In [48]:

    

workDir = '/home/nick/notebook/SIPSim/dev/bac_genome_all/'
SIPSimExe = '/home/nick/notebook/SIPSim/SIPSim'
genomeDir = '/var/seq_data/ncbi_db/genome/'


    

In [32]:

    

import os,sys
import numpy as np
import pandas as pd
from ggplot import *
import matplotlib.pyplot as plt


    

In [10]:

    

%load_ext rpy2.ipython
%matplotlib inline


    

    




The rpy2.ipython extension is already loaded. To reload it, use:
  %reload_ext rpy2.ipython

In [247]:

    

%%R
library(ggplot2)
library(dplyr)
library(tidyr)
library(gridExtra)


    

    






Need help? Try the ggplot2 mailing list: http://groups.google.com/group/ggplot2.

Attaching package: ‘dplyr’

The following object is masked from ‘package:stats’:

    filter

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

Loading required package: grid

In [20]:

    

if not os.path.isdir(workDir):
    os.mkdir(workDir)


    

In [21]:

    

genomeDir = os.path.join(workDir, 'genomes')
if not os.path.isdir(genomeDir):
    os.mkdir(genomeDir)


    

In [178]:

    

# using 'prokaryote.txt' file from the NCBI genome ftp site
!cd $genomeDir; \
    wget ftp://ftp.ncbi.nih.gov/genomes/GENOME_REPORTS/prokaryotes.txt


    

    




--2015-02-26 14:51:50--  ftp://ftp.ncbi.nih.gov/genomes/GENOME_REPORTS/prokaryotes.txt
           => `prokaryotes.txt'
Resolving ftp.ncbi.nih.gov (ftp.ncbi.nih.gov)... 130.14.250.13, 2607:f220:41e:250::10
Connecting to ftp.ncbi.nih.gov (ftp.ncbi.nih.gov)|130.14.250.13|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /genomes/GENOME_REPORTS ... done.
==> SIZE prokaryotes.txt ... 7665180
==> PASV ... done.    ==> RETR prokaryotes.txt ... done.
Length: 7665180 (7.3M) (unauthoritative)

100%[======================================>] 7,665,180   16.6M/s   in 0.4s    

2015-02-26 14:51:51 (16.6 MB/s) - `prokaryotes.txt' saved [7665180]

In [179]:

    

! printf "Number of lines in old (delta-GC dataset) version of prokaryotes.txt: "
! cd $genomeDir; \
    wc -l archive/deltaGC_dataset/prokaryotes.txt | perl -pe 's/ .+//'
! printf "Number of lines in new version of prokaryotes.txt: "
! cd $genomeDir; \
    wc -l prokaryotes.txt | perl -pe 's/ .+//'


    

    




Number of lines in old (delta-GC dataset) version of prokaryotes.txt: 23504
Number of lines in new version of prokaryotes.txt: 31639

In [181]:

    

os.chdir(genomeDir)

# loading table
proks = pd.read_csv('prokaryotes.txt', sep='\t')
print "Number of rows in full table: {}".format(proks.shape[0])

# filtering table
## just closed genomes (1 scaffold per chromosome)
### *Complete* in 'Status' field
proks = proks.loc[proks['Status'].isin(['Complete','Complete Genome'])]
print "Number of rows with a complete genome entry: {}".format(proks.shape[0])


    

    




Number of rows in full table: 31638
Number of rows with a complete genome entry: 3612

In [188]:

    

!cd $genomeDir; \
    seqDB_tools NCBIprokaryoteTableFilter \
    -t 30 prokaryotes.txt \
    > prokaryotes_filt.txt 2> NCBIprokaryoteTableFilter.log


    

In [189]:

    

!printf "Number of rows in filtered prokaryote table: "
!cd $genomeDir; wc -l prokaryotes_filt.txt | perl -pe 's/ .+//'


    

    




Number of rows in filtered prokaryote table: 3320

In [190]:

    

!wc -l NCBIprokaryoteTableFilter.log
!cd $genomeDir; \
    head -n 50 NCBIprokaryoteTableFilter.log


    

    




47 NCBIprokaryoteTableFilter.log
Loading table...
Just keeping most recent entries for same organism...
Adding taxonomy to each entry...

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Can't query website: 500 Can't connect to eutils.ncbi.nlm.nih.gov:80 (Connection timed out)
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl/5.14.2/Bio/Root/Root.pm:449
STACK: Bio::DB::Taxonomy::entrez::_run_query /usr/local/share/perl/5.14.2/Bio/DB/Taxonomy/entrez.pm:658
STACK: Bio::DB::Taxonomy::entrez::get_taxon /usr/local/share/perl/5.14.2/Bio/DB/Taxonomy/entrez.pm:326
STACK: main::get_lineage /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:305
STACK: main::add_taxonomy /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:289
STACK: /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:176
-----------------------------------------------------------

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Can't query website: 500 Can't connect to eutils.ncbi.nlm.nih.gov:80 (Connection timed out)
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl/5.14.2/Bio/Root/Root.pm:449
STACK: Bio::DB::Taxonomy::entrez::_run_query /usr/local/share/perl/5.14.2/Bio/DB/Taxonomy/entrez.pm:658
STACK: Bio::DB::Taxonomy::entrez::get_taxon /usr/local/share/perl/5.14.2/Bio/DB/Taxonomy/entrez.pm:326
STACK: main::get_lineage /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:305
STACK: main::add_taxonomy /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:289
STACK: /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:176
-----------------------------------------------------------

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Can't query website: 500 Can't connect to eutils.ncbi.nlm.nih.gov:80 (Connection timed out)
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl/5.14.2/Bio/Root/Root.pm:449
STACK: Bio::DB::Taxonomy::entrez::_run_query /usr/local/share/perl/5.14.2/Bio/DB/Taxonomy/entrez.pm:658
STACK: Bio::DB::Taxonomy::entrez::get_taxon /usr/local/share/perl/5.14.2/Bio/DB/Taxonomy/entrez.pm:326
STACK: main::get_lineage /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:305
STACK: main::add_taxonomy /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:289
STACK: /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:176
-----------------------------------------------------------

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Can't query website: 500 Can't connect to eutils.ncbi.nlm.nih.gov:80 (Connection timed out)
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl/5.14.2/Bio/Root/Root.pm:449
STACK: Bio::DB::Taxonomy::entrez::_run_query /usr/local/share/perl/5.14.2/Bio/DB/Taxonomy/entrez.pm:658
STACK: Bio::DB::Taxonomy::entrez::get_taxon /usr/local/share/perl/5.14.2/Bio/DB/Taxonomy/entrez.pm:326
STACK: main::get_lineage /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:305
STACK: main::add_taxonomy /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:289
STACK: /home/nick/dev/seqDB_tools/bin/NCBIprokaryoteTableFilter.pl:176
-----------------------------------------------------------

In [194]:

    

!cd $genomeDir; \
    perl -ne 'print if /Rhizobium etli CFN |Lactobacillus gasseri ADH/' prokaryotes_filt.txt


    

    




Rhizobium etli CFN 42	347834	PRJNA13932	13932	Proteobacteria	Alphaproteobacteria	6.53023	61.0458	NC_007761.1	CP000133.1	NC_007763.1,NC_007765.1,NC_004041.2,NC_007766.1,NC_007762.1,NC_007764.1	CP000135.1,CP000137.1,U80928.5,CP000138.1,CP000134.1,CP000136.1	-	7	6235	6001	2006/02/01	2015/02/08	Complete Genome	Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico	SAMN02603106	GCA_000092045.1	REPR	Rhizobium_etli/GCF_000092045	16505379	Bacteria	Proteobacteria	Alphaproteobacteria	Rhizobiales	Rhizobiaceae	Rhizobium	Rhizobium etli
Lactobacillus gasseri ADH	1395514	PRJNA249087	249087	Firmicutes	Bacilli	0.038269	37.4	-	KF767351.1	-	-	-	-	54	54	2014/04/03	2014/05/27	Complete	NCBI	-	-	-	-	24682298	Bacteria	Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	Lactobacillus gasseri

In [195]:

    

!cd $genomeDir; \
    perl -ni -e 'print unless /Rhizobium etli CFN |Lactobacillus gasseri ADH/' prokaryotes_filt.txt


    

In [196]:

    

!cd $genomeDir; \
    perl -ne 'print if /Rhizobium etli CFN |Lactobacillus gasseri ADH/' prokaryotes_filt.txt


    

In [197]:

    

%%bash -s "$genomeDir"

cd $1

NY_misc_perl tblRandomByField -c 32 \
    -header <(perl -ne '@l=split /\t/; print unless \$l[9] eq "-"' prokaryotes_filt.txt) \
    > prokaryotes_filt_rand.txt


    

In [198]:

    

!cd $genomeDir; \
    wc -l prokaryotes_filt_rand.txt


    

    




1337 prokaryotes_filt_rand.txt

In [199]:

    

!cd $genomeDir; \
    head -n 2 prokaryotes_filt_rand.txt


    

    




	superkingdom	phylum	class	order	family	genus	species
Paludibacter propionicigenes WB4	694427	PRJNA42009	42009	Bacteroidetes/Chlorobi group	Bacteroidetes	3.6855	38.9	NC_014734.1	CP002345.1	-	-	-	1	3041	2967	2010/11/23	2014/12/17	Complete Genome	US DOE Joint Genome Institute (JGI-PGF)	SAMN00016731	GCA_000183135.1	REPR	Paludibacter_propionicigenes/GCF_000183135	21475585	Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Porphyromonadaceae	Paludibacter	Paludibacter propionicigenes

In [200]:

    

%%bash -s "$genomeDir"

perl -ne '@l=split /\t/; print if $l[25] =~/bacteria|superkingdom/i && $l[31] !~ /NA/' \
    prokaryotes_filt_rand.txt > prok-bac_filt_rand.txt
printf "Number of bacterial genomes: "
wc -l prok-bac_filt_rand.txt


perl -ne '@l=split /\t/; print if $l[25] =~/archaea|superkingdom/i && $l[31] !~ /NA/' \
    prokaryotes_filt_rand.txt > prok-arc_filt_rand.txt
printf "Number of archaeal genomes: "
wc -l prok-arc_filt_rand.txt


    

    




Number of bacterial genomes: 1211 prok-bac_filt_rand.txt
Number of archaeal genomes: 126 prok-arc_filt_rand.txt

In [232]:

    

%%bash -s "$genomeDir"

cd $1

seqDB_tools NCBIprokaryoteTableFilter prok-bac_filt_rand.txt -t 30 -w -d prok-bac-genomes


    

    




Writing out fastas of each genome (fastas from GenBank accession numbers)...
Downloading Helicobacter hepaticus ATCC 51449
Downloading Mycoplasma bovis HB0801
Downloading Leptothrix cholodnii SP-6
Downloading Flavobacterium columnare ATCC 49512
Downloading Ramlibacter tataouinensis TTB310
Downloading Acidovorax avenae subsp. avenae ATCC 19860
Downloading Natranaerobius thermophilus JW/NM-WN-LF
Downloading Acidothermus cellulolyticus 11B
Downloading Bartonella australis Aust/NH1
Downloading Rhodobacter capsulatus SB 1003
Downloading Methylobacterium extorquens AM1
Downloading Mycoplasma haemocanis str. Illinois
Downloading Nitrobacter hamburgensis X14
Downloading Deinococcus maricopensis DSM 21211
Downloading Desulfosporosinus meridiei DSM 13257
Downloading Teredinibacter turnerae T7901
Downloading Streptococcus parauberis NCFD 2020
Downloading Vibrio campbellii ATCC BAA-1116
Downloading Escherichia fergusonii ATCC 35469
Downloading Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC 30255)
Downloading Corynebacterium diphtheriae C7 (beta)
Downloading Prevotella intermedia 17
Downloading Enterococcus mundtii QU 25
Downloading Bacteroides salanitronis DSM 18170
Downloading Burkholderia phytofirmans PsJN
Downloading Thermoanaerobacter mathranii subsp. mathranii str. A3
Downloading Alcanivorax dieselolei B5
Downloading Elusimicrobium minutum Pei191
Downloading Xanthomonas campestris pv. raphani 756C
Downloading Rickettsia philipii str. 364D
Successful download: Elusimicrobium minutum Pei191
Downloading Arcobacter nitrofigilis DSM 7299
Successful download: Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC 30255)
Downloading Shewanella putrefaciens 200
Successful download: Mycoplasma haemocanis str. Illinois
Downloading Shigella flexneri Shi06HN006
Successful download: Rickettsia philipii str. 364D
Downloading Vibrio alginolyticus NBRC 15630 = ATCC 17749
Successful download: Helicobacter hepaticus ATCC 51449
Downloading Mycoplasma suis KI3806
Successful download: Streptococcus parauberis NCFD 2020
Downloading Fervidobacterium nodosum Rt17-B1
Successful download: Bartonella australis Aust/NH1
Downloading Coraliomargarita akajimensis DSM 45221
Successful download: Corynebacterium diphtheriae C7 (beta)
Downloading Caldicellulosiruptor saccharolyticus DSM 8903
Successful download: Mycoplasma bovis HB0801
Downloading Frateuria aurantia DSM 6220
Successful download: Natranaerobius thermophilus JW/NM-WN-LF
Successful download: Acidothermus cellulolyticus 11B
Downloading Serratia liquefaciens ATCC 27592
Downloading Oscillatoria nigro-viridis PCC 7112
Successful download: Rhodobacter capsulatus SB 1003
Downloading Spiroplasma sabaudiense Ar-1343
Successful download: Mycoplasma suis KI3806
Downloading Kutzneria albida DSM 43870
Successful download: Enterococcus mundtii QU 25
Downloading Dehalobacter restrictus DSM 9455
Successful download: Flavobacterium columnare ATCC 49512
Downloading Tistrella mobilis KA081020-065
Successful download: Alcanivorax dieselolei B5
Downloading Edwardsiella tarda FL6-60
Successful download: Ramlibacter tataouinensis TTB310
Downloading Alcanivorax pacificus W11-5
Successful download: Prevotella intermedia 17
Downloading Lactobacillus helveticus H10
Successful download: Fervidobacterium nodosum Rt17-B1
Downloading Pseudomonas entomophila L48
Successful download: Thermoanaerobacter mathranii subsp. mathranii str. A3
Downloading uncultured Termite group 1 bacterium phylotype Rs-D17
Successful download: Spiroplasma sabaudiense Ar-1343
Downloading Treponema succinifaciens DSM 2489
Successful download: Teredinibacter turnerae T7901
Downloading Clostridium beijerinckii ATCC 35702
Successful download: Bacteroides salanitronis DSM 18170
Downloading Pseudomonas syringae pv. syringae B728a
Successful download: Leptothrix cholodnii SP-6
Successful download: Nitrobacter hamburgensis X14
Downloading Leuconostoc mesenteroides subsp. mesenteroides J18
Downloading Atopobium parvulum DSM 20469
Successful download: Arcobacter nitrofigilis DSM 7299
Downloading Desulfotomaculum gibsoniae DSM 7213
Successful download: Methylobacterium extorquens AM1
Downloading Acidithiobacillus ferrivorans SS3
Successful download: Deinococcus maricopensis DSM 21211
Successful download: Caldicellulosiruptor saccharolyticus DSM 8903
Downloading Deinococcus gobiensis I-0
Downloading Listeria monocytogenes serotype 4b str. CLIP 80459
Successful download: Xanthomonas campestris pv. raphani 756C
Downloading Borrelia bissettii DN127
Successful download: uncultured Termite group 1 bacterium phylotype Rs-D17
Downloading Amycolatopsis mediterranei S699
Successful download: Shewanella putrefaciens 200
Downloading Mannheimia succiniciproducens MBEL55E
Successful download: Vibrio campbellii ATCC BAA-1116
Downloading Magnetospirillum magneticum AMB-1
Successful download: Escherichia fergusonii ATCC 35469
Successful download: Coraliomargarita akajimensis DSM 45221
Downloading Mesorhizobium opportunistum WSM2075
Downloading Pseudonocardia dioxanivorans CB1190
Successful download: Frateuria aurantia DSM 6220
Downloading Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'
Successful download: Lactobacillus helveticus H10
Downloading Candidatus Desulforudis audaxviator MP104C
Successful download: Borrelia bissettii DN127
Downloading Catenulispora acidiphila DSM 44928
Successful download: Atopobium parvulum DSM 20469
Downloading Herbaspirillum seropedicae SmR1
Successful download: Vibrio alginolyticus NBRC 15630 = ATCC 17749
Downloading Citrobacter koseri ATCC BAA-895
Successful download: Desulfosporosinus meridiei DSM 13257
Downloading Saprospira grandis str. Lewin
Successful download: Acidovorax avenae subsp. avenae ATCC 19860
Downloading Anaplasma centrale str. Israel
Successful download: Leuconostoc mesenteroides subsp. mesenteroides J18
Downloading Edwardsiella piscicida C07-087
Successful download: Edwardsiella tarda FL6-60
Downloading Intrasporangium calvum DSM 43043
Successful download: Tistrella mobilis KA081020-065
Downloading Corynebacterium argentoratense DSM 44202
Successful download: Shigella flexneri Shi06HN006
Downloading Francisella noatunensis subsp. orientalis str. Toba 04
Successful download: Treponema succinifaciens DSM 2489
Downloading Kosakonia sacchari SP1
Successful download: Mannheimia succiniciproducens MBEL55E
Downloading Anaplasma phagocytophilum str. HZ2
Successful download: Anaplasma centrale str. Israel
Downloading Marinithermus hydrothermalis DSM 14884
Successful download: Deinococcus gobiensis I-0
Downloading Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Successful download: Burkholderia phytofirmans PsJN
Downloading Lactobacillus amylovorus GRL1118
Successful download: Dehalobacter restrictus DSM 9455
Downloading Coriobacterium glomerans PW2
Successful download: Candidatus Desulforudis audaxviator MP104C
Downloading Chlorobaculum parvum NCIB 8327
Successful download: Listeria monocytogenes serotype 4b str. CLIP 80459
Downloading Mycoplasma arthritidis 158L3-1
Successful download: Acidithiobacillus ferrivorans SS3
Successful download: Anaplasma phagocytophilum str. HZ2
Downloading Microbacterium testaceum StLB037
Downloading Bacteroides thetaiotaomicron VPI-5482
Successful download: Francisella noatunensis subsp. orientalis str. Toba 04
Downloading Lactobacillus reuteri SD2112
Successful download: Desulfotomaculum gibsoniae DSM 7213
Downloading Prevotella ruminicola 23
Successful download: Corynebacterium argentoratense DSM 44202
Downloading Streptomyces griseus subsp. griseus NBRC 13350
Successful download: Magnetospirillum magneticum AMB-1
Downloading Thermosipho africanus TCF52B
Successful download: Serratia liquefaciens ATCC 27592
Downloading Komagataeibacter xylinus E25
Successful download: Lactobacillus amylovorus GRL1118
Downloading Mycobacterium rhodesiae NBB3
Successful download: Oscillatoria nigro-viridis PCC 7112
Downloading Vibrio fischeri ES114
Successful download: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'
Downloading Stenotrophomonas maltophilia R551-3
Successful download: Mycoplasma arthritidis 158L3-1
Downloading Rhizobium etli bv. phaseoli str. IE4803
Successful download: Clostridium beijerinckii ATCC 35702
Downloading Arthrobacter chlorophenolicus A6
Successful download: Coriobacterium glomerans PW2
Successful download: Pseudomonas entomophila L48
Downloading Enterobacter cloacae subsp. cloacae ATCC 13047
Downloading Xanthomonas axonopodis pv. citri str. 306
Successful download: Saprospira grandis str. Lewin
Downloading Campylobacter insulaenigrae NCTC 12927
Successful download: Intrasporangium calvum DSM 43043
Downloading Rickettsia heilongjiangensis 054
Successful download: Herbaspirillum seropedicae SmR1
Successful download: Marinithermus hydrothermalis DSM 14884
Downloading Blattabacterium sp. (Periplaneta americana) str. BPLAN
Downloading Candidatus Liberibacter asiaticus str. Ishi-1
Successful download: Chlorobaculum parvum NCIB 8327
Downloading Borrelia parkeri HR1
Successful download: Lactobacillus reuteri SD2112
Downloading Clostridium autoethanogenum DSM 10061
Successful download: Pseudomonas syringae pv. syringae B728a
Successful download: Alcanivorax pacificus W11-5
Downloading Neisseria meningitidis LNP21362
Downloading Treponema brennaborense DSM 12168
Successful download: Citrobacter koseri ATCC BAA-895
Downloading Pelobacter propionicus DSM 2379
Successful download: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Downloading Campylobacter jejuni subsp. jejuni M1
Successful download: Thermosipho africanus TCF52B
Downloading Francisella philomiragia subsp. philomiragia ATCC 25015
Successful download: Pseudonocardia dioxanivorans CB1190
Successful download: Blattabacterium sp. (Periplaneta americana) str. BPLAN
Downloading Trichodesmium erythraeum IMS101
Downloading Niastella koreensis GR20-10
Successful download: Edwardsiella piscicida C07-087
Downloading Nitrosococcus oceani ATCC 19707
Successful download: Prevotella ruminicola 23
Downloading Paenibacillus polymyxa CR1
Successful download: Borrelia parkeri HR1
Downloading Mycoplasma penetrans HF-2
Successful download: Rickettsia heilongjiangensis 054
Downloading Mycobacterium yongonense 05-1390
Successful download: Candidatus Liberibacter asiaticus str. Ishi-1
Downloading Achromobacter xylosoxidans A8
Successful download: Mesorhizobium opportunistum WSM2075
Downloading Candidatus Kinetoplastibacterium desouzaii TCC079E
Successful download: Komagataeibacter xylinus E25
Downloading Terriglobus roseus DSM 18391
Successful download: Bacteroides thetaiotaomicron VPI-5482
Downloading Slackia heliotrinireducens DSM 20476
Successful download: Neisseria meningitidis LNP21362
Downloading Candidatus Kinetoplastibacterium blastocrithidii TCC012E
Successful download: Microbacterium testaceum StLB037
Downloading Prochlorococcus marinus str. MIT 9313
Successful download: Campylobacter insulaenigrae NCTC 12927
Successful download: Vibrio fischeri ES114
Downloading Chlamydophila felis Fe/C-56
Downloading Calditerrivibrio nitroreducens DSM 19672
Successful download: Francisella philomiragia subsp. philomiragia ATCC 25015
Downloading Psychrobacter cryohalolentis K5
Successful download: Candidatus Kinetoplastibacterium desouzaii TCC079E
Successful download: Mycoplasma penetrans HF-2
Downloading Burkholderia glumae BGR1
Downloading Streptococcus mutans NN2025
Successful download: Amycolatopsis mediterranei S699
Downloading Maricaulis maris MCS10
Successful download: Treponema brennaborense DSM 12168
Downloading Singulisphaera acidiphila DSM 18658
Successful download: Campylobacter jejuni subsp. jejuni M1
Downloading Rhizobium leguminosarum bv. trifolii WSM2304
Successful download: Stenotrophomonas maltophilia R551-3
Successful download: Candidatus Kinetoplastibacterium blastocrithidii TCC012E
Downloading Candidatus Blochmannia chromaiodes str. 640
Downloading Corynebacterium marinum DSM 44953
Successful download: Arthrobacter chlorophenolicus A6
Downloading Streptococcus thermophilus LMG 18311
Successful download: Rhizobium etli bv. phaseoli str. IE4803
Downloading Oligotropha carboxidovorans OM4
Successful download: Clostridium autoethanogenum DSM 10061
Downloading Neisseria lactamica 020-06
Successful download: Chlamydophila felis Fe/C-56
Downloading Thermoanaerobacterium thermosaccharolyticum M0795
Successful download: Pelobacter propionicus DSM 2379
Successful download: Xanthomonas axonopodis pv. citri str. 306
Downloading Candidatus Uzinura diaspidicola str. ASNER
Downloading Brevundimonas subvibrioides ATCC 15264
Successful download: Nitrosococcus oceani ATCC 19707
Downloading Fimbriimonas ginsengisoli Gsoil 348
Successful download: Mycobacterium rhodesiae NBB3
Downloading Lactococcus garvieae ATCC 49156
Successful download: Candidatus Blochmannia chromaiodes str. 640
Downloading Corynebacterium pseudotuberculosis FRC41
Successful download: Candidatus Uzinura diaspidicola str. ASNER
Downloading Mycobacterium abscessus subsp. bolletii 50594
Successful download: Streptomyces griseus subsp. griseus NBRC 13350
Downloading Pantoea vagans C9-1
Successful download: Slackia heliotrinireducens DSM 20476
Downloading Caldicellulosiruptor hydrothermalis 108
Successful download: Streptococcus mutans NN2025
Downloading Blastococcus saxobsidens DD2
Successful download: Calditerrivibrio nitroreducens DSM 19672
Downloading Salinibacter ruber DSM 13855
Successful download: Enterobacter cloacae subsp. cloacae ATCC 13047
Downloading Streptomyces fulvissimus DSM 40593
Successful download: Prochlorococcus marinus str. MIT 9313
Downloading Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
Successful download: Kutzneria albida DSM 43870
Downloading Micromonospora aurantiaca ATCC 27029
Successful download: Kosakonia sacchari SP1
Downloading Borrelia valaisiana VS116
Successful download: Psychrobacter cryohalolentis K5
Downloading Actinobacillus pleuropneumoniae serovar 5b str. L20
Successful download: Streptococcus thermophilus LMG 18311
Successful download: Corynebacterium marinum DSM 44953
Downloading Rhodospirillum rubrum F11
Downloading [Cellvibrio] gilvus ATCC 13127
Successful download: Trichodesmium erythraeum IMS101
Successful download: Maricaulis maris MCS10
Downloading Desulfatibacillum alkenivorans AK-01
Downloading Spirosoma linguale DSM 74
Successful download: Lactococcus garvieae ATCC 49156
Downloading Desulfohalobium retbaense DSM 5692
Successful download: Neisseria lactamica 020-06
Downloading Methylacidiphilum infernorum V4
Successful download: Corynebacterium pseudotuberculosis FRC41
Downloading Streptomyces cattleya NRRL 8057 = DSM 46488
Successful download: Terriglobus roseus DSM 18391
Downloading Herpetosiphon aurantiacus DSM 785
Successful download: Mycobacterium yongonense 05-1390
Downloading Thermotoga profunda AZM34c06
Successful download: Thermoanaerobacterium thermosaccharolyticum M0795
Downloading Ralstonia pickettii 12J
Successful download: Oligotropha carboxidovorans OM4
Downloading Rickettsia africae ESF-5
Successful download: Borrelia valaisiana VS116
Downloading Flavobacterium branchiophilum FL-15
Successful download: Rhizobium leguminosarum bv. trifolii WSM2304
Downloading Novosphingobium pentaromativorans US6-1
Successful download: Thermotoga profunda AZM34c06
Downloading Nocardia nova SH22a
Successful download: Actinobacillus pleuropneumoniae serovar 5b str. L20
Downloading Zymomonas mobilis subsp. mobilis NRRL B-12526
Successful download: Brevundimonas subvibrioides ATCC 15264
Downloading Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
Successful download: Caldicellulosiruptor hydrothermalis 108
Downloading Sphingobium chlorophenolicum L-1
Successful download: Salinibacter ruber DSM 13855
Downloading Desulfomonile tiedjei DSM 6799
Successful download: Rickettsia africae ESF-5
Downloading Helicobacter acinonychis str. Sheeba
Successful download: Fimbriimonas ginsengisoli Gsoil 348
Successful download: Pantoea vagans C9-1
Downloading Thiocystis violascens DSM 198
Downloading Oceanithermus profundus DSM 14977
Successful download: Catenulispora acidiphila DSM 44928
Successful download: Methylacidiphilum infernorum V4
Downloading Oscillatoria acuminata PCC 6304
Downloading Rickettsia bellii RML369-C
Successful download: Burkholderia glumae BGR1
Downloading Paracoccus denitrificans PD1222
Successful download: Niastella koreensis GR20-10
Downloading Thermotoga lettingae TMO
Successful download: Mycobacterium abscessus subsp. bolletii 50594
Downloading Buchnera aphidicola str. G002 (Myzus persicae)
Successful download: Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)
Downloading Pseudomonas putida F1
Successful download: Desulfohalobium retbaense DSM 5692
Downloading Burkholderia pseudomallei BPC006
Successful download: [Cellvibrio] gilvus ATCC 13127
Downloading Spiribacter salinus M19-40
Successful download: Syntrophomonas wolfei subsp. wolfei str. Goettingen G311
Downloading Clostridium kluyveri NBRC 12016
Successful download: Zymomonas mobilis subsp. mobilis NRRL B-12526
Downloading Desulfovibrio vulgaris str. 'Miyazaki F'
Successful download: Rhodospirillum rubrum F11
Downloading Methylobacillus flagellatus KT
Successful download: Helicobacter acinonychis str. Sheeba
Downloading Ehrlichia ruminantium str. Welgevonden
Successful download: Achromobacter xylosoxidans A8
Downloading Rhodothermus marinus DSM 4252
Successful download: Flavobacterium branchiophilum FL-15
Downloading Rickettsia helvetica C9P9
Successful download: Buchnera aphidicola str. G002 (Myzus persicae)
Downloading Odoribacter splanchnicus DSM 20712
Successful download: Rickettsia bellii RML369-C
Downloading Dickeya zeae EC1
Successful download: Singulisphaera acidiphila DSM 18658
Successful download: Rickettsia helvetica C9P9
Downloading Granulicella mallensis MP5ACTX8
Downloading Streptococcus infantarius subsp. infantarius CJ18
Successful download: Spiribacter salinus M19-40
Downloading Fervidobacterium pennivorans DSM 9078
Successful download: Micromonospora aurantiaca ATCC 27029
Downloading Clostridium botulinum 202F
Successful download: Oceanithermus profundus DSM 14977
Downloading Burkholderia gladioli BSR3
Successful download: Thermotoga lettingae TMO
Downloading Gloeobacter kilaueensis JS1
Successful download: Ehrlichia ruminantium str. Welgevonden
Downloading Cycloclasticus zancles 7-ME
Successful download: Paenibacillus polymyxa CR1
Downloading Spiroplasma syrphidicola EA-1
Successful download: Streptomyces cattleya NRRL 8057 = DSM 46488
Downloading Sphingomonas sanxanigenens DSM 19645 = NX02
Successful download: Sphingobium chlorophenolicum L-1
Downloading Anabaena variabilis ATCC 29413
Successful download: Blastococcus saxobsidens DD2
Downloading Acidovorax ebreus TPSY
Successful download: Clostridium kluyveri NBRC 12016
Downloading Veillonella parvula DSM 2008
Successful download: Desulfovibrio vulgaris str. 'Miyazaki F'
Downloading Candidatus Koribacter versatilis Ellin345
Successful download: Rhodothermus marinus DSM 4252
Downloading Pseudomonas fulva 12-X
Successful download: Streptococcus infantarius subsp. infantarius CJ18
Downloading Azotobacter chroococcum NCIMB 8003
Successful download: Fervidobacterium pennivorans DSM 9078
Successful download: Paracoccus denitrificans PD1222
Downloading Serratia proteamaculans 568
Downloading Pasteurella multocida subsp. multocida str. HN06
Successful download: Thiocystis violascens DSM 198
Downloading Salmonella bongori NCTC 12419
Successful download: Spiroplasma syrphidicola EA-1
Downloading Brachyspira hyodysenteriae WA1
Successful download: Desulfomonile tiedjei DSM 6799
Downloading Candidatus Rickettsia amblyommii str. GAT-30V
Successful download: Herpetosiphon aurantiacus DSM 785
Successful download: Ralstonia pickettii 12J
Downloading Rickettsia slovaca str. D-CWPP
Downloading Acetobacter pasteurianus IFO 3283-12
Successful download: Odoribacter splanchnicus DSM 20712
Downloading Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Successful download: Cycloclasticus zancles 7-ME
Downloading Mesotoga prima MesG1.Ag.4.2
Successful download: Spirosoma linguale DSM 74
Successful download: Methylobacillus flagellatus KT
Downloading Robiginitalea biformata HTCC2501
Downloading Amycolatopsis methanolica 239
Successful download: Nocardia nova SH22a
Downloading Halomonas elongata DSM 2581
Successful download: Dickeya zeae EC1
Downloading Pedobacter saltans DSM 12145
Successful download: Novosphingobium pentaromativorans US6-1
Downloading Eggerthella lenta DSM 2243
Successful download: Clostridium botulinum 202F
Successful download: Pseudomonas putida F1
Downloading Halobacteroides halobius DSM 5150
Downloading Klebsiella variicola At-22
Successful download: Veillonella parvula DSM 2008
Downloading Sulfurospirillum barnesii SES-3
Successful download: Oscillatoria acuminata PCC 6304
Downloading Thermotoga neapolitana DSM 4359
Successful download: Candidatus Rickettsia amblyommii str. GAT-30V
Downloading Weeksella virosa DSM 16922
Successful download: Gloeobacter kilaueensis JS1
Downloading Planctomyces limnophilus DSM 3776
Successful download: Pasteurella multocida subsp. multocida str. HN06
Downloading Ketogulonicigenium vulgare WSH-001
Successful download: Rickettsia slovaca str. D-CWPP
Downloading Syntrophus aciditrophicus SB
Successful download: Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Downloading Orientia tsutsugamushi str. Boryong
Successful download: Acidovorax ebreus TPSY
Successful download: Burkholderia pseudomallei BPC006
Downloading Rhodospirillum photometricum DSM 122
Downloading Ureaplasma parvum serovar 3 str. ATCC 700970
Successful download: Streptomyces fulvissimus DSM 40593
Downloading Taylorella equigenitalis MCE9
Successful download: Granulicella mallensis MP5ACTX8
Downloading Xylanimonas cellulosilytica DSM 15894
Successful download: Acetobacter pasteurianus IFO 3283-12
Downloading Streptococcus agalactiae COH1
Successful download: Brachyspira hyodysenteriae WA1
Downloading Desulfobacca acetoxidans DSM 11109
Successful download: Mesotoga prima MesG1.Ag.4.2
Downloading Candidatus Arthromitus sp. SFB-mouse-Yit
Successful download: Desulfatibacillum alkenivorans AK-01
Successful download: Ureaplasma parvum serovar 3 str. ATCC 700970
Downloading Haemophilus somnus 129PT
Downloading Streptococcus pneumoniae ST556
Successful download: Robiginitalea biformata HTCC2501
Downloading Bacillus methanolicus MGA3
Successful download: Thermotoga neapolitana DSM 4359
Downloading Cronobacter sakazakii SP291
Successful download: Halobacteroides halobius DSM 5150
Downloading Tsukamurella paurometabola DSM 20162
Successful download: Candidatus Koribacter versatilis Ellin345
Downloading Geobacter metallireducens GS-15
Successful download: Weeksella virosa DSM 16922
Downloading Shigella dysenteriae Sd197
Successful download: Azotobacter chroococcum NCIMB 8003
Downloading Gluconacetobacter diazotrophicus PA1 5
Successful download: Taylorella equigenitalis MCE9
Downloading Streptococcus constellatus subsp. pharyngis C232
Successful download: Sulfurospirillum barnesii SES-3
Successful download: Ketogulonicigenium vulgare WSH-001
Downloading Parabacteroides distasonis ATCC 8503
Downloading Borrelia burgdorferi ZS7
Successful download: Orientia tsutsugamushi str. Boryong
Downloading Desulfosporosinus acidiphilus SJ4
Successful download: Pseudomonas fulva 12-X
Downloading Deinococcus deserti VCD115
Successful download: Burkholderia gladioli BSR3
Downloading Sanguibacter keddieii DSM 10542
Successful download: Candidatus Arthromitus sp. SFB-mouse-Yit
Successful download: Anabaena variabilis ATCC 29413
Downloading Eubacterium rectale ATCC 33656
Downloading Chlamydophila caviae GPIC
Successful download: Halomonas elongata DSM 2581
Downloading Agrobacterium vitis S4
Successful download: Eggerthella lenta DSM 2243
Successful download: Syntrophus aciditrophicus SB
Downloading Bacillus halodurans C-125
Downloading Candidatus Carsonella ruddii PV
Successful download: Pedobacter saltans DSM 12145
Downloading Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069
Successful download: Haemophilus somnus 129PT
Successful download: Streptococcus agalactiae COH1
Downloading Thermobifida fusca YX
Successful download: Sphingomonas sanxanigenens DSM 19645 = NX02
Downloading Chromobacterium violaceum ATCC 12472
Downloading Hymenobacter swuensis DY53
Successful download: Streptococcus pneumoniae ST556
Downloading Cyanobium gracile PCC 6307
Successful download: Borrelia burgdorferi ZS7
Downloading Anaerolinea thermophila UNI-1
Successful download: Candidatus Carsonella ruddii PV
Downloading Caldisericum exile AZM16c01
Successful download: Desulfobacca acetoxidans DSM 11109
Downloading Aggregatibacter aphrophilus NJ8700
Successful download: Chlamydophila caviae GPIC
Downloading Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon
Successful download: Streptococcus constellatus subsp. pharyngis C232
Downloading Candidatus Accumulibacter phosphatis clade IIA str. UW-1
Successful download: Xylanimonas cellulosilytica DSM 15894
Downloading Bacillus licheniformis DSM 13 = ATCC 14580
Successful download: Planctomyces limnophilus DSM 3776
Downloading Isosphaera pallida ATCC 43644
Successful download: Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon
Downloading Acidovorax citrulli AAC00-1
Successful download: Bacillus methanolicus MGA3
Downloading Cryptobacterium curtum DSM 15641
Successful download: Klebsiella variicola At-22
Downloading Caldicellulosiruptor bescii DSM 6725
Successful download: Salmonella bongori NCTC 12419
Downloading Pseudomonas knackmussii B13
Successful download: Deinococcus deserti VCD115
Downloading [Clostridium] clariflavum DSM 19732
Successful download: Rhodospirillum photometricum DSM 122
Downloading Renibacterium salmoninarum ATCC 33209
Successful download: Serratia proteamaculans 568
Downloading Tepidanaerobacter acetatoxydans Re1
Successful download: Cronobacter sakazakii SP291
Downloading Caldicellulosiruptor obsidiansis OB47
Successful download: Geobacter metallireducens GS-15
Downloading Bacillus amyloliquefaciens SQR9
Successful download: Sanguibacter keddieii DSM 10542
Downloading Nitrosomonas europaea ATCC 19718
Successful download: Caldisericum exile AZM16c01
Downloading Thermobaculum terrenum ATCC BAA-798
Successful download: Shigella dysenteriae Sd197
Downloading cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake Yunoko
Successful download: Tsukamurella paurometabola DSM 20162
Downloading Borrelia recurrentis A1
Successful download: Amycolatopsis methanolica 239
Downloading Bacillus subtilis PY79
Successful download: Aggregatibacter aphrophilus NJ8700
Downloading Brucella suis bv. 1 str. S2
Successful download: Eubacterium rectale ATCC 33656
Downloading Corynebacterium ulcerans BR-AD22
Successful download: Bacillus halodurans C-125
Downloading Streptococcus salivarius JIM8777
Successful download: Cryptobacterium curtum DSM 15641
Downloading Marinitoga piezophila KA3
Successful download: Desulfosporosinus acidiphilus SJ4
Downloading Thermoanaerobacter italicus Ab9
Successful download: Gluconacetobacter diazotrophicus PA1 5
Successful download: Thermobifida fusca YX
Downloading Marivirga tractuosa DSM 4126
Downloading Pleurocapsa sp. PCC 7327
Successful download: Anaerolinea thermophila UNI-1
Downloading Corynebacterium callunae DSM 20147
Successful download: Borrelia recurrentis A1
Downloading Lactobacillus sakei subsp. sakei 23K
Successful download: Hymenobacter swuensis DY53
Downloading Chlamydophila abortus S26/3
Successful download: Bacillus licheniformis DSM 13 = ATCC 14580
Downloading Cardinium endosymbiont cEper1 of Encarsia pergandiella
Successful download: Caldicellulosiruptor obsidiansis OB47
Downloading Anoxybacillus flavithermus WK1
Successful download: Cyanobium gracile PCC 6307
Downloading Hyphomonas neptunium ATCC 15444
Successful download: Chromobacterium violaceum ATCC 12472
Downloading Leisingera methylohalidivorans DSM 14336
Successful download: Agrobacterium vitis S4
Downloading Magnetococcus marinus MC-1
Successful download: Corynebacterium ulcerans BR-AD22
Downloading Heliobacterium modesticaldum Ice1
Successful download: Tepidanaerobacter acetatoxydans Re1
Downloading Clostridium acetobutylicum DSM 1731
Successful download: Isosphaera pallida ATCC 43644
Downloading Brucella melitensis ATCC 23457
Successful download: Streptococcus salivarius JIM8777
Downloading Dickeya dadantii 3937
Successful download: Cardinium endosymbiont cEper1 of Encarsia pergandiella
Downloading Desulfurella acetivorans A63
Successful download: Caldicellulosiruptor bescii DSM 6725
Successful download: Marinitoga piezophila KA3
Successful download: Candidatus Accumulibacter phosphatis clade IIA str. UW-1
Downloading Pediococcus claussenii ATCC BAA-344
Downloading Barnesiella viscericola DSM 18177
Downloading Ruminococcus albus 7 = DSM 20455
Successful download: Parabacteroides distasonis ATCC 8503
Downloading Thermotoga petrophila RKU-1
Successful download: Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002069
Downloading Thermotoga hypogea NBRC 106472
Successful download: cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake Yunoko
Downloading Staphylococcus pseudintermedius ED99
Successful download: Brucella suis bv. 1 str. S2
Downloading Corallococcus coralloides DSM 2259
Successful download: Acidovorax citrulli AAC00-1
Downloading Elizabethkingia anophelis NUHP1
Successful download: Renibacterium salmoninarum ATCC 33209
Downloading Sinorhizobium fredii NGR234
Successful download: Chlamydophila abortus S26/3
Successful download: Corynebacterium callunae DSM 20147
Downloading Acidimicrobium ferrooxidans DSM 10331
Downloading Peptoclostridium difficile BI1
Successful download: Nitrosomonas europaea ATCC 19718
Downloading Streptomyces avermitilis MA-4680 = NBRC 14893
Successful download: Thermobaculum terrenum ATCC BAA-798
Downloading Yersinia frederiksenii Y225
Successful download: Bacillus amyloliquefaciens SQR9
Downloading Clostridium lentocellum DSM 5427
Successful download: Thermoanaerobacter italicus Ab9
Downloading Staphylococcus lugdunensis N920143
Successful download: Thermotoga hypogea NBRC 106472
Downloading Candidatus Kinetoplastibacterium galatii TCC219
Successful download: Bacillus subtilis PY79
Downloading Propionibacterium acnes 6609
Successful download: Lactobacillus sakei subsp. sakei 23K
Downloading Bifidobacterium pseudolongum PV8-2
Successful download: Anoxybacillus flavithermus WK1
Downloading Desulfitobacterium dehalogenans ATCC 51507
Successful download: Candidatus Kinetoplastibacterium galatii TCC219
Downloading Treponema denticola ATCC 35405
Successful download: [Clostridium] clariflavum DSM 19732
Downloading Mycoplasma wenyonii str. Massachusetts
Successful download: Thermotoga petrophila RKU-1
Downloading Enterobacter lignolyticus SCF1
Successful download: Hyphomonas neptunium ATCC 15444
Downloading Acetobacterium woodii DSM 1030
Successful download: Heliobacterium modesticaldum Ice1
Downloading Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Successful download: Desulfurella acetivorans A63
Downloading Streptomyces hygroscopicus subsp. jinggangensis 5008
Successful download: Staphylococcus pseudintermedius ED99
Downloading Caulobacter segnis ATCC 21756
Successful download: Marivirga tractuosa DSM 4126
Downloading Spiroplasma mirum ATCC 29335
Successful download: Pediococcus claussenii ATCC BAA-344
Downloading Acidobacterium capsulatum ATCC 51196
Successful download: Acidimicrobium ferrooxidans DSM 10331
Downloading Desulfitobacterium hafniense DCB-2
Successful download: Barnesiella viscericola DSM 18177
Downloading Pelotomaculum thermopropionicum SI
Successful download: Pleurocapsa sp. PCC 7327
Downloading Macrococcus caseolyticus JCSC5402
Successful download: Peptoclostridium difficile BI1
Downloading Thermotoga thermarum DSM 5069
Successful download: Mycoplasma wenyonii str. Massachusetts
Downloading Spirochaeta thermophila DSM 6578
Successful download: Bifidobacterium pseudolongum PV8-2
Downloading Thiobacillus denitrificans ATCC 25259
Successful download: Leisingera methylohalidivorans DSM 14336
Downloading Lactobacillus buchneri NRRL B-30929
Successful download: Magnetococcus marinus MC-1
Downloading Belliella baltica DSM 15883
Successful download: Brucella melitensis ATCC 23457
Downloading Desulfobacterium autotrophicum HRM2
Successful download: Propionibacterium acnes 6609
Downloading Fibrobacter succinogenes subsp. succinogenes S85
Successful download: Clostridium acetobutylicum DSM 1731
Downloading Aminobacterium colombiense DSM 12261
Successful download: Pseudomonas knackmussii B13
Successful download: Sinorhizobium fredii NGR234
Downloading Mobiluncus curtisii ATCC 43063
Downloading Bradyrhizobium japonicum USDA 6
Successful download: Spiroplasma mirum ATCC 29335
Downloading Butyrivibrio proteoclasticus B316
Successful download: Staphylococcus lugdunensis N920143
Downloading Planktomarina temperata RCA23
Successful download: Ruminococcus albus 7 = DSM 20455
Downloading Staphylococcus epidermidis RP62A
Successful download: Treponema denticola ATCC 35405
Downloading Sulfurimonas denitrificans DSM 1251
Successful download: Macrococcus caseolyticus JCSC5402
Downloading Dyella japonica A8
Successful download: Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Downloading Wolbachia endosymbiont of Drosophila simulans wHa
Successful download: Elizabethkingia anophelis NUHP1
Downloading Candidatus Liberibacter solanacearum CLso-ZC1
Successful download: Dickeya dadantii 3937
Downloading Rhodococcus erythropolis PR4
Successful download: Thermotoga thermarum DSM 5069
Downloading [Clostridium] acidurici 9a
Successful download: Desulfitobacterium dehalogenans ATCC 51507
Downloading Psychroflexus torquis ATCC 700755
Successful download: Acetobacterium woodii DSM 1030
Downloading Corynebacterium halotolerans YIM 70093 = DSM 44683
Successful download: Pelotomaculum thermopropionicum SI
Downloading Bacillus clausii KSM-K16
Successful download: Spirochaeta thermophila DSM 6578
Downloading Dinoroseobacter shibae DFL 12 = DSM 16493
Successful download: Clostridium lentocellum DSM 5427
Downloading Raoultella ornithinolytica B6
Successful download: Aminobacterium colombiense DSM 12261
Downloading Thermodesulfovibrio yellowstonii DSM 11347
Successful download: Yersinia frederiksenii Y225
Downloading Lactobacillus delbrueckii subsp. bulgaricus 2038
Successful download: Thiobacillus denitrificans ATCC 25259
Downloading Mycobacterium intracellulare 1956
Successful download: Candidatus Liberibacter solanacearum CLso-ZC1
Downloading Actinobacillus equuli subsp. equuli
Successful download: Wolbachia endosymbiont of Drosophila simulans wHa
Downloading Desulfococcus oleovorans Hxd3
Successful download: Lactobacillus buchneri NRRL B-30929
Successful download: Sulfurimonas denitrificans DSM 1251
Downloading Haemophilus ducreyi 35000HP
Downloading Bdellovibrio bacteriovorus W
Successful download: Staphylococcus epidermidis RP62A
Downloading Thermobacillus composti KWC4
Successful download: Mobiluncus curtisii ATCC 43063
Downloading Alkaliphilus oremlandii OhILAs
Successful download: Acidobacterium capsulatum ATCC 51196
Downloading Dehalogenimonas lykanthroporepellens BL-DC-9
Successful download: Caulobacter segnis ATCC 21756
Successful download: Enterobacter lignolyticus SCF1
Downloading Bartonella vinsonii subsp. berkhoffii str. Winnie
Downloading Amycolicicoccus subflavus DQS3-9A1
Successful download: Butyrivibrio proteoclasticus B316
Downloading Kribbella flavida DSM 17836
Successful download: Streptomyces avermitilis MA-4680 = NBRC 14893
Downloading Campylobacter subantarcticus LMG 24377
Successful download: Corallococcus coralloides DSM 2259
Downloading Arcobacter butzleri 7h1h
Successful download: Belliella baltica DSM 15883
Downloading Erythrobacter litoralis HTCC2594
Successful download: Fibrobacter succinogenes subsp. succinogenes S85
Downloading Mycoplasma crocodyli MP145
Successful download: Lactobacillus delbrueckii subsp. bulgaricus 2038
Downloading Chloroherpeton thalassium ATCC 35110
Successful download: Desulfobacterium autotrophicum HRM2
Downloading Eubacterium acidaminophilum DSM 3953
Successful download: Thermodesulfovibrio yellowstonii DSM 11347
Downloading Shewanella piezotolerans WP3
Successful download: [Clostridium] acidurici 9a
Downloading Oceanobacillus iheyensis HTE831
Successful download: Haemophilus ducreyi 35000HP
Downloading Anaplasma marginale str. Florida
Successful download: Actinobacillus equuli subsp. equuli
Downloading Mycoplasma genitalium M6320
Successful download: Psychroflexus torquis ATCC 700755
Downloading Mycoplasma bovoculi M165/69
Successful download: Dyella japonica A8
Downloading Bifidobacterium thermophilum RBL67
Successful download: Corynebacterium halotolerans YIM 70093 = DSM 44683
Downloading Desulfocapsa sulfexigens DSM 10523
Successful download: Bartonella vinsonii subsp. berkhoffii str. Winnie
Downloading Sphaerochaeta pleomorpha str. Grapes
Successful download: Mycoplasma crocodyli MP145
Downloading Leptospirillum ferrooxidans C2-3
Successful download: Bdellovibrio bacteriovorus W
Downloading Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
Successful download: Bacillus clausii KSM-K16
Downloading Helicobacter cetorum MIT 00-7128
Successful download: Dinoroseobacter shibae DFL 12 = DSM 16493
Downloading Nitrosospira multiformis ATCC 25196
Successful download: Mycoplasma genitalium M6320
Downloading Borrelia garinii SZ
Successful download: Mycoplasma bovoculi M165/69
Downloading Thermodesulfobium narugense DSM 14796
Successful download: Campylobacter subantarcticus LMG 24377
Downloading Sphaerochaeta globosa str. Buddy
Successful download: Dehalogenimonas lykanthroporepellens BL-DC-9
Downloading Bifidobacterium longum DJO10A
Successful download: Desulfitobacterium hafniense DCB-2
Downloading Ruminiclostridium thermocellum DSM 1313
Successful download: Eubacterium acidaminophilum DSM 3953
Successful download: Anaplasma marginale str. Florida
Downloading Beijerinckia indica subsp. indica ATCC 9039
Downloading Cytophaga hutchinsonii ATCC 33406
Successful download: Arcobacter butzleri 7h1h
Downloading Thermodesulfobacterium geofontis OPF15
Successful download: Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2
Downloading Agrobacterium radiobacter K84
Successful download: Streptomyces hygroscopicus subsp. jinggangensis 5008
Successful download: Desulfococcus oleovorans Hxd3
Downloading Shewanella violacea DSS12
Downloading Desulfurivibrio alkaliphilus AHT2
Successful download: Bifidobacterium thermophilum RBL67
Downloading Burkholderia vietnamiensis G4
Successful download: Alkaliphilus oremlandii OhILAs
Downloading Solibacillus silvestris StLB046
Successful download: Borrelia garinii SZ
Downloading Methylococcus capsulatus str. Bath
Successful download: Thermobacillus composti KWC4
Downloading Rhodospirillum centenum SW
Successful download: Rhodococcus erythropolis PR4
Successful download: Mycobacterium intracellulare 1956
Downloading Pseudomonas monteilii SB3101
Downloading Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Successful download: Erythrobacter litoralis HTCC2594
Downloading Bordetella parapertussis Bpp5
Successful download: Chloroherpeton thalassium ATCC 35110
Downloading Stigmatella aurantiaca DW4/3-1
Successful download: Bradyrhizobium japonicum USDA 6
Downloading Capnocytophaga canimorsus Cc5
Successful download: Helicobacter cetorum MIT 00-7128
Downloading Thermoanaerobacter wiegelii Rt8.B1
Successful download: Amycolicicoccus subflavus DQS3-9A1
Downloading Borrelia garinii PBi
Successful download: Leptospirillum ferrooxidans C2-3
Downloading Streptococcus dysgalactiae subsp. equisimilis 167
Successful download: Raoultella ornithinolytica B6
Downloading Actinoplanes missouriensis 431
Successful download: Thermodesulfobium narugense DSM 14796
Downloading Aeromonas hydrophila AL09-71
Successful download: Planktomarina temperata RCA23
Downloading Candidatus Ishikawaella capsulata Mpkobe
Successful download: Oceanobacillus iheyensis HTE831
Downloading Thermomonospora curvata DSM 43183
Successful download: Bifidobacterium longum DJO10A
Downloading Castellaniella defragrans 65Phen
Successful download: Thermodesulfobacterium geofontis OPF15
Downloading Bartonella grahamii as4aup
Successful download: Shewanella piezotolerans WP3
Downloading Nakamurella multipartita DSM 44233
Successful download: Sphaerochaeta pleomorpha str. Grapes
Downloading Lawsonia intracellularis N343
Successful download: Nitrosospira multiformis ATCC 25196
Downloading Nocardia farcinica IFM 10152
Successful download: Desulfocapsa sulfexigens DSM 10523
Downloading Bacillus toyonensis BCT-7112
Successful download: Borrelia garinii PBi
Downloading Hirschia baltica ATCC 49814
Successful download: Candidatus Ishikawaella capsulata Mpkobe
Downloading Lactobacillus kefiranofaciens ZW3
Successful download: Desulfurivibrio alkaliphilus AHT2
Successful download: Sphaerochaeta globosa str. Buddy
Downloading Liberibacter crescens BT-1
Downloading Gardnerella vaginalis ATCC 14019
Successful download: Ruminiclostridium thermocellum DSM 1313
Downloading Candidatus Sodalis pierantonius str. SOPE
Successful download: Bordetella parapertussis Bpp5
Downloading Mycoplasma yeatsii GM274B
Successful download: Cytophaga hutchinsonii ATCC 33406
Downloading Mycobacterium avium subsp. avium 2285 (R)
Successful download: Methylococcus capsulatus str. Bath
Downloading Oenococcus kitaharae DSM 17330
Successful download: Capnocytophaga canimorsus Cc5
Downloading Corynebacterium casei LMG S-19264
Successful download: Streptococcus dysgalactiae subsp. equisimilis 167
Downloading Clavibacter michiganensis subsp. sepedonicus
Successful download: Beijerinckia indica subsp. indica ATCC 9039
Downloading Sulfurimonas gotlandica GD1
Successful download: Lawsonia intracellularis N343
Downloading Cyclobacterium marinum DSM 745
Successful download: Bartonella grahamii as4aup
Downloading Aeromonas salmonicida subsp. salmonicida A449
Successful download: Thermoanaerobacter wiegelii Rt8.B1
Downloading Psychromonas ingrahamii 37
Successful download: Mycoplasma yeatsii GM274B
Successful download: Kribbella flavida DSM 17836
Downloading Eubacterium limosum KIST612
Downloading Mycobacterium kansasii ATCC 12478
Successful download: Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Downloading Caulobacter crescentus NA1000
Successful download: Lactobacillus kefiranofaciens ZW3
Downloading Dehalococcoides mccartyi CG5
Successful download: Rhodospirillum centenum SW
Downloading Mycoplasma mycoides subsp. mycoides
Successful download: Liberibacter crescens BT-1
Downloading Dictyoglomus turgidum DSM 6724
Successful download: Gardnerella vaginalis ATCC 14019
Downloading Comamonas testosteroni TK102
Successful download: Oenococcus kitaharae DSM 17330
Downloading Chlorobium phaeovibrioides DSM 265
Successful download: Solibacillus silvestris StLB046
Downloading Ralstonia eutropha H16
Successful download: Shewanella violacea DSS12
Downloading Erwinia billingiae Eb661
Successful download: Aeromonas hydrophila AL09-71
Downloading Mycoplasma ovis str. Michigan
Successful download: Agrobacterium radiobacter K84
Successful download: Corynebacterium casei LMG S-19264
Downloading Burkholderia cepacia GG4
Successful download: Mycoplasma mycoides subsp. mycoides
Downloading Mesorhizobium australicum WSM2073
Successful download: Pseudomonas monteilii SB3101
Downloading Thermanaerovibrio acidaminovorans DSM 6589
Downloading Chitinophaga pinensis DSM 2588
Successful download: Castellaniella defragrans 65Phen
Downloading Lactobacillus fermentum F-6
Successful download: Hirschia baltica ATCC 49814
Downloading Kyrpidia tusciae DSM 2912
Successful download: Dehalococcoides mccartyi CG5
Downloading Xanthobacter autotrophicus Py2
Successful download: Sulfurimonas gotlandica GD1
Downloading Rickettsia australis str. Cutlack
Successful download: Dictyoglomus turgidum DSM 6724
Downloading Candidatus Atelocyanobacterium thalassa isolate ALOHA
Successful download: Candidatus Sodalis pierantonius str. SOPE
Downloading Shewanella denitrificans OS217
Successful download: Chlorobium phaeovibrioides DSM 265
Downloading Deferribacter desulfuricans SSM1
Successful download: Mycoplasma ovis str. Michigan
Downloading Roseiflexus castenholzii DSM 13941
Successful download: Thermomonospora curvata DSM 43183
Downloading Moorella thermoacetica ATCC 39073
Successful download: Bacillus toyonensis BCT-7112
Downloading Desulfotomaculum kuznetsovii DSM 6115
Successful download: Stigmatella aurantiaca DW4/3-1
Downloading Desulfarculus baarsii DSM 2075
Successful download: Mycobacterium avium subsp. avium 2285 (R)
Downloading Geobacillus thermoleovorans CCB_US3_UF5
Successful download: Lactobacillus fermentum F-6
Downloading Chlorobium phaeobacteroides DSM 266
Successful download: Thermanaerovibrio acidaminovorans DSM 6589
Downloading Aster yellows witches'-broom phytoplasma AYWB
Successful download: Caulobacter crescentus NA1000
Downloading Anabaena cylindrica PCC 7122
Successful download: Clavibacter michiganensis subsp. sepedonicus
Downloading Xanthomonas axonopodis pv. citrumelo F1
Successful download: Candidatus Atelocyanobacterium thalassa isolate ALOHA
Downloading Acidithiobacillus ferrooxidans ATCC 53993
Successful download: Nakamurella multipartita DSM 44233
Downloading Arthrobacter aurescens TC1
Successful download: Aeromonas salmonicida subsp. salmonicida A449
Downloading Corynebacterium jeikeium K411
Successful download: Eubacterium limosum KIST612
Downloading Chlamydia psittaci MN
Successful download: Rickettsia australis str. Cutlack
Downloading Cellulophaga algicola DSM 14237
Successful download: Nocardia farcinica IFM 10152
Downloading Tannerella forsythia ATCC 43037
Successful download: Psychromonas ingrahamii 37
Downloading Xanthomonas axonopodis Xac29-1
Successful download: Aster yellows witches'-broom phytoplasma AYWB
Downloading Bacillus cytotoxicus NVH 391-98
Successful download: Deferribacter desulfuricans SSM1
Downloading Rhizobium tropici CIAT 899
Successful download: Actinoplanes missouriensis 431
Downloading Chlamydophila pneumoniae CWL029
Successful download: Kyrpidia tusciae DSM 2912
Downloading Acinetobacter oleivorans DR1
Successful download: Mycobacterium kansasii ATCC 12478
Downloading Isoptericola variabilis 225
Successful download: Chlamydia psittaci MN
Successful download: Comamonas testosteroni TK102
Downloading Vibrio tasmaniensis LGP32
Downloading Bifidobacterium adolescentis ATCC 15703
Successful download: Moorella thermoacetica ATCC 39073
Downloading Pedobacter heparinus DSM 2366
Successful download: Burkholderia vietnamiensis G4
Downloading Xanthomonas albilineans GPE PC73
Successful download: Chlorobium phaeobacteroides DSM 266
Downloading Desulfovibrio aespoeensis Aspo-2
Successful download: Shewanella denitrificans OS217
Downloading Pirellula staleyi DSM 6068
Successful download: Chlamydophila pneumoniae CWL029
Downloading Leptotrichia buccalis C-1013-b
Successful download: Acidithiobacillus ferrooxidans ATCC 53993
Downloading Nocardia cyriacigeorgica GUH-2
Successful download: Desulfotomaculum kuznetsovii DSM 6115
Downloading Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141
Successful download: Corynebacterium jeikeium K411
Downloading Prosthecochloris aestuarii DSM 271
Successful download: Cyclobacterium marinum DSM 745
Downloading Rhodococcus jostii RHA1
Successful download: Geobacillus thermoleovorans CCB_US3_UF5
Successful download: Desulfarculus baarsii DSM 2075
Downloading Melioribacter roseus P3M-2
Downloading Candidatus Pelagibacter ubique HTCC1062
Successful download: Xanthobacter autotrophicus Py2
Downloading Serratia fonticola RB-25
Successful download: Bifidobacterium adolescentis ATCC 15703
Downloading Sphaerochaeta coccoides DSM 17374
Successful download: Tannerella forsythia ATCC 43037
Downloading Mycobacterium tuberculosis str. Beijing/NITR203
Successful download: Roseiflexus castenholzii DSM 13941
Successful download: Xanthomonas axonopodis pv. citrumelo F1
Downloading Mannheimia varigena USDA-ARS-USMARC-1388
Downloading Streptococcus oralis Uo5
Successful download: Erwinia billingiae Eb661
Downloading Mycoplasma capricolum subsp. capricolum ATCC 27343
Successful download: Mesorhizobium australicum WSM2073
Downloading Caldicellulosiruptor kronotskyensis 2002
Successful download: Arthrobacter aurescens TC1
Downloading Pandoraea pnomenusa 3kgm
Successful download: Rhizobium tropici CIAT 899
Downloading Caldicellulosiruptor lactoaceticus 6A
Successful download: Burkholderia cepacia GG4
Downloading Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR
Successful download: Ralstonia eutropha H16
Downloading Candidatus Mycoplasma haemolamae str. Purdue
Successful download: Isoptericola variabilis 225
Downloading Burkholderia thailandensis 2002721723
Successful download: Mycoplasma capricolum subsp. capricolum ATCC 27343
Downloading Mycoplasma flocculare ATCC 27399
Successful download: Cellulophaga algicola DSM 14237
Downloading Rhodoferax ferrireducens T118
Successful download: Leptotrichia buccalis C-1013-b
Successful download: Candidatus Pelagibacter ubique HTCC1062
Downloading Neorickettsia sennetsu str. Miyayama
Downloading Azorhizobium caulinodans ORS 571
Successful download: Prosthecochloris aestuarii DSM 271
Downloading Corynebacterium glycinophilum AJ 3170
Successful download: Candidatus Mycoplasma haemolamae str. Purdue
Downloading Xylella fastidiosa subsp. fastidiosa GB514
Successful download: Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR
Downloading Variovorax paradoxus EPS
Successful download: Xanthomonas axonopodis Xac29-1
Successful download: Acinetobacter oleivorans DR1
Downloading Lactobacillus acidophilus NCFM
Downloading Methylotenera mobilis JLW8
Successful download: Bacillus cytotoxicus NVH 391-98
Downloading Vibrio furnissii NCTC 11218
Successful download: Streptococcus oralis Uo5
Downloading Capnocytophaga ochracea DSM 7271
Successful download: Mycoplasma flocculare ATCC 27399
Downloading Ralstonia solanacearum GMI1000
Successful download: Xanthomonas albilineans GPE PC73
Downloading Streptococcus lutetiensis 033
Successful download: Pedobacter heparinus DSM 2366
Downloading Rickettsia massiliae MTU5
Successful download: Sphaerochaeta coccoides DSM 17374
Downloading Amphibacillus xylanus NBRC 15112
Successful download: Melioribacter roseus P3M-2
Successful download: Desulfovibrio aespoeensis Aspo-2
Downloading Thalassospira xiamenensis M-5 = DSM 17429
Downloading Spiroplasma chrysopicola DF-1
Successful download: Neorickettsia sennetsu str. Miyayama
Downloading Leuconostoc citreum KM20
Successful download: Mannheimia varigena USDA-ARS-USMARC-1388
Downloading Bartonella clarridgeiae 73
Successful download: Chitinophaga pinensis DSM 2588
Downloading Zunongwangia profunda SM-A87
Successful download: Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141
Downloading Beutenbergia cavernae DSM 12333
Successful download: Vibrio tasmaniensis LGP32
Downloading Campylobacter concisus 13826
Successful download: Caldicellulosiruptor lactoaceticus 6A
Downloading Ralstonia eutropha JMP134
Successful download: Anabaena cylindrica PCC 7122
Downloading Chlamydia pecorum P787
Successful download: Caldicellulosiruptor kronotskyensis 2002
Downloading Aliivibrio salmonicida LFI1238
Successful download: Rickettsia massiliae MTU5
Downloading Treponema pallidum subsp. pallidum str. Sea 81-4
Successful download: Xylella fastidiosa subsp. fastidiosa GB514
Downloading Salinispora arenicola CNS-205
Successful download: Lactobacillus acidophilus NCFM
Downloading Xanthomonas oryzae pv. oryzae PXO99A
Successful download: Spiroplasma chrysopicola DF-1
Downloading Bacillus infantis NRRL B-14911
Successful download: Streptococcus lutetiensis 033
Downloading Stanieria cyanosphaera PCC 7437
Successful download: Nocardia cyriacigeorgica GUH-2
Successful download: Pirellula staleyi DSM 6068
Downloading Pseudoxanthomonas suwonensis 11-1
Downloading Haliangium ochraceum DSM 14365
Successful download: Leuconostoc citreum KM20
Downloading Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
Successful download: Capnocytophaga ochracea DSM 7271
Successful download: Chlamydia pecorum P787
Downloading Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
Downloading Geobacter daltonii FRC-32
Successful download: Mycobacterium tuberculosis str. Beijing/NITR203
Downloading Arcanobacterium haemolyticum DSM 20595
Successful download: Amphibacillus xylanus NBRC 15112
Downloading Candidatus Nasuia deltocephalinicola str. NAS-ALF
Successful download: Methylotenera mobilis JLW8
Downloading Ethanoligenens harbinense YUAN-3
Successful download: Corynebacterium glycinophilum AJ 3170
Downloading Shewanella frigidimarina NCIMB 400
Successful download: Bartonella clarridgeiae 73
Downloading Pseudomonas resinovorans NBRC 106553
Successful download: Campylobacter concisus 13826
Downloading Thioalkalimicrobium cyclicum ALM1
Successful download: Candidatus Nasuia deltocephalinicola str. NAS-ALF
Downloading Flavobacterium indicum GPTSA100-9 = DSM 17447
Successful download: Serratia fonticola RB-25
Downloading Candidatus Blochmannia pennsylvanicus str. BPEN
Successful download: Treponema pallidum subsp. pallidum str. Sea 81-4
Downloading Deinococcus peraridilitoris DSM 19664
Successful download: Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis
Downloading Borrelia duttonii Ly
Successful download: Rhodoferax ferrireducens T118
Downloading Mycobacterium africanum GM041182
Successful download: Azorhizobium caulinodans ORS 571
Downloading Bifidobacterium bifidum BGN4
Successful download: Ralstonia solanacearum GMI1000
Successful download: Burkholderia thailandensis 2002721723
Downloading Helicobacter pylori F16
Downloading Opitutus terrae PB90-1
Successful download: Candidatus Blochmannia pennsylvanicus str. BPEN
Downloading Methylobacterium oryzae CBMB20
Successful download: Rhodococcus jostii RHA1
Downloading Leifsonia xyli subsp. cynodontis DSM 46306
Successful download: Vibrio furnissii NCTC 11218
Downloading Chloroflexus aurantiacus J-10-fl
Successful download: Thalassospira xiamenensis M-5 = DSM 17429
Successful download: Borrelia duttonii Ly
Downloading Bordetella holmesii 44057
Downloading Kitasatospora setae KM-6054
Successful download: Beutenbergia cavernae DSM 12333
Downloading Candidatus Chloracidobacterium thermophilum B
Successful download: Zunongwangia profunda SM-A87
Downloading Serratia marcescens subsp. marcescens Db11
Successful download: Arcanobacterium haemolyticum DSM 20595
Downloading Cyanobacterium aponinum PCC 10605
Successful download: Thioalkalimicrobium cyclicum ALM1
Downloading Streptococcus uberis 0140J
Successful download: Flavobacterium indicum GPTSA100-9 = DSM 17447
Downloading Nostoc punctiforme PCC 73102
Successful download: Bifidobacterium bifidum BGN4
Downloading Arthrobacter arilaitensis Re117
Successful download: Helicobacter pylori F16
Downloading Advenella mimigardefordensis DPN7
Successful download: Variovorax paradoxus EPS
Downloading Yersinia pseudotuberculosis YPIII
Successful download: Xanthomonas oryzae pv. oryzae PXO99A
Downloading Lactobacillus johnsonii DPC 6026
Successful download: Salinispora arenicola CNS-205
Downloading Saccharomonospora viridis DSM 43017
Successful download: Ralstonia eutropha JMP134
Downloading Basilea psittacipulmonis DSM 24701
Successful download: Pseudoxanthomonas suwonensis 11-1
Downloading Alteromonas macleodii str. 'Balearic Sea AD45'
Successful download: Geobacter daltonii FRC-32
Downloading Mycobacterium liflandii 128FXT
Successful download: Leifsonia xyli subsp. cynodontis DSM 46306
Downloading Gallibacterium anatis UMN179
Successful download: Mycobacterium africanum GM041182
Successful download: Bacillus infantis NRRL B-14911
Downloading Mycoplasma cynos C142
Downloading Lactobacillus paracasei subsp. paracasei JCM 8130
Successful download: Deinococcus peraridilitoris DSM 19664
Downloading Coxiella burnetii Dugway 5J108-111
Successful download: Streptococcus uberis 0140J
Downloading Sodalis glossinidius str. 'morsitans'
Successful download: Ethanoligenens harbinense YUAN-3
Downloading Lactobacillus gasseri ATCC 33323 = JCM 1131
Successful download: Aliivibrio salmonicida LFI1238
Downloading Desulfotomaculum reducens MI-1
Successful download: Pandoraea pnomenusa 3kgm
Downloading Bibersteinia trehalosi USDA-ARS-USMARC-189
Successful download: Lactobacillus johnsonii DPC 6026
Downloading Bordetella pertussis 18323
Successful download: Chloroflexus aurantiacus J-10-fl
Downloading Neisseria gonorrhoeae FA 1090
Successful download: Cyanobacterium aponinum PCC 10605
Downloading Erwinia amylovora LA636
Successful download: Candidatus Chloracidobacterium thermophilum B
Downloading Emticicia oligotrophica DSM 17448
Successful download: Pseudomonas resinovorans NBRC 106553
Downloading Cronobacter turicensis z3032
Successful download: Arthrobacter arilaitensis Re117
Downloading Corynebacterium doosanense CAU 212 = DSM 45436
Successful download: Mycoplasma cynos C142
Successful download: Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
Downloading Streptococcus intermedius JTH08
Successful download: Bordetella holmesii 44057
Downloading Sorangium cellulosum So ce56
Downloading Lactobacillus casei subsp. casei ATCC 393
Successful download: Basilea psittacipulmonis DSM 24701
Downloading Leadbetterella byssophila DSM 17132
Successful download: Shewanella frigidimarina NCIMB 400
Downloading Mycoplasma putrefaciens KS1
Successful download: Coxiella burnetii Dugway 5J108-111
Downloading Olsenella uli DSM 7084
Successful download: Stanieria cyanosphaera PCC 7437
Successful download: Gallibacterium anatis UMN179
Downloading Pectobacterium carotovorum subsp. odoriferum
Downloading Nautilia profundicola AmH
Successful download: Advenella mimigardefordensis DPN7
Downloading Candidatus Hodgkinia cicadicola Dsem
Successful download: Lactobacillus paracasei subsp. paracasei JCM 8130
Downloading Ignavibacterium album JCM 16511
Successful download: Opitutus terrae PB90-1
Downloading Staphylococcus haemolyticus JCSC1435
Successful download: Lactobacillus gasseri ATCC 33323 = JCM 1131
Downloading Desulfobacula toluolica Tol2
Successful download: Candidatus Hodgkinia cicadicola Dsem
Downloading Aerococcus urinae ACS-120-V-Col10a
Successful download: Neisseria gonorrhoeae FA 1090
Downloading Candidatus Midichloria mitochondrii IricVA
Successful download: Mycoplasma putrefaciens KS1
Downloading Granulibacter bethesdensis CGDNIH4
Successful download: Saccharomonospora viridis DSM 43017
Downloading Mycobacterium bovis BCG str. Pasteur 1173P2
Successful download: Yersinia pseudotuberculosis YPIII
Successful download: Haliangium ochraceum DSM 14365
Successful download: Bordetella pertussis 18323
Successful download: Sodalis glossinidius str. 'morsitans'
Downloading Dictyoglomus thermophilum H-6-12
Downloading Campylobacter lari RM2100
Downloading Corynebacterium glutamicum ATCC 13032
Downloading Shewanella loihica PV-4
Successful download: Streptococcus intermedius JTH08
Downloading Mycobacterium gilvum PYR-GCK
Successful download: Methylobacterium oryzae CBMB20
Downloading Geobacillus thermoglucosidasius C56-YS93
Successful download: Bibersteinia trehalosi USDA-ARS-USMARC-189
Downloading Neisseria elongata subsp. glycolytica ATCC 29315
Successful download: Nautilia profundicola AmH
Successful download: Mycobacterium liflandii 128FXT
Downloading Nitrobacter winogradskyi Nb-255
Downloading Shigella sonnei 53G
Successful download: Nostoc punctiforme PCC 73102
Successful download: Corynebacterium doosanense CAU 212 = DSM 45436
Downloading Moraxella catarrhalis BBH18
Downloading Campylobacter peloridis LMG 23910
Successful download: Kitasatospora setae KM-6054
Successful download: Olsenella uli DSM 7084
Downloading Desulfotomaculum ruminis DSM 2154
Downloading Flavobacterium psychrophilum JIP02/86
Successful download: Candidatus Midichloria mitochondrii IricVA
Downloading Acaryochloris marina MBIC11017
Successful download: Lactobacillus casei subsp. casei ATCC 393
Downloading Borrelia miyamotoi LB-2001
Successful download: Serratia marcescens subsp. marcescens Db11
Downloading Mycobacterium leprae Br4923
Successful download: Desulfotomaculum reducens MI-1
Downloading Acidiphilium cryptum JF-5
Successful download: Aerococcus urinae ACS-120-V-Col10a
Downloading Leuconostoc carnosum JB16
Successful download: Alteromonas macleodii str. 'Balearic Sea AD45'
Downloading Sulfurospirillum deleyianum DSM 6946
Successful download: Campylobacter lari RM2100
Downloading Streptomyces lividans TK24
Successful download: Dictyoglomus thermophilum H-6-12
Downloading Deinococcus proteolyticus MRP
Successful download: Shigella sonnei 53G
Downloading Exiguobacterium sibiricum 255-15
Successful download: Ignavibacterium album JCM 16511
Downloading Staphylococcus carnosus subsp. carnosus TM300
Successful download: Staphylococcus haemolyticus JCSC1435
Downloading Actinobacillus suis ATCC 33415
Successful download: Borrelia miyamotoi LB-2001
Downloading Caldicellulosiruptor owensensis OL
Successful download: Cronobacter turicensis z3032
Downloading Paenibacillus terrae HPL-003
Successful download: Leadbetterella byssophila DSM 17132
Downloading Pelagibacterium halotolerans B2
Successful download: Campylobacter peloridis LMG 23910
Downloading Pseudomonas mandelii JR-1
Successful download: Corynebacterium glutamicum ATCC 13032
Downloading Bartonella quintana RM-11
Successful download: Neisseria elongata subsp. glycolytica ATCC 29315
Successful download: Granulibacter bethesdensis CGDNIH4
Downloading Nocardia brasiliensis ATCC 700358
Downloading Thermosipho melanesiensis BI429
Successful download: Moraxella catarrhalis BBH18
Downloading Crinalium epipsammum PCC 9333
Successful download: Emticicia oligotrophica DSM 17448
Downloading Bifidobacterium asteroides PRL2011
Successful download: Pectobacterium carotovorum subsp. odoriferum
Successful download: Leuconostoc carnosum JB16
Downloading Simkania negevensis Z
Downloading Anaeromyxobacter dehalogenans 2CP-C
Successful download: Mycobacterium leprae Br4923
Downloading Mycoplasma fermentans JER
Successful download: Erwinia amylovora LA636
Downloading Lactobacillus sanfranciscensis TMW 1.1304
Successful download: Nitrobacter winogradskyi Nb-255
Downloading Candidatus Riesia pediculicola USDA
Successful download: Sulfurospirillum deleyianum DSM 6946
Downloading Saccharothrix espanaensis DSM 44229
Successful download: Flavobacterium psychrophilum JIP02/86
Downloading Micavibrio aeruginosavorus EPB
Successful download: Deinococcus proteolyticus MRP
Downloading Mycoplasma agalactiae PG2
Successful download: Acidiphilium cryptum JF-5
Downloading Prevotella melaninogenica ATCC 25845
Successful download: Bartonella quintana RM-11
Downloading Streptomyces bingchenggensis BCW-1
Successful download: Geobacillus thermoglucosidasius C56-YS93
Downloading Aeromonas veronii B565
Successful download: Mycobacterium bovis BCG str. Pasteur 1173P2
Downloading Nitratifractor salsuginis DSM 16511
Successful download: Mycoplasma fermentans JER
Downloading Lactobacillus plantarum ZJ316
Successful download: Desulfobacula toluolica Tol2
Downloading Mesoplasma florum L1
Successful download: Actinobacillus suis ATCC 33415
Downloading Klebsiella pneumoniae 30660/NJST258_1
Successful download: Desulfotomaculum ruminis DSM 2154
Downloading Pseudomonas poae RE*1-1-14
Successful download: Candidatus Riesia pediculicola USDA
Downloading Ochrobactrum anthropi ATCC 49188
Successful download: Caldicellulosiruptor owensensis OL
Downloading Mycoplasma gallisepticum str. F
Successful download: Bifidobacterium asteroides PRL2011
Downloading Helicobacter felis ATCC 49179
Successful download: Exiguobacterium sibiricum 255-15
Successful download: Thermosipho melanesiensis BI429
Downloading Parvibaculum lavamentivorans DS-1
Downloading Methylobacterium populi BJ001
Successful download: Staphylococcus carnosus subsp. carnosus TM300
Downloading Petrotoga mobilis SJ95
Successful download: Mycoplasma agalactiae PG2
Downloading Laribacter hongkongensis HLHK9
Successful download: Mesoplasma florum L1
Successful download: Lactobacillus sanfranciscensis TMW 1.1304
Downloading Brucella canis HSK A52141
Downloading Shewanella oneidensis MR-1
Successful download: Mycobacterium gilvum PYR-GCK
Successful download: Simkania negevensis Z
Downloading Geobacillus kaustophilus HTA426
Downloading Syntrophothermus lipocalidus DSM 12680
Successful download: Pelagibacterium halotolerans B2
Downloading Sulfuricella denitrificans skB26
Successful download: Mycoplasma gallisepticum str. F
Downloading Yersinia aldovae 670-83
Successful download: Acaryochloris marina MBIC11017
Downloading Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
Successful download: Micavibrio aeruginosavorus EPB
Downloading Ferrimonas balearica DSM 9799
Successful download: Nitratifractor salsuginis DSM 16511
Downloading Terriglobus saanensis SP1PR4
Successful download: Prevotella melaninogenica ATCC 25845
Downloading Listeria seeligeri serovar 1/2b str. SLCC3954
Successful download: Lactobacillus plantarum ZJ316
Downloading Leptospirillum ferriphilum YSK
Successful download: Aeromonas veronii B565
Downloading Methylobacterium radiotolerans JCM 2831
Successful download: Paenibacillus terrae HPL-003
Downloading Burkholderia phymatum STM815
Successful download: Shewanella loihica PV-4
Downloading Bartonella henselae str. Houston-1
Successful download: Petrotoga mobilis SJ95
Downloading Treponema azotonutricium ZAS-9
Successful download: Streptomyces lividans TK24
Downloading Carnobacterium maltaromaticum LMA28
Successful download: Helicobacter felis ATCC 49179
Downloading Acidiphilium multivorum AIU301
Successful download: Pseudomonas mandelii JR-1
Downloading Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu
Successful download: Laribacter hongkongensis HLHK9
Downloading Burkholderia multivorans ATCC 17616
Successful download: Syntrophothermus lipocalidus DSM 12680
Downloading Thermomicrobium roseum DSM 5159
Successful download: Brucella canis HSK A52141
Downloading Polynucleobacter necessarius subsp. necessarius STIR1
Successful download: Sorangium cellulosum So ce56
Downloading Campylobacter hominis ATCC BAA-381
Successful download: Sulfuricella denitrificans skB26
Downloading Phycisphaera mikurensis NBRC 102666
Successful download: Geobacillus kaustophilus HTA426
Downloading Sulfurihydrogenibium azorense Az-Fu1
Successful download: Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu
Downloading Sphaerobacter thermophilus DSM 20745
Successful download: Bartonella henselae str. Houston-1
Downloading Rhodopseudomonas palustris BisB5
Successful download: Yersinia aldovae 670-83
Downloading Escherichia albertii KF1
Successful download: Klebsiella pneumoniae 30660/NJST258_1
Downloading Ammonifex degensii KC4
Successful download: Leptospirillum ferriphilum YSK
Downloading Edwardsiella ictaluri 93-146
Successful download: Parvibaculum lavamentivorans DS-1
Downloading Melissococcus plutonius DAT561
Successful download: Shewanella oneidensis MR-1
Downloading Corynebacterium kroppenstedtii DSM 44385
Successful download: Polynucleobacter necessarius subsp. necessarius STIR1
Downloading Tropheryma whipplei str. Twist
Successful download: Anaeromyxobacter dehalogenans 2CP-C
Downloading Onion yellows phytoplasma OY-M
Successful download: Listeria seeligeri serovar 1/2b str. SLCC3954
Downloading Flavobacterium johnsoniae UW101
Successful download: Crinalium epipsammum PCC 9333
Successful download: Campylobacter hominis ATCC BAA-381
Downloading Pseudomonas mendocina NK-01
Downloading Burkholderia mallei ATCC 23344
Successful download: Ferrimonas balearica DSM 9799
Successful download: Sulfurihydrogenibium azorense Az-Fu1
Downloading Verrucosispora maris AB-18-032
Downloading Coprothermobacter proteolyticus DSM 5265
Successful download: Ochrobactrum anthropi ATCC 49188
Downloading Mycoplasma californicum HAZ160_1
Successful download: Nocardia brasiliensis ATCC 700358
Downloading Rickettsia typhi str. TH1527
Successful download: Tropheryma whipplei str. Twist
Downloading Bordetella bronchiseptica 253
Successful download: Onion yellows phytoplasma OY-M
Downloading Streptococcus macedonicus ACA-DC 198
Successful download: Pseudomonas poae RE*1-1-14
Downloading Mycoplasma hominis ATCC 23114
Successful download: Thermomicrobium roseum DSM 5159
Downloading Synechococcus elongatus PCC 7942
Successful download: Melissococcus plutonius DAT561
Downloading Azotobacter vinelandii CA6
Successful download: Terriglobus saanensis SP1PR4
Downloading Gordonia polyisoprenivorans VH2
Successful download: Treponema azotonutricium ZAS-9
Downloading Paracoccus aminophilus JCM 7686
Successful download: Acidiphilium multivorum AIU301
Downloading Sideroxydans lithotrophicus ES-1
Successful download: Carnobacterium maltaromaticum LMA28
Downloading Escherichia coli 1303
Successful download: Saccharothrix espanaensis DSM 44229
Downloading Thermosynechococcus elongatus BP-1
Successful download: Corynebacterium kroppenstedtii DSM 44385
Downloading Paludibacter propionicigenes WB4
Successful download: Mycoplasma californicum HAZ160_1
Downloading Bartonella tribocorum CIP 105476
Successful download: Phycisphaera mikurensis NBRC 102666
Downloading Burkholderia ambifaria AMMD
Successful download: Ammonifex degensii KC4
Downloading Sulfobacillus acidophilus DSM 10332
Successful download: Coprothermobacter proteolyticus DSM 5265
Downloading Rickettsia felis URRWXCal2
Successful download: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
Successful download: Rickettsia typhi str. TH1527
Downloading Treponema paraluiscuniculi Cuniculi A
Downloading Thioalkalivibrio sulfidiphilus HL-EbGr7
Successful download: Mycoplasma hominis ATCC 23114
Downloading Pseudomonas stutzeri DSM 4166
Successful download: Methylobacterium radiotolerans JCM 2831
Downloading Psychrobacter arcticus 273-4
Successful download: Methylobacterium populi BJ001
Downloading Amycolatopsis orientalis HCCB10007
Successful download: Edwardsiella ictaluri 93-146
Downloading Cupriavidus metallidurans CH34
Successful download: Burkholderia phymatum STM815
Downloading Taylorella asinigenitalis MCE3
Successful download: Escherichia albertii KF1
Downloading Parvularcula bermudensis HTCC2503
Successful download: Sphaerobacter thermophilus DSM 20745
Downloading Ehrlichia chaffeensis str. West Paces
Successful download: Burkholderia multivorans ATCC 17616
Downloading Rhodococcus equi 103S
Successful download: Treponema paraluiscuniculi Cuniculi A
Downloading Hyphomicrobium denitrificans 1NES1
Successful download: Bordetella bronchiseptica 253
Downloading Clostridium novyi NT
Successful download: Rhodopseudomonas palustris BisB5
Downloading Treponema pedis str. T A4
Successful download: Synechococcus elongatus PCC 7942
Downloading Treponema primitia ZAS-2
Successful download: Streptococcus macedonicus ACA-DC 198
Downloading Shewanella amazonensis SB2B
Successful download: Rickettsia felis URRWXCal2
Downloading Mycoplasma synoviae 53
Successful download: Streptomyces bingchenggensis BCW-1
Downloading Clostridiales genomosp. BVAB3 str. UPII9-5
Successful download: Paracoccus aminophilus JCM 7686
Downloading Mesorhizobium ciceri biovar biserrulae WSM1271
Successful download: Pseudomonas mendocina NK-01
Downloading Ureaplasma urealyticum serovar 10 str. ATCC 33699
Successful download: Sideroxydans lithotrophicus ES-1
Downloading Erysipelothrix rhusiopathiae SY1027
Successful download: Ehrlichia chaffeensis str. West Paces
Downloading Hafnia alvei FB1
Successful download: Taylorella asinigenitalis MCE3
Downloading Thermotoga naphthophila RKU-10
Successful download: Psychrobacter arcticus 273-4
Downloading Spiroplasma diminutum CUAS-1
Successful download: Thermosynechococcus elongatus BP-1
Downloading Ilyobacter polytropus DSM 2926
Successful download: Mycoplasma synoviae 53
Downloading Oscillibacter valericigenes Sjm18-20
Successful download: Ureaplasma urealyticum serovar 10 str. ATCC 33699
Downloading Streptosporangium roseum DSM 43021
Successful download: Flavobacterium johnsoniae UW101
Downloading Bacillus pumilus SAFR-032
Successful download: Sulfobacillus acidophilus DSM 10332
Downloading Streptomyces pratensis ATCC 33331
Successful download: Thioalkalivibrio sulfidiphilus HL-EbGr7
Downloading Methylovorus glucosetrophus SIP3-4
Successful download: Spiroplasma diminutum CUAS-1
Downloading Roseobacter litoralis Och 149
Successful download: Pseudomonas stutzeri DSM 4166
Downloading Brevibacillus brevis NBRC 100599
Successful download: Escherichia coli 1303
Downloading Rickettsia peacockii str. Rustic
Successful download: Bartonella tribocorum CIP 105476
Downloading Corynebacterium efficiens YS-314
Successful download: Azotobacter vinelandii CA6
Successful download: Clostridiales genomosp. BVAB3 str. UPII9-5
Downloading Thermotoga elfii NBRC 107921
Downloading Proteus mirabilis BB2000
Successful download: Parvularcula bermudensis HTCC2503
Downloading Selenomonas sputigena ATCC 35185
Successful download: Cupriavidus metallidurans CH34
Successful download: Treponema pedis str. T A4
Downloading Enterobacter aerogenes KCTC 2190
Downloading Thermus oshimai JL-2
Successful download: Erysipelothrix rhusiopathiae SY1027
Downloading Spirochaeta africana DSM 8902
Successful download: Clostridium novyi NT
Downloading Myxococcus fulvus HW-1
Successful download: Gordonia polyisoprenivorans VH2
Downloading Porphyromonas asaccharolytica DSM 20707
Successful download: Hyphomicrobium denitrificans 1NES1
Downloading Chlamydia avium 10DC88
Successful download: Ilyobacter polytropus DSM 2926
Downloading Rhodococcus opacus B4
Successful download: Thermotoga naphthophila RKU-10
Downloading Candidatus Zinderia insecticola CARI
Successful download: Treponema primitia ZAS-2
Downloading Lactococcus lactis subsp. cremoris UC509.9
Successful download: Verrucosispora maris AB-18-032
Downloading Clostridium ljungdahlii DSM 13528
Successful download: Thermotoga elfii NBRC 107921
Successful download: Rickettsia peacockii str. Rustic
Downloading Granulicella tundricola MP5ACTX9
Downloading Pseudomonas aeruginosa RP73
Successful download: Burkholderia mallei ATCC 23344
Successful download: Paludibacter propionicigenes WB4
Downloading Leuconostoc kimchii IMSNU 11154
Downloading Campylobacter volucris LMG 24379
Successful download: Shewanella amazonensis SB2B
Downloading Blattabacterium sp. (Blattella germanica) str. Bge
Successful download: Candidatus Zinderia insecticola CARI
Downloading Alistipes finegoldii DSM 17242
Successful download: Hafnia alvei FB1
Downloading Octadecabacter antarcticus 307
Successful download: Thermus oshimai JL-2
Downloading Verrucomicrobium spinosum DSM 4136 = JCM 18804
Successful download: Oscillibacter valericigenes Sjm18-20
Downloading Kocuria rhizophila DC2201
Successful download: Chlamydia avium 10DC88
Downloading Advenella kashmirensis WT001
Successful download: Lactococcus lactis subsp. cremoris UC509.9
Downloading Candidatus Puniceispirillum marinum IMCC1322
Successful download: Campylobacter volucris LMG 24379
Downloading Marinobacter hydrocarbonoclasticus ATCC 49840
Successful download: Blattabacterium sp. (Blattella germanica) str. Bge
Downloading Haemophilus parasuis ZJ0906
Successful download: Methylovorus glucosetrophus SIP3-4
Downloading Corynebacterium resistens DSM 45100
Successful download: Selenomonas sputigena ATCC 35185
Downloading Desulfotomaculum carboxydivorans CO-1-SRB
Successful download: Proteus mirabilis BB2000
Successful download: Burkholderia ambifaria AMMD
Downloading Ruegeria pomeroyi DSS-3
Downloading Corynebacterium humireducens NBRC 106098 = DSM 45392
Successful download: Porphyromonas asaccharolytica DSM 20707
Downloading Geobacter sulfurreducens KN400
Successful download: Amycolatopsis orientalis HCCB10007
Downloading Bacteroides helcogenes P 36-108
Successful download: Bacillus pumilus SAFR-032
Downloading Candidatus Endolissoclinum faulkneri L2
Successful download: Mesorhizobium ciceri biovar biserrulae WSM1271
Successful download: Spirochaeta africana DSM 8902
Downloading Persephonella marina EX-H1
Downloading Azospirillum lipoferum 4B
Successful download: Roseobacter litoralis Och 149
Downloading Croceibacter atlanticus HTCC2559
Successful download: Corynebacterium efficiens YS-314
Downloading Desulfosporosinus orientis DSM 765
Successful download: Rhodococcus equi 103S
Downloading Hydrogenobacter thermophilus TK-6
Successful download: Kocuria rhizophila DC2201
Downloading Aggregatibacter actinomycetemcomitans D7S-1
Successful download: Haemophilus parasuis ZJ0906
Downloading Thermoanaerobacter brockii subsp. finnii Ako-1
Successful download: Enterobacter aerogenes KCTC 2190
Downloading Mycoplasma pneumoniae 309
Successful download: Candidatus Endolissoclinum faulkneri L2
Successful download: Clostridium ljungdahlii DSM 13528
Downloading Vibrio tubiashii ATCC 19109
Downloading Clostridium cellulolyticum H10
Successful download: Candidatus Puniceispirillum marinum IMCC1322
Downloading Rhizobium gallicum bv. gallicum R602
Successful download: Leuconostoc kimchii IMSNU 11154
Downloading Pseudomonas denitrificans ATCC 13867
Successful download: Corynebacterium resistens DSM 45100
Downloading Simiduia agarivorans SA1 = DSM 21679
Successful download: Desulfotomaculum carboxydivorans CO-1-SRB
Downloading Mycobacterium ulcerans Agy99
Successful download: Alistipes finegoldii DSM 17242
Downloading Clostridium pasteurianum DSM 525 = ATCC 6013
Successful download: Persephonella marina EX-H1
Downloading Thermaerobacter marianensis DSM 12885
Successful download: Granulicella tundricola MP5ACTX9
Downloading Treponema caldaria DSM 7334
Successful download: Corynebacterium humireducens NBRC 106098 = DSM 45392
Downloading Candidatus Vesicomyosocius okutanii HA
Successful download: Verrucomicrobium spinosum DSM 4136 = JCM 18804
Downloading Filifactor alocis ATCC 35896
Successful download: Mycoplasma pneumoniae 309
Downloading Sinorhizobium medicae WSM419
Successful download: Advenella kashmirensis WT001
Downloading Finegoldia magna ATCC 29328
Successful download: Octadecabacter antarcticus 307
Downloading Rhodomicrobium vannielii ATCC 17100
Successful download: Ruegeria pomeroyi DSS-3
Downloading Shewanella halifaxensis HAW-EB4
Successful download: Pseudomonas aeruginosa RP73
Downloading Thermodesulfatator indicus DSM 15286
Successful download: Croceibacter atlanticus HTCC2559
Downloading Desulfitobacterium metallireducens DSM 15288
Successful download: Geobacter sulfurreducens KN400
Downloading Hippea maritima DSM 10411
Successful download: Marinobacter hydrocarbonoclasticus ATCC 49840
Downloading Jonesia denitrificans DSM 20603
Successful download: Azospirillum lipoferum 4B
Successful download: Hydrogenobacter thermophilus TK-6
Downloading Sinorhizobium meliloti AK83
Downloading Thermocrinis albus DSM 14484
Successful download: Aggregatibacter actinomycetemcomitans D7S-1
Downloading Chlamydia muridarum str. Nigg3 CMUT3-5
Successful download: Candidatus Vesicomyosocius okutanii HA
Downloading Bifidobacterium indicum LMG 11587 = DSM 20214
Successful download: Bacteroides helcogenes P 36-108
Downloading Desulfobulbus propionicus DSM 2032
Successful download: Rhodococcus opacus B4
Downloading Kineococcus radiotolerans SRS30216 = ATCC BAA-149
Successful download: Thermoanaerobacter brockii subsp. finnii Ako-1
Downloading Nitrosococcus watsonii C-113
Successful download: Streptomyces pratensis ATCC 33331
Downloading Chlorobium limicola DSM 245
Successful download: Filifactor alocis ATCC 35896
Downloading Octadecabacter arcticus 238
Successful download: Finegoldia magna ATCC 29328
Downloading Cellulomonas flavigena DSM 20109
Successful download: Streptosporangium roseum DSM 43021
Successful download: Myxococcus fulvus HW-1
Successful download: Brevibacillus brevis NBRC 100599
Downloading Saccharopolyspora erythraea NRRL 2338
Downloading Methylomonas methanica MC09
Downloading 'Nostoc azollae' 0708
Successful download: Chlamydia muridarum str. Nigg3 CMUT3-5
Downloading Delftia acidovorans SPH-1
Successful download: Desulfosporosinus orientis DSM 765
Successful download: Hippea maritima DSM 10411
Downloading Micrococcus luteus NCTC 2665
Downloading Streptobacillus moniliformis DSM 12112
Successful download: Clostridium cellulolyticum H10
Downloading Desulfotalea psychrophila LSv54
Successful download: Rhizobium gallicum bv. gallicum R602
Downloading Collimonas fungivorans Ter331
Successful download: Bifidobacterium indicum LMG 11587 = DSM 20214
Downloading Myxococcus stipitatus DSM 14675
Successful download: Clostridium pasteurianum DSM 525 = ATCC 6013
Downloading Pelodictyon phaeoclathratiforme BU-1
Successful download: Thermodesulfatator indicus DSM 15286
Downloading Pseudoalteromonas atlantica T6c
Successful download: Thermocrinis albus DSM 14484
Downloading Dactylococcopsis salina PCC 8305
Successful download: Vibrio tubiashii ATCC 19109
Downloading Mycoplasma parvum str. Indiana
Successful download: Simiduia agarivorans SA1 = DSM 21679
Downloading Candidatus Moranella endobia PCVAL
Successful download: Thermaerobacter marianensis DSM 12885
Downloading Caldilinea aerophila DSM 14535 = NBRC 104270
Successful download: Treponema caldaria DSM 7334
Successful download: Sinorhizobium medicae WSM419
Downloading Mesorhizobium loti MAFF303099
Downloading Acidithiobacillus caldus ATCC 51756
Successful download: Mycobacterium ulcerans Agy99
Downloading Blattabacterium sp. (Blatta orientalis) str. Tarazona
Successful download: Rhodomicrobium vannielii ATCC 17100
Downloading Shewanella baltica OS117
Successful download: Nitrosococcus watsonii C-113
Downloading Bacteroides vulgatus ATCC 8482
Successful download: Desulfitobacterium metallireducens DSM 15288
Downloading Vibrio cholerae MJ-1236
Successful download: Candidatus Moranella endobia PCVAL
Successful download: Pseudomonas denitrificans ATCC 13867
Downloading Adlercreutzia equolifaciens DSM 19450
Successful download: Mycoplasma parvum str. Indiana
Downloading Polaromonas naphthalenivorans CJ2
Downloading Corynebacterium maris DSM 45190
Successful download: Jonesia denitrificans DSM 20603
Downloading Ilumatobacter coccineus YM16-304
Successful download: Chlorobium limicola DSM 245
Downloading Bacillus thuringiensis serovar galleriae
Successful download: Streptobacillus moniliformis DSM 12112
Downloading Bacillus cereus G9241
Successful download: Desulfobulbus propionicus DSM 2032
Downloading Planctomyces brasiliensis DSM 5305
Successful download: Blattabacterium sp. (Blatta orientalis) str. Tarazona
Downloading Bordetella avium 197N
Successful download: Micrococcus luteus NCTC 2665
Downloading Pectobacterium wasabiae WPP163
Successful download: Cellulomonas flavigena DSM 20109
Downloading Alkaliphilus metalliredigens QYMF
Successful download: Kineococcus radiotolerans SRS30216 = ATCC BAA-149
Downloading Nonlabens dokdonensis DSW-6
Successful download: Octadecabacter arcticus 238
Downloading Geobacter bemidjiensis Bem
Successful download: Pelodictyon phaeoclathratiforme BU-1
Downloading Thermoanaerobacterium saccharolyticum JW/SL-YS485
Successful download: 'Nostoc azollae' 0708
Successful download: Acidithiobacillus caldus ATCC 51756
Downloading Xenorhabdus bovienii SS-2004
Downloading Desulfitobacterium dichloroeliminans LMG P-21439
Successful download: Desulfotalea psychrophila LSv54
Downloading Desulfurobacterium thermolithotrophum DSM 11699
Successful download: Shewanella halifaxensis HAW-EB4
Downloading Yersinia pestis biovar Microtus str. 91001
Successful download: Dactylococcopsis salina PCC 8305
Downloading Nocardiopsis alba ATCC BAA-2165
Successful download: Corynebacterium maris DSM 45190
Downloading Bacillus lehensis G1
Successful download: Collimonas fungivorans Ter331
Downloading Frankia alni ACN14a
Successful download: Adlercreutzia equolifaciens DSM 19450
Downloading Rubrobacter xylanophilus DSM 9941
Successful download: Methylomonas methanica MC09
Downloading Glaciecola psychrophila 170
Successful download: Caldilinea aerophila DSM 14535 = NBRC 104270
Downloading Salinispora tropica CNB-440
Successful download: Pseudoalteromonas atlantica T6c
Downloading Bacillus atrophaeus 1942
Successful download: Delftia acidovorans SPH-1
Downloading Paenibacillus sabinae T27
Successful download: Desulfurobacterium thermolithotrophum DSM 11699
Downloading Phaeobacter inhibens DSM 17395
Successful download: Vibrio cholerae MJ-1236
Downloading Akkermansia muciniphila ATCC BAA-835
Successful download: Sinorhizobium meliloti AK83
Downloading Thermosediminibacter oceani DSM 16646
Successful download: Nonlabens dokdonensis DSW-6
Downloading Thioalkalimicrobium aerophilum AL3
Successful download: Bacteroides vulgatus ATCC 8482
Downloading Sulfuritalea hydrogenivorans sk43H
Successful download: Polaromonas naphthalenivorans CJ2
Downloading Marinomonas posidonica IVIA-Po-181
Successful download: Bacillus cereus G9241
Downloading Morganella morganii subsp. morganii KT
Successful download: Pectobacterium wasabiae WPP163
Successful download: Bacillus thuringiensis serovar galleriae
Downloading Mycobacterium neoaurum VKM Ac-1815D
Downloading Xanthomonas campestris pv. vesicatoria str. 85-10
Successful download: Bordetella avium 197N
Downloading Fluviicola taffensis DSM 16823
Successful download: Thermoanaerobacterium saccharolyticum JW/SL-YS485
Successful download: Desulfitobacterium dichloroeliminans LMG P-21439
Downloading Citrobacter freundii CFNIH1
Downloading Mycobacterium indicus pranii MTCC 9506
Successful download: Alkaliphilus metalliredigens QYMF
Downloading Corynebacterium vitaeruminis DSM 20294
Successful download: Bacillus lehensis G1
Downloading Rickettsia sibirica 246
Successful download: Geobacter bemidjiensis Bem
Downloading Pseudomonas balearica DSM 6083
Successful download: Myxococcus stipitatus DSM 14675
Downloading Wolbachia endosymbiont strain TRS of Brugia malayi
Successful download: Akkermansia muciniphila ATCC BAA-835
Downloading Caldicellulosiruptor kristjanssonii I77R1B
Successful download: Rubrobacter xylanophilus DSM 9941
Downloading Thermobispora bispora DSM 43833
Successful download: Thioalkalimicrobium aerophilum AL3
Downloading [Eubacterium] eligens ATCC 27750
Successful download: Mesorhizobium loti MAFF303099
Downloading Thermacetogenium phaeum DSM 12270
Successful download: Rickettsia sibirica 246
Downloading Snodgrassella alvi wkB2
Successful download: Ilumatobacter coccineus YM16-304
Downloading Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Successful download: Thermosediminibacter oceani DSM 16646
Successful download: Wolbachia endosymbiont strain TRS of Brugia malayi
Downloading Roseburia hominis A2-183
Downloading Streptomyces violaceusniger Tu 4113
Successful download: Bacillus atrophaeus 1942
Downloading Klebsiella oxytoca E718
Successful download: Yersinia pestis biovar Microtus str. 91001
Downloading Bacteriovorax marinus SJ
Successful download: Sulfuritalea hydrogenivorans sk43H
Downloading Paenibacillus larvae subsp. larvae DSM 25430
Successful download: Planctomyces brasiliensis DSM 5305
Successful download: Phaeobacter inhibens DSM 17395
Downloading Colwellia psychrerythraea 34H
Downloading Flexistipes sinusarabici DSM 4947
Successful download: Shewanella baltica OS117
Downloading Haemophilus parainfluenzae T3T1
Successful download: Salinispora tropica CNB-440
Downloading Brachyspira intermedia PWS/A
Successful download: Nocardiopsis alba ATCC BAA-2165
Downloading Helicobacter cinaedi PAGU611
Successful download: Corynebacterium vitaeruminis DSM 20294
Successful download: Morganella morganii subsp. morganii KT
Downloading Roseibacterium elongatum DSM 19469
Downloading Acinetobacter calcoaceticus PHEA-2
Successful download: Paenibacillus sabinae T27
Downloading Sphingomonas wittichii RW1
Successful download: Marinomonas posidonica IVIA-Po-181
Successful download: Caldicellulosiruptor kristjanssonii I77R1B
Downloading Denitrovibrio acetiphilus DSM 12809
Downloading Bacteroides fragilis 638R
Successful download: [Eubacterium] eligens ATCC 27750
Downloading Streptococcus pyogenes NZ131
Successful download: Frankia alni ACN14a
Downloading Rubrivivax gelatinosus IL144
Successful download: Thermacetogenium phaeum DSM 12270
Downloading Pseudomonas mosselii SJ10
Successful download: Glaciecola psychrophila 170
Downloading Clostridium saccharobutylicum DSM 13864
Successful download: Pseudomonas balearica DSM 6083
Downloading Shigella boydii Sb227
Successful download: Snodgrassella alvi wkB2
Downloading Mahella australiensis 50-1 BON
Successful download: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Downloading Owenweeksia hongkongensis DSM 17368
Successful download: Mycobacterium indicus pranii MTCC 9506
Downloading Streptococcus gallolyticus UCN34
Successful download: Thermobispora bispora DSM 43833
Successful download: Xenorhabdus bovienii SS-2004
Downloading Thiomonas intermedia K12
Downloading Calothrix sp. PCC 6303
Successful download: Helicobacter cinaedi PAGU611
Successful download: Roseburia hominis A2-183
Downloading Streptococcus iniae SF1
Downloading Bdellovibrio exovorus JSS
Successful download: Xanthomonas campestris pv. vesicatoria str. 85-10
Downloading Streptococcus pseudopneumoniae IS7493
Successful download: Citrobacter freundii CFNIH1
Downloading Anaerococcus prevotii DSM 20548
Successful download: Saccharopolyspora erythraea NRRL 2338
Downloading Methylocella silvestris BL2
Successful download: Haemophilus parainfluenzae T3T1
Downloading Burkholderia cenocepacia HI2424
Successful download: Flexistipes sinusarabici DSM 4947
Downloading Streptococcus anginosus C238
Successful download: Fluviicola taffensis DSM 16823
Downloading Lactobacillus ruminis ATCC 27782
Successful download: Streptococcus pyogenes NZ131
Downloading Flexibacter litoralis DSM 6794
Successful download: Brachyspira intermedia PWS/A
Downloading Brucella abortus S19
Successful download: Paenibacillus larvae subsp. larvae DSM 25430
Downloading Clostridium baratii str. Sullivan
Successful download: Acinetobacter calcoaceticus PHEA-2
Downloading Rickettsia akari str. Hartford
Successful download: Bacteriovorax marinus SJ
Downloading Meiothermus silvanus DSM 9946
Successful download: Streptococcus iniae SF1
Downloading Blattabacterium sp. (Panesthia angustipennis spadica) str. BPAA
Successful download: Denitrovibrio acetiphilus DSM 12809
Downloading Haemophilus influenzae PittEE
Successful download: Klebsiella oxytoca E718
Downloading Kangiella koreensis DSM 16069
Successful download: Bdellovibrio exovorus JSS
Downloading Chlorobium luteolum DSM 273
Successful download: Anaerococcus prevotii DSM 20548
Downloading Alkalilimnicola ehrlichii MLHE-1
Successful download: Roseibacterium elongatum DSM 19469
Downloading Shimwellia blattae DSM 4481 = NBRC 105725
Successful download: Rubrivivax gelatinosus IL144
Downloading Porphyromonas gingivalis TDC60
Successful download: Lactobacillus ruminis ATCC 27782
Downloading Aeromonas media WS
Successful download: Streptococcus anginosus C238
Downloading Pseudoalteromonas haloplanktis TAC125
Successful download: Rickettsia akari str. Hartford
Downloading Rhodococcus pyridinivorans SB3094
Successful download: Streptococcus gallolyticus UCN34
Downloading Sphingobium japonicum UT26S
Successful download: Colwellia psychrerythraea 34H
Downloading Aromatoleum aromaticum EbN1
Successful download: Blattabacterium sp. (Panesthia angustipennis spadica) str. BPAA
Downloading Chlorobium chlorochromatii CaD3
Successful download: Mahella australiensis 50-1 BON
Downloading Bacillus pseudofirmus OF4
Successful download: Streptococcus pseudopneumoniae IS7493
Downloading Candidatus Tremblaya phenacola PAVE
Successful download: Shigella boydii Sb227
Downloading Serratia plymuthica RVH1
Successful download: Clostridium saccharobutylicum DSM 13864
Downloading Prevotella dentalis DSM 3688
Successful download: Sphingomonas wittichii RW1
Downloading Halothiobacillus neapolitanus c2
Successful download: Haemophilus influenzae PittEE
Successful download: Candidatus Tremblaya phenacola PAVE
Downloading Allochromatium vinosum DSM 180
Downloading Thermotoga caldifontis AZM44c09
Successful download: Owenweeksia hongkongensis DSM 17368
Downloading Phaeobacter gallaeciensis 2.10
Successful download: Clostridium baratii str. Sullivan
Downloading Arthrobacter phenanthrenivorans Sphe3
Successful download: Methylocella silvestris BL2
Downloading Acholeplasma laidlawii PG-8A
Successful download: Thiomonas intermedia K12
Downloading Verminephrobacter eiseniae EF01-2
Successful download: Chlorobium luteolum DSM 273
Downloading Gramella forsetii KT0803
Successful download: Meiothermus silvanus DSM 9946
Downloading Francisella cf. tularensis subsp. novicida 3523
Successful download: Serratia plymuthica RVH1
Downloading Rickettsia prowazekii str. GvV257
Successful download: Kangiella koreensis DSM 16069
Downloading Thermovirga lienii DSM 17291
Successful download: Bacteroides fragilis 638R
Downloading Mycoplasma hyopneumoniae 7448
Successful download: Brucella abortus S19
Downloading Campylobacter curvus 525.92
Successful download: Flexibacter litoralis DSM 6794
Downloading Cellvibrio japonicus Ueda107
Successful download: Thermotoga caldifontis AZM44c09
Downloading Rickettsia rickettsii str. Hino
Successful download: Mycobacterium neoaurum VKM Ac-1815D
Downloading Aequorivita sublithincola DSM 14238
Successful download: Porphyromonas gingivalis TDC60
Downloading Enterobacter asburiae LF7a
Successful download: Chlorobium chlorochromatii CaD3
Downloading Carboxydothermus hydrogenoformans Z-2901
Successful download: Mycoplasma hyopneumoniae 7448
Downloading Bradyrhizobium diazoefficiens USDA 110
Successful download: Rickettsia prowazekii str. GvV257
Downloading Prevotella denticola F0289
Successful download: Halothiobacillus neapolitanus c2
Downloading Sulfuricurvum kujiense DSM 16994
Successful download: Pseudomonas mosselii SJ10
Successful download: Acholeplasma laidlawii PG-8A
Downloading Vibrio parahaemolyticus RIMD 2210633
Downloading Candidatus Sulcia muelleri PSPU
Successful download: Francisella cf. tularensis subsp. novicida 3523
Downloading Syntrophobotulus glycolicus DSM 8271
Successful download: Rickettsia rickettsii str. Hino
Successful download: Candidatus Sulcia muelleri PSPU
Downloading [Clostridium] stercorarium subsp. stercorarium DSM 8532
Downloading Roseobacter denitrificans OCh 114
Successful download: Alkalilimnicola ehrlichii MLHE-1
Downloading Enterococcus faecalis D32
Successful download: Calothrix sp. PCC 6303
Downloading Dechlorosoma suillum PS
Successful download: Sphingobium japonicum UT26S
Downloading Gemmatimonas aurantiaca T-27
Successful download: Campylobacter curvus 525.92
Downloading Echinicola vietnamensis DSM 17526
Successful download: Prevotella dentalis DSM 3688
Downloading Listeria welshimeri serovar 6b str. SLCC5334
Successful download: Streptomyces violaceusniger Tu 4113
Downloading Bradyrhizobium oligotrophicum S58
Successful download: Pseudoalteromonas haloplanktis TAC125
Downloading Lysinibacillus sphaericus C3-41
Successful download: Aeromonas media WS
Downloading Symbiobacterium thermophilum IAM 14863
Successful download: Thermovirga lienii DSM 17291
Downloading Staphylococcus pasteuri SP1
Successful download: Shimwellia blattae DSM 4481 = NBRC 105725
Downloading Staphylococcus warneri SG1
Successful download: Allochromatium vinosum DSM 180
Downloading Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Successful download: Aromatoleum aromaticum EbN1
Downloading Conexibacter woesei DSM 14684
Successful download: Arthrobacter phenanthrenivorans Sphe3
Successful download: Bacillus pseudofirmus OF4
Downloading Mycoplasma haemofelis str. Langford 1
Downloading Pseudomonas fluorescens F113
Successful download: Phaeobacter gallaeciensis 2.10
Downloading Thermoanaerobacterium xylanolyticum LX-11
Successful download: Prevotella denticola F0289
Downloading Listeria ivanovii subsp. ivanovii
Successful download: Gramella forsetii KT0803
Downloading Pediococcus pentosaceus ATCC 25745
Successful download: Carboxydothermus hydrogenoformans Z-2901
Downloading Brucella ovis ATCC 25840
Successful download: Aequorivita sublithincola DSM 14238
Downloading Komagataeibacter medellinensis NBRC 3288
Successful download: Sulfuricurvum kujiense DSM 16994
Downloading Oenococcus oeni PSU-1
Successful download: Enterobacter asburiae LF7a
Downloading Pseudomonas protegens Pf-5
Successful download: Burkholderia cenocepacia HI2424
Downloading Rahnella aquatilis HX2
Successful download: Enterococcus faecalis D32
Successful download: Staphylococcus pasteuri SP1
Downloading Mannheimia haemolytica USDA-ARS-USMARC-185
Downloading Pelobacter carbinolicus DSM 2380
Successful download: [Clostridium] stercorarium subsp. stercorarium DSM 8532
Successful download: Verminephrobacter eiseniae EF01-2
Downloading Geobacillus thermodenitrificans NG80-2
Downloading Mycoplasma mobile 163K
Successful download: Staphylococcus warneri SG1
Downloading Halothermothrix orenii H 168
Successful download: Mycoplasma haemofelis str. Langford 1
Downloading Muricauda ruestringensis DSM 13258
Successful download: Listeria welshimeri serovar 6b str. SLCC5334
Downloading Chroococcidiopsis thermalis PCC 7203
Successful download: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Downloading Shewanella pealeana ATCC 700345
Successful download: Roseobacter denitrificans OCh 114
Downloading Cellulophaga baltica NN016038
Successful download: Pediococcus pentosaceus ATCC 25745
Downloading Bacillus anthracis str. H9401
Successful download: Oenococcus oeni PSU-1
Downloading Glaciecola nitratireducens FR1064
Successful download: Mycoplasma mobile 163K
Downloading Spirochaeta smaragdinae DSM 11293
Successful download: Syntrophobotulus glycolicus DSM 8271
Downloading Enterococcus hirae ATCC 9790
Successful download: Vibrio parahaemolyticus RIMD 2210633
Downloading Exiguobacterium antarcticum B7
Successful download: Rhodococcus pyridinivorans SB3094
Downloading Runella slithyformis DSM 19594
Successful download: Dechlorosoma suillum PS
Downloading Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
Successful download: Lysinibacillus sphaericus C3-41
Downloading Thermincola potens JR
Successful download: Thermoanaerobacterium xylanolyticum LX-11
Downloading Burkholderia xenovorans LB400
Successful download: Echinicola vietnamensis DSM 17526
Downloading Methylobacterium nodulans ORS 2060
Successful download: Gemmatimonas aurantiaca T-27
Successful download: Komagataeibacter medellinensis NBRC 3288
Successful download: Listeria ivanovii subsp. ivanovii
Downloading Streptococcus mitis B6
Downloading Paenibacillus mucilaginosus KNP414
Downloading Streptococcus pasteurianus ATCC 43144
Successful download: Baumannia cicadellinicola str. Hc (Homalodisca coagulata)
Downloading Stackebrandtia nassauensis DSM 44728
Successful download: Cellvibrio japonicus Ueda107
Downloading Idiomarina loihiensis GSL 199
Successful download: Geobacillus thermodenitrificans NG80-2
Downloading Ehrlichia muris AS145
Successful download: Mannheimia haemolytica USDA-ARS-USMARC-185
Downloading Microlunatus phosphovorus NM-1
Successful download: Symbiobacterium thermophilum IAM 14863
Downloading Alicycliphilus denitrificans BC
Successful download: Brucella ovis ATCC 25840
Downloading Clostridium cellulovorans 743B
Successful download: Bradyrhizobium diazoefficiens USDA 110
Downloading Riemerella anatipestifer RA-GD
Successful download: Halothermothrix orenii H 168
Downloading Staphylococcus aureus subsp. aureus T0131
Successful download: Enterococcus hirae ATCC 9790
Downloading Nitrosococcus halophilus Nc 4
Successful download: Pseudomonas fluorescens F113
Successful download: Pelobacter carbinolicus DSM 2380
Successful download: Rahnella aquatilis HX2
Downloading Propionibacterium acidipropionici ATCC 4875
Downloading Candidatus Hepatoplasma crinochetorum Av
Downloading Corynebacterium urealyticum DSM 7109
Successful download: Ehrlichia muris AS145
Downloading Synechocystis sp. PCC 6803 substr. PCC-P
Successful download: Bradyrhizobium oligotrophicum S58
Downloading Marinomonas mediterranea MMB-1
Successful download: Streptococcus pasteurianus ATCC 43144
Downloading Desulfurispirillum indicum S5
Successful download: Streptococcus mitis B6
Downloading Rothia mucilaginosa DY-18
Successful download: Conexibacter woesei DSM 14684
Downloading Clostridium saccharoperbutylacetonicum N1-4(HMT)
Successful download: Exiguobacterium antarcticum B7
Downloading Vibrio vulnificus MO6-24/O
Successful download: Candidatus Hepatoplasma crinochetorum Av
Downloading Bacillus weihenstephanensis KBAB4
Successful download: Thermincola potens JR
Downloading Geodermatophilus obscurus DSM 43160
Successful download: Bacillus anthracis str. H9401
Successful download: Idiomarina loihiensis GSL 199
Downloading Candidatus Kinetoplastibacterium oncopeltii TCC290E
Downloading Prevotella sp. oral taxon 299 str. F0039
Successful download: Riemerella anatipestifer RA-GD
Downloading Sphingopyxis alaskensis RB2256
Successful download: Spirochaeta smaragdinae DSM 11293
Downloading Brachyspira pilosicoli 95/1000
Successful download: Pseudomonas protegens Pf-5
Downloading [Clostridium] saccharolyticum WM1
Successful download: Prevotella sp. oral taxon 299 str. F0039
Downloading Tetragenococcus halophilus NBRC 12172
Successful download: Muricauda ruestringensis DSM 13258
Downloading Helicobacter mustelae 12198
Successful download: Shewanella pealeana ATCC 700345
Downloading Rhodobacter sphaeroides 2.4.1
Successful download: Candidatus Kinetoplastibacterium oncopeltii TCC290E
Downloading Providencia stuartii MRSN 2154
Successful download: Chroococcidiopsis thermalis PCC 7203
Successful download: Runella slithyformis DSM 19594
Downloading Cellulomonas fimi ATCC 484
Downloading Microcystis aeruginosa NIES-843
Successful download: Cellulophaga baltica NN016038
Downloading Candidatus Blochmannia vafer str. BVAF
Successful download: Rothia mucilaginosa DY-18
Downloading Acidaminococcus fermentans DSM 20731
Successful download: Staphylococcus aureus subsp. aureus T0131
Downloading Brucella microti CCM 4915
Successful download: Corynebacterium urealyticum DSM 7109
Downloading Thermus thermophilus HB8
Successful download: Glaciecola nitratireducens FR1064
Downloading Citrobacter rodentium ICC168
Successful download: Propionibacterium acidipropionici ATCC 4875
Downloading Wolbachia endosymbiont wPip_Mol of Culex molestus
Successful download: Synechocystis sp. PCC 6803 substr. PCC-P
Downloading Phenylobacterium zucineum HLK1
Successful download: Candidatus Blochmannia vafer str. BVAF
Downloading Kytococcus sedentarius DSM 20547
Successful download: Desulfurispirillum indicum S5
Successful download: Nitrosococcus halophilus Nc 4
Downloading Streptomyces albus J1074
Downloading Dichelobacter nodosus VCS1703A
Successful download: Brachyspira pilosicoli 95/1000
Downloading Ornithobacterium rhinotracheale ORT-UMN 88
Successful download: Alicycliphilus denitrificans BC
Downloading Corynebacterium variabile DSM 44702
Successful download: Marinomonas mediterranea MMB-1
Downloading Selenomonas ruminantium subsp. lactilytica TAM6421
Successful download: Microlunatus phosphovorus NM-1
Downloading Pseudomonas brassicacearum subsp. brassicacearum NFM421
Successful download: Clostridium cellulovorans 743B
Downloading Thermus scotoductus SA-01
Successful download: Tetragenococcus halophilus NBRC 12172
Downloading Chlamydia trachomatis L3/404/LN
Successful download: Rhodobacter sphaeroides 2.4.1
Downloading Pseudomonas syringae pv. tomato str. DC3000
Successful download: Wolbachia endosymbiont wPip_Mol of Culex molestus
Downloading Truepera radiovictrix DSM 17093
Successful download: Helicobacter mustelae 12198
Downloading Rickettsia parkeri str. Portsmouth
Successful download: Sphingopyxis alaskensis RB2256
Downloading Anaerobaculum mobile DSM 13181
Successful download: Dichelobacter nodosus VCS1703A
Downloading Thioalkalivibrio nitratireducens DSM 14787
Successful download: Clostridium saccharoperbutylacetonicum N1-4(HMT)
Downloading Rothia dentocariosa ATCC 17931
Successful download: Chlamydia trachomatis L3/404/LN
Downloading Dechloromonas aromatica RCB
Successful download: Acidaminococcus fermentans DSM 20731
Downloading Rickettsia rhipicephali str. 3-7-female6-CWPP
Successful download: Stackebrandtia nassauensis DSM 44728
Downloading Brucella ceti TE28753-12
Successful download: Vibrio vulnificus MO6-24/O
Downloading Actinosynnema mirum DSM 43827
Successful download: Bacillus weihenstephanensis KBAB4
Downloading Acinetobacter baumannii BJAB07104
Successful download: Kytococcus sedentarius DSM 20547
Downloading Marinobacter adhaerens HP15
Successful download: Geodermatophilus obscurus DSM 43160
Downloading Methylotenera versatilis 301
Successful download: Paenibacillus mucilaginosus KNP414
Downloading Pseudomonas cichorii JBC1
Successful download: Rickettsia parkeri str. Portsmouth
Downloading Gloeobacter violaceus PCC 7421
Successful download: Thermus thermophilus HB8
Downloading Mycobacterium marinum M
Successful download: Brucella microti CCM 4915
Downloading Corynebacterium terpenotabidum Y-11
Successful download: Burkholderia xenovorans LB400
Downloading Hyphomicrobium nitrativorans NL23
Successful download: Phenylobacterium zucineum HLK1
Downloading Gallionella capsiferriformans ES-2
Successful download: Corynebacterium variabile DSM 44702
Downloading Cellulophaga lytica DSM 7489
Successful download: Methylobacterium nodulans ORS 2060
Downloading Erwinia tasmaniensis Et1/99
Successful download: Rickettsia rhipicephali str. 3-7-female6-CWPP
Downloading Sebaldella termitidis ATCC 33386
Successful download: Providencia stuartii MRSN 2154
Downloading Clostridium tetani E88
Successful download: Cellulomonas fimi ATCC 484
Downloading Bacillus megaterium NBRC 15308 = ATCC 14581
Successful download: [Clostridium] saccharolyticum WM1
Successful download: Ornithobacterium rhinotracheale ORT-UMN 88
Downloading Streptococcus parasanguinis ATCC 15912
Downloading Geobacter uraniireducens Rf4
Successful download: Selenomonas ruminantium subsp. lactilytica TAM6421
Downloading Pseudomonas chlororaphis subsp. aurantiaca
Successful download: Thermus scotoductus SA-01
Downloading Pectobacterium atrosepticum SCRI1043
Successful download: Rothia dentocariosa ATCC 17931
Downloading Spiroplasma taiwanense CT-1
Successful download: Anaerobaculum mobile DSM 13181
Downloading Neorickettsia helminthoeca str. Oregon
Successful download: Truepera radiovictrix DSM 17093
Downloading Pseudomonas syringae pv. phaseolicola 1448A
Successful download: Microcystis aeruginosa NIES-843
Downloading Saccharophagus degradans 2-40
Successful download: Thioalkalivibrio nitratireducens DSM 14787
Downloading Dyadobacter fermentans DSM 18053
Successful download: Neorickettsia helminthoeca str. Oregon
Downloading Bifidobacterium dentium Bd1
Successful download: Corynebacterium terpenotabidum Y-11
Downloading Rickettsia conorii str. Malish 7
Successful download: Brucella ceti TE28753-12
Successful download: Methylotenera versatilis 301
Downloading Chromohalobacter salexigens DSM 3043
Downloading Rickettsia japonica YH
Successful download: Spiroplasma taiwanense CT-1
Downloading Starkeya novella DSM 506
Successful download: Acinetobacter baumannii BJAB07104
Downloading Spiroplasma culicicola AES-1
Successful download: Pseudomonas brassicacearum subsp. brassicacearum NFM421
Downloading Shewanella woodyi ATCC 51908
Successful download: Dechloromonas aromatica RCB
Downloading Gluconobacter oxydans DSM 3504
Successful download: Streptococcus parasanguinis ATCC 15912
Downloading Erwinia pyrifoliae Ep1/96
Successful download: Marinobacter adhaerens HP15
Downloading Sulfurimonas autotrophica DSM 16294
Successful download: Streptomyces albus J1074
Downloading Burkholderia rhizoxinica HKI 454
Successful download: Clostridium tetani E88
Downloading Aquifex aeolicus VF5
Successful download: Gloeobacter violaceus PCC 7421
Downloading Pantoea ananatis PA13
Successful download: Rickettsia japonica YH
Downloading Novosphingobium aromaticivorans DSM 12444
Successful download: Cellulophaga lytica DSM 7489
Downloading Shewanella sediminis HAW-EB3
Successful download: Gallionella capsiferriformans ES-2
Downloading Desulfovibrio alaskensis G20
Successful download: Spiroplasma culicicola AES-1
Downloading Halorhodospira halophila SL1
Successful download: Rickettsia conorii str. Malish 7
Downloading Candidatus Solibacter usitatus Ellin6076
Successful download: Citrobacter rodentium ICC168
Downloading Weissella koreensis KACC 15510
Successful download: Hyphomicrobium nitrativorans NL23
Downloading Bacillus coagulans DSM 1 = ATCC 7050
Successful download: Bifidobacterium dentium Bd1
Downloading Halanaerobium praevalens DSM 2228
Successful download: Pseudomonas cichorii JBC1
Downloading Brachybacterium faecium DSM 4810
Successful download: Sebaldella termitidis ATCC 33386
Downloading Propionibacterium avidum 44067
Successful download: Mycobacterium marinum M
Downloading Leuconostoc gelidum JB7
Successful download: Saccharophagus degradans 2-40
Downloading Streptococcus suis 6407
Successful download: Sulfurimonas autotrophica DSM 16294
Downloading Strawberry lethal yellows phytoplasma (CPA) str. NZSb11
Successful download: Aquifex aeolicus VF5
Downloading Chloroflexus aggregans DSM 9485
Successful download: Weissella koreensis KACC 15510
Successful download: Burkholderia rhizoxinica HKI 454
Downloading Listonella anguillarum M3
Downloading Trueperella pyogenes TP8
Successful download: Erwinia tasmaniensis Et1/99
Downloading Corynebacterium aurimucosum ATCC 700975
Successful download: Chromohalobacter salexigens DSM 3043
Downloading Leptospira borgpetersenii serovar Hardjo-bovis str. L550
Successful download: Pseudomonas syringae pv. phaseolicola 1448A
Downloading Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Successful download: Erwinia pyrifoliae Ep1/96
Downloading Mycoplasma leachii PG50
Successful download: Geobacter uraniireducens Rf4
Downloading Desulfovibrio salexigens DSM 2638
Successful download: Leuconostoc gelidum JB7
Downloading Lactobacillus salivarius CECT 5713
Successful download: Actinosynnema mirum DSM 43827
Downloading Mycobacterium canettii CIPT 140010059
Successful download: Halorhodospira halophila SL1
Downloading Legionella oakridgensis ATCC 33761 = DSM 21215
Successful download: Pseudomonas syringae pv. tomato str. DC3000
Downloading Thiomicrospira crunogena XCL-2
Successful download: Dyadobacter fermentans DSM 18053
Downloading Pseudoxanthomonas spadix BD-a59
Successful download: Pseudomonas chlororaphis subsp. aurantiaca
Downloading Mycobacterium vanbaalenii PYR-1
Successful download: Propionibacterium avidum 44067
Downloading Bartonella bacilliformis KC583
Successful download: Novosphingobium aromaticivorans DSM 12444
Downloading Thermovibrio ammonificans HB-1
Successful download: Strawberry lethal yellows phytoplasma (CPA) str. NZSb11
Downloading Bacillus cellulosilyticus DSM 2522
Successful download: Streptococcus suis 6407
Downloading Acetohalobium arabaticum DSM 5501
Successful download: Desulfovibrio alaskensis G20
Downloading Thermotoga maritima MSB8
Successful download: Gluconobacter oxydans DSM 3504
Downloading Tolumonas auensis DSM 9187
Successful download: Pantoea ananatis PA13
Downloading Serratia symbiotica str. 'Cinara cedri'
Successful download: Brachybacterium faecium DSM 4810
Downloading Enterococcus faecium NRRL B-2354
Successful download: Trueperella pyogenes TP8
Downloading Chlorobium tepidum TLS
Successful download: Mycoplasma leachii PG50
Downloading Brucella pinnipedialis B2/94
Successful download: Pectobacterium atrosepticum SCRI1043
Successful download: Starkeya novella DSM 506
Downloading Cyanobacterium stanieri PCC 7202
Downloading Bifidobacterium animalis subsp. lactis ATCC 27673
Successful download: Corynebacterium aurimucosum ATCC 700975
Downloading Desulfomicrobium baculatum DSM 4028
Successful download: Shewanella woodyi ATCC 51908
Downloading Campylobacter fetus subsp. venerealis cfvi03/293
Successful download: Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Downloading Methylibium petroleiphilum PM1
Successful download: Lactobacillus salivarius CECT 5713
Downloading Thermodesulfobacterium commune DSM 2178
Successful download: Halanaerobium praevalens DSM 2228
Downloading Lactobacillus rhamnosus Lc 705
Successful download: Shewanella sediminis HAW-EB3
Downloading Ehrlichia canis str. Jake
Successful download: Bacillus coagulans DSM 1 = ATCC 7050
Downloading Rickettsia canadensis str. McKiel
Successful download: Bacillus megaterium NBRC 15308 = ATCC 14581
Downloading Segniliparus rotundus DSM 44985
Successful download: Serratia symbiotica str. 'Cinara cedri'
Downloading Borrelia turicatae 91E135
Successful download: Thiomicrospira crunogena XCL-2
Downloading Streptomyces scabiei 87.22
Successful download: Thermotoga maritima MSB8
Downloading Gordonia bronchialis DSM 43247
Successful download: Thermovibrio ammonificans HB-1
Downloading Meiothermus ruber DSM 1279
Successful download: Chloroflexus aggregans DSM 9485
Successful download: Leptospira borgpetersenii serovar Hardjo-bovis str. L550
Downloading Thalassolituus oleivorans MIL-1
Downloading Lactobacillus brevis ATCC 367
Successful download: Listonella anguillarum M3
Downloading Deinococcus radiodurans R1
Successful download: Bartonella bacilliformis KC583
Downloading Actinobacillus succinogenes 130Z
Successful download: Bifidobacterium animalis subsp. lactis ATCC 27673
Successful download: Campylobacter fetus subsp. venerealis cfvi03/293
Downloading Thermoanaerobacter pseudethanolicus ATCC 33223
Downloading Neorickettsia risticii str. Illinois
Successful download: Legionella oakridgensis ATCC 33761 = DSM 21215
Downloading Turneriella parva DSM 21527
Successful download: Borrelia turicatae 91E135
Downloading Propionibacterium propionicum F0230a
Successful download: Acetohalobium arabaticum DSM 5501
Downloading Mycoplasma hyorhinis SK76
Successful download: Rickettsia canadensis str. McKiel
Downloading Acidaminococcus intestini RyC-MR95
Successful download: Pseudoxanthomonas spadix BD-a59
Downloading Corynebacterium falsenii DSM 44353
Successful download: Ehrlichia canis str. Jake
Downloading Desulfotomaculum acetoxidans DSM 771
Successful download: Thermodesulfobacterium commune DSM 2178
Downloading Bacillus bombysepticus str. Wang
Successful download: Chlorobium tepidum TLS
Downloading Asticcacaulis excentricus CB 48
Successful download: Desulfovibrio salexigens DSM 2638
Downloading Borrelia afzelii Tom3107
Successful download: Tolumonas auensis DSM 9187
Downloading Thioflavicoccus mobilis 8321
Successful download: Brucella pinnipedialis B2/94
Downloading Thioalkalivibrio thiocyanoxidans ARh 4
Successful download: Cyanobacterium stanieri PCC 7202
Downloading Desulfovibrio africanus str. Walvis Bay
Successful download: Mycobacterium canettii CIPT 140010059
Downloading Candidatus Cloacimonas acidaminovorans str. Evry
Successful download: Neorickettsia risticii str. Illinois
Downloading Haliscomenobacter hydrossis DSM 1100
Successful download: Mycoplasma hyorhinis SK76
Downloading Myxococcus xanthus DK 1622
Successful download: Lactobacillus rhamnosus Lc 705
Downloading Solitalea canadensis DSM 3403
Successful download: Enterococcus faecium NRRL B-2354
Downloading Waddlia chondrophila WSU 86-1044
Successful download: Lactobacillus brevis ATCC 367
Downloading Mycobacterium chubuense NBB4
Successful download: Methylibium petroleiphilum PM1
Downloading Lachnoclostridium phytofermentans ISDg
Successful download: Desulfomicrobium baculatum DSM 4028
Downloading Deinococcus geothermalis DSM 11300
Successful download: Actinobacillus succinogenes 130Z
Successful download: Borrelia afzelii Tom3107
Downloading Candidatus Portiera aleyrodidarum MED (Bemisia tabaci)
Downloading Streptococcus oligofermentans AS 1.3089
Successful download: Segniliparus rotundus DSM 44985
Downloading Rickettsia montanensis str. OSU 85-930
Successful download: Candidatus Solibacter usitatus Ellin6076
Downloading Candidatus Amoebophilus asiaticus 5a2
Successful download: Bacillus cellulosilyticus DSM 2522
Downloading Streptomyces collinus Tu 365
Successful download: Acidaminococcus intestini RyC-MR95
Downloading Campylobacter coli RM1875
Successful download: Candidatus Portiera aleyrodidarum MED (Bemisia tabaci)
Downloading Geobacter lovleyi SZ
Successful download: Meiothermus ruber DSM 1279
Downloading Actinoplanes friuliensis DSM 7358
Successful download: Corynebacterium falsenii DSM 44353
Successful download: Deinococcus radiodurans R1
Downloading Legionella longbeachae NSW150
Downloading Burkholderia phenoliruptrix BR3459a
Successful download: Propionibacterium propionicum F0230a
Downloading Magnetospirillum gryphiswaldense MSR-1 v2
Successful download: Candidatus Cloacimonas acidaminovorans str. Evry
Downloading Clostridium perfringens str. 13
Successful download: Thalassolituus oleivorans MIL-1
Downloading [Bacillus] selenitireducens MLS10
Successful download: Waddlia chondrophila WSU 86-1044
Downloading Bifidobacterium kashiwanohense PV20-2
Successful download: Rickettsia montanensis str. OSU 85-930
Downloading Nitrosomonas eutropha C91
Successful download: Mycobacterium vanbaalenii PYR-1
Downloading Sulfurospirillum multivorans DSM 12446
Successful download: Streptococcus oligofermentans AS 1.3089
Successful download: Thermoanaerobacter pseudethanolicus ATCC 33223
Downloading Bifidobacterium breve 689b
Downloading Parachlamydia acanthamoebae UV-7
Successful download: Candidatus Amoebophilus asiaticus 5a2
Downloading Enterococcus casseliflavus EC20
Successful download: Desulfotomaculum acetoxidans DSM 771
Downloading Brachyspira murdochii DSM 12563
Successful download: Thioflavicoccus mobilis 8321
Downloading Desulfovibrio magneticus RS-1
Successful download: Asticcacaulis excentricus CB 48
Downloading Kosmotoga olearia TBF 19.5.1
Successful download: Turneriella parva DSM 21527
Downloading Candidatus Liberibacter americanus str. Sao Paulo
Successful download: Gordonia bronchialis DSM 43247
Downloading Mycobacterium smegmatis JS623
Successful download: Thioalkalivibrio thiocyanoxidans ARh 4
Downloading Hahella chejuensis KCTC 2396
Successful download: Campylobacter coli RM1875
Downloading Caldanaerobacter subterraneus subsp. tengcongensis MB4
Successful download: Bacillus bombysepticus str. Wang
Downloading Alcanivorax borkumensis SK2
Successful download: Desulfovibrio africanus str. Walvis Bay
Downloading Yersinia enterocolitica subsp. palearctica 105.5R(r)
Successful download: Bifidobacterium kashiwanohense PV20-2
Downloading Spiroplasma apis B31
Successful download: Solitalea canadensis DSM 3403
Downloading Halobacillus halophilus DSM 2266
Successful download: Candidatus Liberibacter americanus str. Sao Paulo
Downloading Agrobacterium fabrum str. C58
Successful download: Clostridium perfringens str. 13
Downloading Polymorphum gilvum SL003B-26A1
Successful download: Deinococcus geothermalis DSM 11300
Downloading Streptococcus gordonii str. Challis substr. CH1
Successful download: Bifidobacterium breve 689b
Downloading Candidatus Symbiobacter mobilis CR
Successful download: Nitrosomonas eutropha C91
Downloading Streptococcus equi subsp. zooepidemicus
Successful download: Geobacter lovleyi SZ
Downloading Candidatus Tremblaya princeps PCVAL
Successful download: Legionella longbeachae NSW150
Downloading Syntrophobacter fumaroxidans MPOB
Successful download: Lachnoclostridium phytofermentans ISDg
Downloading Streptococcus sanguinis SK36
Successful download: Parachlamydia acanthamoebae UV-7
Successful download: Candidatus Tremblaya princeps PCVAL
Successful download: Spiroplasma apis B31
Successful download: Sulfurospirillum multivorans DSM 12446
Successful download: Kosmotoga olearia TBF 19.5.1
Successful download: [Bacillus] selenitireducens MLS10
Successful download: Brachyspira murdochii DSM 12563
Successful download: Magnetospirillum gryphiswaldense MSR-1 v2
Successful download: Mycobacterium chubuense NBB4
Successful download: Enterococcus casseliflavus EC20
Successful download: Myxococcus xanthus DK 1622
Successful download: Streptococcus gordonii str. Challis substr. CH1
Successful download: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Successful download: Desulfovibrio magneticus RS-1
Successful download: Alcanivorax borkumensis SK2
Successful download: Streptococcus sanguinis SK36
Successful download: Yersinia enterocolitica subsp. palearctica 105.5R(r)
Successful download: Candidatus Symbiobacter mobilis CR
Successful download: Haliscomenobacter hydrossis DSM 1100
Successful download: Halobacillus halophilus DSM 2266
Successful download: Streptomyces collinus Tu 365
Successful download: Burkholderia phenoliruptrix BR3459a
Successful download: Polymorphum gilvum SL003B-26A1
Successful download: Syntrophobacter fumaroxidans MPOB
Successful download: Mycobacterium smegmatis JS623
Successful download: Agrobacterium fabrum str. C58
Successful download: Streptococcus equi subsp. zooepidemicus
Successful download: Hahella chejuensis KCTC 2396
Successful download: Streptomyces scabiei 87.22
Successful download: Actinoplanes friuliensis DSM 7358

In [233]:

    

!cd $genomeDir; \
    seqDB_tools NCBIprokaryoteTableFilter prok-arc_filt_rand.txt -t 30 -w -d prok-arc-genomes


    

    




Writing out fastas of each genome (fastas from GenBank accession numbers)...
Downloading Methanohalobium evestigatum Z-7303
Downloading Methanolacinia petrolearia DSM 11571
Downloading Thermoproteus uzoniensis 768-20
Downloading Methanosaeta concilii GP6
Downloading Aeropyrum pernix K1
Downloading Haloarcula marismortui ATCC 43049
Downloading Haloterrigena turkmenica DSM 5511
Downloading Methanosphaerula palustris E1-9c
Downloading Picrophilus torridus DSM 9790
Downloading Haloferax volcanii DS2
Downloading Pyrobaculum neutrophilum V24Sta
Downloading Haloquadratum walsbyi C23
Downloading Thermococcus onnurineus NA1
Downloading Methanopyrus kandleri AV19
Downloading Methanococcus aeolicus Nankai-3
Downloading Methanoculleus marisnigri JR1
Downloading Candidatus Nitrosopumilus koreensis AR1
Downloading Methanotorris igneus Kol 5
Downloading Natrinema pellirubrum DSM 15624
Downloading Methanocella arvoryzae MRE50
Downloading Palaeococcus pacificus DY20341
Downloading Methanocaldococcus vulcanius M7
Downloading Archaeoglobus sulfaticallidus PM70-1
Downloading Sulfolobus tokodaii str. 7
Downloading Ferroplasma acidarmanus fer1
Downloading Candidatus Methanomethylophilus alvus Mx1201
Downloading Hyperthermus butylicus DSM 5456
Downloading Vulcanisaeta moutnovskia 768-28
Downloading Methanomethylovorans hollandica DSM 15978
Downloading Methanococcus voltae A3
Successful download: Aeropyrum pernix K1
Downloading Thermogladius cellulolyticus 1633
Successful download: Hyperthermus butylicus DSM 5456
Downloading Methanococcoides burtonii DSM 6242
Successful download: Methanococcus aeolicus Nankai-3
Downloading Candidatus Nitrososphaera gargensis Ga9.2
Successful download: Thermoproteus uzoniensis 768-20
Downloading Pyrococcus horikoshii OT3
Successful download: Picrophilus torridus DSM 9790
Downloading Halorhabdus tiamatea SARL4B
Successful download: Methanopyrus kandleri AV19
Downloading Archaeoglobus veneficus SNP6
Successful download: Thermococcus onnurineus NA1
Downloading Thermococcus barophilus MP
Successful download: Candidatus Methanomethylophilus alvus Mx1201
Downloading Fervidicoccus fontis Kam940
Successful download: Palaeococcus pacificus DY20341
Successful download: Methanococcus voltae A3
Downloading Natronobacterium gregoryi SP2
Downloading Halalkalicoccus jeotgali B3
Successful download: Methanotorris igneus Kol 5
Downloading Natronomonas pharaonis DSM 2160
Successful download: Vulcanisaeta moutnovskia 768-28
Downloading Pyrobaculum calidifontis JCM 11548
Successful download: Methanocaldococcus vulcanius M7
Successful download: Methanohalobium evestigatum Z-7303
Downloading Thermococcus kodakarensis KOD1
Downloading Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1
Successful download: Thermogladius cellulolyticus 1633
Downloading Methanocaldococcus jannaschii DSM 2661
Successful download: Archaeoglobus sulfaticallidus PM70-1
Downloading Methanohalophilus mahii DSM 5219
Successful download: Pyrobaculum neutrophilum V24Sta
Downloading Methanothermococcus okinawensis IH1
Successful download: Candidatus Nitrosopumilus koreensis AR1
Downloading Thermoproteus tenax Kra 1
Successful download: Sulfolobus tokodaii str. 7
Downloading Sulfolobus acidocaldarius DSM 639
Successful download: Methanosaeta concilii GP6
Downloading Thermosphaera aggregans DSM 11486
Successful download: Fervidicoccus fontis Kam940
Successful download: Ferroplasma acidarmanus fer1
Downloading Methanosarcina barkeri str. Fusaro
Downloading Natronomonas moolapensis 8.8.11
Successful download: Methanolacinia petrolearia DSM 11571
Downloading Methanolobus psychrophilus R15
Successful download: Pyrococcus horikoshii OT3
Downloading Metallosphaera sedula DSM 5348
Successful download: Methanomethylovorans hollandica DSM 15978
Downloading Acidianus hospitalis W1
Successful download: Haloarcula marismortui ATCC 43049
Downloading Methanoregula formicica SMSP
Successful download: Haloterrigena turkmenica DSM 5511
Downloading Halogeometricum borinquense DSM 11551
Successful download: Methanocella arvoryzae MRE50
Downloading Methanocella paludicola SANAE
Successful download: Methanococcoides burtonii DSM 6242
Downloading Sulfolobus islandicus LAL14/1
Successful download: Haloferax volcanii DS2
Downloading Methanothermobacter thermautotrophicus str. Delta H
Successful download: Thermococcus barophilus MP
Successful download: Methanosphaerula palustris E1-9c
Downloading Thermofilum carboxyditrophus 1505
Downloading Archaeoglobus fulgidus DSM 4304
Successful download: Methanoculleus marisnigri JR1
Downloading Halomicrobium mukohataei DSM 12286
Successful download: Archaeoglobus veneficus SNP6
Downloading Halovivax ruber XH-70
Successful download: Haloquadratum walsbyi C23
Downloading Pyrobaculum islandicum DSM 4184
Successful download: Methanothermococcus okinawensis IH1
Successful download: Halorhabdus tiamatea SARL4B
Downloading Thermofilum pendens Hrk 5
Downloading Halorhabdus utahensis DSM 12940
Successful download: Thermococcus kodakarensis KOD1
Downloading Methanosalsum zhilinae DSM 4017
Successful download: Candidatus Nitrososphaera gargensis Ga9.2
Successful download: Methanocaldococcus jannaschii DSM 2661
Downloading Candidatus Korarchaeum cryptofilum OPF8
Downloading Methanosaeta thermophila PT
Successful download: Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1
Downloading Nitrososphaera viennensis EN76
Successful download: Thermoproteus tenax Kra 1
Downloading Candidatus Nitrososphaera evergladensis SR1
Successful download: Methanohalophilus mahii DSM 5219
Downloading Ignisphaera aggregans DSM 17230
Successful download: Pyrobaculum calidifontis JCM 11548
Downloading Methanocorpusculum labreanum Z
Successful download: Thermosphaera aggregans DSM 11486
Successful download: Halalkalicoccus jeotgali B3
Downloading Methanobrevibacter smithii ATCC 35061
Downloading Methanosphaera stadtmanae DSM 3091
Successful download: Sulfolobus acidocaldarius DSM 639
Downloading Pyrococcus yayanosii CH1
Successful download: Natronomonas pharaonis DSM 2160
Downloading Natrialba magadii ATCC 43099
Successful download: Natronobacterium gregoryi SP2
Successful download: Metallosphaera sedula DSM 5348
Downloading Thermoplasma volcanium GSS1
Downloading Halopiger xanaduensis SH-6
Successful download: Acidianus hospitalis W1
Downloading Methanosaeta harundinacea 6Ac
Successful download: Thermofilum carboxyditrophus 1505
Downloading Methanosarcina mazei Tuc01
Successful download: Methanolobus psychrophilus R15
Downloading Aeropyrum camini SY1 = JCM 12091
Successful download: Natrinema pellirubrum DSM 15624
Downloading Methanothermus fervidus DSM 2088
Successful download: Methanocella paludicola SANAE
Downloading Halorubrum lacusprofundi ATCC 49239
Successful download: Halogeometricum borinquense DSM 11551
Downloading Aciduliprofundum boonei T469
Successful download: Natronomonas moolapensis 8.8.11
Downloading Methanolinea tarda NOBI-1
Successful download: Thermofilum pendens Hrk 5
Downloading Methanocaldococcus fervens AG86
Successful download: Methanosphaera stadtmanae DSM 3091
Downloading Methanocella conradii HZ254
Successful download: Methanosarcina barkeri str. Fusaro
Successful download: Archaeoglobus fulgidus DSM 4304
Downloading Nitrosopumilus maritimus SCM1
Downloading Desulfurococcus fermentans DSM 16532
Successful download: Candidatus Korarchaeum cryptofilum OPF8
Downloading Methanocaldococcus infernus ME
Successful download: Ignisphaera aggregans DSM 17230
Downloading Halobacterium sp. NRC-1
Successful download: Methanosalsum zhilinae DSM 4017
Downloading Natronococcus occultus SP4
Successful download: Methanosaeta thermophila PT
Downloading Thermococcus gammatolerans EJ3
Successful download: Sulfolobus islandicus LAL14/1
Downloading Ignicoccus hospitalis KIN4/I
Successful download: Halomicrobium mukohataei DSM 12286
Downloading Pyrobaculum oguniense TE7
Successful download: Pyrobaculum islandicum DSM 4184
Downloading Nanoarchaeum equitans Kin4-M
Successful download: Pyrococcus yayanosii CH1
Downloading Staphylothermus hellenicus DSM 12710
Successful download: Halorhabdus utahensis DSM 12940
Successful download: Methanothermobacter thermautotrophicus str. Delta H
Downloading Metallosphaera cuprina Ar-4
Downloading Pyrobaculum arsenaticum DSM 13514
Successful download: Methanobrevibacter smithii ATCC 35061
Downloading Thermococcus litoralis DSM 5473
Successful download: Methanolinea tarda NOBI-1
Downloading Sulfolobus solfataricus P2
Successful download: Thermoplasma volcanium GSS1
Downloading Methanothermobacter marburgensis str. Marburg
Successful download: Halovivax ruber XH-70
Successful download: Nitrososphaera viennensis EN76
Downloading Archaeoglobus profundus DSM 5631
Successful download: Methanoregula formicica SMSP
Downloading Methanobrevibacter ruminantium M1
Downloading Methanococcus maripaludis X1
Successful download: Methanothermus fervidus DSM 2088
Downloading Methanoregula boonei 6A8
Successful download: Aeropyrum camini SY1 = JCM 12091
Downloading Methanococcus vannielii SB
Successful download: Aciduliprofundum boonei T469
Successful download: Methanosaeta harundinacea 6Ac
Downloading Acidilobus saccharovorans 345-15
Downloading Desulfurococcus kamchatkensis 1221n
Successful download: Nanoarchaeum equitans Kin4-M
Downloading Thermococcus sibiricus MM 739
Successful download: Methanocorpusculum labreanum Z
Downloading Methanospirillum hungatei JF-1
Successful download: Methanocaldococcus fervens AG86
Downloading Pyrobaculum aerophilum str. IM2
Successful download: Candidatus Nitrososphaera evergladensis SR1
Downloading Methanosarcina acetivorans C2A
Successful download: Desulfurococcus fermentans DSM 16532
Downloading Vulcanisaeta distributa DSM 14429
Successful download: Ignicoccus hospitalis KIN4/I
Downloading Halostagnicola larsenii XH-48
Successful download: Methanosarcina mazei Tuc01
Downloading Pyrococcus furiosus COM1
Successful download: Methanocaldococcus infernus ME
Successful download: Nitrosopumilus maritimus SCM1
Downloading Haloferax mediterranei ATCC 33500
Downloading Ferroglobus placidus DSM 10642
Successful download: Methanocella conradii HZ254
Downloading Pyrolobus fumarii 1A
Successful download: Halobacterium sp. NRC-1
Downloading Caldivirga maquilingensis IC-167
Successful download: Natrialba magadii ATCC 43099
Downloading Staphylothermus marinus F1
Successful download: Staphylothermus hellenicus DSM 12710
Downloading Haloarcula hispanica N601
Successful download: Halopiger xanaduensis SH-6
Downloading Caldisphaera lagunensis DSM 15908
Successful download: Methanothermobacter marburgensis str. Marburg
Successful download: Metallosphaera cuprina Ar-4
Successful download: Acidilobus saccharovorans 345-15
Successful download: Pyrobaculum arsenaticum DSM 13514
Successful download: Pyrobaculum oguniense TE7
Successful download: Thermococcus litoralis DSM 5473
Successful download: Desulfurococcus kamchatkensis 1221n
Successful download: Halorubrum lacusprofundi ATCC 49239
Successful download: Methanococcus maripaludis X1
Successful download: Methanococcus vannielii SB
Successful download: Archaeoglobus profundus DSM 5631
Successful download: Methanobrevibacter ruminantium M1
Successful download: Sulfolobus solfataricus P2
Successful download: Thermococcus sibiricus MM 739
Successful download: Thermococcus gammatolerans EJ3
Successful download: Pyrococcus furiosus COM1
Successful download: Pyrobaculum aerophilum str. IM2
Successful download: Methanoregula boonei 6A8
Successful download: Natronococcus occultus SP4
Successful download: Vulcanisaeta distributa DSM 14429
Successful download: Caldivirga maquilingensis IC-167
Successful download: Caldisphaera lagunensis DSM 15908
Successful download: Staphylothermus marinus F1
Successful download: Methanospirillum hungatei JF-1
Successful download: Pyrolobus fumarii 1A
Successful download: Ferroglobus placidus DSM 10642
Successful download: Halostagnicola larsenii XH-48
Successful download: Haloferax mediterranei ATCC 33500
Successful download: Methanosarcina acetivorans C2A
Successful download: Haloarcula hispanica N601

In [234]:

    

bacGenomeDir = os.path.join(genomeDir, 'prok-bac-genomes')


    

In [235]:

    

genomeLocalDir = os.path.join(workDir, 'genomes')

if not os.path.isdir(genomeLocalDir):
    os.mkdir(genomeLocalDir)


    

In [263]:

    

%%bash -s "$genomeLocalDir" "$bacGenomeDir"
# renaming sequences
cd $1

# making sure each sequence is unique
find $2 -name "*fasta" |\
    perl -pe 's/.+\///' | \
    xargs -P 24 -I % bash -c \
    "/var/seq_data/ncbi_db/genome/genome_rename.pl < $2/% > %"


    

In [ ]:

    

#find $2 -name "*fasta" |\
#    perl -pe 's/.+\///' | \
#    xargs -P 24 -I % bash -c \
#    "perl -pe 'if(/^>/){s/\W/_/g; s/^_*(.*?)_*\$/>\$1\n/; s/_complete_genome//; s/(.{79}).+/\$1/}' $2/% > %"


    

In [271]:

    

!printf "Number of bacterial genomes: "
!cd $genomeLocalDir; \
    find . -name "*fasta" | wc -l


    

    




Number of bacterial genomes: 1210

In [265]:

    

# list of all genomes files and their associated names
!cd $genomeLocalDir; \
    find . -name "*fasta" | \
    perl -pe 's/.+\///' | \
    perl -pe 's/(.+)(\.[^.]+)/\$1\t\$1\$2/' > genome_index.txt


    

In [266]:

    

# determining the largest genome
!cd $genomeLocalDir; \
    find . -name "*fasta" | \
    xargs -I % NY_misc fasta_info % --fn --tn --tl --tgc --sn --sl --sgc \
    > genome_info.txt


    

In [267]:

    

%%R -i genomeLocalDir

setwd(genomeLocalDir)

tbl = read.delim('genome_info.txt', sep='\t', header=FALSE)
colnames(tbl) = c('file_name', 'total_seqs', 'total_length', 'total_GC', 'seq_name', 'seq_length', 'seq_GC')


    

In [272]:

    

%%R -w 500 -h 350
# genome lengths
ggplot(tbl, aes(total_length)) +
    geom_histogram(binwidth=50000)


    

In [284]:

    

%%R
summary(tbl$total_length)


    

    






    Min.  1st Qu.   Median     Mean  3rd Qu.     Max. 
  112100  2206000  3473000  3729000  4865000 13030000 

In [273]:

    

%%R -w 500 -h 350
# genome GC
ggplot(tbl, aes(total_GC)) +
    geom_histogram(binwidth=1)


    

In [285]:

    

%%R
summary(tbl$total_GC)


    

    






   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
  13.54   37.89   49.03   49.69   62.36   74.91 

In [282]:

    

%%R -w 500 -h 350
# genome GC
ggplot(tbl, aes(total_GC)) +
    geom_density(fill='red', alpha=0.3) +
    scale_x_continuous(limits=c(10,90))


    

In [274]:

    

%%R -w 500 -h 350
# sequences per genome
ggplot(tbl, aes(total_seqs)) +
    geom_histogram(binwidth=1)


    

In [283]:

    

!cd $workDir; \
    $SIPSimExe indexGenomes genomes/genome_index.txt \
    --fp ./genomes/ --np 30 > genomes/index_log.txt


    

    




Indexing: "Kangiella_koreensis_DSM_16069"
Indexing: "Polymorphum_gilvum_SL003B-26A1"
Indexing: "_Cellvibrio_gilvus_ATCC_13127"
Indexing: "Croceibacter_atlanticus_HTCC2559"
Indexing: "Sulfuricurvum_kujiense_DSM_16994"
Indexing: "Eubacterium_rectale_ATCC_33656"
Indexing: "Nocardia_nova_SH22a"
Indexing: "Gordonia_polyisoprenivorans_VH2"
Indexing: "Aeromonas_salmonicida_subsp_salmonicida_A449"
Indexing: "Thermodesulfobium_narugense_DSM_14796"
Indexing: "Brevibacillus_brevis_NBRC_100599"
Indexing: "Spiroplasma_culicicola_AES-1"
Indexing: "Isoptericola_variabilis_225"
Indexing: "Oscillibacter_valericigenes_Sjm18-20"
Indexing: "Desulfocapsa_sulfexigens_DSM_10523"
Indexing: "Planktomarina_temperata_RCA23"
Indexing: "Marinithermus_hydrothermalis_DSM_14884"
Indexing: "Shewanella_baltica_OS117"
Indexing: "Desulfosporosinus_orientis_DSM_765"
Indexing: "Halobacillus_halophilus_DSM_2266"
Indexing: "Cronobacter_sakazakii_SP291"
Indexing: "Chromohalobacter_salexigens_DSM_3043"
Indexing: "Sulfurimonas_denitrificans_DSM_1251"
Indexing: "Bacillus_subtilis_PY79"
Indexing: "Desulfotomaculum_carboxydivorans_CO-1-SRB"
Indexing: "Edwardsiella_ictaluri_93-146"
Indexing: "Acidovorax_citrulli_AAC00-1"
Indexing: "Bartonella_grahamii_as4aup"
Indexing: "Mycoplasma_bovoculi_M165_69"
Indexing: "Clostridiales_genomosp_BVAB3_str_UPII9-5"
Indexing: "Crinalium_epipsammum_PCC_9333"
Indexing: "Herbaspirillum_seropedicae_SmR1"
Indexing: "Streptococcus_anginosus_C238"
Indexing: "Desulfosporosinus_acidiphilus_SJ4"
Indexing: "Thermincola_potens_JR"
Indexing: "Serratia_symbiotica_str_Cinara_cedri"
Indexing: "Caldicellulosiruptor_kristjanssonii_I77R1B"
Indexing: "Corynebacterium_casei_LMG_S-19264"
Indexing: "Mycobacterium_intracellulare_1956"
Indexing: "Stackebrandtia_nassauensis_DSM_44728"
Indexing: "Caldicellulosiruptor_saccharolyticus_DSM_8903"
Indexing: "Mycobacterium_abscessus_subsp_bolletii_50594"
Indexing: "Ignavibacterium_album_JCM_16511"
Indexing: "Erwinia_amylovora_LA636"
Indexing: "Pseudonocardia_dioxanivorans_CB1190"
Indexing: "Haemophilus_somnus_129PT"
Indexing: "Granulicella_mallensis_MP5ACTX8"
Indexing: "Campylobacter_coli_RM1875"
Indexing: "Vibrio_tasmaniensis_LGP32"
Indexing: "Kosmotoga_olearia_TBF_19_5_1"
Indexing: "Denitrovibrio_acetiphilus_DSM_12809"
Indexing: "Clostridium_perfringens_str_13"
Indexing: "Nocardia_farcinica_IFM_10152"
Indexing: "Myxococcus_stipitatus_DSM_14675"
Indexing: "Melissococcus_plutonius_DAT561"
Indexing: "Borrelia_garinii_PBi"
Indexing: "Geobacillus_thermoleovorans_CCB_US3_UF5"
Indexing: "Halomonas_elongata_DSM_2581"
Indexing: "Edwardsiella_piscicida_C07-087"
Indexing: "Leptospira_borgpetersenii_serovar_Hardjo-bovis_str_L550"
Indexing: "Nocardiopsis_alba_ATCC_BAA-2165"
Indexing: "Propionibacterium_avidum_44067"
Indexing: "Anaplasma_centrale_str_Israel"
Indexing: "Rickettsia_australis_str_Cutlack"
Indexing: "Candidatus_Liberibacter_asiaticus_str_Ishi-1"
Indexing: "Sulfurihydrogenibium_azorense_Az-Fu1"
Indexing: "Alicyclobacillus_acidocaldarius_subsp_acidocaldarius_DSM_446"
Indexing: "Dyadobacter_fermentans_DSM_18053"
Indexing: "Oceanithermus_profundus_DSM_14977"
Indexing: "Bifidobacterium_dentium_Bd1"
Indexing: "Dehalogenimonas_lykanthroporepellens_BL-DC-9"
Indexing: "Granulicella_tundricola_MP5ACTX9"
Indexing: "Candidatus_Zinderia_insecticola_CARI"
Indexing: "Desulfovibrio_africanus_str_Walvis_Bay"
Indexing: "Haemophilus_influenzae_PittEE"
Indexing: "Bradyrhizobium_diazoefficiens_USDA_110"
Indexing: "Ilumatobacter_coccineus_YM16-304"
Indexing: "Capnocytophaga_canimorsus_Cc5"
Indexing: "Lysinibacillus_sphaericus_C3-41"
Indexing: "Pseudomonas_mandelii_JR-1"
Indexing: "Aeromonas_veronii_B565"
Indexing: "Cronobacter_turicensis_z3032"
Indexing: "Corynebacterium_pseudotuberculosis_FRC41"
Indexing: "Vibrio_cholerae_MJ-1236"
Indexing: "Kocuria_rhizophila_DC2201"
Indexing: "Thermodesulfovibrio_yellowstonii_DSM_11347"
Indexing: "Desulfovibrio_magneticus_RS-1"
Indexing: "Rhodoferax_ferrireducens_T118"
Indexing: "Mycobacterium_avium_subsp_avium_2285_R"
Indexing: "Campylobacter_fetus_subsp_venerealis_cfvi03_293"
Indexing: "Vibrio_furnissii_NCTC_11218"
Indexing: "Cardinium_endosymbiont_cEper1_of_Encarsia_pergandiella"
Indexing: "Staphylococcus_haemolyticus_JCSC1435"
Indexing: "Mycoplasma_yeatsii_GM274B"
Indexing: "Candidatus_Solibacter_usitatus_Ellin6076"
Indexing: "Cyanobacterium_stanieri_PCC_7202"
Indexing: "Clostridium_cellulovorans_743B"
Indexing: "Lactobacillus_ruminis_ATCC_27782"
Indexing: "Mycobacterium_africanum_GM041182"
Indexing: "Tropheryma_whipplei_str_Twist"
Indexing: "Candidatus_Chloracidobacterium_thermophilum_B"
Indexing: "Nakamurella_multipartita_DSM_44233"
Indexing: "Bacillus_infantis_NRRL_B-14911"
Indexing: "Candidatus_Atelocyanobacterium_thalassa_isolate_ALOHA"
Indexing: "Fimbriimonas_ginsengisoli_Gsoil_348"
Indexing: "Clostridium_lentocellum_DSM_5427"
Indexing: "Aromatoleum_aromaticum_EbN1"
Indexing: "Cellulophaga_algicola_DSM_14237"
Indexing: "Bibersteinia_trehalosi_USDA-ARS-USMARC-189"
Indexing: "Beijerinckia_indica_subsp_indica_ATCC_9039"
Indexing: "Marivirga_tractuosa_DSM_4126"
Indexing: "Citrobacter_freundii_CFNIH1"
Indexing: "Pelotomaculum_thermopropionicum_SI"
Indexing: "Thermoanaerobacter_brockii_subsp_finnii_Ako-1"
Indexing: "Desulfitobacterium_hafniense_DCB-2"
Indexing: "Streptomyces_collinus_Tu_365"
Indexing: "Chlamydophila_abortus_S26_3"
Indexing: "Mycoplasma_californicum_HAZ160_1"
Indexing: "Lactobacillus_sanfranciscensis_TMW_1_1304"
Indexing: "Vibrio_tubiashii_ATCC_19109"
Indexing: "Candidatus_Carsonella_ruddii_PV"
Indexing: "Geobacillus_thermoglucosidasius_C56-YS93"
Indexing: "Mycoplasma_penetrans_HF-2"
Indexing: "Mycoplasma_crocodyli_MP145"
Indexing: "Chlamydophila_felis_Fe_C-56"
Indexing: "Slackia_heliotrinireducens_DSM_20476"
Indexing: "Escherichia_coli_1303"
Indexing: "Deferribacter_desulfuricans_SSM1"
Indexing: "Catenulispora_acidiphila_DSM_44928"
Indexing: "Bacteroides_vulgatus_ATCC_8482"
Indexing: "Bartonella_australis_Aust_NH1"
Indexing: "Streptococcus_gallolyticus_UCN34"
Indexing: "Gallionella_capsiferriformans_ES-2"
Indexing: "Glaciecola_psychrophila_170"
Indexing: "Selenomonas_ruminantium_subsp_lactilytica_TAM6421"
Indexing: "Mycobacterium_chubuense_NBB4"
Indexing: "Corynebacterium_resistens_DSM_45100"
Indexing: "Myxococcus_fulvus_HW-1"
Indexing: "Thermosipho_melanesiensis_BI429"
Indexing: "Mycobacterium_canettii_CIPT_140010059"
Indexing: "Mycoplasma_capricolum_subsp_capricolum_ATCC_27343"
Indexing: "Nautilia_profundicola_AmH"
Indexing: "Lactobacillus_acidophilus_NCFM"
Indexing: "Staphylococcus_saprophyticus_subsp_saprophyticus_ATCC_15305"
Indexing: "Caldicellulosiruptor_bescii_DSM_6725"
Indexing: "Chlamydia_muridarum_str_Nigg3_CMUT3-5"
Indexing: "Arthrobacter_phenanthrenivorans_Sphe3"
Indexing: "Desulfurella_acetivorans_A63"
Indexing: "Streptococcus_intermedius_JTH08"
Indexing: "Rhodomicrobium_vannielii_ATCC_17100"
Indexing: "Aggregatibacter_aphrophilus_NJ8700"
Indexing: "Thermotoga_thermarum_DSM_5069"
Indexing: "Candidatus_Ishikawaella_capsulata_Mpkobe"
Indexing: "Blattabacterium_sp_Cryptocercus_punctulatus_str_Cpu"
Indexing: "Vibrio_parahaemolyticus_RIMD_2210633"
Indexing: "Simkania_negevensis_Z"
Indexing: "Campylobacter_jejuni_subsp_jejuni_M1"
Indexing: "Chlorobium_luteolum_DSM_273"
Indexing: "Thermoanaerobacterium_saccharolyticum_JW_SL-YS485"
Indexing: "Cyanobium_gracile_PCC_6307"
Indexing: "Corynebacterium_glycinophilum_AJ_3170"
Indexing: "Chitinophaga_pinensis_DSM_2588"
Indexing: "Rhodobacter_capsulatus_SB_1003"
Indexing: "Aeromonas_media_WS"
Indexing: "Solibacillus_silvestris_StLB046"
Indexing: "Rhizobium_etli_bv_phaseoli_str_IE4803"
Indexing: "Clostridium_botulinum_202F"
Indexing: "Elusimicrobium_minutum_Pei191"
Indexing: "Nitrosococcus_oceani_ATCC_19707"
Indexing: "Neisseria_gonorrhoeae_FA_1090"
Indexing: "Niastella_koreensis_GR20-10"
Indexing: "Pseudomonas_stutzeri_DSM_4166"
Indexing: "Arcanobacterium_haemolyticum_DSM_20595"
Indexing: "Rickettsia_peacockii_str_Rustic"
Indexing: "Dickeya_dadantii_3937"
Indexing: "Waddlia_chondrophila_WSU_86-1044"
Indexing: "Oceanobacillus_iheyensis_HTE831"
Indexing: "Alkalilimnicola_ehrlichii_MLHE-1"
Indexing: "Desulfovibrio_aespoeensis_Aspo-2"
Indexing: "Allochromatium_vinosum_DSM_180"
Indexing: "Deinococcus_gobiensis_I-0"
Indexing: "Belliella_baltica_DSM_15883"
Indexing: "Marinobacter_hydrocarbonoclasticus_ATCC_49840"
Indexing: "Ethanoligenens_harbinense_YUAN-3"
Indexing: "Stigmatella_aurantiaca_DW4_3-1"
Indexing: "Blattabacterium_sp_Periplaneta_americana_str_BPLAN"
Indexing: "Deinococcus_proteolyticus_MRP"
Indexing: "Methylovorus_glucosetrophus_SIP3-4"
Indexing: "Salinispora_tropica_CNB-440"
Indexing: "Mycoplasma_hyopneumoniae_7448"
Indexing: "Pelagibacterium_halotolerans_B2"
Indexing: "Herpetosiphon_aurantiacus_DSM_785"
Indexing: "Legionella_oakridgensis_ATCC_33761_DSM_21215"
Indexing: "Ramlibacter_tataouinensis_TTB310"
Indexing: "Desulfobacca_acetoxidans_DSM_11109"
Indexing: "Saprospira_grandis_str_Lewin"
Indexing: "Enterococcus_faecalis_D32"
Indexing: "Moorella_thermoacetica_ATCC_39073"
Indexing: "Chlorobium_phaeovibrioides_DSM_265"
Indexing: "Amycolatopsis_orientalis_HCCB10007"
Indexing: "Xanthomonas_axonopodis_Xac29-1"
Indexing: "Terriglobus_saanensis_SP1PR4"
Indexing: "Microlunatus_phosphovorus_NM-1"
Indexing: "Rhodothermus_marinus_DSM_4252"
Indexing: "Komagataeibacter_xylinus_E25"
Indexing: "Streptococcus_gordonii_str_Challis_substr_CH1"
Indexing: "Phenylobacterium_zucineum_HLK1"
Indexing: "Sanguibacter_keddieii_DSM_10542"
Indexing: "Caldicellulosiruptor_owensensis_OL"
Indexing: "Xanthomonas_axonopodis_pv_citrumelo_F1"
Indexing: "Verminephrobacter_eiseniae_EF01-2"
Indexing: "Roseiflexus_castenholzii_DSM_13941"
Indexing: "Ralstonia_eutropha_JMP134"
Indexing: "Legionella_longbeachae_NSW150"
Indexing: "Halorhodospira_halophila_SL1"
Indexing: "Pseudomonas_poae_RE*1-1-14"
Indexing: "Saccharothrix_espanaensis_DSM_44229"
Indexing: "Staphylococcus_aureus_subsp_aureus_T0131"
Indexing: "Candidatus_Arthromitus_sp_SFB-mouse-Yit"
Indexing: "Spiroplasma_sabaudiense_Ar-1343"
Indexing: "Bartonella_tribocorum_CIP_105476"
Indexing: "Gramella_forsetii_KT0803"
Indexing: "Ehrlichia_canis_str_Jake"
Indexing: "Thermobifida_fusca_YX"
Indexing: "Streptococcus_pasteurianus_ATCC_43144"
Indexing: "Streptococcus_parauberis_NCFD_2020"
Indexing: "Mycoplasma_pneumoniae_309"
Indexing: "Thermosynechococcus_elongatus_BP-1"
Indexing: "Legionella_pneumophila_subsp_pneumophila_str_Philadelphia_1"
Indexing: "Acidothermus_cellulolyticus_11B"
Indexing: "Desulfotomaculum_gibsoniae_DSM_7213"
Indexing: "Listeria_ivanovii_subsp_ivanovii"
Indexing: "Aquifex_aeolicus_VF5"
Indexing: "Sphingomonas_sanxanigenens_DSM_19645_NX02"
Indexing: "Acidovorax_ebreus_TPSY"
Indexing: "Leuconostoc_gelidum_JB7"
Indexing: "Pelobacter_propionicus_DSM_2379"
Indexing: "Methylibium_petroleiphilum_PM1"
Indexing: "Flexibacter_litoralis_DSM_6794"
Indexing: "Borrelia_recurrentis_A1"
Indexing: "Shewanella_piezotolerans_WP3"
Indexing: "Escherichia_albertii_KF1"
Indexing: "Mycoplasma_gallisepticum_str_F"
Indexing: "Ralstonia_pickettii_12J"
Indexing: "Leisingera_methylohalidivorans_DSM_14336"
Indexing: "Treponema_pedis_str_T_A4"
Indexing: "Gloeobacter_violaceus_PCC_7421"
Indexing: "Solitalea_canadensis_DSM_3403"
Indexing: "Ehrlichia_chaffeensis_str_West_Paces"
Indexing: "Campylobacter_subantarcticus_LMG_24377"
Indexing: "Pseudomonas_mosselii_SJ10"
Indexing: "Serratia_proteamaculans_568"
Indexing: "Clostridium_pasteurianum_DSM_525_ATCC_6013"
Indexing: "Peptoclostridium_difficile_BI1"
Indexing: "Hydrogenobacter_thermophilus_TK-6"
Indexing: "Pantoea_vagans_C9-1"
Indexing: "Caldicellulosiruptor_kronotskyensis_2002"
Indexing: "Rhizobium_leguminosarum_bv_trifolii_WSM2304"
Indexing: "Rickettsia_philipii_str_364D"
Indexing: "Fervidobacterium_nodosum_Rt17-B1"
Indexing: "Pedobacter_saltans_DSM_12145"
Indexing: "Francisella_noatunensis_subsp_orientalis_str_Toba_04"
Indexing: "Cyclobacterium_marinum_DSM_745"
Indexing: "Geodermatophilus_obscurus_DSM_43160"
Indexing: "Thermoanaerobacter_mathranii_subsp_mathranii_str_A3"
Indexing: "Persephonella_marina_EX-H1"
Indexing: "Thermomicrobium_roseum_DSM_5159"
Indexing: "Methylobacillus_flagellatus_KT"
Indexing: "Clostridium_cellulolyticum_H10"
Indexing: "Streptococcus_suis_6407"
Indexing: "Vibrio_vulnificus_MO6-24_O"
Indexing: "Anaeromyxobacter_dehalogenans_2CP-C"
Indexing: "Streptococcus_agalactiae_COH1"
Indexing: "Bacillus_pseudofirmus_OF4"
Indexing: "Mycoplasma_putrefaciens_KS1"
Indexing: "Phaeobacter_gallaeciensis_2_10"
Indexing: "Shimwellia_blattae_DSM_4481_NBRC_105725"
Indexing: "Thermotoga_profunda_AZM34c06"
Indexing: "Aliivibrio_salmonicida_LFI1238"
Indexing: "Pseudomonas_syringae_pv_phaseolicola_1448A"
Indexing: "Salmonella_bongori_NCTC_12419"
Indexing: "Candidatus_Hodgkinia_cicadicola_Dsem"
Indexing: "Sulfobacillus_acidophilus_DSM_10332"
Indexing: "Brachyspira_murdochii_DSM_12563"
Indexing: "Porphyromonas_gingivalis_TDC60"
Indexing: "Roseburia_hominis_A2-183"
Indexing: "Ralstonia_eutropha_H16"
Indexing: "Sinorhizobium_medicae_WSM419"
Indexing: "Bacillus_weihenstephanensis_KBAB4"
Indexing: "Advenella_kashmirensis_WT001"
Indexing: "Microcystis_aeruginosa_NIES-843"
Indexing: "Marinomonas_mediterranea_MMB-1"
Indexing: "Bacillus_anthracis_str_H9401"
Indexing: "Lactobacillus_sakei_subsp_sakei_23K"
Indexing: "Bacillus_bombysepticus_str_Wang"
Indexing: "Mycoplasma_mobile_163K"
Indexing: "Actinobacillus_pleuropneumoniae_serovar_5b_str_L20"
Indexing: "Shewanella_frigidimarina_NCIMB_400"
Indexing: "Micrococcus_luteus_NCTC_2665"
Indexing: "Sodalis_glossinidius_str_morsitans"
Indexing: "Acetobacter_pasteurianus_IFO_3283-12"
Indexing: "Magnetospirillum_magneticum_AMB-1"
Indexing: "Sphingomonas_wittichii_RW1"
Indexing: "Pelobacter_carbinolicus_DSM_2380"
Indexing: "Streptococcus_thermophilus_LMG_18311"
Indexing: "Cryptobacterium_curtum_DSM_15641"
Indexing: "Saccharophagus_degradans_2-40"
Indexing: "Desulfovibrio_alaskensis_G20"
Indexing: "Flavobacterium_psychrophilum_JIP02_86"
Indexing: "Pediococcus_claussenii_ATCC_BAA-344"
Indexing: "Methylobacterium_populi_BJ001"
Indexing: "Candidatus_Cloacimonas_acidaminovorans_str_Evry"
Indexing: "Borrelia_valaisiana_VS116"
Indexing: "Coprothermobacter_proteolyticus_DSM_5265"
Indexing: "Thermus_scotoductus_SA-01"
Indexing: "Zunongwangia_profunda_SM-A87"
Indexing: "Bacillus_atrophaeus_1942"
Indexing: "Prevotella_dentalis_DSM_3688"
Indexing: "Tsukamurella_paurometabola_DSM_20162"
Indexing: "Acidaminococcus_fermentans_DSM_20731"
Indexing: "Cycloclasticus_zancles_7-ME"
Indexing: "Campylobacter_hominis_ATCC_BAA-381"
Indexing: "Propionibacterium_propionicum_F0230a"
Indexing: "Actinobacillus_succinogenes_130Z"
Indexing: "Streptococcus_uberis_0140J"
Indexing: "Klebsiella_variicola_At-22"
Indexing: "Rickettsia_akari_str_Hartford"
Indexing: "Campylobacter_volucris_LMG_24379"
Indexing: "Mycoplasma_arthritidis_158L3-1"
Indexing: "Truepera_radiovictrix_DSM_17093"
Indexing: "Eubacterium_acidaminophilum_DSM_3953"
Indexing: "Gemmatimonas_aurantiaca_T-27"
Indexing: "Alcanivorax_borkumensis_SK2"
Indexing: "Thermotoga_lettingae_TMO"
Indexing: "Clostridium_novyi_NT"
Indexing: "Rhodococcus_jostii_RHA1"
Indexing: "Thermovirga_lienii_DSM_17291"
Indexing: "Desulfitobacterium_dichloroeliminans_LMG_P-21439"
Indexing: "Helicobacter_cinaedi_PAGU611"
Indexing: "Desulfarculus_baarsii_DSM_2075"
Indexing: "Desulfotomaculum_ruminis_DSM_2154"
Indexing: "Mycobacterium_rhodesiae_NBB3"
Indexing: "Thermotoga_caldifontis_AZM44c09"
Indexing: "Thiocystis_violascens_DSM_198"
Indexing: "Pseudomonas_fluorescens_F113"
Indexing: "Desulfobulbus_propionicus_DSM_2032"
Indexing: "Chlamydophila_caviae_GPIC"
Indexing: "Lactobacillus_kefiranofaciens_ZW3"
Indexing: "Rhodococcus_equi_103S"
Indexing: "Pseudomonas_brassicacearum_subsp_brassicacearum_NFM421"
Indexing: "Candidatus_Nasuia_deltocephalinicola_str_NAS-ALF"
Indexing: "Caldisericum_exile_AZM16c01"
Indexing: "Enterobacter_cloacae_subsp_cloacae_ATCC_13047"
Indexing: "Syntrophomonas_wolfei_subsp_wolfei_str_Goettingen_G311"
Indexing: "Xanthomonas_axonopodis_pv_citri_str_306"
Indexing: "Burkholderia_pseudomallei_BPC006"
Indexing: "Shewanella_loihica_PV-4"
Indexing: "Sulfurospirillum_deleyianum_DSM_6946"
Indexing: "Bartonella_quintana_RM-11"
Indexing: "Amycolicicoccus_subflavus_DQS3-9A1"
Indexing: "Borrelia_bissettii_DN127"
Indexing: "Lactobacillus_rhamnosus_Lc_705"
Indexing: "Pseudomonas_fulva_12-X"
Indexing: "Desulfovibrio_vulgaris_str_Miyazaki_F"
Indexing: "Rhizobium_tropici_CIAT_899"
Indexing: "Bradyrhizobium_oligotrophicum_S58"
Indexing: "Thioalkalimicrobium_cyclicum_ALM1"
Indexing: "Sphaerochaeta_coccoides_DSM_17374"
Indexing: "Caldanaerobacter_subterraneus_subsp_tengcongensis_MB4"
Indexing: "Pectobacterium_atrosepticum_SCRI1043"
Indexing: "Streptomyces_scabiei_87_22"
Indexing: "Mycoplasma_hominis_ATCC_23114"
Indexing: "Neisseria_elongata_subsp_glycolytica_ATCC_29315"
Indexing: "Bdellovibrio_bacteriovorus_W"
Indexing: "Desulfovibrio_desulfuricans_subsp_desulfuricans_str_ATCC_27774"
Indexing: "Spiroplasma_syrphidicola_EA-1"
Indexing: "Pasteurella_multocida_subsp_multocida_str_HN06"
Indexing: "Odoribacter_splanchnicus_DSM_20712"
Indexing: "Leptospira_interrogans_serovar_Copenhageni_str_Fiocruz_L1-130"
Indexing: "Chlorobaculum_parvum_NCIB_8327"
Indexing: "Bartonella_clarridgeiae_73"
Indexing: "Wigglesworthia_glossinidia_endosymbiont_of_Glossina_brevipalpis"
Indexing: "Dictyoglomus_thermophilum_H-6-12"
Indexing: "Mycobacterium_gilvum_PYR-GCK"
Indexing: "Candidatus_Moranella_endobia_PCVAL"
Indexing: "Acidiphilium_multivorum_AIU301"
Indexing: "Mesorhizobium_opportunistum_WSM2075"
Indexing: "Granulibacter_bethesdensis_CGDNIH4"
Indexing: "Chlamydia_trachomatis_L3_404_LN"
Indexing: "Pectobacterium_carotovorum_subsp_odoriferum"
Indexing: "Leuconostoc_citreum_KM20"
Indexing: "Roseobacter_litoralis_Och_149"
Indexing: "Shewanella_sediminis_HAW-EB3"
Indexing: "Sphaerochaeta_globosa_str_Buddy"
Indexing: "Sulfurimonas_autotrophica_DSM_16294"
Indexing: "Thermobaculum_terrenum_ATCC_BAA-798"
Indexing: "Mycobacterium_tuberculosis_str_Beijing_NITR203"
Indexing: "Xanthomonas_oryzae_pv_oryzae_PXO99A"
Indexing: "Cellulomonas_flavigena_DSM_20109"
Indexing: "Mycoplasma_flocculare_ATCC_27399"
Indexing: "Spirosoma_linguale_DSM_74"
Indexing: "Chlorobium_chlorochromatii_CaD3"
Indexing: "Burkholderia_phytofirmans_PsJN"
Indexing: "Lactobacillus_casei_subsp_casei_ATCC_393"
Indexing: "Streptococcus_mitis_B6"
Indexing: "Streptococcus_parasanguinis_ATCC_15912"
Indexing: "Corallococcus_coralloides_DSM_2259"
Indexing: "Chlamydophila_pneumoniae_CWL029"
Indexing: "Dechloromonas_aromatica_RCB"
Indexing: "Citrobacter_rodentium_ICC168"
Indexing: "Wolbachia_endosymbiont_of_Onchocerca_volvulus_str_Cameroon"
Indexing: "Candidatus_Kinetoplastibacterium_oncopeltii_TCC290E"
Indexing: "Chlorobium_phaeobacteroides_DSM_266"
Indexing: "Robiginitalea_biformata_HTCC2501"
Indexing: "Thermoanaerobacterium_xylanolyticum_LX-11"
Indexing: "Actinobacillus_equuli_subsp_equuli"
Indexing: "Desulfitobacterium_metallireducens_DSM_15288"
Indexing: "Taylorella_equigenitalis_MCE9"
Indexing: "Desulfitobacterium_dehalogenans_ATCC_51507"
Indexing: "Alkaliphilus_oremlandii_OhILAs"
Indexing: "Thermoanaerobacter_pseudethanolicus_ATCC_33223"
Indexing: "Corynebacterium_glutamicum_ATCC_13032"
Indexing: "Xenorhabdus_bovienii_SS-2004"
Indexing: "Acidiphilium_cryptum_JF-5"
Indexing: "Streptomyces_violaceusniger_Tu_4113"
Indexing: "Paenibacillus_mucilaginosus_KNP414"
Indexing: "Pantoea_ananatis_PA13"
Indexing: "Mycobacterium_neoaurum_VKM_Ac-1815D"
Indexing: "Oenococcus_kitaharae_DSM_17330"
Indexing: "Borrelia_garinii_SZ"
Indexing: "Geobacter_daltonii_FRC-32"
Indexing: "Nocardia_brasiliensis_ATCC_700358"
Indexing: "Burkholderia_vietnamiensis_G4"
Indexing: "Sulfurimonas_gotlandica_GD1"
Indexing: "Lactobacillus_gasseri_ATCC_33323_JCM_1131"
Indexing: "Kutzneria_albida_DSM_43870"
Indexing: "Treponema_succinifaciens_DSM_2489"
Indexing: "Thermodesulfatator_indicus_DSM_15286"
Indexing: "Caldicellulosiruptor_obsidiansis_OB47"
Indexing: "Actinobacillus_suis_ATCC_33415"
Indexing: "Cupriavidus_metallidurans_CH34"
Indexing: "Sinorhizobium_meliloti_AK83"
Indexing: "Methylotenera_versatilis_301"
Indexing: "Buchnera_aphidicola_str_G002_Myzus_persicae"
Indexing: "Corynebacterium_argentoratense_DSM_44202"
Indexing: "Cytophaga_hutchinsonii_ATCC_33406"
Indexing: "Thermomonospora_curvata_DSM_43183"
Indexing: "Acetobacterium_woodii_DSM_1030"
Indexing: "Rickettsia_massiliae_MTU5"
Indexing: "Staphylococcus_pseudintermedius_ED99"
Indexing: "Haemophilus_parainfluenzae_T3T1"
Indexing: "Mahella_australiensis_50-1_BON"
Indexing: "Gardnerella_vaginalis_ATCC_14019"
Indexing: "Halothiobacillus_neapolitanus_c2"
Indexing: "Muricauda_ruestringensis_DSM_13258"
Indexing: "Alcanivorax_dieselolei_B5"
Indexing: "Leuconostoc_kimchii_IMSNU_11154"
Indexing: "Parvularcula_bermudensis_HTCC2503"
Indexing: "Alkaliphilus_metalliredigens_QYMF"
Indexing: "Thioalkalimicrobium_aerophilum_AL3"
Indexing: "Chlamydia_psittaci_MN"
Indexing: "Runella_slithyformis_DSM_19594"
Indexing: "Weeksella_virosa_DSM_16922"
Indexing: "Sulfuricella_denitrificans_skB26"
Indexing: "Cellulophaga_lytica_DSM_7489"
Indexing: "Bifidobacterium_adolescentis_ATCC_15703"
Indexing: "Rickettsia_canadensis_str_McKiel"
Indexing: "Aggregatibacter_actinomycetemcomitans_D7S-1"
Indexing: "Mycoplasma_ovis_str_Michigan"
Indexing: "Bacillus_cellulosilyticus_DSM_2522"
Indexing: "Nitrosospira_multiformis_ATCC_25196"
Indexing: "Bifidobacterium_thermophilum_RBL67"
Indexing: "Corynebacterium_jeikeium_K411"
Indexing: "Porphyromonas_asaccharolytica_DSM_20707"
Indexing: "Candidatus_Uzinura_diaspidicola_str_ASNER"
Indexing: "Mycoplasma_bovis_HB0801"
Indexing: "Staphylococcus_pasteuri_SP1"
Indexing: "Thiomicrospira_crunogena_XCL-2"
Indexing: "Candidatus_Koribacter_versatilis_Ellin345"
Indexing: "Listeria_monocytogenes_serotype_4b_str_CLIP_80459"
Indexing: "Neorickettsia_sennetsu_str_Miyayama"
Indexing: "Gluconacetobacter_diazotrophicus_PA1_5"
Indexing: "Streptococcus_lutetiensis_033"
Indexing: "Propionibacterium_acidipropionici_ATCC_4875"
Indexing: "Ruegeria_pomeroyi_DSS-3"
Indexing: "Helicobacter_felis_ATCC_49179"
Indexing: "Serratia_marcescens_subsp_marcescens_Db11"
Indexing: "Candidatus_Liberibacter_solanacearum_CLso-ZC1"
Indexing: "Micavibrio_aeruginosavorus_EPB"
Indexing: "Desulfobacula_toluolica_Tol2"
Indexing: "Campylobacter_insulaenigrae_NCTC_12927"
Indexing: "Pseudomonas_syringae_pv_tomato_str_DC3000"
Indexing: "Psychroflexus_torquis_ATCC_700755"
Indexing: "Meiothermus_ruber_DSM_1279"
Indexing: "Ehrlichia_muris_AS145"
Indexing: "Mycobacterium_indicus_pranii_MTCC_9506"
Indexing: "Candidatus_Desulforudis_audaxviator_MP104C"
Indexing: "Yersinia_aldovae_670-83"
Indexing: "Prevotella_intermedia_17"
Indexing: "Rickettsia_heilongjiangensis_054"
Indexing: "Bordetella_holmesii_44057"
Indexing: "Pseudomonas_resinovorans_NBRC_106553"
Indexing: "Brucella_abortus_S19"
Indexing: "Thermoanaerobacter_wiegelii_Rt8_B1"
Indexing: "Thiobacillus_denitrificans_ATCC_25259"
Indexing: "Borrelia_burgdorferi_ZS7"
Indexing: "Candidatus_Vesicomyosocius_okutanii_HA"
Indexing: "Orientia_tsutsugamushi_str_Boryong"
Indexing: "Bacteroides_salanitronis_DSM_18170"
Indexing: "Bacteroides_thetaiotaomicron_VPI-5482"
Indexing: "Bacteroides_fragilis_638R"
Indexing: "Macrococcus_caseolyticus_JCSC5402"
Indexing: "Paenibacillus_polymyxa_CR1"
Indexing: "Lactobacillus_brevis_ATCC_367"
Indexing: "Symbiobacterium_thermophilum_IAM_14863"
Indexing: "Kineococcus_radiotolerans_SRS30216_ATCC_BAA-149"
Indexing: "Xanthomonas_albilineans_GPE_PC73"
Indexing: "Myxococcus_xanthus_DK_1622"
Indexing: "Halanaerobium_praevalens_DSM_2228"
Indexing: "Acetohalobium_arabaticum_DSM_5501"
Indexing: "Weissella_koreensis_KACC_15510"
Indexing: "Rhodococcus_erythropolis_PR4"
Indexing: "Arthrobacter_chlorophenolicus_A6"
Indexing: "Streptomyces_griseus_subsp_griseus_NBRC_13350"
Indexing: "Streptomyces_albus_J1074"
Indexing: "Bartonella_bacilliformis_KC583"
Indexing: "Streptomyces_avermitilis_MA-4680_NBRC_14893"
Indexing: "Pseudomonas_monteilii_SB3101"
Indexing: "Oenococcus_oeni_PSU-1"
Indexing: "Shewanella_putrefaciens_200"
Indexing: "Dictyoglomus_turgidum_DSM_6724"
Indexing: "Chlamydia_avium_10DC88"
Indexing: "Colwellia_psychrerythraea_34H"
Indexing: "Streptomyces_lividans_TK24"
Indexing: "Raoultella_ornithinolytica_B6"
Indexing: "Enterococcus_hirae_ATCC_9790"
Indexing: "Azotobacter_vinelandii_CA6"
Indexing: "Acidithiobacillus_ferrivorans_SS3"
Indexing: "Paludibacter_propionicigenes_WB4"
Indexing: "Sphingobium_chlorophenolicum_L-1"
Indexing: "Streptomyces_hygroscopicus_subsp_jinggangensis_5008"
Indexing: "Desulfurivibrio_alkaliphilus_AHT2"
Indexing: "Lactococcus_garvieae_ATCC_49156"
Indexing: "Neorickettsia_risticii_str_Illinois"
Indexing: "Maricaulis_maris_MCS10"
Indexing: "Rhodococcus_pyridinivorans_SB3094"
Indexing: "Leuconostoc_mesenteroides_subsp_mesenteroides_J18"
Indexing: "Pseudomonas_putida_F1"
Indexing: "Pseudomonas_aeruginosa_RP73"
Indexing: "Leuconostoc_carnosum_JB16"
Indexing: "_Bacillus_selenitireducens_MLS10"
Indexing: "Capnocytophaga_ochracea_DSM_7271"
Indexing: "Streptococcus_constellatus_subsp_pharyngis_C232"
Indexing: "Streptococcus_macedonicus_ACA-DC_198"
Indexing: "Listeria_seeligeri_serovar_1_2b_str_SLCC3954"
Indexing: "Arthrobacter_aurescens_TC1"
Indexing: "Planctomyces_brasiliensis_DSM_5305"
Indexing: "Sphingobium_japonicum_UT26S"
Indexing: "Carboxydothermus_hydrogenoformans_Z-2901"
Indexing: "Psychrobacter_cryohalolentis_K5"
Indexing: "Bartonella_vinsonii_subsp_berkhoffii_str_Winnie"
Indexing: "Micromonospora_aurantiaca_ATCC_27029"
Indexing: "Bifidobacterium_kashiwanohense_PV20-2"
Indexing: "Burkholderia_glumae_BGR1"
Indexing: "Frankia_alni_ACN14a"
Indexing: "Salinibacter_ruber_DSM_13855"
Indexing: "Ilyobacter_polytropus_DSM_2926"
Indexing: "Enterococcus_mundtii_QU_25"
Indexing: "Chloroflexus_aurantiacus_J-10-fl"
Indexing: "Cyanobacterium_aponinum_PCC_10605"
Indexing: "Intrasporangium_calvum_DSM_43043"
Indexing: "Methylotenera_mobilis_JLW8"
Indexing: "Thermocrinis_albus_DSM_14484"
Indexing: "Tetragenococcus_halophilus_NBRC_12172"
Indexing: "Haemophilus_parasuis_ZJ0906"
Indexing: "Bifidobacterium_bifidum_BGN4"
Indexing: "Rickettsia_parkeri_str_Portsmouth"
Indexing: "Thermotoga_hypogea_NBRC_106472"
Indexing: "Haemophilus_ducreyi_35000HP"
Indexing: "Atopobium_parvulum_DSM_20469"
Indexing: "Bacillus_halodurans_C-125"
Indexing: "Agrobacterium_radiobacter_K84"
Indexing: "Mycoplasma_mycoides_subsp_mycoides"
Indexing: "Pseudomonas_cichorii_JBC1"
Indexing: "Bifidobacterium_animalis_subsp_lactis_ATCC_27673"
Indexing: "Alistipes_finegoldii_DSM_17242"
Indexing: "Propionibacterium_freudenreichii_subsp_shermanii_CIRM-BIA1"
Indexing: "Thalassospira_xiamenensis_M-5_DSM_17429"
Indexing: "Oscillatoria_acuminata_PCC_6304"
Indexing: "Hyphomicrobium_nitrativorans_NL23"
Indexing: "Lactobacillus_amylovorus_GRL1118"
Indexing: "Kyrpidia_tusciae_DSM_2912"
Indexing: "Collimonas_fungivorans_Ter331"
Indexing: "Fusobacterium_nucleatum_subsp_nucleatum_ATCC_25586"
Indexing: "uncultured_Termite_group_1_bacterium_phylotype_Rs-D17"
Indexing: "Candidatus_Blochmannia_pennsylvanicus_str_BPEN"
Indexing: "Corynebacterium_maris_DSM_45190"
Indexing: "Dactylococcopsis_salina_PCC_8305"
Indexing: "Rhizobium_gallicum_bv_gallicum_R602"
Indexing: "Leptothrix_cholodnii_SP-6"
Indexing: "Anaplasma_phagocytophilum_str_HZ2"
Indexing: "Roseibacterium_elongatum_DSM_19469"
Indexing: "Corynebacterium_variabile_DSM_44702"
Indexing: "_Clostridium_saccharolyticum_WM1"
Indexing: "Nitrosococcus_watsonii_C-113"
Indexing: "Streptococcus_oralis_Uo5"
Indexing: "Desulfomonile_tiedjei_DSM_6799"
Indexing: "Citrobacter_koseri_ATCC_BAA-895"
Indexing: "Aminobacterium_colombiense_DSM_12261"
Indexing: "Mesorhizobium_loti_MAFF303099"
Indexing: "Psychrobacter_arcticus_273-4"
Indexing: "Sorangium_cellulosum_So_ce56"
Indexing: "Streptococcus_salivarius_JIM8777"
Indexing: "Clostridium_saccharoperbutylacetonicum_N1-4_HMT"
Indexing: "Paenibacillus_sabinae_T27"
Indexing: "Sphaerochaeta_pleomorpha_str_Grapes"
Indexing: "Finegoldia_magna_ATCC_29328"
Indexing: "Xanthobacter_autotrophicus_Py2"
Indexing: "Pandoraea_pnomenusa_3kgm"
Indexing: "Streptococcus_pyogenes_NZ131"
Indexing: "Bacillus_coagulans_DSM_1_ATCC_7050"
Indexing: "Streptococcus_sanguinis_SK36"
Indexing: "Streptomyces_pratensis_ATCC_33331"
Indexing: "Onion_yellows_phytoplasma_OY-M"
Indexing: "Dinoroseobacter_shibae_DFL_12_DSM_16493"
Indexing: "Tepidanaerobacter_acetatoxydans_Re1"
Indexing: "Spiribacter_salinus_M19-40"
Indexing: "Hirschia_baltica_ATCC_49814"
Indexing: "Synechococcus_elongatus_PCC_7942"
Indexing: "Brachyspira_hyodysenteriae_WA1"
Indexing: "Corynebacterium_kroppenstedtii_DSM_44385"
Indexing: "Mycobacterium_ulcerans_Agy99"
Indexing: "Bordetella_parapertussis_Bpp5"
Indexing: "Lactobacillus_plantarum_ZJ316"
Indexing: "Echinicola_vietnamensis_DSM_17526"
Indexing: "Tistrella_mobilis_KA081020-065"
Indexing: "Clostridium_ljungdahlii_DSM_13528"
Indexing: "Liberibacter_crescens_BT-1"
Indexing: "Burkholderia_gladioli_BSR3"
Indexing: "Mycoplasma_cynos_C142"
Indexing: "Actinoplanes_friuliensis_DSM_7358"
Indexing: "Candidatus_Mycoplasma_haemolamae_str_Purdue"
Indexing: "Zymomonas_mobilis_subsp_mobilis_NRRL_B-12526"
Indexing: "Candidatus_Endolissoclinum_faulkneri_L2"
Indexing: "Filifactor_alocis_ATCC_35896"
Indexing: "Mobiluncus_curtisii_ATCC_43063"
Indexing: "Caulobacter_crescentus_NA1000"
Indexing: "Thermoanaerobacter_italicus_Ab9"
Indexing: "Xanthomonas_campestris_pv_raphani_756C"
Indexing: "Thermosediminibacter_oceani_DSM_16646"
Indexing: "Bacillus_toyonensis_BCT-7112"
Indexing: "Ruminococcus_albus_7_DSM_20455"
Indexing: "Clostridium_beijerinckii_ATCC_35702"
Indexing: "Blattabacterium_sp_Mastotermes_darwiniensis_str_MADAR"
Indexing: "Geobacillus_kaustophilus_HTA426"
Indexing: "Streptococcus_mutans_NN2025"
Indexing: "Ureaplasma_urealyticum_serovar_10_str_ATCC_33699"
Indexing: "Shewanella_pealeana_ATCC_700345"
Indexing: "Anaplasma_marginale_str_Florida"
Indexing: "Coraliomargarita_akajimensis_DSM_45221"
Indexing: "Methylocella_silvestris_BL2"
Indexing: "Bacillus_cytotoxicus_NVH_391-98"
Indexing: "Mesorhizobium_ciceri_biovar_biserrulae_WSM1271"
Indexing: "Brucella_suis_bv_1_str_S2"
Indexing: "Tolumonas_auensis_DSM_9187"
Indexing: "Desulfovibrio_salexigens_DSM_2638"
Indexing: "Bacillus_licheniformis_DSM_13_ATCC_14580"
Indexing: "Lawsonia_intracellularis_N343"
Indexing: "Bordetella_pertussis_18323"
Indexing: "Glaciecola_nitratireducens_FR1064"
Indexing: "Natranaerobius_thermophilus_JW_NM-WN-LF"
Indexing: "Enterococcus_faecium_NRRL_B-2354"
Indexing: "Singulisphaera_acidiphila_DSM_18658"
Indexing: "Spiroplasma_apis_B31"
Indexing: "Anaerococcus_prevotii_DSM_20548"
Indexing: "Polaromonas_naphthalenivorans_CJ2"
Indexing: "Providencia_stuartii_MRSN_2154"
Indexing: "Enterococcus_casseliflavus_EC20"
Indexing: "Pseudomonas_denitrificans_ATCC_13867"
Indexing: "Haliangium_ochraceum_DSM_14365"
Indexing: "Treponema_denticola_ATCC_35405"
Indexing: "Simiduia_agarivorans_SA1_DSM_21679"
Indexing: "Candidatus_Riesia_pediculicola_USDA"
Indexing: "Heliobacterium_modesticaldum_Ice1"
Indexing: "Bacillus_cereus_G9241"
Indexing: "Amycolatopsis_mediterranei_S699"
Indexing: "Borrelia_turicatae_91E135"
Indexing: "Anabaena_cylindrica_PCC_7122"
Indexing: "Streptococcus_pneumoniae_ST556"
Indexing: "Acinetobacter_calcoaceticus_PHEA-2"
Indexing: "Rhodopseudomonas_palustris_BisB5"
Indexing: "Mesotoga_prima_MesG1_Ag_4_2"
Indexing: "Idiomarina_loihiensis_GSL_199"
Indexing: "Spirochaeta_smaragdinae_DSM_11293"
Indexing: "Hafnia_alvei_FB1"
Indexing: "Shewanella_oneidensis_MR-1"
Indexing: "Candidatus_Accumulibacter_phosphatis_clade_IIA_str_UW-1"
Indexing: "Candidatus_Sulcia_muelleri_PSPU"
Indexing: "Haliscomenobacter_hydrossis_DSM_1100"
Indexing: "Bifidobacterium_pseudolongum_PV8-2"
Indexing: "Arcobacter_nitrofigilis_DSM_7299"
Indexing: "Rickettsia_typhi_str_TH1527"
Indexing: "Mycoplasma_parvum_str_Indiana"
Indexing: "Phaeobacter_inhibens_DSM_17395"
Indexing: "Erwinia_pyrifoliae_Ep1_96"
Indexing: "Lactobacillus_johnsonii_DPC_6026"
Indexing: "Agrobacterium_vitis_S4"
Indexing: "Candidatus_Liberibacter_americanus_str_Sao_Paulo"
Indexing: "Chlorobium_tepidum_TLS"
Indexing: "Bacillus_amyloliquefaciens_SQR9"
Indexing: "Nocardia_cyriacigeorgica_GUH-2"
Indexing: "Beutenbergia_cavernae_DSM_12333"
Indexing: "Ehrlichia_ruminantium_str_Welgevonden"
Indexing: "Basilea_psittacipulmonis_DSM_24701"
Indexing: "Methylomonas_methanica_MC09"
Indexing: "Chloroherpeton_thalassium_ATCC_35110"
Indexing: "Saccharopolyspora_erythraea_NRRL_2338"
Indexing: "Verrucosispora_maris_AB-18-032"
Indexing: "Bifidobacterium_asteroides_PRL2011"
Indexing: "Thermotoga_neapolitana_DSM_4359"
Indexing: "Candidatus_Blochmannia_vafer_str_BVAF"
Indexing: "Corynebacterium_halotolerans_YIM_70093_DSM_44683"
Indexing: "Streptococcus_equi_subsp_zooepidemicus"
Indexing: "Yersinia_enterocolitica_subsp_palearctica_105_5R_r"
Indexing: "Wolbachia_endosymbiont_wPip_Mol_of_Culex_molestus"
Indexing: "Rothia_mucilaginosa_DY-18"
Indexing: "Morganella_morganii_subsp_morganii_KT"
Indexing: "Borrelia_parkeri_HR1"
Indexing: "Paenibacillus_larvae_subsp_larvae_DSM_25430"
Indexing: "Brucella_ceti_TE28753-12"
Indexing: "Rhodobacter_sphaeroides_2_4_1"
Indexing: "Nonlabens_dokdonensis_DSW-6"
Indexing: "Methylobacterium_extorquens_AM1"
Indexing: "Propionibacterium_acnes_6609"
Indexing: "Hippea_maritima_DSM_10411"
Indexing: "Anaerolinea_thermophila_UNI-1"
Indexing: "Achromobacter_xylosoxidans_A8"
Indexing: "Octadecabacter_arcticus_238"
Indexing: "Acaryochloris_marina_MBIC11017"
Indexing: "Streptococcus_pseudopneumoniae_IS7493"
Indexing: "Alicycliphilus_denitrificans_BC"
Indexing: "Mesorhizobium_australicum_WSM2073"
Indexing: "Trichodesmium_erythraeum_IMS101"
Indexing: "Adlercreutzia_equolifaciens_DSM_19450"
Indexing: "Candidatus_Tremblaya_princeps_PCVAL"
Indexing: "Thermotoga_petrophila_RKU-1"
Indexing: "Spirochaeta_africana_DSM_8902"
Indexing: "Acholeplasma_laidlawii_PG-8A"
Indexing: "Mycoplasma_haemocanis_str_Illinois"
Indexing: "Bacillus_megaterium_NBRC_15308_ATCC_14581"
Indexing: "Burkholderia_cenocepacia_HI2424"
Indexing: "Francisella_philomiragia_subsp_philomiragia_ATCC_25015"
Indexing: "Treponema_azotonutricium_ZAS-9"
Indexing: "Corynebacterium_doosanense_CAU_212_DSM_45436"
Indexing: "Exiguobacterium_sibiricum_255-15"
Indexing: "Chromobacterium_violaceum_ATCC_12472"
Indexing: "Nostoc_punctiforme_PCC_73102"
Indexing: "Octadecabacter_antarcticus_307"
Indexing: "Candidatus_Symbiobacter_mobilis_CR"
Indexing: "Kytococcus_sedentarius_DSM_20547"
Indexing: "Castellaniella_defragrans_65Phen"
Indexing: "Syntrophothermus_lipocalidus_DSM_12680"
Indexing: "Caldicellulosiruptor_hydrothermalis_108"
Indexing: "Prevotella_sp_oral_taxon_299_str_F0039"
Indexing: "Yersinia_pseudotuberculosis_YPIII"
Indexing: "Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris"
Indexing: "Rickettsia_felis_URRWXCal2"
Indexing: "Burkholderia_ambifaria_AMMD"
Indexing: "Hyphomicrobium_denitrificans_1NES1"
Indexing: "Parachlamydia_acanthamoebae_UV-7"
Indexing: "Blattabacterium_sp_Panesthia_angustipennis_spadica_str_BPAA"
Indexing: "Lachnoclostridium_phytofermentans_ISDg"
Indexing: "Acidithiobacillus_ferrooxidans_ATCC_53993"
Indexing: "Shewanella_amazonensis_SB2B"
Indexing: "Staphylococcus_lugdunensis_N920143"
Indexing: "Meiothermus_silvanus_DSM_9946"
Indexing: "Bartonella_henselae_str_Houston-1"
Indexing: "Azotobacter_chroococcum_NCIMB_8003"
Indexing: "Burkholderia_thailandensis_2002721723"
Indexing: "Desulfurobacterium_thermolithotrophum_DSM_11699"
Indexing: "Ochrobactrum_anthropi_ATCC_49188"
Indexing: "Burkholderia_cepacia_GG4"
Indexing: "Bacillus_methanolicus_MGA3"
Indexing: "Erysipelothrix_rhusiopathiae_SY1027"
Indexing: "Leadbetterella_byssophila_DSM_17132"
Indexing: "Thioalkalivibrio_sulfidiphilus_HL-EbGr7"
Indexing: "Burkholderia_xenovorans_LB400"
Indexing: "Brucella_melitensis_ATCC_23457"
Indexing: "Corynebacterium_urealyticum_DSM_7109"
Indexing: "Borrelia_duttonii_Ly"
Indexing: "Novosphingobium_pentaromativorans_US6-1"
Indexing: "Candidatus_Midichloria_mitochondrii_IricVA"
Indexing: "Pedobacter_heparinus_DSM_2366"
Indexing: "Lactococcus_lactis_subsp_cremoris_UC509_9"
Indexing: "Wolbachia_endosymbiont_of_Drosophila_simulans_wHa"
Indexing: "Shewanella_denitrificans_OS217"
Indexing: "Shigella_flexneri_Shi06HN006"
Indexing: "Thermosipho_africanus_TCF52B"
Indexing: "Pseudomonas_entomophila_L48"
Indexing: "Pirellula_staleyi_DSM_6068"
Indexing: "Agrobacterium_fabrum_str_C58"
Indexing: "Corynebacterium_marinum_DSM_44953"
Indexing: "Azospirillum_lipoferum_4B"
Indexing: "Dickeya_zeae_EC1"
Indexing: "Spirochaeta_thermophila_DSM_6578"
Indexing: "Xylella_fastidiosa_subsp_fastidiosa_GB514"
Indexing: "Rickettsia_africae_ESF-5"
Indexing: "Mycobacterium_liflandii_128FXT"
Indexing: "Sulfuritalea_hydrogenivorans_sk43H"
Indexing: "Candidatus_Kinetoplastibacterium_crithidii_ex_Angomonas_deanei_ATCC_30255"
Indexing: "Elizabethkingia_anophelis_NUHP1"
Indexing: "Microbacterium_testaceum_StLB037"
Indexing: "Thermotoga_naphthophila_RKU-10"
Indexing: "Brucella_ovis_ATCC_25840"
Indexing: "Kosakonia_sacchari_SP1"
Indexing: "Terriglobus_roseus_DSM_18391"
Indexing: "Methylobacterium_oryzae_CBMB20"
Indexing: "Streptococcus_dysgalactiae_subsp_equisimilis_167"
Indexing: "Mycobacterium_marinum_M"
Indexing: "Segniliparus_rotundus_DSM_44985"
Indexing: "Lactobacillus_fermentum_F-6"
Indexing: "Nostoc_azollae_0708"
Indexing: "Gloeobacter_kilaueensis_JS1"
Indexing: "Campylobacter_peloridis_LMG_23910"
Indexing: "Thermotoga_elfii_NBRC_107921"
Indexing: "Methylacidiphilum_infernorum_V4"
Indexing: "Bacillus_clausii_KSM-K16"
Indexing: "Desulfosporosinus_meridiei_DSM_13257"
Indexing: "Mycoplasma_fermentans_JER"
Indexing: "Enterobacter_lignolyticus_SCF1"
Indexing: "Candidatus_Amoebophilus_asiaticus_5a2"
Indexing: "Kitasatospora_setae_KM-6054"
Indexing: "Variovorax_paradoxus_EPS"
Indexing: "Hyphomonas_neptunium_ATCC_15444"
Indexing: "Geobacter_uraniireducens_Rf4"
Indexing: "Nitrosococcus_halophilus_Nc_4"
Indexing: "Desulfohalobium_retbaense_DSM_5692"
Indexing: "Snodgrassella_alvi_wkB2"
Indexing: "Akkermansia_muciniphila_ATCC_BAA-835"
Indexing: "Clostridium_autoethanogenum_DSM_10061"
Indexing: "Enterobacter_aerogenes_KCTC_2190"
Indexing: "Mycobacterium_vanbaalenii_PYR-1"
Indexing: "Deinococcus_radiodurans_R1"
Indexing: "Mycobacterium_yongonense_05-1390"
Indexing: "Treponema_paraluiscuniculi_Cuniculi_A"
Indexing: "Brevundimonas_subvibrioides_ATCC_15264"
Indexing: "Chroococcidiopsis_thermalis_PCC_7203"
Indexing: "Butyrivibrio_proteoclasticus_B316"
Indexing: "Rickettsia_rhipicephali_str_3-7-female6-CWPP"
Indexing: "Pseudomonas_chlororaphis_subsp_aurantiaca"
Indexing: "Serratia_fonticola_RB-25"
Indexing: "Acidovorax_avenae_subsp_avenae_ATCC_19860"
Indexing: "Anaerobaculum_mobile_DSM_13181"
Indexing: "Cellulophaga_baltica_NN016038"
Indexing: "Dichelobacter_nodosus_VCS1703A"
Indexing: "Bradyrhizobium_japonicum_USDA_6"
Indexing: "Bifidobacterium_indicum_LMG_11587_DSM_20214"
Indexing: "Magnetococcus_marinus_MC-1"
Indexing: "Deinococcus_geothermalis_DSM_11300"
Indexing: "Flexistipes_sinusarabici_DSM_4947"
Indexing: "Lactobacillus_delbrueckii_subsp_bulgaricus_2038"
Indexing: "Corynebacterium_vitaeruminis_DSM_20294"
Indexing: "Candidatus_Puniceispirillum_marinum_IMCC1322"
Indexing: "Delftia_acidovorans_SPH-1"
Indexing: "Lactobacillus_paracasei_subsp_paracasei_JCM_8130"
Indexing: "Olsenella_uli_DSM_7084"
Indexing: "Mycobacterium_bovis_BCG_str_Pasteur_1173P2"
Indexing: "Amphibacillus_xylanus_NBRC_15112"
Indexing: "Desulfotomaculum_kuznetsovii_DSM_6115"
Indexing: "Corynebacterium_efficiens_YS-314"
Indexing: "Magnetospirillum_gryphiswaldense_MSR-1_v2"
Indexing: "Corynebacterium_humireducens_NBRC_106098_DSM_45392"
Indexing: "Helicobacter_acinonychis_str_Sheeba"
Indexing: "Brucella_microti_CCM_4915"
Indexing: "Deinococcus_maricopensis_DSM_21211"
Indexing: "Candidatus_Hepatoplasma_crinochetorum_Av"
Indexing: "Thalassolituus_oleivorans_MIL-1"
Indexing: "Rothia_dentocariosa_ATCC_17931"
Indexing: "Lactobacillus_helveticus_H10"
Indexing: "Spiroplasma_mirum_ATCC_29335"
Indexing: "Blastococcus_saxobsidens_DD2"
Indexing: "Alcanivorax_pacificus_W11-5"
Indexing: "Flavobacterium_indicum_GPTSA100-9_DSM_17447"
Indexing: "Clostridium_saccharobutylicum_DSM_13864"
Indexing: "Taylorella_asinigenitalis_MCE3"
Indexing: "Corynebacterium_callunae_DSM_20147"
Indexing: "Deinococcus_peraridilitoris_DSM_19664"
Indexing: "Neisseria_lactamica_020-06"
Indexing: "Rickettsia_conorii_str_Malish_7"
Indexing: "Borrelia_afzelii_Tom3107"
Indexing: "Borrelia_miyamotoi_LB-2001"
Indexing: "Lactobacillus_buchneri_NRRL_B-30929"
Indexing: "Tannerella_forsythia_ATCC_43037"
Indexing: "Flavobacterium_branchiophilum_FL-15"
Indexing: "Bifidobacterium_breve_689b"
Indexing: "Anoxybacillus_flavithermus_WK1"
Indexing: "Prochlorococcus_marinus_str_MIT_9313"
Indexing: "Rubrivivax_gelatinosus_IL144"
Indexing: "Strawberry_lethal_yellows_phytoplasma_CPA_str_NZSb11"
Indexing: "Neisseria_meningitidis_LNP21362"
Indexing: "Aerococcus_urinae_ACS-120-V-Col10a"
Indexing: "Janthinobacterium_agaricidamnosum_NBRC_102515_DSM_9628"
Indexing: "Burkholderia_mallei_ATCC_23344"
Indexing: "Sideroxydans_lithotrophicus_ES-1"
Indexing: "Pseudomonas_protegens_Pf-5"
Indexing: "Thermanaerovibrio_acidaminovorans_DSM_6589"
Indexing: "Dehalococcoides_mccartyi_CG5"
Indexing: "Pseudoalteromonas_haloplanktis_TAC125"
Indexing: "Treponema_caldaria_DSM_7334"
Indexing: "Leptotrichia_buccalis_C-1013-b"
Indexing: "Acinetobacter_oleivorans_DR1"
Indexing: "Candidatus_Kinetoplastibacterium_galatii_TCC219"
Indexing: "Sebaldella_termitidis_ATCC_33386"
Indexing: "Mannheimia_succiniciproducens_MBEL55E"
Indexing: "Riemerella_anatipestifer_RA-GD"
Indexing: "Nitratifractor_salsuginis_DSM_16511"
Indexing: "Melioribacter_roseus_P3M-2"
Indexing: "Burkholderia_phymatum_STM815"
Indexing: "Ferrimonas_balearica_DSM_9799"
Indexing: "Yersinia_pestis_biovar_Microtus_str_91001"
Indexing: "Mannheimia_varigena_USDA-ARS-USMARC-1388"
Indexing: "Bacteroides_helcogenes_P_36-108"
Indexing: "Nitrobacter_winogradskyi_Nb-255"
Indexing: "Mycoplasma_agalactiae_PG2"
Indexing: "Methylobacterium_radiotolerans_JCM_2831"
Indexing: "Pelodictyon_phaeoclathratiforme_BU-1"
Indexing: "Thiomonas_intermedia_K12"
Indexing: "Lactobacillus_reuteri_SD2112"
Indexing: "Sinorhizobium_fredii_NGR234"
Indexing: "Aeromonas_hydrophila_AL09-71"
Indexing: "Coriobacterium_glomerans_PW2"
Indexing: "Gluconobacter_oxydans_DSM_3504"
Indexing: "Yersinia_frederiksenii_Y225"
Indexing: "Burkholderia_rhizoxinica_HKI_454"
Indexing: "Acidithiobacillus_caldus_ATCC_51756"
Indexing: "Neorhizobium_galegae_bv_officinalis_bv_officinalis_str_HAMBI_1141"
Indexing: "Conexibacter_woesei_DSM_14684"
Indexing: "Streptomyces_fulvissimus_DSM_40593"
Indexing: "Thioflavicoccus_mobilis_8321"
Indexing: "Coxiella_burnetii_Dugway_5J108-111"
Indexing: "Leptospirillum_ferriphilum_YSK"
Indexing: "Roseobacter_denitrificans_OCh_114"
Indexing: "Leifsonia_xyli_subsp_cynodontis_DSM_46306"
Indexing: "Mycoplasma_suis_KI3806"
Indexing: "Eggerthella_lenta_DSM_2243"
Indexing: "Serratia_liquefaciens_ATCC_27592"
Indexing: "Streptobacillus_moniliformis_DSM_12112"
Indexing: "Ornithobacterium_rhinotracheale_ORT-UMN_88"
Indexing: "Rahnella_aquatilis_HX2"
Indexing: "Lactobacillus_salivarius_CECT_5713"
Indexing: "Moraxella_catarrhalis_BBH18"
Indexing: "Pectobacterium_wasabiae_WPP163"
Indexing: "Owenweeksia_hongkongensis_DSM_17368"
Indexing: "Thermobacillus_composti_KWC4"
Indexing: "Paenibacillus_terrae_HPL-003"
Indexing: "Asticcacaulis_excentricus_CB_48"
Indexing: "Edwardsiella_tarda_FL6-60"
Indexing: "Barnesiella_viscericola_DSM_18177"
Indexing: "Erwinia_billingiae_Eb661"
Indexing: "Geobacter_metallireducens_GS-15"
Indexing: "Rickettsia_rickettsii_str_Hino"
Indexing: "Mycoplasma_synoviae_53"
Indexing: "Klebsiella_oxytoca_E718"
Indexing: "Ketogulonicigenium_vulgare_WSH-001"
Indexing: "Xylanimonas_cellulosilytica_DSM_15894"
Indexing: "Desulfotomaculum_acetoxidans_DSM_771"
Indexing: "Bacillus_lehensis_G1"
Indexing: "Streptococcus_iniae_SF1"
Indexing: "Geobacter_bemidjiensis_Bem"
Indexing: "Rhodospirillum_centenum_SW"
Indexing: "Burkholderia_multivorans_ATCC_17616"
Indexing: "Deinococcus_deserti_VCD115"
Indexing: "Frateuria_aurantia_DSM_6220"
Indexing: "Treponema_primitia_ZAS-2"
Indexing: "Thermotoga_maritima_MSB8"
Indexing: "Neorickettsia_helminthoeca_str_Oregon"
Indexing: "Nitrosomonas_eutropha_C91"
Indexing: "Rickettsia_japonica_YH"
Indexing: "Rubrobacter_xylanophilus_DSM_9941"
Indexing: "Syntrophus_aciditrophicus_SB"
Indexing: "Stanieria_cyanosphaera_PCC_7437"
Indexing: "Erythrobacter_litoralis_HTCC2594"
Indexing: "Candidatus_Azobacteroides_pseudotrichonymphae_genomovar_CFP2"
Indexing: "Streptococcus_infantarius_subsp_infantarius_CJ18"
Indexing: "Clostridium_tetani_E88"
Indexing: "Geobacter_lovleyi_SZ"
Indexing: "Treponema_brennaborense_DSM_12168"
Indexing: "Thermovibrio_ammonificans_HB-1"
Indexing: "Desulfotalea_psychrophila_LSv54"
Indexing: "Komagataeibacter_medellinensis_NBRC_3288"
Indexing: "Streptosporangium_roseum_DSM_43021"
Indexing: "Caldilinea_aerophila_DSM_14535_NBRC_104270"
Indexing: "Eubacterium_limosum_KIST612"
Indexing: "Mycoplasma_genitalium_M6320"
Indexing: "Flavobacterium_columnare_ATCC_49512"
Indexing: "Arcobacter_butzleri_7h1h"
Indexing: "Acidimicrobium_ferrooxidans_DSM_10331"
Indexing: "Thioalkalivibrio_nitratireducens_DSM_14787"
Indexing: "Desulfotomaculum_reducens_MI-1"
Indexing: "_Clostridium_stercorarium_subsp_stercorarium_DSM_8532"
Indexing: "Stenotrophomonas_maltophilia_R551-3"
Indexing: "Shigella_sonnei_53G"
Indexing: "Prevotella_ruminicola_23"
Indexing: "Bordetella_bronchiseptica_253"
Indexing: "Shigella_boydii_Sb227"
Indexing: "Amycolatopsis_methanolica_239"
Indexing: "Halothermothrix_orenii_H_168"
Indexing: "Rickettsia_sibirica_246"
Indexing: "Brucella_pinnipedialis_B2_94"
Indexing: "Actinoplanes_missouriensis_431"
Indexing: "Thermacetogenium_phaeum_DSM_12270"
Indexing: "Nitrobacter_hamburgensis_X14"
Indexing: "Advenella_mimigardefordensis_DPN7"
Indexing: "Candidatus_Rickettsia_amblyommii_str_GAT-30V"
Indexing: "Comamonas_testosteroni_TK102"
Indexing: "Desulfurispirillum_indicum_S5"
Indexing: "Bacillus_thuringiensis_serovar_galleriae"
Indexing: "Spiroplasma_diminutum_CUAS-1"
Indexing: "Thermobispora_bispora_DSM_43833"
Indexing: "Caulobacter_segnis_ATCC_21756"
Indexing: "Acinetobacter_baumannii_BJAB07104"
Indexing: "Corynebacterium_terpenotabidum_Y-11"
Indexing: "Rickettsia_helvetica_C9P9"
Indexing: "Brachybacterium_faecium_DSM_4810"
Indexing: "Marinobacter_adhaerens_HP15"
Indexing: "Helicobacter_cetorum_MIT_00-7128"
Indexing: "Geobacillus_thermodenitrificans_NG80-2"
Indexing: "Hymenobacter_swuensis_DY53"
Indexing: "Pseudoxanthomonas_suwonensis_11-1"
Indexing: "Arthrobacter_arilaitensis_Re117"
Indexing: "Isosphaera_pallida_ATCC_43644"
Indexing: "Phycisphaera_mikurensis_NBRC_102666"
Indexing: "Corynebacterium_diphtheriae_C7_beta"
Indexing: "Mycoplasma_hyorhinis_SK76"
Indexing: "Candidatus_Portiera_aleyrodidarum_MED_Bemisia_tabaci"
Indexing: "Ralstonia_solanacearum_GMI1000"
Indexing: "Chlamydia_pecorum_P787"
Indexing: "Baumannia_cicadellinicola_str_Hc_Homalodisca_coagulata"
Indexing: "Shewanella_woodyi_ATCC_51908"
Indexing: "Pleurocapsa_sp_PCC_7327"
Indexing: "Calothrix_sp_PCC_6303"
Indexing: "Thermus_thermophilus_HB8"
Indexing: "cyanobacterium_endosymbiont_of_Epithemia_turgida_isolate_EtSB_Lake_Yunoko"
Indexing: "Listonella_anguillarum_M3"
Indexing: "Streptomyces_cattleya_NRRL_8057_DSM_46488"
Indexing: "Helicobacter_mustelae_12198"
Indexing: "Erwinia_tasmaniensis_Et1_99"
Indexing: "Prevotella_denticola_F0289"
Indexing: "Mycoplasma_haemofelis_str_Langford_1"
Indexing: "Jonesia_denitrificans_DSM_20603"
Indexing: "Mesoplasma_florum_L1"
Indexing: "_Clostridium_acidurici_9a"
Indexing: "Pseudoxanthomonas_spadix_BD-a59"
Indexing: "Clavibacter_michiganensis_subsp_sepedonicus"
Indexing: "Proteus_mirabilis_BB2000"
Indexing: "Fluviicola_taffensis_DSM_16823"
Indexing: "Fervidobacterium_pennivorans_DSM_9078"
Indexing: "Sulfurospirillum_barnesii_SES-3"
Indexing: "Escherichia_fergusonii_ATCC_35469"
Indexing: "Candidatus_Blochmannia_chromaiodes_str_640"
Indexing: "Sphaerobacter_thermophilus_DSM_20745"
Indexing: "Cellvibrio_japonicus_Ueda107"
Indexing: "Nitrosomonas_europaea_ATCC_19718"
Indexing: "Kribbella_flavida_DSM_17836"
Indexing: "Paracoccus_denitrificans_PD1222"
Indexing: "Rhodococcus_opacus_B4"
Indexing: "Serratia_plymuthica_RVH1"
Indexing: "Chloroflexus_aggregans_DSM_9485"
Indexing: "Teredinibacter_turnerae_T7901"
Indexing: "Campylobacter_curvus_525_92"
Indexing: "Rickettsia_slovaca_str_D-CWPP"
Indexing: "Marinomonas_posidonica_IVIA-Po-181"
Indexing: "Oligotropha_carboxidovorans_OM4"
Indexing: "Geobacter_sulfurreducens_KN400"
Indexing: "Azorhizobium_caulinodans_ORS_571"
Indexing: "Leptospirillum_ferrooxidans_C2-3"
Indexing: "Rickettsia_montanensis_str_OSU_85-930"
Indexing: "Xanthomonas_campestris_pv_vesicatoria_str_85-10"
Indexing: "Methylococcus_capsulatus_str_Bath"
Indexing: "Staphylococcus_epidermidis_RP62A"
Indexing: "Blattabacterium_sp_Blattella_germanica_str_Bge"
Indexing: "Vibrio_campbellii_ATCC_BAA-1116"
Indexing: "Prevotella_melaninogenica_ATCC_25845"
Indexing: "Thioalkalivibrio_thiocyanoxidans_ARh_4"
Indexing: "Enterobacter_asburiae_LF7a"
Indexing: "Candidatus_Tremblaya_phenacola_PAVE"
Indexing: "_Clostridium_clariflavum_DSM_19732"
Indexing: "Shewanella_halifaxensis_HAW-EB4"
Indexing: "Anabaena_variabilis_ATCC_29413"
Indexing: "Opitutus_terrae_PB90-1"
Indexing: "Planctomyces_limnophilus_DSM_3776"
Indexing: "Shewanella_violacea_DSS12"
Indexing: "Candidatus_Ruthia_magnifica_str_Cm_Calyptogena_magnifica"
Indexing: "Streptococcus_oligofermentans_AS_1_3089"
Indexing: "Thermoanaerobacterium_thermosaccharolyticum_M0795"
Indexing: "Vibrio_alginolyticus_NBRC_15630_ATCC_17749"
Indexing: "Campylobacter_concisus_13826"
Indexing: "Dyella_japonica_A8"
Indexing: "Bordetella_avium_197N"
Indexing: "Dehalobacter_restrictus_DSM_9455"
Indexing: "Fibrobacter_succinogenes_subsp_succinogenes_S85"
Indexing: "Brucella_canis_HSK_A52141"
Indexing: "Helicobacter_pylori_F16"
Indexing: "Turneriella_parva_DSM_21527"
Indexing: "Desulfococcus_oleovorans_Hxd3"
Indexing: "Thermaerobacter_marianensis_DSM_12885"
Indexing: "Gordonia_bronchialis_DSM_43247"
Indexing: "Mycoplasma_leachii_PG50"
Indexing: "Mycobacterium_kansasii_ATCC_12478"
Indexing: "Rickettsia_prowazekii_str_GvV257"
Indexing: "Halobacteroides_halobius_DSM_5150"
Indexing: "Pediococcus_pentosaceus_ATCC_25745"
Indexing: "Listeria_welshimeri_serovar_6b_str_SLCC5334"
Indexing: "Veillonella_parvula_DSM_2008"
Indexing: "Streptomyces_bingchenggensis_BCW-1"
Indexing: "Calditerrivibrio_nitroreducens_DSM_19672"
Indexing: "Burkholderia_phenoliruptrix_BR3459a"
Indexing: "Salinispora_arenicola_CNS-205"
Indexing: "Dechlorosoma_suillum_PS"
Indexing: "Verrucomicrobium_spinosum_DSM_4136_JCM_18804"
Indexing: "Synechocystis_sp_PCC_6803_substr_PCC-P"
Indexing: "Ammonifex_degensii_KC4"
Indexing: "Bifidobacterium_longum_DJO10A"
Indexing: "Cellulomonas_fimi_ATCC_484"
Indexing: "Nocardiopsis_dassonvillei_subsp_dassonvillei_DSM_43111"
Indexing: "Aequorivita_sublithincola_DSM_14238"
Indexing: "Desulfomicrobium_baculatum_DSM_4028"
Indexing: "Aster_yellows_witches-broom_phytoplasma_AYWB"
Indexing: "Pseudoalteromonas_atlantica_T6c"
Indexing: "Emticicia_oligotrophica_DSM_17448"
Indexing: "Rhodospirillum_photometricum_DSM_122"
Indexing: "Rickettsia_bellii_RML369-C"
Indexing: "Blattabacterium_sp_Blatta_orientalis_str_Tarazona"
Indexing: "Saccharomonospora_viridis_DSM_43017"
Indexing: "Candidatus_Pelagibacter_ubique_HTCC1062"
Indexing: "Renibacterium_salmoninarum_ATCC_33209"
Indexing: "Acidaminococcus_intestini_RyC-MR95"
Indexing: "Corynebacterium_aurimucosum_ATCC_700975"
Indexing: "Francisella_cf_tularensis_subsp_novicida_3523"
Indexing: "Vibrio_fischeri_ES114"
Indexing: "Mycobacterium_leprae_Br4923"
Indexing: "Sphingopyxis_alaskensis_RB2256"
Indexing: "Paracoccus_aminophilus_JCM_7686"
Indexing: "Thermodesulfobacterium_commune_DSM_2178"
Indexing: "Trueperella_pyogenes_TP8"
Indexing: "Syntrophobacter_fumaroxidans_MPOB"
Indexing: "Pseudomonas_balearica_DSM_6083"
Indexing: "Caldicellulosiruptor_lactoaceticus_6A"
Indexing: "Corynebacterium_ulcerans_BR-AD22"
Indexing: "Salmonella_enterica_subsp_enterica_serovar_Heidelberg_str_CFSAN002069"
Indexing: "Syntrophobotulus_glycolicus_DSM_8271"
Indexing: "Polynucleobacter_necessarius_subsp_necessarius_STIR1"
Indexing: "Gallibacterium_anatis_UMN179"
Indexing: "Mycoplasma_wenyonii_str_Massachusetts"
Indexing: "Thermodesulfobacterium_geofontis_OPF15"
Indexing: "Exiguobacterium_antarcticum_B7"
Indexing: "Campylobacter_lari_RM2100"
Indexing: "Ruminiclostridium_thermocellum_DSM_1313"
Indexing: "Starkeya_novella_DSM_506"
Indexing: "Staphylococcus_warneri_SG1"
Indexing: "Mycobacterium_smegmatis_JS623"
Indexing: "Chlorobium_limicola_DSM_245"
Indexing: "Bacillus_pumilus_SAFR-032"
Indexing: "Spiroplasma_chrysopicola_DF-1"
Indexing: "Candidatus_Kinetoplastibacterium_blastocrithidii_TCC012E"
Indexing: "_Eubacterium_eligens_ATCC_27750"
Indexing: "Novosphingobium_aromaticivorans_DSM_12444"
Indexing: "Desulfatibacillum_alkenivorans_AK-01"
Indexing: "Sulfurospirillum_multivorans_DSM_12446"
Indexing: "Candidatus_Kinetoplastibacterium_desouzaii_TCC079E"
Indexing: "Carnobacterium_maltaromaticum_LMA28"
Indexing: "Corynebacterium_falsenii_DSM_44353"
Indexing: "Methylobacterium_nodulans_ORS_2060"
Indexing: "Psychromonas_ingrahamii_37"
Indexing: "Hahella_chejuensis_KCTC_2396"
Indexing: "Flavobacterium_johnsoniae_UW101"
Indexing: "Clostridium_kluyveri_NBRC_12016"
Indexing: "Parabacteroides_distasonis_ATCC_8503"
Indexing: "Prosthecochloris_aestuarii_DSM_271"
Indexing: "Rhodospirillum_rubrum_F11"
Indexing: "Selenomonas_sputigena_ATCC_35185"
Indexing: "Oscillatoria_nigro-viridis_PCC_7112"
Indexing: "Spiroplasma_taiwanense_CT-1"
Indexing: "Treponema_pallidum_subsp_pallidum_str_Sea_81-4"
Indexing: "Pseudomonas_mendocina_NK-01"
Indexing: "Thermus_oshimai_JL-2"
Indexing: "Helicobacter_hepaticus_ATCC_51449"
Indexing: "Petrotoga_mobilis_SJ95"
Indexing: "Brachyspira_pilosicoli_95_1000"
Indexing: "Actinosynnema_mirum_DSM_43827"
Indexing: "Pseudomonas_knackmussii_B13"
Indexing: "Laribacter_hongkongensis_HLHK9"
Indexing: "Alteromonas_macleodii_str_Balearic_Sea_AD45"
Indexing: "Acidobacterium_capsulatum_ATCC_51196"
Indexing: "Bacteriovorax_marinus_SJ"
Indexing: "Brachyspira_intermedia_PWS_A"
Indexing: "Clostridium_acetobutylicum_DSM_1731"
Indexing: "Klebsiella_pneumoniae_30660_NJST258_1"
Indexing: "Bdellovibrio_exovorus_JSS"
Indexing: "Pseudomonas_syringae_pv_syringae_B728a"
Indexing: "Marinitoga_piezophila_KA3"
Indexing: "Candidatus_Sodalis_pierantonius_str_SOPE"
Indexing: "Clostridium_baratii_str_Sullivan"
Indexing: "Desulfobacterium_autotrophicum_HRM2"
Indexing: "Shigella_dysenteriae_Sd197"
Indexing: "Staphylococcus_carnosus_subsp_carnosus_TM300"
Indexing: "Ureaplasma_parvum_serovar_3_str_ATCC_700970"
Indexing: "Parvibaculum_lavamentivorans_DS-1"
Indexing: "Mannheimia_haemolytica_USDA-ARS-USMARC-185"
Indexing: "Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi"

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# determining the largest genome
!cd $workDir; \
    find genomes/ -name "*fasta" | \
    xargs -I % bash -c "printf '%    '; NY_misc_perl contig_lengths %" \
    > genomes/genome_lengths.txt


    

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# reading in list; combining lengths if multiple contigs
inFile = "genome_lengths.txt"
filePath = os.path.join(workDir, 'genomes', inFile)

tbl = []
with open(filePath, 'r') as inF:
    lastTaxon = []
    for line in inF.readlines():
        line = line.rstrip().split('    ')
        if len(line) == 2:
            if len(lastTaxon) > 0:
                tbl.append(lastTaxon)
            lastTaxon = line
        elif len(line) == 1:
            lastTaxon[1] += line[0]
        else:
            raise IOError, "Each line must have 1 or 2 columns!"
    else:
        tbl.append(lastTaxon)


    

In [176]:

    

!cd $workDir; \
     $SIPSimExe fragGC genomes/genome_index.txt \
    --fp ./genomes/ \
    --fr 515Fm-927Rm.fna \
    --np 24 \
    --nf 50X \
    > genomeAll_ampFragGC_50X.txt


    

    




Processing: "Kangiella_koreensis_DSM_16069"
Processing: "Polymorphum_gilvum_SL003B-26A1"
Processing: "_Cellvibrio_gilvus_ATCC_13127"
Processing: "Croceibacter_atlanticus_HTCC2559"
Processing: "Sulfuricurvum_kujiense_DSM_16994"
Processing: "Eubacterium_rectale_ATCC_33656"
Processing: "Nocardia_nova_SH22a"
Processing: "Gordonia_polyisoprenivorans_VH2"
Processing: "Aeromonas_salmonicida_subsp_salmonicida_A449"
Processing: "Thermodesulfobium_narugense_DSM_14796"
Processing: "Brevibacillus_brevis_NBRC_100599"
Processing: "Spiroplasma_culicicola_AES-1"
Processing: "Isoptericola_variabilis_225"
Processing: "Oscillibacter_valericigenes_Sjm18-20"
Processing: "Desulfocapsa_sulfexigens_DSM_10523"
Processing: "Planktomarina_temperata_RCA23"
Processing: "Marinithermus_hydrothermalis_DSM_14884"
Processing: "Desulfosporosinus_orientis_DSM_765"
Processing: "Halobacillus_halophilus_DSM_2266"
Processing: "Cronobacter_sakazakii_SP291"
Processing: "Chromohalobacter_salexigens_DSM_3043"
Processing: "Sulfurimonas_denitrificans_DSM_1251"
Processing: "Desulfotomaculum_carboxydivorans_CO-1-SRB"
Processing: "Candidatus_Portiera_aleyrodidarum_BT-QVLC"
  Genome name: Sulfuricurvum_kujiense_DSM_16994
  Genome length (bp): 2574824
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Edwardsiella_ictaluri_93-146"
  Genome name: Sulfurimonas_denitrificans_DSM_1251
  Genome length (bp): 2201561
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Acidovorax_citrulli_AAC00-1"
  Genome name: Candidatus_Portiera_aleyrodidarum_BT-QVLC
  Genome length (bp): 350928
  Number of amplicons: 1
  Number of fragments simulated: 2431
Processing: "Bartonella_grahamii_as4aup"
  Genome name: Spiroplasma_culicicola_AES-1
  Genome length (bp): 1175131
  Number of amplicons: 1
  Number of fragments simulated: 8125
Processing: "Mycoplasma_bovoculi_M165_69"
  Genome name: Thermodesulfobium_narugense_DSM_14796
  Genome length (bp): 1898865
  Number of amplicons: 2
  Number of fragments simulated: 13118
Processing: "Clostridiales_genomosp_BVAB3_str_UPII9-5"
  Genome name: Mycoplasma_bovoculi_M165_69
  Genome length (bp): 760240
  Number of amplicons: 1
  Number of fragments simulated: 5275
Processing: "Crinalium_epipsammum_PCC_9333"
  Genome name: Marinithermus_hydrothermalis_DSM_14884
  Genome length (bp): 2269167
  Number of amplicons: 3
  Number of fragments simulated: 15708
Processing: "Herbaspirillum_seropedicae_SmR1"
  Genome name: Desulfotomaculum_carboxydivorans_CO-1-SRB
  Genome length (bp): 2892255
  Number of amplicons: 8
  Number of fragments simulated: 20006
  Genome name: Bartonella_grahamii_as4aup
  Genome length (bp): 2341328
  Number of amplicons: 2
  Number of fragments simulated: 16192
Processing: "Shewanella_baltica_BA175"
Processing: "Streptococcus_anginosus_C238"
  Genome name: Planktomarina_temperata_RCA23
  Genome length (bp): 3288122
  Number of amplicons: 2
  Number of fragments simulated: 22743
  Genome name: Isoptericola_variabilis_225
Processing: "Desulfosporosinus_acidiphilus_SJ4"
  Genome length (bp): 3307740
  Number of amplicons: 3
  Number of fragments simulated: 22873
Processing: "Thermincola_potens_JR"
  Genome name: Edwardsiella_ictaluri_93-146
  Genome length (bp): 3812301
  Number of amplicons: 8
  Number of fragments simulated: 26372
Processing: "Serratia_symbiotica_str_Cinara_cedri"
  Genome name: Desulfocapsa_sulfexigens_DSM_10523
  Genome length (bp): 3986761
  Number of amplicons: 3
  Number of fragments simulated: 27582
  Genome name: Kangiella_koreensis_DSM_16069
  Genome name: Clostridiales_genomosp_BVAB3_str_UPII9-5
  Genome length (bp): 1809746
  Number of amplicons: 2
  Number of fragments simulated: 12551
  Genome length (bp): 2852073
  Number of amplicons: 2
  Number of fragments simulated: 19728
Processing: "Caldicellulosiruptor_kristjanssonii_I77R1B"
Processing: "Corynebacterium_casei_LMG_S-19264"
  Genome name: Croceibacter_atlanticus_HTCC2559
Processing: "Stackebrandtia_nassauensis_DSM_44728"
  Genome length (bp): 2952962
  Number of amplicons: 2
  Number of fragments simulated: 20433
  Genome name: Cronobacter_sakazakii_SP291
  Genome length (bp): 4344092
  Number of amplicons: 7
  Number of fragments simulated: 30002
  Genome name: Oscillibacter_valericigenes_Sjm18-20
Processing: "Caldicellulosiruptor_saccharolyticus_DSM_8903"
  Genome length (bp): 4410036
  Number of amplicons: 3
  Number of fragments simulated: 30462
Processing: "Ignavibacterium_album_JCM_16511"
Processing: "Mycoplasma_hyorhinis_MCLD"
  Genome name: Polymorphum_gilvum_SL003B-26A1
  Genome name: _Cellvibrio_gilvus_ATCC_13127
  Genome length (bp): 4649365
  Number of amplicons: 2
  Number of fragments simulated: 32139
  Genome length (bp): 3526441
  Number of amplicons: 2
  Number of fragments simulated: 24382
Processing: "Pseudonocardia_dioxanivorans_CB1190"
  Genome name: Mycoplasma_hyorhinis_MCLD
  Genome length (bp): 829709
  Number of amplicons: 0
  Number of fragments simulated: 1
  Genome name: Eubacterium_rectale_ATCC_33656
  Genome length (bp): 3449685
  Number of amplicons: 5
  Number of fragments simulated: 23847
Processing: "Haemophilus_somnus_129PT"
Processing: "Pseudomonas_protegens_Cab57"
Processing: "Granulicella_mallensis_MP5ACTX8"
  Genome name: Chromohalobacter_salexigens_DSM_3043
  Genome length (bp): 3696649
  Number of amplicons: 5
  Number of fragments simulated: 25546
Processing: "Bifidobacterium_bifidum_PRL2010"
  Genome name: Streptococcus_anginosus_C238
  Genome length (bp): 2233640
  Number of amplicons: 4
  Number of fragments simulated: 15429
Processing: "Vibrio_tasmaniensis_LGP32"
  Genome name: Halobacillus_halophilus_DSM_2266
  Genome length (bp): 4150632
  Number of amplicons: 7
  Number of fragments simulated: 28720
  Genome name: Serratia_symbiotica_str_Cinara_cedri
  Genome length (bp): 1762765
  Number of amplicons: 1
  Number of fragments simulated: 12198
  Genome name: Desulfosporosinus_orientis_DSM_765
  Genome length (bp): 5863081
  Number of amplicons: 8
  Number of fragments simulated: 40533
Processing: "Kosmotoga_olearia_TBF_19_5_1"
Processing: "Denitrovibrio_acetiphilus_DSM_12809"
  Genome name: Aeromonas_salmonicida_subsp_salmonicida_A449
Processing: "Listeria_ivanovii_subsp_ivanovii_PAM_55"
  Genome length (bp): 4702402
  Number of amplicons: 9
  Number of fragments simulated: 32496
Processing: "Clostridium_perfringens_str_13"
  Genome name: Brevibacillus_brevis_NBRC_100599
  Genome length (bp): 6296436
  Number of amplicons: 15
  Number of fragments simulated: 43535
Processing: "Nocardia_farcinica_IFM_10152"
  Genome name: Thermincola_potens_JR
  Genome length (bp): 3157416
  Number of amplicons: 3
  Number of fragments simulated: 21841
Processing: "Myxococcus_stipitatus_DSM_14675"
  Genome name: Caldicellulosiruptor_kristjanssonii_I77R1B
  Genome length (bp): 2786473
  Number of amplicons: 3
  Number of fragments simulated: 19303
  Genome name: Acidovorax_citrulli_AAC00-1
Processing: "Melissococcus_plutonius_DAT561"
  Genome length (bp): 5352772
  Number of amplicons: 3
  Number of fragments simulated: 37003
Processing: "Borrelia_garinii_PBi"
  Genome name: Haemophilus_somnus_129PT
  Genome length (bp): 2007700
  Number of amplicons: 5
  Number of fragments simulated: 13898
  Genome name: Crinalium_epipsammum_PCC_9333
Processing: "Rickettsia_typhi_str_Wilmington"
  Genome length (bp): 5315554
  Number of amplicons: 4
  Number of fragments simulated: 36741
  Genome name: Gordonia_polyisoprenivorans_VH2
  Genome length (bp): 5669805
  Number of amplicons: 3
  Number of fragments simulated: 39178
Processing: "Geobacillus_thermoleovorans_CCB_US3_UF5"
Processing: "Lactobacillus_gasseri_ADH"
  Genome name: Corynebacterium_casei_LMG_S-19264
  Genome name: Lactobacillus_gasseri_ADH
  Genome length (bp): 38269
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Lactobacillus_fermentum_CECT_5716"
  Genome length (bp): 3113488
  Number of amplicons: 4
  Number of fragments simulated: 21541
  Genome name: Ignavibacterium_album_JCM_16511
  Genome length (bp): 3658997
  Number of amplicons: 1
  Number of fragments simulated: 25278
Processing: "Halomonas_elongata_DSM_2581"
Processing: "Edwardsiella_piscicida_C07-087"
  Genome name: Bifidobacterium_bifidum_PRL2010
  Genome length (bp): 2214656
  Number of amplicons: 3
  Number of fragments simulated: 15306
Processing: "Leptospira_borgpetersenii_serovar_Hardjo-bovis_str_L550"
  Genome name: Caldicellulosiruptor_saccharolyticus_DSM_8903
  Genome length (bp): 2970275
  Number of amplicons: 3
  Number of fragments simulated: 20578
Processing: "Nocardiopsis_alba_ATCC_BAA-2165"
  Genome name: Borrelia_garinii_PBi
  Genome length (bp): 904246
  Number of amplicons: 1
  Number of fragments simulated: 6256
  Genome name: Herbaspirillum_seropedicae_SmR1
Processing: "Propionibacterium_avidum_44067"
  Genome length (bp): 5513887
  Number of amplicons: 3
  Number of fragments simulated: 38084
  Genome name: Listeria_ivanovii_subsp_ivanovii_PAM_55
  Genome length (bp): 2928879
  Number of amplicons: 6
  Number of fragments simulated: 20244
  Genome name: Denitrovibrio_acetiphilus_DSM_12809
  Genome name: Melissococcus_plutonius_DAT561
  Genome name: Rickettsia_typhi_str_Wilmington
  Genome length (bp): 3222077
  Number of amplicons: 2
  Number of fragments simulated: 22303
  Genome length (bp): 1846178
  Number of amplicons: 4
  Number of fragments simulated: 12771
  Genome length (bp): 1111496
  Number of amplicons: 1
  Number of fragments simulated: 7701
  Genome name: Kosmotoga_olearia_TBF_19_5_1
  Genome length (bp): 2302126
  Number of amplicons: 2
  Number of fragments simulated: 15914
Processing: "Anaplasma_centrale_str_Israel"
Processing: "Rickettsia_australis_str_Cutlack"
Processing: "Sulfurihydrogenibium_azorense_Az-Fu1"
Processing: "Salmonella_enterica_subsp_arizonae_serovar_62_z4,z23_-"
Processing: "Alicyclobacillus_acidocaldarius_subsp_acidocaldarius_DSM_446"
  Genome name: Clostridium_perfringens_str_13
  Genome length (bp): 3031430
  Number of amplicons: 9
  Number of fragments simulated: 20959
Processing: "Campylobacter_lari_RM16712"
Processing: "Dyadobacter_fermentans_DSM_18053"
  Genome name: Desulfosporosinus_acidiphilus_SJ4
  Genome name: Campylobacter_lari_RM16712
  Genome length (bp): 1565009
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Oceanithermus_profundus_DSM_14977"
  Genome length (bp): 4926837
  Number of amplicons: 9
  Number of fragments simulated: 34053
Processing: "Bifidobacterium_dentium_Bd1"
  Genome name: Shewanella_baltica_BA175
  Genome length (bp): 5066051
  Number of amplicons: 10
  Number of fragments simulated: 35000
Processing: "Dehalogenimonas_lykanthroporepellens_BL-DC-9"
  Genome name: Rickettsia_australis_str_Cutlack
  Genome length (bp): 1296670
  Number of amplicons: 1
  Number of fragments simulated: 8969
Processing: "Granulicella_tundricola_MP5ACTX9"
  Genome name: Anaplasma_centrale_str_Israel
  Genome length (bp): 1206806
  Number of amplicons: 1
  Number of fragments simulated: 8333
  Genome name: Vibrio_tasmaniensis_LGP32
Processing: "Candidatus_Zinderia_insecticola_CARI"
  Genome length (bp): 4974818
  Number of amplicons: 8
  Number of fragments simulated: 34344
  Genome name: Lactobacillus_fermentum_CECT_5716
Processing: "Desulfovibrio_africanus_str_Walvis_Bay"
  Genome length (bp): 2100449
  Number of amplicons: 5
  Number of fragments simulated: 14530
  Genome name: Nocardia_nova_SH22a
Processing: "Bradyrhizobium_diazoefficiens_USDA_110"
  Genome name: Sulfurihydrogenibium_azorense_Az-Fu1
  Genome length (bp): 1640877
  Number of amplicons: 2
  Number of fragments simulated: 11341
  Genome name: Geobacillus_thermoleovorans_CCB_US3_UF5
  Genome length (bp): 8348532
  Number of amplicons: 3
  Number of fragments simulated: 57750
Processing: "Ilumatobacter_coccineus_YM16-304"
  Genome length (bp): 3596620
  Number of amplicons: 9
  Number of fragments simulated: 24825
  Genome name: Candidatus_Zinderia_insecticola_CARI
  Genome length (bp): 208564
  Number of amplicons: 1
  Number of fragments simulated: 1441
  Genome name: Pseudomonas_protegens_Cab57
  Genome length (bp): 6827892
  Number of amplicons: 5
  Number of fragments simulated: 47214
Processing: "Capnocytophaga_canimorsus_Cc5"
  Genome name: Pseudonocardia_dioxanivorans_CB1190
Processing: "Lysinibacillus_sphaericus_C3-41"
  Genome length (bp): 7096571
  Number of amplicons: 3
  Number of fragments simulated: 49087
Processing: "Mycoplasma_hyopneumoniae_168-L"
Processing: "Aeromonas_veronii_B565"
  Genome name: Edwardsiella_piscicida_C07-087
  Genome length (bp): 3857040
  Number of amplicons: 8
  Number of fragments simulated: 26669
Processing: "Thermus_thermophilus_SG0_5JP17-16"
Processing: "Cronobacter_turicensis_z3032"
  Genome name: Halomonas_elongata_DSM_2581
  Genome name: Alicyclobacillus_acidocaldarius_subsp_acidocaldarius_DSM_446
  Genome length (bp): 3018755
  Number of amplicons: 6
  Number of fragments simulated: 20855
  Genome name: Propionibacterium_avidum_44067
  Genome length (bp): 4061296
  Number of amplicons: 4
  Number of fragments simulated: 28075
  Genome length (bp): 2526138
  Number of amplicons: 3
  Number of fragments simulated: 17466
Processing: "Candidatus_Carsonella_ruddii_CS_isolate_Thao2000"
  Genome name: Dehalogenimonas_lykanthroporepellens_BL-DC-9
  Genome length (bp): 1686510
  Number of amplicons: 1
  Number of fragments simulated: 11656
Processing: "Kocuria_rhizophila_DC2201"
  Genome name: Nocardia_farcinica_IFM_10152
Processing: "Azotobacter_vinelandii_CA"
  Genome length (bp): 6021225
  Number of amplicons: 3
  Number of fragments simulated: 41597
  Genome name: Candidatus_Carsonella_ruddii_CS_isolate_Thao2000
  Genome length (bp): 162504
  Number of amplicons: 1
  Number of fragments simulated: 1131
Processing: "Thermodesulfovibrio_yellowstonii_DSM_11347"
  Genome name: Bifidobacterium_dentium_Bd1
  Genome length (bp): 2636367
  Number of amplicons: 4
  Number of fragments simulated: 18212
Processing: "Desulfovibrio_magneticus_RS-1"
Processing: "Rhodoferax_ferrireducens_T118"
Processing: "Vibrio_parahaemolyticus_O1_Kuk_str_FDA_R31"
  Genome name: Granulicella_mallensis_MP5ACTX8
  Genome name: Oceanithermus_profundus_DSM_14977
  Genome length (bp): 6237577
  Number of amplicons: 1
  Number of fragments simulated: 43103
  Genome name: Mycoplasma_hyopneumoniae_168-L
  Genome length (bp): 2303940
  Number of amplicons: 2
  Number of fragments simulated: 15954
  Genome length (bp): 921093
  Number of amplicons: 1
  Number of fragments simulated: 6354
Processing: "Vibrio_furnissii_NCTC_11218"
  Genome name: Stackebrandtia_nassauensis_DSM_44728
  Genome length (bp): 6841557
  Number of amplicons: 2
  Number of fragments simulated: 47318
Processing: "Cardinium_endosymbiont_cEper1_of_Encarsia_pergandiella"
Processing: "Staphylococcus_haemolyticus_JCSC1435"
Processing: "Candidatus_Solibacter_usitatus_Ellin6076"
  Genome name: Thermus_thermophilus_SG0_5JP17-16
  Genome length (bp): 1863201
  Number of amplicons: 2
  Number of fragments simulated: 12883
Processing: "Cyanobacterium_stanieri_PCC_7202"
  Genome name: Cardinium_endosymbiont_cEper1_of_Encarsia_pergandiella
  Genome length (bp): 887130
  Number of amplicons: 1
  Number of fragments simulated: 6122
Processing: "Clostridium_cellulovorans_743B"
  Genome name: Granulicella_tundricola_MP5ACTX9
  Genome length (bp): 4309153
  Number of amplicons: 1
  Number of fragments simulated: 29762
  Genome name: Thermodesulfovibrio_yellowstonii_DSM_11347
  Genome length (bp): 2003803
  Number of amplicons: 1
  Number of fragments simulated: 13890
Processing: "Lactobacillus_ruminis_ATCC_27782"
Processing: "Mycobacterium_africanum_GM041182"
  Genome name: Desulfovibrio_africanus_str_Walvis_Bay
  Genome length (bp): 4200534
  Number of amplicons: 3
  Number of fragments simulated: 29018
Processing: "Tropheryma_whipplei_str_Twist"
  Genome name: Capnocytophaga_canimorsus_Cc5
  Genome name: Kocuria_rhizophila_DC2201
  Genome length (bp): 2571406
  Number of amplicons: 3
  Number of fragments simulated: 17766
  Genome length (bp): 2697540
  Number of amplicons: 3
  Number of fragments simulated: 18622
Processing: "Candidatus_Chloracidobacterium_thermophilum_B"
Processing: "Nakamurella_multipartita_DSM_44233"
  Genome name: Salmonella_enterica_subsp_arizonae_serovar_62_z4,z23_-
  Genome length (bp): 4600800
  Number of amplicons: 7
  Number of fragments simulated: 31744
  Genome name: Leptospira_borgpetersenii_serovar_Hardjo-bovis_str_L550
  Genome name: Ilumatobacter_coccineus_YM16-304
Processing: "Bacillus_infantis_NRRL_B-14911"
  Genome length (bp): 3931782
  Number of amplicons: 2
  Number of fragments simulated: 27213
  Genome length (bp): 4830181
  Number of amplicons: 2
  Number of fragments simulated: 33319
Processing: "Fimbriimonas_ginsengisoli_Gsoil_348"
  Genome name: Lysinibacillus_sphaericus_C3-41
  Genome length (bp): 4639821
  Number of amplicons: 10
  Number of fragments simulated: 32021
  Genome name: Tropheryma_whipplei_str_Twist
  Genome length (bp): 927303
  Number of amplicons: 1
  Number of fragments simulated: 6422
Processing: "Clostridium_lentocellum_DSM_5427"
  Genome name: Nocardiopsis_alba_ATCC_BAA-2165
  Genome name: Staphylococcus_haemolyticus_JCSC1435
  Genome name: Aeromonas_veronii_B565
Processing: "Aromatoleum_aromaticum_EbN1"
  Genome length (bp): 2685015
  Number of amplicons: 5
  Number of fragments simulated: 18530
  Genome length (bp): 4551783
  Number of amplicons: 10
  Number of fragments simulated: 31408
Processing: "Cellulophaga_algicola_DSM_14237"
  Genome length (bp): 5848211
  Number of amplicons: 5
  Number of fragments simulated: 40421
Processing: "Bibersteinia_trehalosi_USDA-ARS-USMARC-189"
  Genome name: Cronobacter_turicensis_z3032
Processing: "Beijerinckia_indica_subsp_indica_ATCC_9039"
  Genome length (bp): 4384463
  Number of amplicons: 7
  Number of fragments simulated: 30267
Processing: "Marivirga_tractuosa_DSM_4126"
  Genome name: Myxococcus_stipitatus_DSM_14675
  Genome length (bp): 10350586
  Number of amplicons: 3
  Number of fragments simulated: 71540
Processing: "Citrobacter_freundii_CFNIH1"
  Genome name: Lactobacillus_ruminis_ATCC_27782
  Genome length (bp): 2066652
  Number of amplicons: 6
  Number of fragments simulated: 14315
  Genome name: Cyanobacterium_stanieri_PCC_7202
  Genome length (bp): 3163381
  Number of amplicons: 3
  Number of fragments simulated: 21879
Processing: "Pelotomaculum_thermopropionicum_SI"
Processing: "Thermoanaerobacter_brockii_subsp_finnii_Ako-1"
Processing: "Desulfitobacterium_hafniense_DCB-2"
  Genome name: Azotobacter_vinelandii_CA
  Genome name: Dyadobacter_fermentans_DSM_18053
  Genome length (bp): 5366370
  Number of amplicons: 6
  Number of fragments simulated: 37068
  Genome length (bp): 6967790
  Number of amplicons: 4
  Number of fragments simulated: 48163
Processing: "Streptomyces_collinus_Tu_365"
  Genome name: Vibrio_parahaemolyticus_O1_Kuk_str_FDA_R31
  Genome length (bp): 5223562
  Number of amplicons: 12
  Number of fragments simulated: 36155
Processing: "Chlamydophila_abortus_S26_3"
  Genome name: Chlamydophila_abortus_S26_3
  Genome length (bp): 1144377
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Mycoplasma_californicum_HAZ160_1"
Processing: "Lactobacillus_sanfranciscensis_TMW_1_1304"
  Genome name: Desulfovibrio_magneticus_RS-1
  Genome length (bp): 5248049
  Number of amplicons: 3
  Number of fragments simulated: 36293
  Genome name: Rhodoferax_ferrireducens_T118
Processing: "Vibrio_tubiashii_ATCC_19109"
  Genome length (bp): 4712337
  Number of amplicons: 2
  Number of fragments simulated: 32525
Processing: "Geobacillus_thermoglucosidasius_C56-YS93"
  Genome name: Bibersteinia_trehalosi_USDA-ARS-USMARC-189
  Genome length (bp): 2454127
  Number of amplicons: 6
  Number of fragments simulated: 16949
Processing: "Borrelia_burgdorferi_CA382"
  Genome name: Mycoplasma_californicum_HAZ160_1
  Genome length (bp): 799088
  Number of amplicons: 2
  Number of fragments simulated: 5526
Processing: "Mycoplasma_penetrans_HF-2"
  Genome name: Pelotomaculum_thermopropionicum_SI
  Genome length (bp): 3025375
  Number of amplicons: 2
  Number of fragments simulated: 20912
  Genome name: Mycobacterium_africanum_GM041182
Processing: "Mycoplasma_crocodyli_MP145"
  Genome length (bp): 4389314
  Number of amplicons: 1
  Number of fragments simulated: 30306
  Genome name: Mycoplasma_penetrans_HF-2
  Genome length (bp): 1358633
  Number of amplicons: 0
  Number of fragments simulated: 1
  Genome name: Aromatoleum_aromaticum_EbN1
  Genome length (bp): 4296230
  Number of amplicons: 4
  Number of fragments simulated: 29700
Processing: "Chlamydophila_felis_Fe_C-56"
Processing: "Slackia_heliotrinireducens_DSM_20476"
Processing: "Deferribacter_desulfuricans_SSM1"
  Genome name: Chlamydophila_felis_Fe_C-56
  Genome name: Beijerinckia_indica_subsp_indica_ATCC_9039
  Genome length (bp): 1166239
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Catenulispora_acidiphila_DSM_44928"
  Genome length (bp): 4170153
  Number of amplicons: 3
  Number of fragments simulated: 28880
  Genome name: Thermoanaerobacter_brockii_subsp_finnii_Ako-1
  Genome name: Vibrio_furnissii_NCTC_11218
  Genome length (bp): 2344824
  Number of amplicons: 4
  Number of fragments simulated: 16217
  Genome length (bp): 4916408
  Number of amplicons: 7
  Number of fragments simulated: 34015
  Genome name: Clostridium_cellulovorans_743B
Processing: "Bacteroides_vulgatus_ATCC_8482"
  Genome length (bp): 5262222
  Number of amplicons: 9
  Number of fragments simulated: 36318
  Genome name: Lactobacillus_sanfranciscensis_TMW_1_1304
Processing: "Bartonella_australis_Aust_NH1"
  Genome length (bp): 1298316
  Number of amplicons: 7
  Number of fragments simulated: 8999
  Genome name: Borrelia_burgdorferi_CA382
  Genome length (bp): 910736
  Number of amplicons: 1
  Number of fragments simulated: 6301
Processing: "Gallionella_capsiferriformans_ES-2"
  Genome name: Cellulophaga_algicola_DSM_14237
  Genome length (bp): 4888353
  Number of amplicons: 5
  Number of fragments simulated: 33813
Processing: "Glaciecola_psychrophila_170"
Processing: "Francisella_tularensis_subsp_tularensis_TI0902"
Processing: "Selenomonas_ruminantium_subsp_lactilytica_TAM6421"
  Genome name: Mycoplasma_crocodyli_MP145
  Genome length (bp): 934379
  Number of amplicons: 2
  Number of fragments simulated: 6485
Processing: "Mycobacterium_chubuense_NBB4"
  Genome name: Nakamurella_multipartita_DSM_44233
Processing: "Corynebacterium_resistens_DSM_45100"
  Genome length (bp): 6060298
  Number of amplicons: 2
  Number of fragments simulated: 41916
Processing: "Myxococcus_fulvus_HW-1"
  Genome name: Candidatus_Chloracidobacterium_thermophilum_B
  Genome length (bp): 3695372
  Number of amplicons: 1
  Number of fragments simulated: 25587
  Genome name: Bacillus_infantis_NRRL_B-14911
  Genome length (bp): 4884713
  Number of amplicons: 9
  Number of fragments simulated: 33769
Processing: "Thermosipho_melanesiensis_BI429"
  Genome name: Bradyrhizobium_diazoefficiens_USDA_110
  Genome name: Desulfitobacterium_hafniense_DCB-2
  Genome length (bp): 9105828
  Number of amplicons: 1
  Number of fragments simulated: 62960
Processing: "Mycobacterium_canettii_CIPT_140010059"
  Genome length (bp): 5279134
  Number of amplicons: 5
  Number of fragments simulated: 36530
Processing: "Mycoplasma_capricolum_subsp_capricolum_ATCC_27343"
  Genome name: Clostridium_lentocellum_DSM_5427
  Genome length (bp): 4714237
  Number of amplicons: 10
  Number of fragments simulated: 32626
  Genome name: Marivirga_tractuosa_DSM_4126
Processing: "Nautilia_profundicola_AmH"
  Genome length (bp): 4511574
  Number of amplicons: 2
  Number of fragments simulated: 31147
  Genome name: Deferribacter_desulfuricans_SSM1
  Genome length (bp): 2234389
  Number of amplicons: 2
  Number of fragments simulated: 15459
Processing: "Staphylococcus_saprophyticus_subsp_saprophyticus_ATCC_15305"
  Genome name: Fimbriimonas_ginsengisoli_Gsoil_348
  Genome name: Citrobacter_freundii_CFNIH1
  Genome length (bp): 5231762
  Number of amplicons: 2
  Number of fragments simulated: 36187
  Genome length (bp): 5099034
  Number of amplicons: 8
  Number of fragments simulated: 35290
  Genome name: Nautilia_profundicola_AmH
  Genome length (bp): 1676444
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Caldicellulosiruptor_bescii_DSM_6725"
Processing: "Chlamydia_muridarum_str_Nigg3_CMUT3-5"
  Genome name: Bartonella_australis_Aust_NH1
  Genome length (bp): 1596490
  Number of amplicons: 2
  Number of fragments simulated: 11064
  Genome name: Chlamydia_muridarum_str_Nigg3_CMUT3-5
  Genome length (bp): 1072951
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Arthrobacter_phenanthrenivorans_Sphe3"
Processing: "Desulfurella_acetivorans_A63"
Processing: "Rhodomicrobium_vannielii_ATCC_17100"
Processing: "Aggregatibacter_aphrophilus_NJ8700"
Processing: "Thermotoga_thermarum_DSM_5069"
  Genome name: Mycoplasma_capricolum_subsp_capricolum_ATCC_27343
  Genome length (bp): 1010023
  Number of amplicons: 2
  Number of fragments simulated: 6999
Processing: "Candidatus_Ishikawaella_capsulata_Mpkobe"
  Genome name: Francisella_tularensis_subsp_tularensis_TI0902
  Genome length (bp): 1892744
  Number of amplicons: 3
  Number of fragments simulated: 13103
Processing: "Blattabacterium_sp_Cryptocercus_punctulatus_str_Cpu"
  Genome name: Corynebacterium_resistens_DSM_45100
  Genome length (bp): 2601311
  Number of amplicons: 3
  Number of fragments simulated: 17949
Processing: "Candidatus_Liberibacter_asiaticus_str_psy62"
  Genome name: Slackia_heliotrinireducens_DSM_20476
  Genome name: Geobacillus_thermoglucosidasius_C56-YS93
  Genome name: Selenomonas_ruminantium_subsp_lactilytica_TAM6421
  Genome length (bp): 3165038
  Number of amplicons: 2
  Number of fragments simulated: 21901
  Genome length (bp): 3893306
  Number of amplicons: 10
  Number of fragments simulated: 26938
  Genome length (bp): 3003680
  Number of amplicons: 7
  Number of fragments simulated: 20768
Processing: "Simkania_negevensis_Z"
  Genome name: Vibrio_tubiashii_ATCC_19109
  Genome length (bp): 5061072
  Number of amplicons: 10
  Number of fragments simulated: 34950
Processing: "Chlorobium_luteolum_DSM_273"
  Genome name: Candidatus_Solibacter_usitatus_Ellin6076
Processing: "Thermoanaerobacterium_saccharolyticum_JW_SL-YS485"
  Genome name: Thermosipho_melanesiensis_BI429
  Genome name: Candidatus_Ishikawaella_capsulata_Mpkobe
  Genome name: Simkania_negevensis_Z
  Genome length (bp): 745590
  Number of amplicons: 3
  Number of fragments simulated: 5144
  Genome length (bp): 1915238
  Number of amplicons: 4
  Number of fragments simulated: 13273
  Genome length (bp): 2496337
  Number of amplicons: 0
  Number of fragments simulated: 1
  Genome length (bp): 9965640
  Number of amplicons: 2
  Number of fragments simulated: 68933
  Genome name: Blattabacterium_sp_Cryptocercus_punctulatus_str_Cpu
  Genome length (bp): 605745
  Number of amplicons: 1
  Number of fragments simulated: 4199
Processing: "Cyanobium_gracile_PCC_6307"
  Genome name: Gallionella_capsiferriformans_ES-2
Processing: "Corynebacterium_glycinophilum_AJ_3170"
  Genome length (bp): 3162471
  Number of amplicons: 3
  Number of fragments simulated: 21882
Processing: "Chitinophaga_pinensis_DSM_2588"
Processing: "Rhodobacter_capsulatus_SB_1003"
  Genome name: Bacteroides_vulgatus_ATCC_8482
Processing: "Aeromonas_media_WS"
  Genome name: Desulfurella_acetivorans_A63
  Genome length (bp): 1816487
  Number of amplicons: 2
  Number of fragments simulated: 12551
  Genome length (bp): 5163189
  Number of amplicons: 7
  Number of fragments simulated: 35621
Processing: "Solibacillus_silvestris_StLB046"
  Genome name: Candidatus_Liberibacter_asiaticus_str_psy62
  Genome length (bp): 1227328
  Number of amplicons: 3
  Number of fragments simulated: 8484
  Genome name: Thermotoga_thermarum_DSM_5069
  Genome length (bp): 2039943
  Number of amplicons: 1
  Number of fragments simulated: 14083
Processing: "Elusimicrobium_minutum_Pei191"
Processing: "Nitrosococcus_oceani_ATCC_19707"
Processing: "Neisseria_gonorrhoeae_FA_1090"
Processing: "Niastella_koreensis_GR20-10"
Processing: "Arcanobacterium_haemolyticum_DSM_20595"
  Genome name: Streptomyces_collinus_Tu_365
  Genome name: Staphylococcus_saprophyticus_subsp_saprophyticus_ATCC_15305
  Genome length (bp): 8272925
  Number of amplicons: 6
  Number of fragments simulated: 57237
  Genome length (bp): 2516575
  Number of amplicons: 6
  Number of fragments simulated: 17397
  Genome name: Aggregatibacter_aphrophilus_NJ8700
  Genome length (bp): 2313035
  Number of amplicons: 6
  Number of fragments simulated: 15991
Processing: "Rickettsia_peacockii_str_Rustic"
  Genome name: Glaciecola_psychrophila_170
  Genome length (bp): 5413691
  Number of amplicons: 6
  Number of fragments simulated: 37517
Processing: "Dickeya_dadantii_3937"
Processing: "Waddlia_chondrophila_WSU_86-1044"
  Genome name: Mycobacterium_chubuense_NBB4
  Genome length (bp): 5583723
  Number of amplicons: 2
  Number of fragments simulated: 38523
Processing: "Oceanobacillus_iheyensis_HTE831"
  Genome name: Waddlia_chondrophila_WSU_86-1044
  Genome name: Caldicellulosiruptor_bescii_DSM_6725
  Genome length (bp): 2116312
  Number of amplicons: 0
  Number of fragments simulated: 1
  Genome length (bp): 2919718
  Number of amplicons: 3
  Number of fragments simulated: 20194
Processing: "Porphyromonas_gingivalis_W83"
Processing: "Alkalilimnicola_ehrlichii_MLHE-1"
  Genome name: Oceanobacillus_iheyensis_HTE831
  Genome length (bp): 3630528
  Number of amplicons: 0
  Number of fragments simulated: 1
Processing: "Desulfovibrio_aespoeensis_Aspo-2"
Processing: "Allochromatium_vinosum_DSM_180"
  Genome name: Rhodomicrobium_vannielii_ATCC_17100
  Genome length (bp): 4014469
  Number of amplicons: 2
  Number of fragments simulated: 27698
Processing: "Bacillus_licheniformis_9945A"
  Genome name: Mycobacterium_canettii_CIPT_140010059
  Genome length (bp): 4482059
  Number of amplicons: 1
  Number of fragments simulated: 30982
Processing: "Deinococcus_gobiensis_I-0"
  Genome name: Elusimicrobium_minutum_Pei191
  Genome name: Arthrobacter_phenanthrenivorans_Sphe3
  Genome length (bp): 1643562
  Number of amplicons: 1
  Number of fragments simulated: 11345
Processing: "Belliella_baltica_DSM_15883"
  Genome length (bp): 4250414
  Number of amplicons: 4
  Number of fragments simulated: 29375
  Genome name: Rickettsia_peacockii_str_Rustic
  Genome length (bp): 1288492
  Number of amplicons: 1
  Number of fragments simulated: 8915
  Genome name: Chlorobium_luteolum_DSM_273
Processing: "Marinobacter_hydrocarbonoclasticus_ATCC_49840"
  Genome length (bp): 2364842
  Number of amplicons: 2
  Number of fragments simulated: 16377
Processing: "Ethanoligenens_harbinense_YUAN-3"
Processing: "Stigmatella_aurantiaca_DW4_3-1"
  Genome name: Neisseria_gonorrhoeae_FA_1090
  Genome length (bp): 2153922
  Number of amplicons: 4
  Number of fragments simulated: 14929
Processing: "Blattabacterium_sp_Periplaneta_americana_str_BPLAN"
  Genome name: Cyanobium_gracile_PCC_6307
  Genome length (bp): 3342364
  Number of amplicons: 2
  Number of fragments simulated: 23080
Processing: "Deinococcus_proteolyticus_MRP"
  Genome name: Arcanobacterium_haemolyticum_DSM_20595
  Genome length (bp): 1986154
  Number of amplicons: 4
  Number of fragments simulated: 13709
Processing: "Methylovorus_glucosetrophus_SIP3-4"
  Genome name: Corynebacterium_glycinophilum_AJ_3170
  Genome length (bp): 3509786
  Number of amplicons: 4
  Number of fragments simulated: 24251
  Genome name: Blattabacterium_sp_Periplaneta_americana_str_BPLAN
  Genome length (bp): 636994
  Number of amplicons: 1
  Number of fragments simulated: 4416
Processing: "Streptococcus_constellatus_subsp_pharyngis_C1050"
Processing: "Salinispora_tropica_CNB-440"
  Genome name: Porphyromonas_gingivalis_W83
  Genome length (bp): 2343476
  Number of amplicons: 4
  Number of fragments simulated: 16197
Processing: "Burkholderia_mallei_SAVP1"
  Genome name: Thermoanaerobacterium_saccharolyticum_JW_SL-YS485
  Genome length (bp): 2768468
  Number of amplicons: 5
  Number of fragments simulated: 19134
Processing: "Pelagibacterium_halotolerans_B2"
  Genome name: Rhodobacter_capsulatus_SB_1003
  Genome length (bp): 3738958
  Number of amplicons: 4
  Number of fragments simulated: 25800
Processing: "Herpetosiphon_aurantiacus_DSM_785"
  Genome name: Solibacillus_silvestris_StLB046
  Genome length (bp): 3969327
  Number of amplicons: 11
  Number of fragments simulated: 27459
  Genome name: Allochromatium_vinosum_DSM_180
  Genome length (bp): 3526903
  Number of amplicons: 3
  Number of fragments simulated: 24349
Processing: "Legionella_oakridgensis_ATCC_33761_DSM_21215"
  Genome name: Desulfovibrio_aespoeensis_Aspo-2
  Genome length (bp): 3629109
  Number of amplicons: 2
  Number of fragments simulated: 25057
  Genome name: Deinococcus_proteolyticus_MRP
Processing: "Ramlibacter_tataouinensis_TTB310"
  Genome length (bp): 2147060
  Number of amplicons: 3
  Number of fragments simulated: 14833
  Genome name: Nitrosococcus_oceani_ATCC_19707
  Genome name: Aeromonas_media_WS
Processing: "Desulfobacca_acetoxidans_DSM_11109"
  Genome length (bp): 3481691
  Number of amplicons: 2
  Number of fragments simulated: 24033
  Genome name: Deinococcus_gobiensis_I-0
  Genome length (bp): 4777154
  Number of amplicons: 11
  Number of fragments simulated: 32982
Processing: "Saprospira_grandis_str_Lewin"
  Genome length (bp): 3137147
  Number of amplicons: 5
  Number of fragments simulated: 21664
  Genome name: Ethanoligenens_harbinense_YUAN-3
  Genome length (bp): 3008576
  Number of amplicons: 3
  Number of fragments simulated: 20787
Processing: "Moorella_thermoacetica_ATCC_39073"
Processing: "Chlorobium_phaeovibrioides_DSM_265"
  Genome name: Alkalilimnicola_ehrlichii_MLHE-1
Processing: "Amycolatopsis_orientalis_HCCB10007"
  Genome length (bp): 3275944
  Number of amplicons: 2
  Number of fragments simulated: 22625
Processing: "Xanthomonas_axonopodis_Xac29-1"
  Genome name: Bacillus_licheniformis_9945A
  Genome length (bp): 4376305
  Number of amplicons: 7
  Number of fragments simulated: 30256
  Genome name: Myxococcus_fulvus_HW-1
Processing: "Terriglobus_saanensis_SP1PR4"
Processing: "Microlunatus_phosphovorus_NM-1"
  Genome length (bp): 9003593
  Number of amplicons: 3
  Number of fragments simulated: 62221
  Genome name: Streptococcus_constellatus_subsp_pharyngis_C1050
  Genome length (bp): 1991156
  Number of amplicons: 4
  Number of fragments simulated: 13747
  Genome name: Belliella_baltica_DSM_15883
  Genome length (bp): 4196595
  Number of amplicons: 4
  Number of fragments simulated: 29015
Processing: "Rhodothermus_marinus_DSM_4252"
Processing: "Komagataeibacter_xylinus_E25"
  Genome name: Dickeya_dadantii_3937
  Genome name: Methylovorus_glucosetrophus_SIP3-4
Processing: "Streptococcus_gordonii_str_Challis_substr_CH1"
  Genome length (bp): 4922802
  Number of amplicons: 7
  Number of fragments simulated: 33990
  Genome length (bp): 2995511
  Number of amplicons: 2
  Number of fragments simulated: 20672
Processing: "Phenylobacterium_zucineum_HLK1"
  Genome name: Catenulispora_acidiphila_DSM_44928
Processing: "Sanguibacter_keddieii_DSM_10542"
  Genome name: Phenylobacterium_zucineum_HLK1
  Genome length (bp): 10467782
  Number of amplicons: 3
  Number of fragments simulated: 72373
  Genome name: Marinobacter_hydrocarbonoclasticus_ATCC_49840
  Genome length (bp): 3996255
  Number of amplicons: 0
  Number of fragments simulated: 1
  Genome length (bp): 3989480
  Number of amplicons: 3
  Number of fragments simulated: 27554
Processing: "Riemerella_anatipestifer_RA-CH-1"
Processing: "Caldicellulosiruptor_owensensis_OL"
Processing: "Xanthomonas_axonopodis_pv_citrumelo_F1"
  Genome name: Legionella_oakridgensis_ATCC_33761_DSM_21215
  Genome length (bp): 2722964
  Number of amplicons: 3
  Number of fragments simulated: 18813
Processing: "Bacillus_coagulans_36D1"
  Genome name: Chlorobium_phaeovibrioides_DSM_265
  Genome length (bp): 1966858
  Number of amplicons: 1
  Number of fragments simulated: 13568
Processing: "Verminephrobacter_eiseniae_EF01-2"
  Genome name: Desulfobacca_acetoxidans_DSM_11109
  Genome length (bp): 3282536
  Number of amplicons: 1
  Number of fragments simulated: 22674
Processing: "Roseiflexus_castenholzii_DSM_13941"
  Genome name: Salinispora_tropica_CNB-440
  Genome length (bp): 5183331
  Number of amplicons: 3
  Number of fragments simulated: 35843
Processing: "Ralstonia_eutropha_JMP134"
  Genome name: Ramlibacter_tataouinensis_TTB310
  Genome length (bp): 4070193
  Number of amplicons: 1
  Number of fragments simulated: 28124
Processing: "Legionella_longbeachae_NSW150"
  Genome name: Streptococcus_gordonii_str_Challis_substr_CH1
  Genome length (bp): 2196662
  Number of amplicons: 4
  Number of fragments simulated: 15178
Processing: "Mycobacterium_abscessus_subsp_bolletii_103"
  Genome name: Moorella_thermoacetica_ATCC_39073
  Genome length (bp): 2628784
  Number of amplicons: 1
  Number of fragments simulated: 18159
Processing: "Sinorhizobium_meliloti_Rm41"
  Genome name: Pelagibacterium_halotolerans_B2
  Genome name: Saprospira_grandis_str_Lewin
  Genome length (bp): 3944837
  Number of amplicons: 2
  Number of fragments simulated: 27248
  Genome length (bp): 4345237
  Number of amplicons: 3
  Number of fragments simulated: 30032
Processing: "Halorhodospira_halophila_SL1"
Processing: "Pseudomonas_poae_RE*1-1-14"
  Genome name: Chitinophaga_pinensis_DSM_2588
  Genome length (bp): 9127347
  Number of amplicons: 6
  Number of fragments simulated: 63070
  Genome name: Rhodothermus_marinus_DSM_4252
  Genome length (bp): 3261604
  Number of amplicons: 1
  Number of fragments simulated: 22589
  Genome name: Burkholderia_mallei_SAVP1
  Genome length (bp): 5232401
  Number of amplicons: 5
  Number of fragments simulated: 36158
Processing: "Saccharothrix_espanaensis_DSM_44229"
Processing: "Candidatus_Arthromitus_sp_SFB-mouse-Yit"
Processing: "Spiroplasma_sabaudiense_Ar-1343"
  Genome name: Xanthomonas_axonopodis_Xac29-1
  Genome length (bp): 5153455
  Number of amplicons: 2
  Number of fragments simulated: 35634
  Genome name: Caldicellulosiruptor_owensensis_OL
  Genome length (bp): 2428903
  Number of amplicons: 3
  Number of fragments simulated: 16794
Processing: "Bartonella_tribocorum_CIP_105476"
  Genome name: Riemerella_anatipestifer_RA-CH-1
  Genome length (bp): 2309519
  Number of amplicons: 3
  Number of fragments simulated: 15956
Processing: "Gramella_forsetii_KT0803"
Processing: "Burkholderia_cenocepacia_J2315"
  Genome name: Komagataeibacter_xylinus_E25
  Genome length (bp): 3447725
  Number of amplicons: 5
  Number of fragments simulated: 23811
Processing: "Ehrlichia_canis_str_Jake"
  Genome name: Microlunatus_phosphovorus_NM-1
  Genome length (bp): 5683123
  Number of amplicons: 1
  Number of fragments simulated: 39320
  Genome name: Spiroplasma_sabaudiense_Ar-1343
  Genome length (bp): 1075953
  Number of amplicons: 2
  Number of fragments simulated: 7433
Processing: "Thermobifida_fusca_YX"
Processing: "Streptococcus_pasteurianus_ATCC_43144"
  Genome name: Sanguibacter_keddieii_DSM_10542
  Genome length (bp): 4253413
  Number of amplicons: 4
  Number of fragments simulated: 29427
Processing: "Streptococcus_parauberis_NCFD_2020"
  Genome name: Bacillus_coagulans_36D1
  Genome name: Halorhodospira_halophila_SL1
  Genome length (bp): 2678452
  Number of amplicons: 2
  Number of fragments simulated: 18507
  Genome length (bp): 3552226
  Number of amplicons: 10
  Number of fragments simulated: 24524
Processing: "Rhizobium_etli_CFN_42"
Processing: "Mycoplasma_pneumoniae_309"
Processing: "Rhodobacter_sphaeroides_WS8N"
  Genome name: Candidatus_Arthromitus_sp_SFB-mouse-Yit
  Genome length (bp): 1586397
  Number of amplicons: 5
  Number of fragments simulated: 10989
  Genome name: Niastella_koreensis_GR20-10
  Genome length (bp): 9033684
  Number of amplicons: 3
  Number of fragments simulated: 62412
  Genome name: Mycoplasma_pneumoniae_309
  Genome length (bp): 817176
  Number of amplicons: 0
  Number of fragments simulated: 1
  Genome name: Terriglobus_saanensis_SP1PR4
  Genome length (bp): 5095226
  Number of amplicons: 1
  Number of fragments simulated: 35206
  Genome name: Legionella_longbeachae_NSW150
  Genome length (bp): 4077332
  Number of amplicons: 4
  Number of fragments simulated: 28187
Traceback (most recent call last):
  File "/home/nick/notebook/SIPSim/bin/fragGC.py", line 218, in <module>
    processes=int(args['--np']))
  File "/opt/anaconda/lib/python2.7/site-packages/parmap.py", line 169, in starmap
    chunksize)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 251, in map
    return self.map_async(func, iterable, chunksize).get()
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 558, in get
    Processing: "Rhizobium_leguminosarum_bv_viciae_3841"
  Genome name: Herpetosiphon_aurantiacus_DSM_785
raise self._value
ValueError: cannot mmap an empty file
  Genome length (bp): 6346587
  Number of amplicons: 5
  Number of fragments simulated: 43932
  Genome name: Ehrlichia_canis_str_Jake
  Genome length (bp): 1315030
  Number of amplicons: 1
  Number of fragments simulated: 9104
  Genome name: Bartonella_tribocorum_CIP_105476
  Genome length (bp): 2619061
  Number of amplicons: 2
  Number of fragments simulated: 18142
  Genome name: Roseiflexus_castenholzii_DSM_13941
  Genome length (bp): 5723298
  Number of amplicons: 2
  Number of fragments simulated: 39609
  Genome name: Sinorhizobium_meliloti_Rm41
  Genome length (bp): 3679105
  Number of amplicons: 3
  Number of fragments simulated: 25472
  Genome name: Mycobacterium_abscessus_subsp_bolletii_103
  Genome name: Streptococcus_pasteurianus_ATCC_43144
  Genome length (bp): 2100077
  Number of amplicons: 5
  Number of fragments simulated: 14503
  Genome length (bp): 5051394
  Number of amplicons: 1
  Number of fragments simulated: 34923
  Genome name: Verminephrobacter_eiseniae_EF01-2
  Genome name: Xanthomonas_axonopodis_pv_citrumelo_F1
  Genome length (bp): 5566749
  Number of amplicons: 3
  Number of fragments simulated: 38531
  Genome length (bp): 4967469
  Number of amplicons: 2
  Number of fragments simulated: 34353
  Genome name: Streptococcus_parauberis_NCFD_2020
  Genome length (bp): 2164480
  Number of amplicons: 5
  Number of fragments simulated: 14953
  Genome name: Stigmatella_aurantiaca_DW4_3-1
  Genome length (bp): 10260756
  Number of amplicons: 2
  Number of fragments simulated: 70809
  Genome name: Pseudomonas_poae_RE*1-1-14
  Genome length (bp): 5512241
  Number of amplicons: 5
  Number of fragments simulated: 38039
  Genome name: Gramella_forsetii_KT0803
  Genome length (bp): 3798465
  Number of amplicons: 3
  Number of fragments simulated: 26263
  Genome name: Thermobifida_fusca_YX
  Genome length (bp): 3642249
  Number of amplicons: 4
  Number of fragments simulated: 25205
  Genome name: Amycolatopsis_orientalis_HCCB10007
  Genome length (bp): 8948591
  Number of amplicons: 4
  Number of fragments simulated: 61822
  Genome name: Ralstonia_eutropha_JMP134
  Genome name: Rhodobacter_sphaeroides_WS8N
  Genome length (bp): 4107586
  Number of amplicons: 3
  Number of fragments simulated: 28406
  Genome length (bp): 6532685
  Number of amplicons: 6
  Number of fragments simulated: 45153
  Genome name: Rhizobium_leguminosarum_bv_viciae_3841
  Genome length (bp): 5927163
  Number of amplicons: 3
  Number of fragments simulated: 40979
  Genome name: Saccharothrix_espanaensis_DSM_44229
  Genome length (bp): 9360653
  Number of amplicons: 4
  Number of fragments simulated: 64701
  Genome name: Burkholderia_cenocepacia_J2315
  Genome length (bp): 7963121
  Number of amplicons: 6
  Number of fragments simulated: 55052
^CError in atexit._run_exitfuncs:
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
Process PoolWorker-17:
Process PoolWorker-20:
Process PoolWorker-23:
Process PoolWorker-13:
Process PoolWorker-21:
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
  File "/home/nick/notebook/SIPSim/SIPSim", line 42, in <module>
Process PoolWorker-7:
Traceback (most recent call last):
Process PoolWorker-10:
Process PoolWorker-3:
Traceback (most recent call last):
Process PoolWorker-8:
Traceback (most recent call last):
      File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Process PoolWorker-22:
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Process PoolWorker-15:
Process PoolWorker-5:
Process PoolWorker-2:
Process PoolWorker-11:
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Process PoolWorker-24:
Process PoolWorker-6:
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Process PoolWorker-4:
Traceback (most recent call last):
Traceback (most recent call last):
Process PoolWorker-14:
Process PoolWorker-19:
Traceback (most recent call last):
Process PoolWorker-1:
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Traceback (most recent call last):
Traceback (most recent call last):
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Traceback (most recent call last):
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Process PoolWorker-16:
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Traceback (most recent call last):
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
Traceback (most recent call last):
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
exit(call(['python', scriptFile] + args['<args>']))    
  File "/opt/anaconda/lib/python2.7/subprocess.py", line 522, in call
Process PoolWorker-12:
Process PoolWorker-9:
Traceback (most recent call last):
Traceback (most recent call last):
    return Popen(*popenargs, **kwargs).wait()
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
  File "/opt/anaconda/lib/python2.7/subprocess.py", line 1384, in wait
    pid, sts = _eintr_retry_call(os.waitpid, self.pid, 0)
  File "/opt/anaconda/lib/python2.7/subprocess.py", line 476, in _eintr_retry_call
    return func(*args)
KeyboardInterrupt
    func(*targs, **kargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/util.py", line 305, in _exit_function
    _run_finalizers(0)
  File "/opt/anaconda/lib/python2.7/multiprocessing/util.py", line 274, in _run_finalizers
    finalizer()
  File "/opt/anaconda/lib/python2.7/multiprocessing/util.py", line 207, in __call__
    res = self._callback(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 491, in _terminate_pool
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self.run()
    self.run()
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self.run()
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self._target(*self._args, **self._kwargs)
    self._target(*self._args, **self._kwargs)
    self._target(*self._args, **self._kwargs)
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self.run()
    self._target(*self._args, **self._kwargs)
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self.run()
    self.run()
    self._target(*self._args, **self._kwargs)
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self.run()
    self.run()
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self._target(*self._args, **self._kwargs)
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self.run()
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self._target(*self._args, **self._kwargs)
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 102, in worker
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self.run()
    self._target(*self._args, **self._kwargs)
    self.run()
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
  File "/opt/anaconda/lib/python2.7/multiprocessing/process.py", line 114, in run
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
    self._target(*self._args, **self._kwargs)
    self._target(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 117, in worker
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 102, in worker
    outqueue.put(None)                  # sentinel
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
    put((job, i, result))
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put

  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
    put((job, i, result))
    wacquire()
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
KeyboardInterrupt
    task = get()
    wacquire()
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 374, in get
    put((job, i, result))
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
    racquire()
    put((job, i, result))
    put((job, i, result))
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
    put((job, i, result))
    put((job, i, result))
    wacquire()
    task = get()
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    put((job, i, result))
KeyboardInterrupt
    wacquire()
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 374, in get
KeyboardInterrupt
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    wacquire()
    wacquire()
    wacquire()
KeyboardInterrupt
KeyboardInterrupt
    wacquire()
KeyboardInterrupt
    wacquire()
    wacquire()
KeyboardInterrupt
    wacquire()
    wacquire()
    wacquire()
KeyboardInterrupt
KeyboardInterrupt
KeyboardInterrupt
KeyboardInterrupt
KeyboardInterrupt
    racquire()
    wacquire()
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
KeyboardInterrupt
KeyboardInterrupt
KeyboardInterrupt
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    wacquire()
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
KeyboardInterrupt
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
KeyboardInterrupt
    wacquire()
    wacquire()
    wacquire()
KeyboardInterrupt
KeyboardInterrupt
    wacquire()
KeyboardInterrupt
KeyboardInterrupt
    wacquire()
Error in sys.exitfunc:
    wacquire()
KeyboardInterrupt
KeyboardInterrupt
    wacquire()
Traceback (most recent call last):
KeyboardInterrupt
  File "/opt/anaconda/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
    func(*targs, **kargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/util.py", line 305, in _exit_function
    _run_finalizers(0)
  File "/opt/anaconda/lib/python2.7/multiprocessing/util.py", line 274, in _run_finalizers
    finalizer()
  File "/opt/anaconda/lib/python2.7/multiprocessing/util.py", line 207, in __call__
    res = self._callback(*self._args, **self._kwargs)
  File "/opt/anaconda/lib/python2.7/multiprocessing/pool.py", line 491, in _terminate_pool
    outqueue.put(None)                  # sentinel
  File "/opt/anaconda/lib/python2.7/multiprocessing/queues.py", line 388, in put
    wacquire()
KeyboardInterrupt

In [ ]: