.error("Failed to find cell for figure", id, fig);
return;
}

var output_index = fig.cell_info[2]
var cell = fig.cell_info[0];

};

mpl.figure.prototype.handle_close = function(fig, msg) {
fig.root.unbind('remove')

// Update the output cell to use the data from the current canvas.
fig.push_to_output();
var dataURL = fig.canvas.toDataURL();
// Re-enable the keyboard manager in IPython - without this line, in FF,
// the notebook keyboard shortcuts fail.
IPython.keyboard_manager.enable()
\$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items){
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) { continue; };

var button = \$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = \$('<span class="mpl-message" style="text-align:right; float: right;"/>');
nav_element.append(status_bar);
this.message = status_bar[0];

// Add the close button to the window.
var buttongrp = \$('<div class="btn-group inline pull-right"></div>');
var button = \$('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>');
button.click(function (evt) { fig.handle_close(fig, {}); } );
button.mouseover('Stop Interaction', toolbar_mouse_event);
buttongrp.append(button);
var titlebar = this.root.find(\$('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}

var element = \$('#86dd8572-db0e-4c1d-84f1-ef4eaed64601');
/* Put everything inside the global mpl namespace */
window.mpl = {};

mpl.get_websocket_type = function() {
if (typeof(WebSocket) !== 'undefined') {
return WebSocket;
} else if (typeof(MozWebSocket) !== 'undefined') {
return MozWebSocket;
} else {
'Please try Chrome, Safari or Firefox ≥ 6. ' +
'Firefox 4 and 5 are also supported but you ' +
'have to enable WebSockets in about:config.');
};
}

this.id = figure_id;

this.ws = websocket;

this.supports_binary = (this.ws.binaryType != undefined);

if (!this.supports_binary) {
var warnings = document.getElementById("mpl-warnings");
if (warnings) {
warnings.style.display = 'block';
warnings.textContent = (
"This browser does not support binary websocket messages. " +
"Performance may be slow.");
}
}

this.imageObj = new Image();

this.context = undefined;
this.message = undefined;
this.canvas = undefined;
this.rubberband_canvas = undefined;
this.rubberband_context = undefined;
this.format_dropdown = undefined;

this.image_mode = 'full';

this.root = \$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

\$(parent_element).append(this.root);

this._init_canvas(this);
this._init_toolbar(this);

var fig = this;

this.waiting = false;

this.ws.onopen =  function () {
fig.send_message("supports_binary", {value: fig.supports_binary});
fig.send_message("send_image_mode", {});
fig.send_message("refresh", {});
}

if (fig.image_mode == 'full') {
// Full images could contain transparency (where diff images
// almost always do), so we need to clear the canvas so that
// there is no ghosting.
fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);
}
fig.context.drawImage(fig.imageObj, 0, 0);
};

this.ws.close();
}

this.ws.onmessage = this._make_on_message_function(this);

}

var titlebar = \$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = \$(
'<div class="ui-dialog-title" style="width: 100%; ' +
titlebar.append(titletext)
this.root.append(titlebar);
}

mpl.figure.prototype._canvas_extra_style = function(canvas_div) {

}

mpl.figure.prototype._root_extra_style = function(canvas_div) {

}

mpl.figure.prototype._init_canvas = function() {
var fig = this;

var canvas_div = \$('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = \$('<canvas/>');
canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0")

this.canvas = canvas[0];
this.context = canvas[0].getContext("2d");

var rubberband = \$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
return false;
});

function set_focus () {
canvas.focus();
canvas_div.focus();
}

window.setTimeout(set_focus, 100);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = \$('<button/>');
button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' +
'ui-button-icon-only');
button.attr('role', 'button');
button.attr('aria-disabled', 'false');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);

var icon_img = \$('<span/>');

var tooltip_span = \$('<span/>');
tooltip_span.html(tooltip);

button.append(icon_img);
button.append(tooltip_span);

nav_element.append(button);
}

var fmt_picker_span = \$('<span/>');

var fmt_picker = \$('<select/>');
fmt_picker_span.append(fmt_picker);
nav_element.append(fmt_picker_span);
this.format_dropdown = fmt_picker[0];

for (var ind in mpl.extensions) {
var fmt = mpl.extensions[ind];
var option = \$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
\$( ".ui-button" ).hover(
function() { \$(this).removeClass("ui-state-hover");}
);

var status_bar = \$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - \$(targ).offset().left;
var y = e.pageY - \$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "pdf", "png", "ps", "raw", "svg"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = \$("#" + id);

window.open(figure.imageObj.src);
}

var fig = new mpl.figure(id, ws_proxy,
element.get(0));

// Call onopen now - mpl needs it, as it is assuming we've passed it a real
// web socket which is closed, not our websocket->open comm proxy.
ws_proxy.onopen();

fig.parent_element = element.get(0);
fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>");
if (!fig.cell_info) {
console.error("Failed to find cell for figure", id, fig);
return;
}

var output_index = fig.cell_info[2]
var cell = fig.cell_info[0];

};

mpl.figure.prototype.handle_close = function(fig, msg) {
fig.root.unbind('remove')

// Update the output cell to use the data from the current canvas.
fig.push_to_output();
var dataURL = fig.canvas.toDataURL();
// Re-enable the keyboard manager in IPython - without this line, in FF,
// the notebook keyboard shortcuts fail.
IPython.keyboard_manager.enable()
\$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items){
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) { continue; };

var button = \$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = \$('<span class="mpl-message" style="text-align:right; float: right;"/>');
nav_element.append(status_bar);
this.message = status_bar[0];

// Add the close button to the window.
var buttongrp = \$('<div class="btn-group inline pull-right"></div>');
var button = \$('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>');
button.click(function (evt) { fig.handle_close(fig, {}); } );
button.mouseover('Stop Interaction', toolbar_mouse_event);
buttongrp.append(button);
var titlebar = this.root.find(\$('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}

Out[35]:

<matplotlib.axes._subplots.Axes3DSubplot at 0x1248f5bd0>

``````

## Dimensional reduction

Many dimensional reduction methods will obscure the topological nature of your data. Here is an example of where PCA does a good job of keeping some of the character of a coffee mug, but doesn't do well with a bucket.

``````

In [8]:

%run pca_demo.py

``````
``````

var element = \$('#634e26be-90c8-4e95-936d-f7c8ac140f53');
/* Put everything inside the global mpl namespace */
window.mpl = {};

mpl.get_websocket_type = function() {
if (typeof(WebSocket) !== 'undefined') {
return WebSocket;
} else if (typeof(MozWebSocket) !== 'undefined') {
return MozWebSocket;
} else {
'Please try Chrome, Safari or Firefox ≥ 6. ' +
'Firefox 4 and 5 are also supported but you ' +
'have to enable WebSockets in about:config.');
};
}

this.id = figure_id;

this.ws = websocket;

this.supports_binary = (this.ws.binaryType != undefined);

if (!this.supports_binary) {
var warnings = document.getElementById("mpl-warnings");
if (warnings) {
warnings.style.display = 'block';
warnings.textContent = (
"This browser does not support binary websocket messages. " +
"Performance may be slow.");
}
}

this.imageObj = new Image();

this.context = undefined;
this.message = undefined;
this.canvas = undefined;
this.rubberband_canvas = undefined;
this.rubberband_context = undefined;
this.format_dropdown = undefined;

this.image_mode = 'full';

this.root = \$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

\$(parent_element).append(this.root);

this._init_canvas(this);
this._init_toolbar(this);

var fig = this;

this.waiting = false;

this.ws.onopen =  function () {
fig.send_message("supports_binary", {value: fig.supports_binary});
fig.send_message("send_image_mode", {});
fig.send_message("refresh", {});
}

if (fig.image_mode == 'full') {
// Full images could contain transparency (where diff images
// almost always do), so we need to clear the canvas so that
// there is no ghosting.
fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);
}
fig.context.drawImage(fig.imageObj, 0, 0);
};

this.ws.close();
}

this.ws.onmessage = this._make_on_message_function(this);

}

var titlebar = \$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = \$(
'<div class="ui-dialog-title" style="width: 100%; ' +
titlebar.append(titletext)
this.root.append(titlebar);
}

mpl.figure.prototype._canvas_extra_style = function(canvas_div) {

}

mpl.figure.prototype._root_extra_style = function(canvas_div) {

}

mpl.figure.prototype._init_canvas = function() {
var fig = this;

var canvas_div = \$('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = \$('<canvas/>');
canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0")

this.canvas = canvas[0];
this.context = canvas[0].getContext("2d");

var rubberband = \$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
return false;
});

function set_focus () {
canvas.focus();
canvas_div.focus();
}

window.setTimeout(set_focus, 100);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = \$('<button/>');
button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' +
'ui-button-icon-only');
button.attr('role', 'button');
button.attr('aria-disabled', 'false');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);

var icon_img = \$('<span/>');

var tooltip_span = \$('<span/>');
tooltip_span.html(tooltip);

button.append(icon_img);
button.append(tooltip_span);

nav_element.append(button);
}

var fmt_picker_span = \$('<span/>');

var fmt_picker = \$('<select/>');
fmt_picker_span.append(fmt_picker);
nav_element.append(fmt_picker_span);
this.format_dropdown = fmt_picker[0];

for (var ind in mpl.extensions) {
var fmt = mpl.extensions[ind];
var option = \$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
\$( ".ui-button" ).hover(
function() { \$(this).removeClass("ui-state-hover");}
);

var status_bar = \$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - \$(targ).offset().left;
var y = e.pageY - \$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "pdf", "png", "ps", "raw", "svg"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = \$("#" + id);

window.open(figure.imageObj.src);
}

var fig = new mpl.figure(id, ws_proxy,
element.get(0));

// Call onopen now - mpl needs it, as it is assuming we've passed it a real
// web socket which is closed, not our websocket->open comm proxy.
ws_proxy.onopen();

fig.parent_element = element.get(0);
fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>");
if (!fig.cell_info) {
console.error("Failed to find cell for figure", id, fig);
return;
}

var output_index = fig.cell_info[2]
var cell = fig.cell_info[0];

};

mpl.figure.prototype.handle_close = function(fig, msg) {
fig.root.unbind('remove')

// Update the output cell to use the data from the current canvas.
fig.push_to_output();
var dataURL = fig.canvas.toDataURL();
// Re-enable the keyboard manager in IPython - without this line, in FF,
// the notebook keyboard shortcuts fail.
IPython.keyboard_manager.enable()
\$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items){
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) { continue; };

var button = \$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = \$('<span class="mpl-message" style="text-align:right; float: right;"/>');
nav_element.append(status_bar);
this.message = status_bar[0];

// Add the close button to the window.
var buttongrp = \$('<div class="btn-group inline pull-right"></div>');
var button = \$('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>');
button.click(function (evt) { fig.handle_close(fig, {}); } );
button.mouseover('Stop Interaction', toolbar_mouse_event);
buttongrp.append(button);
var titlebar = this.root.find(\$('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}

var element = \$('#1eff3827-85dd-4962-bc8f-fcbb6cefc2c4');
/* Put everything inside the global mpl namespace */
window.mpl = {};

mpl.get_websocket_type = function() {
if (typeof(WebSocket) !== 'undefined') {
return WebSocket;
} else if (typeof(MozWebSocket) !== 'undefined') {
return MozWebSocket;
} else {
'Please try Chrome, Safari or Firefox ≥ 6. ' +
'Firefox 4 and 5 are also supported but you ' +
'have to enable WebSockets in about:config.');
};
}

this.id = figure_id;

this.ws = websocket;

this.supports_binary = (this.ws.binaryType != undefined);

if (!this.supports_binary) {
var warnings = document.getElementById("mpl-warnings");
if (warnings) {
warnings.style.display = 'block';
warnings.textContent = (
"This browser does not support binary websocket messages. " +
"Performance may be slow.");
}
}

this.imageObj = new Image();

this.context = undefined;
this.message = undefined;
this.canvas = undefined;
this.rubberband_canvas = undefined;
this.rubberband_context = undefined;
this.format_dropdown = undefined;

this.image_mode = 'full';

this.root = \$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

\$(parent_element).append(this.root);

this._init_canvas(this);
this._init_toolbar(this);

var fig = this;

this.waiting = false;

this.ws.onopen =  function () {
fig.send_message("supports_binary", {value: fig.supports_binary});
fig.send_message("send_image_mode", {});
fig.send_message("refresh", {});
}

if (fig.image_mode == 'full') {
// Full images could contain transparency (where diff images
// almost always do), so we need to clear the canvas so that
// there is no ghosting.
fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);
}
fig.context.drawImage(fig.imageObj, 0, 0);
};

this.ws.close();
}

this.ws.onmessage = this._make_on_message_function(this);

}

var titlebar = \$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = \$(
'<div class="ui-dialog-title" style="width: 100%; ' +
titlebar.append(titletext)
this.root.append(titlebar);
}

mpl.figure.prototype._canvas_extra_style = function(canvas_div) {

}

mpl.figure.prototype._root_extra_style = function(canvas_div) {

}

mpl.figure.prototype._init_canvas = function() {
var fig = this;

var canvas_div = \$('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = \$('<canvas/>');
canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0")

this.canvas = canvas[0];
this.context = canvas[0].getContext("2d");

var rubberband = \$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
return false;
});

function set_focus () {
canvas.focus();
canvas_div.focus();
}

window.setTimeout(set_focus, 100);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = \$('<button/>');
button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' +
'ui-button-icon-only');
button.attr('role', 'button');
button.attr('aria-disabled', 'false');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);

var icon_img = \$('<span/>');

var tooltip_span = \$('<span/>');
tooltip_span.html(tooltip);

button.append(icon_img);
button.append(tooltip_span);

nav_element.append(button);
}

var fmt_picker_span = \$('<span/>');

var fmt_picker = \$('<select/>');
fmt_picker_span.append(fmt_picker);
nav_element.append(fmt_picker_span);
this.format_dropdown = fmt_picker[0];

for (var ind in mpl.extensions) {
var fmt = mpl.extensions[ind];
var option = \$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
\$( ".ui-button" ).hover(
function() { \$(this).removeClass("ui-state-hover");}
);

var status_bar = \$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - \$(targ).offset().left;
var y = e.pageY - \$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "pdf", "png", "ps", "raw", "svg"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = \$("#" + id);

window.open(figure.imageObj.src);
}

var fig = new mpl.figure(id, ws_proxy,
element.get(0));

// Call onopen now - mpl needs it, as it is assuming we've passed it a real
// web socket which is closed, not our websocket->open comm proxy.
ws_proxy.onopen();

fig.parent_element = element.get(0);
fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>");
if (!fig.cell_info) {
console.error("Failed to find cell for figure", id, fig);
return;
}

var output_index = fig.cell_info[2]
var cell = fig.cell_info[0];

};

mpl.figure.prototype.handle_close = function(fig, msg) {
fig.root.unbind('remove')

// Update the output cell to use the data from the current canvas.
fig.push_to_output();
var dataURL = fig.canvas.toDataURL();
// Re-enable the keyboard manager in IPython - without this line, in FF,
// the notebook keyboard shortcuts fail.
IPython.keyboard_manager.enable()
\$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = \$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items){
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) { continue; };

var button = \$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = \$('<span class="mpl-message" style="text-align:right; float: right;"/>');
nav_element.append(status_bar);
this.message = status_bar[0];

// Add the close button to the window.
var buttongrp = \$('<div class="btn-group inline pull-right"></div>');
var button = \$('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>');
button.click(function (evt) { fig.handle_close(fig, {}); } );
button.mouseover('Stop Interaction', toolbar_mouse_event);
buttongrp.append(button);
var titlebar = this.root.find(\$('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}

``````
``````

In [1]:

%run d_explore.py

``````
``````

/Users/dylan/anaconda/envs/gp27/lib/python2.7/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment.
warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.')
/Users/dylan/Documents/programming/me/python/tda/Dionysus/build/bindings/python/dionysus/__init__.py:1: RuntimeWarning: to-Python converter for boost::shared_ptr<PersistenceDiagram<boost::python::api::object> > already registered; second conversion method ignored.
from    _dionysus   import *

Distances Pairwise: time 3.19480895996e-05s
Distances Explicit: time 0.00259494781494s
Rips generate: time 0.0278868675232s
Filtration sort: time 0.148832082748s
Static persistence pairing simplices: time 0.00386214256287s
Dynamic persistence pairing simplices: time 0.0202660560608s
Simplex mapping: time 5.00679016113e-06s
[<31>, <0>]
[<32>, <0>]

``````
``````

In [ ]:

``````