In [199]:
baseDir = '/home/nick/notebook/SIPSim/dev/priming_exp/'
workDir = os.path.join(baseDir, 'CD-HIT')
rnammerDir = '/home/nick/notebook/SIPSim/dev/bac_genome1210/rnammer/'
otuRepFile = '/var/seq_data/priming_exp/otusn.pick.fasta'
otuTaxFile = '/var/seq_data/priming_exp/otusn_tax/otusn_tax_assignments.txt'
genomeDir = '/home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/'
otuTableFile = '/var/seq_data/priming_exp/data/otu_table.txt'
In [226]:
import re
import glob
import itertools
import random
from pprint import pprint
In [201]:
%load_ext rpy2.ipython
The rpy2.ipython extension is already loaded. To reload it, use:
%reload_ext rpy2.ipython
In [202]:
%%R
library(ggplot2)
library(dplyr)
library(tidyr)
library(gridExtra)
In [203]:
if not os.path.isdir(workDir):
os.makedirs(workDir)
In [204]:
%%R -i otuTableFile
tbl = read.delim(otuTableFile, sep='\t')
# filter to just bulk soil samples
tbl = tbl %>%
select(matches('OTUId'), ends_with('.NA'))
tbl %>% ncol %>% print
tbl[1:4,1:4]
[1] 71
OTUId X00C.000.14.09.NA X13C.100.14.08.NA X12C.700.28.04.NA
1 OTU.4776 60 88 54
2 OTU.2864 1 0 0
3 OTU.8170 0 0 0
4 OTU.8762 0 0 0
In [205]:
%%R
tbl.h = tbl %>%
gather('sample', 'count', 2:ncol(tbl)) %>%
filter(count > 0) %>%
select(OTUId) %>%
distinct() %>%
arrange(OTUId)
tbl.h %>% head
OTUId
1 OTU.1
2 OTU.10
3 OTU.100
4 OTU.1000
5 OTU.10000
6 OTU.1001
In [206]:
%%R -i workDir
outFile = paste(c(workDir, 'bulk_OTUs.txt'), collapse='/')
write.table(tbl.h, outFile, row.names=F, quote=F, sep='\t', col.names=F)
In [207]:
# loading bulk OTU list
inFile = os.path.join(workDir, 'bulk_OTUs.txt')
bulk_OTUs = []
with open(inFile, 'rb') as iFH:
for line in iFH:
line = line.rstrip().split('\t')
if line[0] != 'OTUId':
bulk_OTUs.append(line[0])
bulk_OTUs = set(bulk_OTUs)
print 'Number of OTUs: {}'.format(len(bulk_OTUs))
Number of OTUs: 7952
In [208]:
# loading OTU reps
OTU_seq = {}
with open(otuRepFile, 'rb') as iFH:
taxon = None
for line in iFH:
line = line.rstrip()
if line.startswith('>'):
taxon = line.lstrip('>')
if taxon in bulk_OTUs:
OTU_seq[taxon] = ''
else:
taxon = None
else:
if taxon is not None:
OTU_seq[taxon] += line
print 'Number of OTU rep sequences: {}'.format(len(OTU_seq.keys()))
Number of OTU rep sequences: 7952
In [209]:
# writing out filtered OTUs
bulk_OTU_rep = os.path.join(workDir, 'otusn.pick.bulk.fasta')
with open(bulk_OTU_rep, 'wb') as oFH:
for taxon,seq in OTU_seq.items():
oFH.write('>{}\n{}\n'.format(taxon, seq))
print 'File written: {}'.format(bulk_OTU_rep)
File written: /home/nick/notebook/SIPSim/dev/priming_exp/CD-HIT/otusn.pick.bulk.fasta
In [210]:
# priming_exp otu rep sequences
!printf "Number of sequences: "
!cd $workDir; \
grep -c ">" $bulk_OTU_rep
# bac_genome sequences
!cd $workDir; \
ln -s -f $rnammerDir/bac_genome1210_16S.fna .
!printf "Number of sequences: "
!cd $workDir; \
grep -c ">" $rnammerDir/bac_genome1210_16S.fna
Number of sequences: 7952
Number of sequences: 4557
In [211]:
# concatenating sequences
!cd $workDir; \
cat $bulk_OTU_rep bac_genome1210_16S.fna > ssu_all.fna
!printf "Number of sequences: "
!cd $workDir; \
grep -c ">" ssu_all.fna
Number of sequences: 12509
In [212]:
!cd $workDir; \
cd-hit-est -i ssu_all.fna -o ssu_all_cdhit -c 0.97 -d 0
================================================================
Program: CD-HIT, V4.6, Feb 20 2014, 09:04:54
Command: cd-hit-est -i ssu_all.fna -o ssu_all_cdhit -c 0.97 -d
0
Started: Thu Aug 27 08:15:49 2015
================================================================
Output
----------------------------------------------------------------
total seq: 12509
longest and shortest : 3286 and 362
Total letters: 9942024
Sequences have been sorted
Approximated minimal memory consumption:
Sequence : 11M
Buffer : 1 X 12M = 12M
Table : 1 X 16M = 16M
Miscellaneous : 4M
Total : 45M
Table limit with the given memory limit:
Max number of representatives: 466570
Max number of word counting entries: 94263981
comparing sequences from 0 to 12509
.......... 10000 finished 6131 clusters
..
12509 finished 8485 clusters
Apprixmated maximum memory consumption: 78M
writing new database
writing clustering information
program completed !
Total CPU time 10.27
In [213]:
inFile = os.path.join(workDir, 'ssu_all_cdhit.clstr')
tbl = {}
with open(inFile, 'rb') as inFH:
clst_id = None
for line in inFH:
line = line.rstrip()
if line.startswith('>'):
clst_id = line.lstrip('>Cluster ')
tbl[clst_id] = []
else:
tbl[clst_id].append(re.split('\t|, ', line))
print "Number of clusters loaded: {}".format(len(tbl.keys()))
Number of clusters loaded: 8485
In [214]:
# clusters that have '>OTU' and '>rRNA' (OTU and genome)
def shared_clust(x):
otus = any([y[2].startswith('>OTU') for y in x])
genomes = any([y[2].startswith('>rRNA') for y in x])
return otus == True and genomes == True
tbl_f = {x:y for x,y in tbl.items() if shared_clust(y)}
print "Number of clusters with OTUs and genomes: {}".format(len(tbl_f.keys()))
Number of clusters with OTUs and genomes: 174
In [215]:
# loading tax file
tax = {}
with open(otuTaxFile, 'rb') as inFH:
for line in inFH:
line = line.rstrip()
if not line.startswith('OTU'):
continue
otu,cls,boot,_ = line.split('\t')
cls = [x.lstrip(' __') for x in cls.split(';')]
for i in range(8):
try:
len(cls[i])
except IndexError:
cls.append('Unclassified')
tax[otu] = cls
In [216]:
def printDict(d, n=10):
cnt = 0
for x,y in d.items():
pprint(x)
print(y)
cnt += 1
if cnt >= n:
break
In [217]:
printDict(tax, n=3)
'OTU.8469'
['Unassigned', 'Unclassified', 'Unclassified', 'Unclassified', 'Unclassified', 'Unclassified', 'Unclassified', 'Unclassified']
'OTU.11582'
['Unassigned', 'Unclassified', 'Unclassified', 'Unclassified', 'Unclassified', 'Unclassified', 'Unclassified', 'Unclassified']
'OTU.5687'
['Bacteria', 'Firmicutes', 'Clostridia', 'Clostridiales', 'Peptococcaceae', 'Thermincola', 'Unclassified', 'Unclassified']
In [218]:
# adding taxonomic classifications to OTUs in target clusters
for clstr,x in tbl_f.items():
for y in x:
ID = y[2].lstrip('>')
ID = re.sub('\.\.\..+','', ID)
#print 'ID: "{}"'.format(ID)
try:
y.append(tax[ID])
except KeyError:
y.append(None)
In [219]:
# gut check: manual check of OTU classifications & genome names
for clstr,x in tbl_f.items():
print 'Cluster: {}'.format(clstr)
for y in x:
ID = y[2].lstrip('>')
if ID.startswith('OTU'):
# classifications
try:
print ':'.join(y[3])[:100]
except IndexError:
print ':'.join(y[3])
elif ID.startswith('rRNA'):
# genome names
try:
print ID[:100]
except IndexError:
print ID
Cluster: 458
Bacteria:Actinobacteria:Streptosporangiales:Thermomonosporaceae:Actinomadura:Unclassified:Unclassifi
Bacteria:Actinobacteria:Streptosporangiales:Thermomonosporaceae:Actinomadura:Unclassified:Unclassifi
Bacteria:Actinobacteria:Streptosporangiales:Thermomonosporaceae:Actinomadura:Unclassified:Unclassifi
rRNA_CP001738_Thermomonospora_curvata_DSM_43183_898387-899905_DIR+... at +/99.93%
rRNA_CP001738_Thermomonospora_curvata_DSM_43183_3076824-3078342_DIR-... at +/100.00%
rRNA_CP001738_Thermomonospora_curvata_DSM_43183_2529816-2531335_DIR+... *
rRNA_CP001738_Thermomonospora_curvata_DSM_43183_1793559-1795077_DIR+... at +/100.00%
Cluster: 210
Bacteria:Proteobacteria:Gammaproteobacteria:Xanthomonadales:Xanthomonadaceae:Pseudoxanthomonas:Uncla
Bacteria:Proteobacteria:Gammaproteobacteria:Xanthomonadales:Xanthomonadaceae:Pseudoxanthomonas:Uncla
rRNA_CP003093_Pseudoxanthomonas_spadix_BD_a59_3414517-3416053_DIR-... *
Cluster: 664
Bacteria:Actinobacteria:Micromonosporales:Micromonosporaceae:Micromonospora:Unclassified:Unclassifie
Bacteria:Actinobacteria:Micromonosporales:Micromonosporaceae:Micromonospora:Unclassified:Unclassifie
Bacteria:Actinobacteria:Micromonosporales:Micromonosporaceae:Unclassified:Unclassified:Unclassified:
Bacteria:Actinobacteria:Micromonosporales:Micromonosporaceae:Unclassified:Unclassified:Unclassified:
Bacteria:Actinobacteria:Micromonosporales:Micromonosporaceae:Planosporangium:uncultured_bacterium:Un
rRNA_CP002162_Micromonospora_aurantiaca_ATCC_27029_2546563-2548065_DIR+... at +/97.67%
rRNA_CP002162_Micromonospora_aurantiaca_ATCC_27029_5533833-5535335_DIR-... at +/97.67%
rRNA_CP002162_Micromonospora_aurantiaca_ATCC_27029_6680542-6682043_DIR-... at +/97.67%
rRNA_CP000850_Salinispora_arenicola_CNS_205_222631-224134_DIR+... *
rRNA_CP000850_Salinispora_arenicola_CNS_205_4414872-4416375_DIR-... at +/100.00%
rRNA_CP000850_Salinispora_arenicola_CNS_205_2184758-2186261_DIR+... at +/100.00%
rRNA_CP000667_Salinispora_tropica_CNB_440_202585-204088_DIR+... at +/99.53%
rRNA_CP000667_Salinispora_tropica_CNB_440_4012956-4014459_DIR-... at +/99.53%
rRNA_CP000667_Salinispora_tropica_CNB_440_2172807-2174310_DIR+... at +/99.53%
Cluster: 218
Bacteria:Actinobacteria:Thermoleophilia:Solirubrobacterales:Unclassified:Unclassified:Unclassified:U
rRNA_CP001854_Conexibacter_woesei_DSM_14684_3764582-3766117_DIR-... *
Cluster: 132
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfuromonadales:Desulfuromonadaceae:Pelobacter:Unclas
rRNA_CP000482_Pelobacter_propionicus_DSM_2379_1352684-1354229_DIR+... *
rRNA_CP000482_Pelobacter_propionicus_DSM_2379_2886442-2887987_DIR-... at +/100.00%
rRNA_CP000482_Pelobacter_propionicus_DSM_2379_3334716-3336261_DIR-... at +/100.00%
rRNA_CP000482_Pelobacter_propionicus_DSM_2379_1803507-1805052_DIR+... at +/100.00%
Cluster: 131
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfuromonadales:Desulfuromonadaceae:Desulfuromonas:Un
rRNA_CP000142_Pelobacter_carbinolicus_DSM_2380_2756171-2757716_DIR-... *
rRNA_CP000142_Pelobacter_carbinolicus_DSM_2380_2750589-2752134_DIR-... at +/99.74%
Cluster: 135
Bacteria:Proteobacteria:Deltaproteobacteria:Myxococcales:Sorangiineae:Polyangiaceae:Chondromyces:Unc
Bacteria:Proteobacteria:Deltaproteobacteria:Myxococcales:Sorangiineae:Polyangiaceae:Sorangium:Polyan
rRNA_AM746676_Sorangium_cellulosum__So_ce_56_3027066-3028610_DIR+... at +/100.00%
rRNA_AM746676_Sorangium_cellulosum__So_ce_56_5523319-5524864_DIR-... *
rRNA_AM746676_Sorangium_cellulosum__So_ce_56_10340262-10341806_DIR-... at +/100.00%
rRNA_AM746676_Sorangium_cellulosum__So_ce_56_3486020-3487564_DIR+... at +/100.00%
Cluster: 226
Bacteria:Proteobacteria:Gammaproteobacteria:Pseudomonadales:Moraxellaceae:Acinetobacter:Unclassified
rRNA_CP003846_Acinetobacter_baumannii_BJAB07104_3823-5347_DIR-... at +/97.64%
rRNA_CP003846_Acinetobacter_baumannii_BJAB07104_56186-57710_DIR+... at +/97.64%
rRNA_CP003846_Acinetobacter_baumannii_BJAB07104_3486230-3487754_DIR-... at +/97.64%
rRNA_CP003846_Acinetobacter_baumannii_BJAB07104_729835-731359_DIR+... at +/97.64%
rRNA_CP003846_Acinetobacter_baumannii_BJAB07104_227256-228780_DIR+... at +/97.64%
rRNA_CP003846_Acinetobacter_baumannii_BJAB07104_3453868-3455392_DIR-... at +/97.64%
rRNA_CP002177_Acinetobacter_calcoaceticus_PHEA_2_3321374-3322899_DIR+... at +/99.67%
rRNA_CP002177_Acinetobacter_calcoaceticus_PHEA_2_2678134-2679660_DIR-... at +/99.80%
rRNA_CP002080_Acinetobacter_oleivorans_DR1_3479770-3481295_DIR-... at +/100.00%
rRNA_CP002080_Acinetobacter_oleivorans_DR1_18773-20298_DIR+... at +/100.00%
rRNA_CP002080_Acinetobacter_oleivorans_DR1_4120139-4121673_DIR-... *
rRNA_CP002080_Acinetobacter_oleivorans_DR1_541439-542964_DIR+... at +/100.00%
rRNA_CP002080_Acinetobacter_oleivorans_DR1_505907-507432_DIR+... at +/99.93%
rRNA_CP002080_Acinetobacter_oleivorans_DR1_3939237-3940762_DIR-... at +/100.00%
Cluster: 494
Bacteria:Actinobacteria:Micrococcales:Bogoriellaceae:Georgenia:Unclassified:Unclassified:Unclassifie
rRNA_CP001618_Beutenbergia_cavernae_DSM_12333_1605359-1606875_DIR+... *
rRNA_CP001618_Beutenbergia_cavernae_DSM_12333_2648720-2650236_DIR-... at +/100.00%
Cluster: 692
Bacteria:Bacteroidetes:Flavobacteria:Flavobacteriales:Flavobacteriaceae:Flavobacterium:uncultured_ba
Bacteria:Bacteroidetes:Flavobacteria:Flavobacteriales:Flavobacteriaceae:Flavobacterium:uncultured_ba
rRNA_FQ859183_Flavobacterium_branchiophilum_FL_15_1179124-1180623_DIR+... *
rRNA_FQ859183_Flavobacterium_branchiophilum_FL_15_2694248-2695747_DIR-... at +/100.00%
rRNA_FQ859183_Flavobacterium_branchiophilum_FL_15_2932498-2933996_DIR-... at +/100.00%
Cluster: 542
Bacteria:Actinobacteria:Streptosporangiales:Streptosporangiaceae:Streptosporangium:Unclassified:Uncl
rRNA_CP001814_Streptosporangium_roseum_DSM_43021_6654434-6655946_DIR-... *
rRNA_CP001814_Streptosporangium_roseum_DSM_43021_2067480-2068992_DIR+... at +/100.00%
rRNA_CP001814_Streptosporangium_roseum_DSM_43021_9203836-9205348_DIR-... at +/100.00%
rRNA_CP001814_Streptosporangium_roseum_DSM_43021_9889847-9891359_DIR-... at +/100.00%
rRNA_CP001814_Streptosporangium_roseum_DSM_43021_4414101-4415613_DIR+... at +/100.00%
rRNA_CP001814_Streptosporangium_roseum_DSM_43021_8042254-8043766_DIR-... at +/100.00%
Cluster: 819
Bacteria:Proteobacteria:Alphaproteobacteria:Sphingomonadales:Sphingomonadaceae:Sphingomonas:Unclassi
Bacteria:Proteobacteria:Alphaproteobacteria:Sphingomonadales:Sphingomonadaceae:Sphingomonas:Unclassi
rRNA_CP000699_Sphingomonas_wittichii_RW1_3844823-3846297_DIR+... *
rRNA_CP000699_Sphingomonas_wittichii_RW1_2812340-2813814_DIR-... at +/100.00%
Cluster: 403
Bacteria:Proteobacteria:Gammaproteobacteria:Pseudomonadales:Pseudomonadaceae:Pseudomonas:Unclassifie
rRNA_CP010415_Azotobacter_chroococcum_NCIMB_8003_2524922-2526445_DIR-... *
rRNA_CP010415_Azotobacter_chroococcum_NCIMB_8003_185358-186881_DIR+... at +/99.93%
rRNA_CP010415_Azotobacter_chroococcum_NCIMB_8003_1658523-1660046_DIR+... at +/99.93%
rRNA_CP010415_Azotobacter_chroococcum_NCIMB_8003_914527-916050_DIR+... at +/100.00%
rRNA_CP010415_Azotobacter_chroococcum_NCIMB_8003_609300-610823_DIR+... at +/100.00%
rRNA_CP010415_Azotobacter_chroococcum_NCIMB_8003_3228034-3229557_DIR-... at +/100.00%
Cluster: 400
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:Comamonas:Unclassified:Unc
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:uncultured:uncultured_bact
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:Polaromonas:uncultured_bac
rRNA_CP000267_Rhodoferax_ferrireducens_T118_4118290-4119814_DIR-... *
rRNA_CP000267_Rhodoferax_ferrireducens_T118_4112646-4114170_DIR-... at +/100.00%
Cluster: 813
Bacteria:Proteobacteria:Alphaproteobacteria:Sphingomonadales:Sphingomonadaceae:Sphingobium:Unclassif
rRNA_CP002798_Sphingobium_chlorophenolicum_L_1_chromosome_1__complete_sequence_2454169-2455644_DIR+.
rRNA_CP002799_Sphingobium_chlorophenolicum_L_1_chromosome_2__complete_sequence_1220613-1222088_DIR-.
rRNA_CP002799_Sphingobium_chlorophenolicum_L_1_chromosome_2__complete_sequence_586311-587786_DIR+...
rRNA_AP010804_Sphingobium_japonicum_UT26S_DNA__chromosome_2_119257-120731_DIR+... at +/97.69%
rRNA_AP010803_Sphingobium_japonicum_UT26S_DNA__chromosome_1_68200-69674_DIR+... at +/97.69%
rRNA_AP010804_Sphingobium_japonicum_UT26S_DNA__chromosome_2_308559-310033_DIR+... at +/97.90%
Cluster: 348
Bacteria:Proteobacteria:Betaproteobacteria:Nitrosomonadales:Gallionellaceae:Sideroxydans:Unclassifie
rRNA_CP001965_Sideroxydans_lithotrophicus_ES_1_357388-358915_DIR+... *
rRNA_CP001965_Sideroxydans_lithotrophicus_ES_1_1926830-1928357_DIR-... at +/100.00%
Cluster: 815
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Beijerinckiaceae:uncultured:Unclassified:Unc
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Unclassified:Unclassified:Unclassified:Uncla
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:alphaI_cluster:Unclassified:Unclassified:Unc
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Beijerinckiaceae:Unclassified:Unclassified:U
rRNA_CP001016_Beijerinckia_indica_subsp__indica_ATCC_9039_680554-682028_DIR+... *
rRNA_CP001016_Beijerinckia_indica_subsp__indica_ATCC_9039_3418482-3419956_DIR-... at +/99.93%
rRNA_CP001016_Beijerinckia_indica_subsp__indica_ATCC_9039_3932131-3933605_DIR-... at +/100.00%
rRNA_CP001280_Methylocella_silvestris_BL2_2446870-2448344_DIR-... at +/97.22%
rRNA_CP001280_Methylocella_silvestris_BL2_1934569-1936043_DIR-... at +/97.22%
Cluster: 817
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Methylobacteriaceae:Methylobacterium:uncultu
rRNA_CP003811_Methylobacterium_oryzae_CBMB20_1919737-1921207_DIR+... at +/100.00%
rRNA_CP003811_Methylobacterium_oryzae_CBMB20_2866611-2868082_DIR-... at +/99.93%
rRNA_CP003811_Methylobacterium_oryzae_CBMB20_4009478-4010952_DIR-... *
rRNA_CP003811_Methylobacterium_oryzae_CBMB20_5089417-5090889_DIR+... at +/99.86%
rRNA_CP001001_Methylobacterium_radiotolerans_JCM_2831_1589195-1590665_DIR+... at +/99.39%
rRNA_CP001001_Methylobacterium_radiotolerans_JCM_2831_2541184-2542654_DIR-... at +/99.39%
rRNA_CP001001_Methylobacterium_radiotolerans_JCM_2831_3701113-3702583_DIR-... at +/99.39%
rRNA_CP001001_Methylobacterium_radiotolerans_JCM_2831_4684074-4685544_DIR+... at +/99.39%
Cluster: 87
Bacteria:Firmicutes:Bacilli:Lactobacillales:Carnobacteriaceae:Granulicatella:Unclassified:Unclassifi
rRNA_CP004856_Enterococcus_casseliflavus_EC20_666634-668180_DIR+... at +/98.00%
rRNA_CP004856_Enterococcus_casseliflavus_EC20_2405817-2407363_DIR-... at +/98.00%
rRNA_CP004856_Enterococcus_casseliflavus_EC20_3151037-3152583_DIR-... at +/97.93%
rRNA_CP004856_Enterococcus_casseliflavus_EC20_3397547-3399093_DIR-... at +/98.00%
rRNA_CP004856_Enterococcus_casseliflavus_EC20_1892576-1894122_DIR-... at +/97.93%
rRNA_CP004063_Enterococcus_faecium_NRRL_B_2354_2080965-2082512_DIR-... at +/99.55%
rRNA_CP004063_Enterococcus_faecium_NRRL_B_2354_425867-427414_DIR+... at +/99.55%
rRNA_CP004063_Enterococcus_faecium_NRRL_B_2354_2450446-2451993_DIR-... at +/99.61%
rRNA_CP004063_Enterococcus_faecium_NRRL_B_2354_2615576-2617123_DIR-... at +/99.61%
rRNA_CP004063_Enterococcus_faecium_NRRL_B_2354_1317343-1318890_DIR+... at +/99.61%
rRNA_CP004063_Enterococcus_faecium_NRRL_B_2354_2358397-2359945_DIR-... at +/99.48%
rRNA_CP003504_Enterococcus_hirae_ATCC_9790_587646-589193_DIR-... at +/100.00%
rRNA_CP003504_Enterococcus_hirae_ATCC_9790_1121149-1122696_DIR+... at +/99.94%
rRNA_CP003504_Enterococcus_hirae_ATCC_9790_1295511-1297057_DIR+... at +/99.74%
rRNA_CP003504_Enterococcus_hirae_ATCC_9790_1515375-1516924_DIR+... at +/99.87%
rRNA_CP003504_Enterococcus_hirae_ATCC_9790_944589-946142_DIR+... *
rRNA_CP003504_Enterococcus_hirae_ATCC_9790_2735519-2737066_DIR-... at +/99.94%
rRNA_AP013036_Enterococcus_mundtii_QU_25_DNA_2713422-2714970_DIR-... at +/99.23%
rRNA_AP013036_Enterococcus_mundtii_QU_25_DNA_464289-465837_DIR+... at +/99.16%
rRNA_AP013036_Enterococcus_mundtii_QU_25_DNA_2990893-2992441_DIR-... at +/99.16%
rRNA_AP013036_Enterococcus_mundtii_QU_25_DNA_1050327-1051875_DIR+... at +/99.23%
rRNA_AP013036_Enterococcus_mundtii_QU_25_DNA_724173-725721_DIR+... at +/99.23%
rRNA_AP013036_Enterococcus_mundtii_QU_25_DNA_2796670-2798218_DIR-... at +/99.23%
Cluster: 761
Bacteria:Bacteroidetes:Cytophagia:Cytophagales:Cytophagaceae:Emticicia:Unclassified:Unclassified
rRNA_CP002961_Emticicia_oligotrophica_DSM_17448_2129439-2130927_DIR+... *
rRNA_CP002961_Emticicia_oligotrophica_DSM_17448_1412328-1413816_DIR-... at +/99.93%
Cluster: 679
Bacteria:Planctomycetes:Planctomycetacia:Planctomycetales:Planctomycetaceae:Singulisphaera:unculture
rRNA_CP003364_Singulisphaera_acidiphila_DSM_18658_7835090-7836591_DIR-... *
rRNA_CP003364_Singulisphaera_acidiphila_DSM_18658_4641583-4643084_DIR+... at +/100.00%
rRNA_CP003364_Singulisphaera_acidiphila_DSM_18658_7450454-7451955_DIR-... at +/100.00%
rRNA_CP003364_Singulisphaera_acidiphila_DSM_18658_4141975-4143476_DIR+... at +/100.00%
rRNA_CP003364_Singulisphaera_acidiphila_DSM_18658_7355417-7356918_DIR-... at +/99.93%
rRNA_CP003364_Singulisphaera_acidiphila_DSM_18658_4719468-4720969_DIR+... at +/100.00%
rRNA_CP003364_Singulisphaera_acidiphila_DSM_18658_3325973-3327474_DIR+... at +/99.80%
rRNA_CP003364_Singulisphaera_acidiphila_DSM_18658_5823227-5824728_DIR+... at +/99.80%
Cluster: 719
Bacteria:Firmicutes:Clostridia:Clostridiales:Clostridiaceae:Clostridium:Unclassified:Unclassified
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_103266-104760_DIR+... *
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_59529-61023_DIR+... at +/99.93%
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_112457-113951_DIR+... at +/100.00%
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_3974970-3976464_DIR-... at +/100.00%
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_50224-51718_DIR+... at +/100.00%
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_1554411-1555905_DIR+... at +/99.93%
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_69045-70539_DIR+... at +/100.00%
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_9698-11192_DIR+... at +/100.00%
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_3710749-3712243_DIR-... at +/99.87%
rRNA_CP009267_Clostridium_pasteurianum_DSM_525___ATCC_6013_82923-84417_DIR+... at +/99.87%
Cluster: 577
Bacteria:Bacteroidetes:Cytophagia:Cytophagales:Flammeovirgaceae:Candidatus_Amoebophilus:uncultured_b
Bacteria:Bacteroidetes:Cytophagia:Cytophagales:Flammeovirgaceae:Candidatus_Amoebophilus:Unclassified
rRNA_CP001102_Candidatus_Amoebophilus_asiaticus_5a2_596541-598050_DIR+... *
Cluster: 714
Bacteria:Chloroflexi:Thermomicrobia:Sphaerobacteridae:Sphaerobacterales:Sphaerobacterineae:Sphaeroba
rRNA_CP001823_Sphaerobacter_thermophilus_DSM_20745_chromosome_1__complete_sequence_579562-581058_DIR
rRNA_CP001824_Sphaerobacter_thermophilus_DSM_20745_chromosome_2__complete_sequence_554481-555976_DIR
Cluster: 260
Bacteria:Proteobacteria:Gammaproteobacteria:Xanthomonadales:Xanthomonadaceae:Pseudoxanthomonas:Uncla
rRNA_CP002446_Pseudoxanthomonas_suwonensis_11_1_1425078-1426609_DIR+... at +/99.93%
rRNA_CP002446_Pseudoxanthomonas_suwonensis_11_1_3230694-3232226_DIR-... *
Cluster: 764
Bacteria:Acidobacteria:Acidobacteriales:Acidobacteriaceae:Acidobacterium:uncultured_bacterium:Unclas
rRNA_CP001472_Acidobacterium_capsulatum_ATCC_51196_2863335-2864822_DIR+... *
Cluster: 24
Bacteria:Firmicutes:Clostridia:Clostridiales:Peptococcaceae:Desulfitobacterium:uncultured_bacterium:
rRNA_CP003344_Desulfitobacterium_dichloroeliminans_LMG_P_21439_2245532-2247252_DIR-... *
rRNA_CP003344_Desulfitobacterium_dichloroeliminans_LMG_P_21439_1812554-1814274_DIR+... at +/99.83%
Cluster: 128
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfobacterales:Desulfobulbaceae:Desulfobulbus:uncultu
rRNA_CP002364_Desulfobulbus_propionicus_DSM_2032_2987039-2988584_DIR+... *
rRNA_CP002364_Desulfobulbus_propionicus_DSM_2032_2674670-2676215_DIR-... at +/100.00%
Cluster: 129
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfuromonadales:BVA18:Unclassified:Unclassified:Uncla
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfuromonadales:Geobacteraceae:Geobacter:Unclassified
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfuromonadales:Geobacteraceae:Geobacter:Unclassified
rRNA_CP001089_Geobacter_lovleyi_SZ_768668-770213_DIR+... *
rRNA_CP001089_Geobacter_lovleyi_SZ_1712343-1713888_DIR+... at +/100.00%
Cluster: 118
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Anoxybacillus:Unclassified:Unclassified
Bacteria:Firmicutes:Bacilli:Bacillales:Family_XII_Incertae_Sedis:Incertae_Sedis:uncultured_bacterium
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_661618-663164_DIR+... at +/100.00%
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_89647-91193_DIR+... at +/100.00%
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_1443779-1445325_DIR+... at +/99.87%
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_3585975-3587521_DIR-... at +/99.94%
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_30979-32526_DIR+... *
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_3628836-3630382_DIR-... at +/99.94%
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_95676-97223_DIR+... at +/99.87%
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_3254840-3256386_DIR-... at +/99.94%
Cluster: 52
Bacteria:Firmicutes:Clostridia:Thermoanaerobacterales:Family_III_Incertae_Sedis:Thermoanaerobacteriu
rRNA_CP002739_Thermoanaerobacterium_xylanolyticum_LX_11_60209-61784_DIR+... *
rRNA_CP002739_Thermoanaerobacterium_xylanolyticum_LX_11_442255-443830_DIR+... at +/100.00%
rRNA_CP002739_Thermoanaerobacterium_xylanolyticum_LX_11_372662-374237_DIR+... at +/100.00%
rRNA_CP002739_Thermoanaerobacterium_xylanolyticum_LX_11_79434-81009_DIR+... at +/100.00%
rRNA_CP002739_Thermoanaerobacterium_xylanolyticum_LX_11_1458227-1459802_DIR-... at +/100.00%
Cluster: 379
Bacteria:Proteobacteria:Betaproteobacteria:Methylophilales:Methylophilaceae:Methylotenera:uncultured
rRNA_CP001672_Methylotenera_mobilis_JLW8_214628-216153_DIR+... *
rRNA_CP001672_Methylotenera_mobilis_JLW8_691251-692776_DIR+... at +/100.00%
Cluster: 532
Bacteria:Firmicutes:Clostridia:Clostridiales:Family_XI_Incertae_Sedis:Incertae_Sedis:Unclassified:Un
rRNA_CP003326_Clostridium_acidurici_9a_2471933-2473445_DIR-... at +/99.60%
rRNA_CP003326_Clostridium_acidurici_9a_11124-12636_DIR+... at +/99.60%
rRNA_CP003326_Clostridium_acidurici_9a_3033100-3034612_DIR-... at +/99.60%
rRNA_CP003326_Clostridium_acidurici_9a_1003099-1004611_DIR+... at +/99.80%
rRNA_CP003326_Clostridium_acidurici_9a_992011-993524_DIR+... *
rRNA_CP003326_Clostridium_acidurici_9a_3020882-3022394_DIR-... at +/99.47%
Cluster: 412
Bacteria:Proteobacteria:Betaproteobacteria:Nitrosomonadales:Nitrosomonadaceae:Nitrosospira:Unclassif
rRNA_CP000103_Nitrosospira_multiformis_ATCC_25196_562629-564152_DIR+... *
Cluster: 530
Bacteria:Actinobacteria:Streptomycetales:Streptomycetaceae:Streptomyces:Unclassified:Unclassified:Un
rRNA_CP006259_Streptomyces_collinus_Tu_365_1705885-1707398_DIR-... *
rRNA_CP006259_Streptomyces_collinus_Tu_365_4844926-4846439_DIR+... at +/100.00%
rRNA_CP006259_Streptomyces_collinus_Tu_365_3633711-3635224_DIR-... at +/100.00%
rRNA_CP006259_Streptomyces_collinus_Tu_365_4176908-4178421_DIR-... at +/100.00%
rRNA_CP006259_Streptomyces_collinus_Tu_365_6197651-6199164_DIR+... at +/100.00%
rRNA_CP006259_Streptomyces_collinus_Tu_365_2182272-2183785_DIR-... at +/100.00%
Cluster: 825
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Rhodobiaceae:Parvibaculum:uncultured_Parviba
rRNA_CP000774_Parvibaculum_lavamentivorans_DS_1_1901257-1902730_DIR+... *
Cluster: 824
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Phyllobacteriaceae:Mesorhizobium:Unclassifie
rRNA_CP003358_Mesorhizobium_australicum_WSM2073_1738466-1739938_DIR+... at +/99.59%
rRNA_CP003358_Mesorhizobium_australicum_WSM2073_1746046-1747518_DIR+... at +/99.59%
rRNA_CP002447_Mesorhizobium_ciceri_biovar_biserrulae_WSM1271_1686680-1688152_DIR+... at +/100.00%
rRNA_CP002447_Mesorhizobium_ciceri_biovar_biserrulae_WSM1271_1694553-1696026_DIR+... *
rRNA_BA000012_Mesorhizobium_loti_MAFF303099_DNA_2757519-2758991_DIR-... at +/98.30%
rRNA_BA000012_Mesorhizobium_loti_MAFF303099_DNA_2750006-2751478_DIR-... at +/98.30%
rRNA_CP002279_Mesorhizobium_opportunistum_WSM2075_1728175-1729647_DIR+... at +/98.23%
rRNA_CP002279_Mesorhizobium_opportunistum_WSM2075_1735934-1737406_DIR+... at +/98.23%
Cluster: 294
Bacteria:Actinobacteria:Streptosporangiales:Unclassified:Unclassified:Unclassified:Unclassified:Uncl
rRNA_CP001874_Thermobispora_bispora_DSM_43833_2893296-2894826_DIR-... *
rRNA_CP001874_Thermobispora_bispora_DSM_43833_3886709-3888239_DIR-... at +/100.00%
Cluster: 372
Bacteria:Proteobacteria:Betaproteobacteria:Rhodocyclales:Rhodocyclaceae:Azoarcus:Unclassified:Unclas
rRNA_CR555306_Azoarcus_aromaticum_EbN1_1845876-1847401_DIR+... *
rRNA_CR555306_Azoarcus_aromaticum_EbN1_548904-550429_DIR-... at +/100.00%
rRNA_CR555306_Azoarcus_aromaticum_EbN1_2620997-2622522_DIR+... at +/100.00%
rRNA_CR555306_Azoarcus_aromaticum_EbN1_2411726-2413251_DIR+... at +/100.00%
Cluster: 821
Bacteria:Proteobacteria:Alphaproteobacteria:Rhodospirillales:Rhodospirillaceae:Azospirillum:Unclassi
rRNA_FQ311868_Azospirillum_lipoferum_4B_main_chromosome_315020-316493_DIR+... *
rRNA_FQ311868_Azospirillum_lipoferum_4B_main_chromosome_2945293-2946764_DIR+... at +/98.98%
Cluster: 823
Bacteria:Proteobacteria:Alphaproteobacteria:Sphingomonadales:Erythrobacteraceae:uncultured:Unclassif
rRNA_CP000157_Erythrobacter_litoralis_HTCC2594_63538-65011_DIR+... *
Cluster: 538
Bacteria:Bacteroidetes:Flavobacteria:Flavobacteriales:Cryomorphaceae:Fluviicola:uncultured_bacterium
rRNA_CP002542_Fluviicola_taffensis_DSM_16823_2752771-2754283_DIR+... *
rRNA_CP002542_Fluviicola_taffensis_DSM_16823_2876358-2877870_DIR+... at +/100.00%
Cluster: 198
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Unclassified:Unclassified:Unclassified
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_267871-269408_DIR+... *
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_94993-96530_DIR+... at +/99.93%
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_1034057-1035594_DIR+... at +/99.74%
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_2896775-2898312_DIR-... at +/99.74%
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_33438-34975_DIR+... at +/99.80%
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_3784353-3785890_DIR-... at +/100.00%
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_100831-102368_DIR+... at +/99.87%
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_11387-12924_DIR+... at +/100.00%
rRNA_CP006643_Bacillus_infantis_NRRL_B_14911_166737-168274_DIR+... at +/99.93%
Cluster: 596
Bacteria:Bacteroidetes:Cytophagia:Cytophagales:Cytophagaceae:Cytophaga:uncultured_bacterium:Unclassi
rRNA_CP000383_Cytophaga_hutchinsonii_ATCC_33406_120035-121543_DIR+... *
rRNA_CP000383_Cytophaga_hutchinsonii_ATCC_33406_1997071-1998579_DIR-... at +/100.00%
rRNA_CP000383_Cytophaga_hutchinsonii_ATCC_33406_183152-184660_DIR+... at +/100.00%
Cluster: 134
Bacteria:Firmicutes:Bacilli:Bacillales:Planococcaceae:Solibacillus:uncultured_bacterium:Unclassified
Bacteria:Firmicutes:Bacilli:Bacillales:Planococcaceae:Solibacillus:uncultured_bacterium:Unclassified
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_3869767-3871309_DIR-... at +/99.81%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_9633-11176_DIR-... at +/99.68%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_518568-520109_DIR+... at +/99.16%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_3654141-3655682_DIR-... at +/99.87%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_76641-78183_DIR-... at +/99.74%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_465984-467522_DIR+... at +/99.87%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_3637-5177_DIR-... at +/99.55%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_124055-125600_DIR-... *
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_730799-732344_DIR+... at +/99.74%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_290186-291730_DIR+... at +/99.87%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_68874-70419_DIR-... at +/100.00%
rRNA_AP012157_Solibacillus_silvestris_StLB046_DNA_1186075-1187614_DIR+... at +/99.68%
Cluster: 191
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Bacillus:Unclassified:Unclassified
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Bacillus:Unclassified:Unclassified
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Bacillus:Unclassified:Unclassified
rRNA_CP006890_Bacillus_amyloliquefaciens_SQR9_904909-906446_DIR+... at +/98.24%
rRNA_CP006890_Bacillus_amyloliquefaciens_SQR9_9769-11306_DIR+... at +/98.24%
rRNA_CP006890_Bacillus_amyloliquefaciens_SQR9_156122-157659_DIR+... at +/98.18%
rRNA_CP006890_Bacillus_amyloliquefaciens_SQR9_91536-93073_DIR+... at +/98.24%
rRNA_CP006890_Bacillus_amyloliquefaciens_SQR9_3132158-3133695_DIR-... at +/98.24%
rRNA_CP006890_Bacillus_amyloliquefaciens_SQR9_31505-33042_DIR+... at +/98.24%
rRNA_CP006890_Bacillus_amyloliquefaciens_SQR9_556940-558477_DIR+... at +/98.24%
rRNA_CP002207_Bacillus_atrophaeus_1942_3784168-3785705_DIR+... at +/98.37%
rRNA_CP002207_Bacillus_atrophaeus_1942_95765-97302_DIR+... at +/98.37%
rRNA_CP002207_Bacillus_atrophaeus_1942_3658835-3660372_DIR+... at +/98.31%
rRNA_CP002207_Bacillus_atrophaeus_1942_3638263-3639800_DIR+... at +/98.31%
rRNA_CP002207_Bacillus_atrophaeus_1942_2606102-2607639_DIR-... at +/98.24%
rRNA_CP002207_Bacillus_atrophaeus_1942_405546-407083_DIR+... at +/98.31%
rRNA_CP002207_Bacillus_atrophaeus_1942_3719207-3720744_DIR+... at +/98.31%
rRNA_AE017333_Bacillus_licheniformis_DSM_13___ATCC_14580_920785-922323_DIR+... *
rRNA_AE017333_Bacillus_licheniformis_DSM_13___ATCC_14580_9713-11250_DIR+... at +/99.80%
rRNA_AE017333_Bacillus_licheniformis_DSM_13___ATCC_14580_158109-159647_DIR+... at +/100.00%
rRNA_AE017333_Bacillus_licheniformis_DSM_13___ATCC_14580_95153-96691_DIR+... at +/99.81%
rRNA_AE017333_Bacillus_licheniformis_DSM_13___ATCC_14580_3121614-3123152_DIR-... at +/99.94%
rRNA_AE017333_Bacillus_licheniformis_DSM_13___ATCC_14580_34411-35948_DIR+... at +/99.80%
rRNA_AE017333_Bacillus_licheniformis_DSM_13___ATCC_14580_611805-613342_DIR+... at +/99.74%
rRNA_CP006881_Bacillus_subtilis_PY79_166507-168044_DIR+... at +/98.31%
rRNA_CP006881_Bacillus_subtilis_PY79_90544-92079_DIR+... at +/98.11%
rRNA_CP006881_Bacillus_subtilis_PY79_171509-173046_DIR+... at +/98.31%
rRNA_CP006881_Bacillus_subtilis_PY79_909739-911276_DIR+... at +/98.31%
rRNA_CP006881_Bacillus_subtilis_PY79_30287-31824_DIR+... at +/98.37%
rRNA_CP006881_Bacillus_subtilis_PY79_598476-600013_DIR+... at +/98.11%
rRNA_CP006881_Bacillus_subtilis_PY79_96398-97934_DIR+... at +/98.31%
rRNA_CP006881_Bacillus_subtilis_PY79_9819-11356_DIR+... at +/98.31%
rRNA_CP006881_Bacillus_subtilis_PY79_2994949-2996485_DIR-... at +/98.11%
rRNA_CP006881_Bacillus_subtilis_PY79_160898-162435_DIR+... at +/98.24%
Cluster: 701
Bacteria:Firmicutes:Clostridia:Clostridiales:Clostridiaceae:Clostridium:uncultured_bacterium:Unclass
rRNA_AP009049_Clostridium_kluyveri_NBRC_12016_DNA_3797486-3798984_DIR-... *
rRNA_AP009049_Clostridium_kluyveri_NBRC_12016_DNA_9356-10854_DIR+... at +/99.93%
rRNA_AP009049_Clostridium_kluyveri_NBRC_12016_DNA_955391-956889_DIR+... at +/99.87%
rRNA_AP009049_Clostridium_kluyveri_NBRC_12016_DNA_833913-835411_DIR+... at +/99.93%
rRNA_AP009049_Clostridium_kluyveri_NBRC_12016_DNA_3785921-3787419_DIR-... at +/100.00%
rRNA_AP009049_Clostridium_kluyveri_NBRC_12016_DNA_171987-173485_DIR+... at +/99.73%
rRNA_AP009049_Clostridium_kluyveri_NBRC_12016_DNA_969877-971375_DIR+... at +/99.87%
Cluster: 192
Bacteria:Firmicutes:Bacilli:Bacillales:Planococcaceae:Unclassified:Unclassified:Unclassified
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Bacillus:Unclassified:Unclassified
rRNA_CP007739_Bacillus_methanolicus_MGA3_249239-250777_DIR+... *
rRNA_CP007739_Bacillus_methanolicus_MGA3_92312-93850_DIR+... at +/99.74%
rRNA_CP007739_Bacillus_methanolicus_MGA3_292686-294224_DIR+... at +/99.94%
rRNA_CP007739_Bacillus_methanolicus_MGA3_2753934-2755472_DIR-... at +/99.87%
rRNA_CP007739_Bacillus_methanolicus_MGA3_31285-32823_DIR+... at +/99.94%
rRNA_CP007739_Bacillus_methanolicus_MGA3_693977-695515_DIR+... at +/99.87%
rRNA_CP007739_Bacillus_methanolicus_MGA3_98436-99974_DIR+... at +/99.87%
rRNA_CP007739_Bacillus_methanolicus_MGA3_10668-12206_DIR+... at +/99.87%
rRNA_CP007739_Bacillus_methanolicus_MGA3_162425-163963_DIR+... at +/99.81%
Cluster: 88
Bacteria:Firmicutes:Bacilli:Bacillales:Family_XII_Incertae_Sedis:Exiguobacterium:uncultured_Exiguoba
rRNA_CP003063_Exiguobacterium_antarcticum_B7_147157-148706_DIR+... at +/99.74%
rRNA_CP003063_Exiguobacterium_antarcticum_B7_35620-37169_DIR+... at +/99.74%
rRNA_CP003063_Exiguobacterium_antarcticum_B7_428722-430271_DIR+... at +/99.68%
rRNA_CP003063_Exiguobacterium_antarcticum_B7_29698-31247_DIR+... at +/99.74%
rRNA_CP003063_Exiguobacterium_antarcticum_B7_657451-659004_DIR+... *
rRNA_CP003063_Exiguobacterium_antarcticum_B7_82414-83963_DIR+... at +/99.94%
rRNA_CP003063_Exiguobacterium_antarcticum_B7_10733-12282_DIR+... at +/99.23%
rRNA_CP003063_Exiguobacterium_antarcticum_B7_88002-89551_DIR+... at +/99.87%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_147219-148768_DIR+... at +/99.55%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_35706-37255_DIR+... at +/99.48%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_468958-470507_DIR+... at +/99.48%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_2787607-2789156_DIR-... at +/99.61%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_29790-31339_DIR+... at +/99.61%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_699110-700659_DIR+... at +/99.68%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_82485-84034_DIR+... at +/99.61%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_10779-12328_DIR+... at +/99.42%
rRNA_CP001022_Exiguobacterium_sibiricum_255_15_88069-89618_DIR+... at +/99.61%
Cluster: 275
Bacteria:Proteobacteria:Gammaproteobacteria:Legionellales:Legionellaceae:Legionella:Unclassified:Unc
Bacteria:Proteobacteria:Gammaproteobacteria:Legionellales:Legionellaceae:Legionella:Unclassified:Unc
rRNA_FN650140_Legionella_longbeachae_NSW150_540034-541565_DIR+... *
rRNA_FN650140_Legionella_longbeachae_NSW150_3087417-3088948_DIR-... at +/99.93%
rRNA_FN650140_Legionella_longbeachae_NSW150_344743-346274_DIR+... at +/99.87%
rRNA_FN650140_Legionella_longbeachae_NSW150_1117726-1119257_DIR+... at +/100.00%
rRNA_AE017354_Legionella_pneumophila_subsp__pneumophila_str__Philadelphia_1_359868-361399_DIR+... at
rRNA_AE017354_Legionella_pneumophila_subsp__pneumophila_str__Philadelphia_1_3101165-3102696_DIR-...
rRNA_AE017354_Legionella_pneumophila_subsp__pneumophila_str__Philadelphia_1_608228-609759_DIR+... at
Cluster: 113
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Geobacillus:Bacillus:Unclassified
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_276547-278092_DIR+... at +/98.25%
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_89413-90958_DIR+... at +/98.12%
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_519818-521363_DIR+... at +/98.12%
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_2190794-2192338_DIR-... at +/98.12%
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_30791-32336_DIR+... at +/98.58%
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_2946097-2947642_DIR-... at +/98.06%
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_154303-155848_DIR+... at +/98.19%
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_10422-11966_DIR+... at +/98.25%
rRNA_BA000043_Geobacillus_kaustophilus_HTA426_DNA_249893-251438_DIR+... at +/98.32%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_258794-260340_DIR+... at +/99.81%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_87326-88870_DIR+... at +/99.81%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_547533-549081_DIR+... *
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_2213655-2215201_DIR-... at +/99.22%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_29329-30875_DIR+... at +/99.74%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_1312223-1313769_DIR+... at +/99.68%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_150332-151876_DIR+... at +/99.68%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_10618-12166_DIR+... at +/99.29%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_2971230-2972778_DIR-... at +/99.48%
rRNA_CP000557_Geobacillus_thermodenitrificans_NG80_2_225976-227520_DIR+... at +/99.81%
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_10676-12221_DIR+... at +/97.02%
rRNA_CP002835_Geobacillus_thermoglucosidasius_C56_YS93_157388-158933_DIR+... at +/97.09%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_314519-316064_DIR+... at +/98.25%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_90848-92393_DIR+... at +/98.19%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_568937-570482_DIR+... at +/97.93%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_2238525-2240070_DIR-... at +/98.25%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_29197-30742_DIR+... at +/98.19%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_3009851-3011396_DIR-... at +/98.12%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_155441-156989_DIR+... at +/97.93%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_10431-11976_DIR+... at +/97.99%
rRNA_CP003125_Geobacillus_thermoleovorans_CCB_US3_UF5_248483-250028_DIR+... at +/98.06%
Cluster: 399
Bacteria:Actinobacteria:Micrococcales:Micrococcaceae:Arthrobacter:Unclassified:Unclassified:Unclassi
rRNA_CP000910_Renibacterium_salmoninarum_ATCC_33209_364821-366345_DIR+... *
rRNA_CP000910_Renibacterium_salmoninarum_ATCC_33209_674883-676407_DIR+... at +/100.00%
Cluster: 398
Bacteria:Proteobacteria:Gammaproteobacteria:Pseudomonadales:Pseudomonadaceae:Pseudomonas:Unclassifie
Bacteria:Proteobacteria:Gammaproteobacteria:Pseudomonadales:Pseudomonadaceae:Pseudomonas:Unclassifie
Bacteria:Proteobacteria:Gammaproteobacteria:Pseudomonadales:Pseudomonadaceae:Pseudomonas:Unclassifie
rRNA_CT573326_Pseudomonas_entomophila_str__L48_chromosome_complete_sequence_490040-491564_DIR+... *
rRNA_CP002727_Pseudomonas_fulva_12_X_239522-241045_DIR+... at +/98.23%
rRNA_CP002727_Pseudomonas_fulva_12_X_2802266-2803789_DIR-... at +/98.23%
rRNA_CP002727_Pseudomonas_fulva_12_X_936928-938451_DIR+... at +/98.16%
rRNA_CP002727_Pseudomonas_fulva_12_X_691587-693110_DIR+... at +/98.16%
rRNA_CP002620_Pseudomonas_mendocina_NK_01_5207855-5209379_DIR-... at +/98.16%
rRNA_CP002620_Pseudomonas_mendocina_NK_01_3043024-3044548_DIR-... at +/98.30%
rRNA_CP002620_Pseudomonas_mendocina_NK_01_4252678-4254202_DIR-... at +/98.16%
rRNA_CP002620_Pseudomonas_mendocina_NK_01_4718333-4719857_DIR-... at +/98.16%
Cluster: 424
Bacteria:Proteobacteria:Betaproteobacteria:Hydrogenophilales:Hydrogenophilaceae:Thiobacillus:Unclass
rRNA_CP000116_Thiobacillus_denitrificans_ATCC_25259_478077-479599_DIR+... *
rRNA_CP000116_Thiobacillus_denitrificans_ATCC_25259_1863927-1865449_DIR-... at +/100.00%
Cluster: 832
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Methylobacteriaceae:Methylobacterium:Unclass
rRNA_CP001510_Methylobacterium_extorquens_AM1_1255243-1256715_DIR-... *
rRNA_CP001510_Methylobacterium_extorquens_AM1_605675-607147_DIR-... at +/100.00%
rRNA_CP001510_Methylobacterium_extorquens_AM1_817852-819324_DIR-... at +/100.00%
rRNA_CP001510_Methylobacterium_extorquens_AM1_1232884-1234356_DIR-... at +/100.00%
rRNA_CP001510_Methylobacterium_extorquens_AM1_432441-433913_DIR-... at +/100.00%
rRNA_CP001029_Methylobacterium_populi_BJ001_1453427-1454899_DIR-... at +/99.25%
rRNA_CP001029_Methylobacterium_populi_BJ001_763314-764786_DIR-... at +/99.25%
rRNA_CP001029_Methylobacterium_populi_BJ001_1015511-1016983_DIR-... at +/99.25%
rRNA_CP001029_Methylobacterium_populi_BJ001_1430574-1432046_DIR-... at +/99.32%
rRNA_CP001029_Methylobacterium_populi_BJ001_606450-607922_DIR-... at +/99.19%
Cluster: 793
Bacteria:Cyanobacteria:SubsectionIV:FamilyI:Anabaena:Unclassified:Unclassified:Unclassified
rRNA_CP002059__Nostoc_azollae__0708_830919-832396_DIR+... *
rRNA_CP002059__Nostoc_azollae__0708_979079-980555_DIR-... at +/100.00%
rRNA_CP002059__Nostoc_azollae__0708_2979417-2980893_DIR-... at +/100.00%
rRNA_CP002059__Nostoc_azollae__0708_2217271-2218747_DIR+... at +/100.00%
Cluster: 834
Bacteria:Proteobacteria:Alphaproteobacteria:Sphingomonadales:Sphingomonadaceae:Novosphingobium:Uncla
Bacteria:Proteobacteria:Alphaproteobacteria:Sphingomonadales:Sphingomonadaceae:Novosphingobium:Uncla
rRNA_CP000248_Novosphingobium_aromaticivorans_DSM_12444_2862501-2863973_DIR-... *
rRNA_CP000248_Novosphingobium_aromaticivorans_DSM_12444_2851035-2852507_DIR-... at +/100.00%
rRNA_CP000248_Novosphingobium_aromaticivorans_DSM_12444_2856768-2858240_DIR-... at +/100.00%
Cluster: 838
Bacteria:Proteobacteria:Alphaproteobacteria:Caulobacterales:Caulobacteraceae:Caulobacter:Unclassifie
Bacteria:Proteobacteria:Alphaproteobacteria:Caulobacterales:Caulobacteraceae:Caulobacter:Unclassifie
rRNA_CP001340_Caulobacter_crescentus_NA1000_3796172-3797643_DIR-... *
rRNA_CP001340_Caulobacter_crescentus_NA1000_2866139-2867610_DIR-... at +/100.00%
rRNA_CP002008_Caulobacter_segnis_ATCC_21756_180210-181681_DIR+... at +/99.73%
rRNA_CP002008_Caulobacter_segnis_ATCC_21756_1152537-1154008_DIR+... at +/99.73%
Cluster: 798
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Bradyrhizobiaceae:Bradyrhizobium:Unclassifie
rRNA_BA000040_Bradyrhizobium_japonicum_USDA_110_DNA_1528234-1529710_DIR+... *
rRNA_AP012206_Bradyrhizobium_japonicum_USDA_6_DNA_1584408-1585884_DIR+... at +/99.32%
rRNA_AP012206_Bradyrhizobium_japonicum_USDA_6_DNA_6255008-6256484_DIR-... at +/99.32%
rRNA_AP012603_Bradyrhizobium_oligotrophicum_S58_DNA_3187415-3188891_DIR+... at +/98.98%
rRNA_AP012603_Bradyrhizobium_oligotrophicum_S58_DNA_7419994-7421470_DIR-... at +/98.98%
rRNA_CP000319_Nitrobacter_hamburgensis_X14_723636-725112_DIR+... at +/97.77%
rRNA_CP000115_Nitrobacter_winogradskyi_Nb_255_638310-639786_DIR+... at +/98.04%
rRNA_CP002821_Oligotropha_carboxidovorans_OM4_3296392-3297868_DIR-... at +/97.83%
rRNA_CP000283_Rhodopseudomonas_palustris_BisB5_4550893-4552369_DIR-... at +/97.36%
rRNA_CP000283_Rhodopseudomonas_palustris_BisB5_407222-408698_DIR-... at +/97.36%
Cluster: 526
Bacteria:Bacteroidetes:Sphingobacteriia:Sphingobacteriales:Chitinophagaceae:Chitinophaga:uncultured_
Bacteria:Bacteroidetes:Sphingobacteriia:Sphingobacteriales:Chitinophagaceae:Chitinophaga:uncultured_
rRNA_CP001699_Chitinophaga_pinensis_DSM_2588_1727656-1729169_DIR+... *
rRNA_CP001699_Chitinophaga_pinensis_DSM_2588_1700268-1701781_DIR+... at +/99.87%
rRNA_CP001699_Chitinophaga_pinensis_DSM_2588_1720052-1721565_DIR+... at +/99.80%
rRNA_CP001699_Chitinophaga_pinensis_DSM_2588_1711143-1712656_DIR+... at +/100.00%
rRNA_CP001699_Chitinophaga_pinensis_DSM_2588_1705744-1707257_DIR+... at +/99.87%
rRNA_CP001699_Chitinophaga_pinensis_DSM_2588_1725733-1727246_DIR+... at +/99.67%
Cluster: 7
Bacteria:Proteobacteria:Alphaproteobacteria:Rickettsiales:Rickettsiaceae:Rickettsia:Unclassified:Unc
rRNA_CP003334_Candidatus_Rickettsia_amblyommii_str__GAT_30V_1091111-1092597_DIR-... at +/98.32%
rRNA_CP001612_Rickettsia_africae_ESF_5_893141-894630_DIR-... at +/98.32%
rRNA_CP000847_Rickettsia_akari_str__Hartford_864184-865670_DIR-... at +/97.85%
rRNA_CP003338_Rickettsia_australis_str__Cutlack_558542-560029_DIR+... at +/98.32%
rRNA_CP000087_Rickettsia_bellii_RML369_C_537812-539298_DIR+... at +/98.39%
rRNA_CP000409_Rickettsia_canadensis_str__McKiel_385956-387442_DIR+... at +/98.05%
rRNA_AE006914_Rickettsia_conorii_str__Malish_7_884606-886092_DIR-... at +/98.59%
rRNA_CP000053_Rickettsia_felis_URRWXCal2_456399-457885_DIR+... at +/98.45%
rRNA_CP002912_Rickettsia_heilongjiangensis_054_895230-896716_DIR-... at +/98.52%
rRNA_CM001467_Rickettsia_helvetica_C9P9_chromosome__whole_genome_shotgun_sequence_522937-524423_DIR+
rRNA_AP011533_Rickettsia_japonica_YH_DNA_889312-890798_DIR+... at +/98.45%
rRNA_CP000683_Rickettsia_massiliae_MTU5_968396-969882_DIR-... at +/98.72%
rRNA_CP003340_Rickettsia_montanensis_str__OSU_85_930_336478-337964_DIR-... at +/98.52%
rRNA_CP003341_Rickettsia_parkeri_str__Portsmouth_918887-920374_DIR-... at +/98.32%
rRNA_CP001227_Rickettsia_peacockii_str__Rustic_1191454-1192940_DIR-... at +/98.59%
rRNA_CP003308_Rickettsia_philipii_str__364D_904418-905904_DIR-... at +/98.52%
rRNA_CP003342_Rickettsia_rhipicephali_str__3_7_female6_CWPP_981778-983264_DIR-... at +/98.52%
rRNA_CP003309_Rickettsia_rickettsii_str__Hino_888020-889506_DIR-... at +/98.59%
rRNA_AABW01000001_Rickettsia_sibirica_246_chromosome__complete_sequence__whole_gen_1044189-1045677_D
rRNA_CP003375_Rickettsia_slovaca_str__D_CWPP_892248-893734_DIR-... at +/98.52%
rRNA_CP003397_Rickettsia_typhi_str__TH1527_778059-781256_DIR-... *
Cluster: 369
Bacteria:Verrucomicrobia:Verrucomicrobiae:Verrucomicrobiales:Verrucomicrobiaceae:Verrucomicrobium:un
Bacteria:Verrucomicrobia:Verrucomicrobiae:Verrucomicrobiales:Verrucomicrobiaceae:Verrucomicrobium:un
rRNA_ABIZ01000001_Verrucomicrobium_spinosum_DSM_4136_chromosome__whole_genome_shot_2579001-2580527_D
rRNA_ABIZ01000001_Verrucomicrobium_spinosum_DSM_4136_chromosome__whole_genome_shot_5019488-5021014_D
rRNA_ABIZ01000001_Verrucomicrobium_spinosum_DSM_4136_chromosome__whole_genome_shot_5471746-5473272_D
rRNA_ABIZ01000001_Verrucomicrobium_spinosum_DSM_4136_chromosome__whole_genome_shot_8132150-8133676_D
Cluster: 420
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Oxalobacteraceae:Herbaspirillum:Unclassif
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Oxalobacteraceae:uncultured:Unclassified:
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Oxalobacteraceae:Paucimonas:uncultured_ba
rRNA_CP002039_Herbaspirillum_seropedicae_SmR1_519651-521172_DIR+... at +/99.87%
rRNA_CP002039_Herbaspirillum_seropedicae_SmR1_4446607-4448129_DIR-... *
rRNA_CP002039_Herbaspirillum_seropedicae_SmR1_5431898-5433419_DIR-... at +/99.87%
Cluster: 425
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:Unclassified:Unclassified:
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:Rhizobacter:uncultured_bac
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:Variovorax:Unclassified:Un
rRNA_CP002417_Variovorax_paradoxus_EPS_172901-174423_DIR+... *
rRNA_CP002417_Variovorax_paradoxus_EPS_5899432-5900954_DIR-... at +/100.00%
Cluster: 363
Bacteria:Proteobacteria:Gammaproteobacteria:Pseudomonadales:Pseudomonadaceae:Pseudomonas:Unclassifie
rRNA_CP002585_Pseudomonas_brassicacearum_subsp__brassicacearum_NFM421_182480-184004_DIR+... at +/97.
rRNA_CP002585_Pseudomonas_brassicacearum_subsp__brassicacearum_NFM421_5807811-5809335_DIR-... at +/9
rRNA_CP002585_Pseudomonas_brassicacearum_subsp__brassicacearum_NFM421_6171604-6173128_DIR-... at +/9
rRNA_CP002585_Pseudomonas_brassicacearum_subsp__brassicacearum_NFM421_844640-846164_DIR+... at +/97.
rRNA_CP002585_Pseudomonas_brassicacearum_subsp__brassicacearum_NFM421_4844950-4846474_DIR-... at +/9
rRNA_CP009290_Pseudomonas_chlororaphis_subsp__aurantiaca_strain_JD37_732141-733665_DIR+... at +/97.5
rRNA_CP009290_Pseudomonas_chlororaphis_subsp__aurantiaca_strain_JD37_5825843-5827367_DIR-... at +/97
rRNA_CP009290_Pseudomonas_chlororaphis_subsp__aurantiaca_strain_JD37_2166902-2168426_DIR+... at +/97
rRNA_CP009290_Pseudomonas_chlororaphis_subsp__aurantiaca_strain_JD37_1114989-1116513_DIR+... at +/97
rRNA_CP009290_Pseudomonas_chlororaphis_subsp__aurantiaca_strain_JD37_6578904-6580428_DIR-... at +/97
rRNA_CP007039_Pseudomonas_cichorii_JBC1_5342972-5344498_DIR-... *
rRNA_CP007039_Pseudomonas_cichorii_JBC1_735981-737507_DIR+... at +/100.00%
rRNA_CP007039_Pseudomonas_cichorii_JBC1_2030176-2031702_DIR+... at +/100.00%
rRNA_CP007039_Pseudomonas_cichorii_JBC1_1557599-1559125_DIR+... at +/99.93%
rRNA_CP007039_Pseudomonas_cichorii_JBC1_921583-923109_DIR+... at +/100.00%
rRNA_CP007039_Pseudomonas_cichorii_JBC1_5857992-5859518_DIR-... at +/100.00%
rRNA_CT573326_Pseudomonas_entomophila_str__L48_chromosome_complete_sequence_5002159-5003683_DIR-...
rRNA_CT573326_Pseudomonas_entomophila_str__L48_chromosome_complete_sequence_115499-117023_DIR+... at
rRNA_CT573326_Pseudomonas_entomophila_str__L48_chromosome_complete_sequence_1375553-1377077_DIR+...
rRNA_CT573326_Pseudomonas_entomophila_str__L48_chromosome_complete_sequence_696508-698032_DIR+... at
rRNA_CT573326_Pseudomonas_entomophila_str__L48_chromosome_complete_sequence_3799143-3800667_DIR-...
rRNA_CT573326_Pseudomonas_entomophila_str__L48_chromosome_complete_sequence_2739321-2740845_DIR+...
rRNA_CP003150_Pseudomonas_fluorescens_F113_165904-167428_DIR+... at +/97.38%
rRNA_CP003150_Pseudomonas_fluorescens_F113_6153702-6155226_DIR-... at +/97.38%
rRNA_CP003150_Pseudomonas_fluorescens_F113_2107401-2108925_DIR+... at +/97.38%
rRNA_CP003150_Pseudomonas_fluorescens_F113_845030-846554_DIR+... at +/97.38%
rRNA_CP003150_Pseudomonas_fluorescens_F113_5764934-5766458_DIR-... at +/97.38%
rRNA_CP005960_Pseudomonas_mandelii_JR_1_1653022-1654547_DIR-... at +/98.10%
rRNA_CP005960_Pseudomonas_mandelii_JR_1_4588939-4590465_DIR+... at +/98.10%
rRNA_CP005960_Pseudomonas_mandelii_JR_1_3777762-3779287_DIR-... at +/98.10%
rRNA_CP005960_Pseudomonas_mandelii_JR_1_6771750-6773275_DIR+... at +/98.10%
rRNA_CP005960_Pseudomonas_mandelii_JR_1_4921953-4923478_DIR+... at +/98.10%
rRNA_CP005960_Pseudomonas_mandelii_JR_1_3114938-3116463_DIR-... at +/98.10%
rRNA_CP006979_Pseudomonas_monteilii_SB3101_4216726-4218250_DIR-... at +/97.18%
rRNA_CP006979_Pseudomonas_monteilii_SB3101_121488-123012_DIR+... at +/97.18%
rRNA_CP006979_Pseudomonas_monteilii_SB3101_5694782-5696306_DIR+... at +/97.18%
rRNA_CP006979_Pseudomonas_monteilii_SB3101_1516466-1517990_DIR+... at +/97.18%
rRNA_CP006979_Pseudomonas_monteilii_SB3101_293641-295165_DIR+... at +/97.18%
rRNA_CP006979_Pseudomonas_monteilii_SB3101_4684656-4686180_DIR-... at +/97.18%
rRNA_CP009365_Pseudomonas_mosselii_SJ10_3505512-3507036_DIR-... at +/97.18%
rRNA_CP009365_Pseudomonas_mosselii_SJ10_5290892-5292416_DIR+... at +/97.05%
rRNA_CP009365_Pseudomonas_mosselii_SJ10_4131287-4132811_DIR-... at +/97.18%
rRNA_CP009365_Pseudomonas_mosselii_SJ10_5838052-5839576_DIR+... at +/97.18%
rRNA_CP009365_Pseudomonas_mosselii_SJ10_2966352-2967876_DIR-... at +/97.18%
rRNA_CP009365_Pseudomonas_mosselii_SJ10_5628577-5630101_DIR+... at +/97.18%
rRNA_CP009365_Pseudomonas_mosselii_SJ10_4057776-4059300_DIR-... at +/97.18%
rRNA_CP004045_Pseudomonas_poae_RE_1_1_14_1279292-1280816_DIR+... at +/97.18%
rRNA_CP004045_Pseudomonas_poae_RE_1_1_14_4136719-4138243_DIR-... at +/97.18%
rRNA_CP004045_Pseudomonas_poae_RE_1_1_14_5506895-5508419_DIR+... at +/97.18%
rRNA_CP004045_Pseudomonas_poae_RE_1_1_14_4900297-4901821_DIR+... at +/97.11%
rRNA_CP004045_Pseudomonas_poae_RE_1_1_14_3808311-3809835_DIR-... at +/97.18%
rRNA_CP000076_Pseudomonas_protegens_Pf_5_122818-124344_DIR+... at +/97.25%
rRNA_CP000076_Pseudomonas_protegens_Pf_5_6012600-6014126_DIR-... at +/97.25%
rRNA_CP000076_Pseudomonas_protegens_Pf_5_6386420-6387946_DIR-... at +/97.25%
rRNA_CP000076_Pseudomonas_protegens_Pf_5_854059-855585_DIR+... at +/97.25%
rRNA_CP000076_Pseudomonas_protegens_Pf_5_4813648-4815174_DIR-... at +/97.18%
rRNA_CP000712_Pseudomonas_putida_F1_3913247-3914771_DIR-... at +/97.11%
rRNA_CP000712_Pseudomonas_putida_F1_185131-186655_DIR+... at +/97.11%
rRNA_CP000712_Pseudomonas_putida_F1_1342820-1344344_DIR+... at +/97.05%
rRNA_CP000712_Pseudomonas_putida_F1_717173-718697_DIR+... at +/97.11%
rRNA_CP000712_Pseudomonas_putida_F1_539844-541368_DIR+... at +/97.11%
rRNA_CP000712_Pseudomonas_putida_F1_5074873-5076397_DIR-... at +/97.05%
rRNA_CP000058_Pseudomonas_syringae_pv__phaseolicola_1448A_804008-805534_DIR+... at +/98.43%
rRNA_CP000058_Pseudomonas_syringae_pv__phaseolicola_1448A_5250702-5252228_DIR-... at +/98.43%
rRNA_CP000058_Pseudomonas_syringae_pv__phaseolicola_1448A_5782831-5784357_DIR-... at +/98.43%
rRNA_CP000058_Pseudomonas_syringae_pv__phaseolicola_1448A_1048743-1050269_DIR+... at +/98.43%
rRNA_CP000058_Pseudomonas_syringae_pv__phaseolicola_1448A_3635161-3636687_DIR-... at +/98.43%
rRNA_CP000075_Pseudomonas_syringae_pv__syringae_B728a_772102-773628_DIR+... at +/98.30%
rRNA_CP000075_Pseudomonas_syringae_pv__syringae_B728a_5426732-5428258_DIR-... at +/98.23%
rRNA_CP000075_Pseudomonas_syringae_pv__syringae_B728a_5951654-5953180_DIR-... at +/98.23%
rRNA_CP000075_Pseudomonas_syringae_pv__syringae_B728a_964692-966218_DIR+... at +/98.30%
rRNA_CP000075_Pseudomonas_syringae_pv__syringae_B728a_3851145-3852671_DIR-... at +/98.30%
rRNA_AE016853_Pseudomonas_syringae_pv__tomato_str__DC3000_666734-668260_DIR+... at +/97.58%
rRNA_AE016853_Pseudomonas_syringae_pv__tomato_str__DC3000_6217620-6219146_DIR-... at +/97.58%
rRNA_AE016853_Pseudomonas_syringae_pv__tomato_str__DC3000_1072085-1073611_DIR+... at +/97.58%
rRNA_AE016853_Pseudomonas_syringae_pv__tomato_str__DC3000_827548-829074_DIR+... at +/97.58%
rRNA_AE016853_Pseudomonas_syringae_pv__tomato_str__DC3000_3873149-3874675_DIR-... at +/97.58%
Cluster: 828
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Rhizobiaceae:Rhizobium:uncultured_bacterium:
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Rhizobiaceae:Ensifer:Sinorhizobium:Unclassif
rRNA_AE007869_Agrobacterium_tumefaciens_str__C58_circular_chromosome__complete_seq_56749-58221_DIR+.
rRNA_AE007870_Agrobacterium_tumefaciens_str__C58_linear_chromosome__complete_seque_1304317-1305789_D
rRNA_AE007870_Agrobacterium_tumefaciens_str__C58_linear_chromosome__complete_seque_1041820-1043292_D
rRNA_AE007869_Agrobacterium_tumefaciens_str__C58_circular_chromosome__complete_seq_2517149-2518621_D
Cluster: 586
Bacteria:Actinobacteria:Micrococcales:Microbacteriaceae:Microbacterium:Unclassified:Unclassified:Unc
rRNA_AP012052_Microbacterium_testaceum_StLB037_DNA_2360815-2362324_DIR+... *
rRNA_AP012052_Microbacterium_testaceum_StLB037_DNA_5067-6576_DIR-... at +/99.93%
Cluster: 587
Bacteria:Bacteroidetes:Sphingobacteriia:Sphingobacteriales:Sphingobacteriaceae:Pedobacter:uncultured
rRNA_CP001681_Pedobacter_heparinus_DSM_2366_1368500-1370009_DIR+... *
rRNA_CP001681_Pedobacter_heparinus_DSM_2366_4298721-4300230_DIR-... at +/100.00%
rRNA_CP001681_Pedobacter_heparinus_DSM_2366_4306042-4307551_DIR-... at +/100.00%
Cluster: 585
Bacteria:Actinobacteria:Micrococcales:Intrasporangiaceae:Unclassified:Unclassified:Unclassified:Uncl
rRNA_CP002343_Intrasporangium_calvum_DSM_43043_1359051-1360560_DIR+... *
rRNA_CP002343_Intrasporangium_calvum_DSM_43043_1760237-1761746_DIR+... at +/99.93%
Cluster: 443
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:uncultured:uncultured_bact
rRNA_CP000884_Delftia_acidovorans_SPH_1_723807-725327_DIR+... *
rRNA_CP000884_Delftia_acidovorans_SPH_1_6692893-6694413_DIR-... at +/100.00%
rRNA_CP000884_Delftia_acidovorans_SPH_1_2776169-2777689_DIR+... at +/100.00%
rRNA_CP000884_Delftia_acidovorans_SPH_1_729453-730973_DIR+... at +/100.00%
rRNA_CP000884_Delftia_acidovorans_SPH_1_6687247-6688767_DIR-... at +/100.00%
Cluster: 442
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:Unclassified:Unclassified:
rRNA_CP006704_Comamonas_testosteroni_TK102_1457919-1459439_DIR+... *
rRNA_CP006704_Comamonas_testosteroni_TK102_552885-554405_DIR+... at +/99.93%
rRNA_CP006704_Comamonas_testosteroni_TK102_5757544-5759064_DIR-... at +/99.93%
rRNA_CP006704_Comamonas_testosteroni_TK102_5746092-5747612_DIR-... at +/99.93%
rRNA_CP006704_Comamonas_testosteroni_TK102_547158-548678_DIR+... at +/99.93%
rRNA_CP006704_Comamonas_testosteroni_TK102_5751818-5753338_DIR-... at +/99.93%
rRNA_CP006704_Comamonas_testosteroni_TK102_558611-560131_DIR+... at +/99.93%
rRNA_CP006704_Comamonas_testosteroni_TK102_541432-542952_DIR+... at +/99.87%
rRNA_CP006704_Comamonas_testosteroni_TK102_1452192-1453712_DIR+... at +/99.87%
Cluster: 441
Bacteria:Firmicutes:Clostridia:Clostridiales:Lachnospiraceae:Cellulosilyticum:uncultured_organism:Un
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_151628-153148_DIR+... *
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_3624239-3625752_DIR-... at +/98.75%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_76847-78359_DIR+... at +/97.55%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_422560-424073_DIR+... at +/98.35%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_602287-603800_DIR+... at +/98.94%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_46244-47755_DIR+... at +/98.41%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_571993-573507_DIR+... at +/97.43%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_84401-85917_DIR+... at +/97.69%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_10458-11969_DIR+... at +/98.02%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_1229193-1230706_DIR+... at +/97.95%
rRNA_CP002582_Clostridium_lentocellum_DSM_5427_141508-143021_DIR+... at +/99.93%
Cluster: 380
Bacteria:Proteobacteria:Betaproteobacteria:Unclassified:Unclassified:Unclassified:Unclassified:Uncla
rRNA_CP002056_Methylotenera_versatilis_301_127113-128638_DIR+... *
rRNA_CP002056_Methylotenera_versatilis_301_726526-728051_DIR+... at +/100.00%
rRNA_CP002056_Methylotenera_versatilis_301_133281-134806_DIR+... at +/100.00%
Cluster: 381
Bacteria:Proteobacteria:Deltaproteobacteria:Myxococcales:Cystobacterineae:Myxococcaceae:Myxococcus:M
Bacteria:Proteobacteria:Deltaproteobacteria:Myxococcales:Cystobacterineae:Myxococcaceae:Unclassified
rRNA_CP003389_Corallococcus_coralloides_DSM_2259_128437-129960_DIR+... at +/97.83%
rRNA_CP003389_Corallococcus_coralloides_DSM_2259_9896798-9898322_DIR-... at +/97.84%
rRNA_CP003389_Corallococcus_coralloides_DSM_2259_3335495-3337018_DIR+... at +/97.97%
rRNA_CP002830_Myxococcus_fulvus_HW_1_2300861-2302386_DIR+... *
rRNA_CP002830_Myxococcus_fulvus_HW_1_7739832-7741357_DIR-... at +/100.00%
rRNA_CP002830_Myxococcus_fulvus_HW_1_8564285-8565810_DIR-... at +/100.00%
rRNA_CP004025_Myxococcus_stipitatus_DSM_14675_5099965-5101487_DIR+... at +/98.56%
rRNA_CP004025_Myxococcus_stipitatus_DSM_14675_6635294-6636817_DIR-... at +/98.49%
rRNA_CP004025_Myxococcus_stipitatus_DSM_14675_10185750-10187273_DIR-... at +/98.49%
rRNA_CP000113_Myxococcus_xanthus_DK_1622_376448-377973_DIR+... at +/99.54%
rRNA_CP000113_Myxococcus_xanthus_DK_1622_5897045-5898570_DIR-... at +/99.54%
rRNA_CP000113_Myxococcus_xanthus_DK_1622_8965186-8966711_DIR-... at +/99.54%
rRNA_CP000113_Myxococcus_xanthus_DK_1622_3293012-3294537_DIR+... at +/99.54%
Cluster: 148
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfuromonadales:Geobacteraceae:Geobacter:Unclassified
rRNA_CP001390_Geobacter_daltonii_FRC_32_2111707-2113250_DIR+... *
rRNA_CP001390_Geobacter_daltonii_FRC_32_3989243-3990786_DIR-... at +/100.00%
rRNA_CP000698_Geobacter_uraniireducens_Rf4_1302608-1304149_DIR+... at +/98.38%
rRNA_CP000698_Geobacter_uraniireducens_Rf4_3817083-3818624_DIR-... at +/98.38%
Cluster: 386
Bacteria:Actinobacteria:Streptosporangiales:Nocardiopsaceae:Nocardiopsis:Unclassified:Unclassified:U
rRNA_CP000088_Thermobifida_fusca_YX_3594546-3596071_DIR-... *
rRNA_CP000088_Thermobifida_fusca_YX_2390525-2392050_DIR-... at +/99.93%
rRNA_CP000088_Thermobifida_fusca_YX_2785419-2786944_DIR-... at +/99.93%
rRNA_CP000088_Thermobifida_fusca_YX_3042878-3044403_DIR-... at +/99.87%
Cluster: 106
Bacteria:Firmicutes:Bacilli:Lactobacillales:Lactobacillaceae:Lactobacillus:Lactobacillus_salivarius:
rRNA_CP002034_Lactobacillus_salivarius_CECT_5713_1301422-1302971_DIR-... *
rRNA_CP002034_Lactobacillus_salivarius_CECT_5713_74985-76534_DIR+... at +/100.00%
rRNA_CP002034_Lactobacillus_salivarius_CECT_5713_480955-482504_DIR+... at +/100.00%
rRNA_CP002034_Lactobacillus_salivarius_CECT_5713_435417-436966_DIR+... at +/99.55%
rRNA_CP002034_Lactobacillus_salivarius_CECT_5713_1411125-1412674_DIR-... at +/99.94%
rRNA_CP002034_Lactobacillus_salivarius_CECT_5713_218258-219807_DIR+... at +/99.94%
rRNA_CP002034_Lactobacillus_salivarius_CECT_5713_1818062-1819611_DIR-... at +/99.94%
Cluster: 39
Bacteria:Firmicutes:Clostridia:Clostridiales:Ruminococcaceae:Incertae_Sedis:uncultured_bacterium:Unc
Bacteria:Firmicutes:Clostridia:Clostridiales:Ruminococcaceae:Incertae_Sedis:Unclassified:Unclassifie
rRNA_CP003065_Clostridium_clariflavum_DSM_19732_2605345-2606978_DIR-... *
rRNA_CP003065_Clostridium_clariflavum_DSM_19732_4884681-4886314_DIR-... at +/99.94%
rRNA_CP003065_Clostridium_clariflavum_DSM_19732_3890837-3892470_DIR-... at +/100.00%
rRNA_CP003065_Clostridium_clariflavum_DSM_19732_4508507-4510140_DIR-... at +/100.00%
rRNA_CP003065_Clostridium_clariflavum_DSM_19732_4516410-4518043_DIR-... at +/100.00%
rRNA_CP003065_Clostridium_clariflavum_DSM_19732_3827614-3829247_DIR-... at +/100.00%
Cluster: 843
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Methylobacteriaceae:Methylobacterium:Unclass
rRNA_CP001349_Methylobacterium_nodulans_ORS_2060_6799855-6801326_DIR+... *
rRNA_CP001349_Methylobacterium_nodulans_ORS_2060_2190105-2191576_DIR+... at +/100.00%
rRNA_CP001349_Methylobacterium_nodulans_ORS_2060_4914506-4915977_DIR+... at +/100.00%
rRNA_CP001349_Methylobacterium_nodulans_ORS_2060_3828401-3829872_DIR+... at +/100.00%
rRNA_CP001349_Methylobacterium_nodulans_ORS_2060_209967-211438_DIR-... at +/100.00%
rRNA_CP001349_Methylobacterium_nodulans_ORS_2060_3802919-3804390_DIR+... at +/100.00%
rRNA_CP001349_Methylobacterium_nodulans_ORS_2060_6007221-6008692_DIR+... at +/100.00%
Cluster: 841
Bacteria:Proteobacteria:Alphaproteobacteria:Rhodospirillales:Rhodospirillaceae:Magnetospirillum:Uncl
rRNA_HG794546_Magnetospirillum_gryphiswaldense_MSR_1_v2_3843299-3844770_DIR+... *
rRNA_HG794546_Magnetospirillum_gryphiswaldense_MSR_1_v2_2089219-2090690_DIR-... at +/100.00%
Cluster: 840
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Hyphomicrobiaceae:Hyphomicrobium:Unclassifie
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Hyphomicrobiaceae:Hyphomicrobium:uncultured_
rRNA_CP006912_Hyphomicrobium_nitrativorans_NL23_698490-699961_DIR+... *
Cluster: 30
Bacteria:Firmicutes:Clostridia:Clostridiales:Syntrophomonadaceae:Syntrophomonas:Unclassified:Unclass
rRNA_CP000448_Syntrophomonas_wolfei_subsp__wolfei_str__Goettingen_G311_417882-419565_DIR+... *
Cluster: 37
Bacteria:Firmicutes:Clostridia:Clostridiales:Ruminococcaceae:Incertae_Sedis:uncultured_bacterium:Unc
Bacteria:Firmicutes:Clostridia:Clostridiales:Ruminococcaceae:Incertae_Sedis:Unclassified:Unclassifie
Bacteria:Firmicutes:Clostridia:Clostridiales:Ruminococcaceae:Incertae_Sedis:Unclassified:Unclassifie
rRNA_CP001348_Clostridium_cellulolyticum_H10_4055819-4057459_DIR-... *
rRNA_CP001348_Clostridium_cellulolyticum_H10_654800-656440_DIR+... at +/99.82%
rRNA_CP001348_Clostridium_cellulolyticum_H10_3983643-3985283_DIR-... at +/99.88%
rRNA_CP001348_Clostridium_cellulolyticum_H10_605119-606759_DIR+... at +/99.63%
rRNA_CP001348_Clostridium_cellulolyticum_H10_2914118-2915758_DIR-... at +/99.88%
rRNA_CP001348_Clostridium_cellulolyticum_H10_887840-889480_DIR+... at +/99.51%
rRNA_CP001348_Clostridium_cellulolyticum_H10_453791-455431_DIR+... at +/99.76%
rRNA_CP001348_Clostridium_cellulolyticum_H10_1851052-1852690_DIR+... at +/98.54%
Cluster: 789
Bacteria:Cyanobacteria:SubsectionIII:FamilyI:Crinalium:uncultured_cyanobacterium:Unclassified:Unclas
rRNA_CP003620_Crinalium_epipsammum_PCC_9333_5306153-5307631_DIR-... *
rRNA_CP003620_Crinalium_epipsammum_PCC_9333_3230191-3231669_DIR-... at +/99.86%
rRNA_CP003620_Crinalium_epipsammum_PCC_9333_4441432-4442910_DIR-... at +/99.46%
rRNA_CP003620_Crinalium_epipsammum_PCC_9333_5223431-5224909_DIR-... at +/100.00%
Cluster: 117
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfobacterales:Desulfobulbaceae:Desulfocapsa:Unclassi
rRNA_CP003985_Desulfocapsa_sulfexigens_DSM_10523_3691502-3693049_DIR+... *
rRNA_CP003985_Desulfocapsa_sulfexigens_DSM_10523_2137091-2138638_DIR-... at +/100.00%
rRNA_CP003985_Desulfocapsa_sulfexigens_DSM_10523_3983919-3985466_DIR+... at +/100.00%
Cluster: 848
Bacteria:Chloroflexi:Herpetosiphonales:Herpetosiphonaceae:Herpetosiphon:uncultured_bacterium:Unclass
rRNA_CP000875_Herpetosiphon_aurantiacus_DSM_785_1226128-1227597_DIR+... *
rRNA_CP000875_Herpetosiphon_aurantiacus_DSM_785_4627567-4629036_DIR-... at +/99.93%
rRNA_CP000875_Herpetosiphon_aurantiacus_DSM_785_5447191-5448660_DIR-... at +/99.93%
rRNA_CP000875_Herpetosiphon_aurantiacus_DSM_785_1974899-1976368_DIR+... at +/100.00%
rRNA_CP000875_Herpetosiphon_aurantiacus_DSM_785_4006750-4008219_DIR-... at +/99.93%
Cluster: 519
Bacteria:Actinobacteria:Streptomycetales:Streptomycetaceae:Streptomyces:Unclassified:Unclassified:Un
Bacteria:Actinobacteria:Streptomycetales:Streptomycetaceae:Streptomyces:Unclassified:Unclassified:Un
Bacteria:Actinobacteria:Streptomycetales:Streptomycetaceae:Streptomyces:Unclassified:Unclassified:Un
Bacteria:Actinobacteria:Streptomycetales:Streptomycetaceae:Streptomyces:Unclassified:Unclassified:Un
rRNA_CP004370_Streptomyces_albus_J1074_1346021-1347535_DIR-... at +/97.23%
rRNA_CP004370_Streptomyces_albus_J1074_4028624-4030138_DIR+... at +/97.23%
rRNA_CP004370_Streptomyces_albus_J1074_3184024-3185538_DIR-... at +/97.23%
rRNA_CP004370_Streptomyces_albus_J1074_6166251-6167765_DIR+... at +/97.23%
rRNA_CP004370_Streptomyces_albus_J1074_870727-872241_DIR-... at +/97.16%
rRNA_CP004370_Streptomyces_albus_J1074_5711491-5713005_DIR+... at +/97.16%
rRNA_CP004370_Streptomyces_albus_J1074_2247814-2249328_DIR-... at +/97.23%
rRNA_CP002047_Streptomyces_bingchenggensis_BCW_1_2730567-2732082_DIR-... *
rRNA_CP002047_Streptomyces_bingchenggensis_BCW_1_5573530-5575045_DIR+... at +/100.00%
rRNA_CP002047_Streptomyces_bingchenggensis_BCW_1_9702358-9703873_DIR+... at +/100.00%
rRNA_CP002047_Streptomyces_bingchenggensis_BCW_1_7286442-7287957_DIR+... at +/100.00%
rRNA_CP002047_Streptomyces_bingchenggensis_BCW_1_6309865-6311380_DIR+... at +/100.00%
rRNA_CP002047_Streptomyces_bingchenggensis_BCW_1_4371315-4372830_DIR-... at +/100.00%
rRNA_CP003219_Streptomyces_cattleya_DSM_46488_802727-804240_DIR-... at +/97.16%
rRNA_CP003219_Streptomyces_cattleya_DSM_46488_3613623-3615136_DIR+... at +/97.82%
rRNA_CP003219_Streptomyces_cattleya_DSM_46488_2144384-2145897_DIR-... at +/97.29%
rRNA_CP003219_Streptomyces_cattleya_DSM_46488_2721375-2722888_DIR-... at +/97.75%
rRNA_CP003219_Streptomyces_cattleya_DSM_46488_4855661-4857174_DIR+... at +/97.75%
rRNA_CP003219_Streptomyces_cattleya_DSM_46488_1078945-1080458_DIR-... at +/97.29%
rRNA_CP009124_Streptomyces_lividans_TK24_2274316-2275830_DIR-... at +/97.16%
rRNA_CP009124_Streptomyces_lividans_TK24_4665692-4667206_DIR+... at +/97.29%
rRNA_CP009124_Streptomyces_lividans_TK24_6865339-6866853_DIR+... at +/97.29%
rRNA_CP009124_Streptomyces_lividans_TK24_6421011-6422525_DIR+... at +/97.29%
rRNA_CP009124_Streptomyces_lividans_TK24_5040281-5041795_DIR+... at +/97.29%
rRNA_CP009124_Streptomyces_lividans_TK24_3955103-3956617_DIR-... at +/97.23%
rRNA_CP002994_Streptomyces_violaceusniger_Tu_4113_6481758-6483273_DIR-... at +/98.09%
rRNA_CP002994_Streptomyces_violaceusniger_Tu_4113_9686399-9687913_DIR-... at +/98.15%
rRNA_CP002994_Streptomyces_violaceusniger_Tu_4113_489062-490576_DIR+... at +/98.15%
rRNA_CP002994_Streptomyces_violaceusniger_Tu_4113_7883823-7885337_DIR-... at +/98.15%
Cluster: 518
Bacteria:Firmicutes:Clostridia:Clostridiales:Ruminococcaceae:uncultured:Unclassified:Unclassified
rRNA_CP002416_Clostridium_thermocellum_DSM_1313_497122-498637_DIR+... *
rRNA_CP002416_Clostridium_thermocellum_DSM_1313_3544459-3545974_DIR-... at +/100.00%
rRNA_CP002416_Clostridium_thermocellum_DSM_1313_747703-749218_DIR+... at +/99.93%
rRNA_CP002416_Clostridium_thermocellum_DSM_1313_684465-685980_DIR+... at +/99.80%
Cluster: 438
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Alcaligenaceae:Achromobacter:Unclassified
rRNA_CP002287_Achromobacter_xylosoxidans_A8_817958-819476_DIR+... at +/97.83%
rRNA_CP002287_Achromobacter_xylosoxidans_A8_5160189-5161707_DIR-... at +/97.83%
rRNA_CP002287_Achromobacter_xylosoxidans_A8_2206261-2207779_DIR+... at +/97.83%
rRNA_AM167904_Bordetella_avium_197N_3150542-3152060_DIR-... at +/98.55%
rRNA_AM167904_Bordetella_avium_197N_2398235-2399753_DIR-... at +/98.55%
rRNA_AM167904_Bordetella_avium_197N_2699437-2700955_DIR-... at +/98.55%
rRNA_HE965806_Bordetella_bronchiseptica_253_4514918-4516436_DIR+... at +/99.87%
rRNA_HE965806_Bordetella_bronchiseptica_253_1276713-1278231_DIR-... at +/99.87%
rRNA_HE965806_Bordetella_bronchiseptica_253_1782977-1784495_DIR-... at +/99.87%
rRNA_CP007495_Bordetella_holmesii_44057_2006082-2007601_DIR+... at +/99.41%
rRNA_CP007495_Bordetella_holmesii_44057_4360-5878_DIR-... at +/99.41%
rRNA_CP007495_Bordetella_holmesii_44057_745548-747067_DIR-... at +/99.41%
rRNA_HE965803_Bordetella_parapertussis_Bpp5_998640-1000160_DIR+... *
rRNA_HE965803_Bordetella_parapertussis_Bpp5_1888811-1890331_DIR+... at +/100.00%
rRNA_HE965803_Bordetella_parapertussis_Bpp5_1704695-1706215_DIR+... at +/100.00%
rRNA_HE965805_Bordetella_pertussis_18323_812372-813890_DIR+... at +/99.67%
rRNA_HE965805_Bordetella_pertussis_18323_3448869-3450387_DIR-... at +/99.67%
rRNA_HE965805_Bordetella_pertussis_18323_1141490-1143008_DIR+... at +/99.67%
Cluster: 439
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Burkholderiaceae:Burkholderia:Unclassifie
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Burkholderiaceae:Burkholderia:uncultured_
rRNA_CP000440_Burkholderia_ambifaria_AMMD_chromosome_1__complete_sequence_14923-16443_DIR-... *
rRNA_CP000441_Burkholderia_ambifaria_AMMD_chromosome_2__complete_sequence_1635789-1637309_DIR-... at
rRNA_CP000440_Burkholderia_ambifaria_AMMD_chromosome_1__complete_sequence_502497-504017_DIR+... at +
rRNA_CP000440_Burkholderia_ambifaria_AMMD_chromosome_1__complete_sequence_290626-292146_DIR+... at +
rRNA_CP000442_Burkholderia_ambifaria_AMMD_chromosome_3__complete_sequence_515614-517134_DIR-... at +
rRNA_CP000440_Burkholderia_ambifaria_AMMD_chromosome_1__complete_sequence_2491550-2493070_DIR-... at
rRNA_CP000458_Burkholderia_cenocepacia_HI2424_chromosome_1__complete_sequence_13550-15070_DIR-... at
rRNA_CP000459_Burkholderia_cenocepacia_HI2424_chromosome_2__complete_sequence_2380234-2381754_DIR-..
rRNA_CP000458_Burkholderia_cenocepacia_HI2424_chromosome_1__complete_sequence_606438-607958_DIR+...
rRNA_CP000458_Burkholderia_cenocepacia_HI2424_chromosome_1__complete_sequence_376974-378494_DIR+...
rRNA_CP000460_Burkholderia_cenocepacia_HI2424_chromosome_3__complete_sequence_396146-397666_DIR+...
rRNA_CP000458_Burkholderia_cenocepacia_HI2424_chromosome_1__complete_sequence_2471871-2473391_DIR-..
rRNA_CP003774_Burkholderia_cepacia_GG4_chromosome_1__complete_sequence_264554-266074_DIR+... at +/99
rRNA_CP003774_Burkholderia_cepacia_GG4_chromosome_1__complete_sequence_1298634-1300154_DIR+... at +/
rRNA_CP002600_Burkholderia_gladioli_BSR3_chromosome_2__complete_sequence_586982-588502_DIR+... at +/
rRNA_CP002599_Burkholderia_gladioli_BSR3_chromosome_1__complete_sequence_537204-538724_DIR+... at +/
rRNA_CP002599_Burkholderia_gladioli_BSR3_chromosome_1__complete_sequence_317279-318799_DIR+... at +/
rRNA_CP002600_Burkholderia_gladioli_BSR3_chromosome_2__complete_sequence_720478-721998_DIR+... at +/
rRNA_CP002599_Burkholderia_gladioli_BSR3_chromosome_1__complete_sequence_3300541-3302061_DIR-... at
rRNA_CP001503_Burkholderia_glumae_BGR1_chromosome_1__complete_sequence_257140-258660_DIR+... at +/98
rRNA_CP001504_Burkholderia_glumae_BGR1_chromosome_2__complete_sequence_370583-372103_DIR+... at +/98
rRNA_CP001503_Burkholderia_glumae_BGR1_chromosome_1__complete_sequence_2922642-2924162_DIR-... at +/
rRNA_CP001503_Burkholderia_glumae_BGR1_chromosome_1__complete_sequence_469341-470861_DIR+... at +/98
rRNA_CP001504_Burkholderia_glumae_BGR1_chromosome_2__complete_sequence_468316-469836_DIR+... at +/98
rRNA_CP000011_Burkholderia_mallei_ATCC_23344_chromosome_2__complete_sequence_554956-556474_DIR+... a
rRNA_CP000010_Burkholderia_mallei_ATCC_23344_chromosome_1__complete_sequence_1883679-1885197_DIR-...
rRNA_CP000010_Burkholderia_mallei_ATCC_23344_chromosome_1__complete_sequence_2676315-2677833_DIR-...
rRNA_CP000011_Burkholderia_mallei_ATCC_23344_chromosome_2__complete_sequence_886470-887988_DIR+... a
rRNA_AP009385_Burkholderia_multivorans_ATCC_17616_DNA__chromosome_1_411340-412860_DIR+... at +/99.01
rRNA_AP009386_Burkholderia_multivorans_ATCC_17616_genomic_DNA__chromosome_2_2150263-2151783_DIR-...
rRNA_AP009385_Burkholderia_multivorans_ATCC_17616_DNA__chromosome_1_2367733-2369253_DIR-... at +/99.
rRNA_AP009385_Burkholderia_multivorans_ATCC_17616_DNA__chromosome_1_3261934-3263454_DIR-... at +/99.
rRNA_AP009387_Burkholderia_multivorans_ATCC_17616_genomic_DNA__chromosome_3_902351-903871_DIR-... at
rRNA_CP003782_Burkholderia_pseudomallei_BPC006_chromosome_II__complete_sequence_484009-485527_DIR+..
rRNA_CP003781_Burkholderia_pseudomallei_BPC006_chromosome_I__complete_sequence_3506130-3507648_DIR-.
rRNA_CP003781_Burkholderia_pseudomallei_BPC006_chromosome_I__complete_sequence_3761743-3763261_DIR-.
rRNA_CP003781_Burkholderia_pseudomallei_BPC006_chromosome_I__complete_sequence_1337331-1338849_DIR+.
rRNA_CP004097_Burkholderia_thailandensis_2002721723_chromosome_1__complete_sequenc_1258778-1260296_D
rRNA_CP004098_Burkholderia_thailandensis_2002721723_chromosome_2__complete_sequenc_2527832-2529350_D
rRNA_CP004097_Burkholderia_thailandensis_2002721723_chromosome_1__complete_sequenc_3205162-3206680_D
rRNA_CP004097_Burkholderia_thailandensis_2002721723_chromosome_1__complete_sequenc_3402098-3403616_D
rRNA_CP000614_Burkholderia_vietnamiensis_G4_chromosome_1__complete_sequence_30434-31954_DIR-... at +
rRNA_CP000616_Burkholderia_vietnamiensis_G4_chromosome_3__complete_sequence_53235-54755_DIR+... at +
rRNA_CP000614_Burkholderia_vietnamiensis_G4_chromosome_1__complete_sequence_565941-567461_DIR+... at
rRNA_CP000614_Burkholderia_vietnamiensis_G4_chromosome_1__complete_sequence_346867-348387_DIR+... at
rRNA_CP000615_Burkholderia_vietnamiensis_G4_chromosome_2__complete_sequence_270195-271715_DIR-... at
rRNA_CP000614_Burkholderia_vietnamiensis_G4_chromosome_1__complete_sequence_2560260-2561780_DIR-...
Cluster: 648
Bacteria:Actinobacteria:Frankiales:Nakamurellaceae:Nakamurella:Unclassified:Unclassified:Unclassifie
Bacteria:Actinobacteria:Frankiales:Nakamurellaceae:Humicoccus:Unclassified:Unclassified:Unclassified
rRNA_CP001737_Nakamurella_multipartita_DSM_44233_4555023-4556527_DIR-... *
rRNA_CP001737_Nakamurella_multipartita_DSM_44233_4499135-4500639_DIR-... at +/100.00%
Cluster: 434
Bacteria:Firmicutes:Clostridia:Clostridiales:Ruminococcaceae:Incertae_Sedis:Unclassified:Unclassifie
rRNA_CP003992_Clostridium_stercorarium_subsp__stercorarium_DSM_8532_857104-858625_DIR+... *
rRNA_CP003992_Clostridium_stercorarium_subsp__stercorarium_DSM_8532_2306848-2308368_DIR-... at +/100
rRNA_CP003992_Clostridium_stercorarium_subsp__stercorarium_DSM_8532_2957456-2958976_DIR-... at +/99.
Cluster: 430
Bacteria:Actinobacteria:Propionibacteriales:Propionibacteriaceae:Propionibacterium:Unclassified:Uncl
rRNA_CP003493_Propionibacterium_acidipropionici_ATCC_4875_1114381-1115902_DIR+... *
rRNA_CP003493_Propionibacterium_acidipropionici_ATCC_4875_2229325-2230846_DIR-... at +/100.00%
rRNA_CP003493_Propionibacterium_acidipropionici_ATCC_4875_1571321-1572842_DIR+... at +/100.00%
rRNA_CP003493_Propionibacterium_acidipropionici_ATCC_4875_1132579-1134100_DIR+... at +/100.00%
Cluster: 431
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Burkholderiaceae:Cupriavidus:Unclassified
rRNA_CP000352_Cupriavidus_metallidurans_CH34_3616431-3617950_DIR-... at +/97.70%
rRNA_CP000352_Cupriavidus_metallidurans_CH34_3431198-3432717_DIR-... at +/97.70%
rRNA_AM260480_Ralstonia_eutropha_H16_chromosome_2_174908-176427_DIR+... at +/98.22%
rRNA_AM260479_Ralstonia_eutropha_H16_chromosome_1_1806470-1807989_DIR+... at +/98.29%
rRNA_CP000091_Ralstonia_eutropha_JMP134_chromosome_2__complete_sequence_2371015-2372536_DIR+... *
rRNA_CP000090_Ralstonia_eutropha_JMP134_chromosome_1__complete_sequence_3507335-3508856_DIR-... at +
rRNA_CP000091_Ralstonia_eutropha_JMP134_chromosome_2__complete_sequence_180337-181858_DIR+... at +/9
rRNA_CP000090_Ralstonia_eutropha_JMP134_chromosome_1__complete_sequence_1897415-1898936_DIR-... at +
rRNA_CP000090_Ralstonia_eutropha_JMP134_chromosome_1__complete_sequence_3311365-3312886_DIR-... at +
rRNA_CP000091_Ralstonia_eutropha_JMP134_chromosome_2__complete_sequence_2363711-2365232_DIR+... at +
Cluster: 623
Bacteria:Actinobacteria:Catenulisporales:Catenulisporaceae:Catenulispora:Unclassified:Unclassified:U
rRNA_CP001700_Catenulispora_acidiphila_DSM_44928_10101273-10102779_DIR-... *
rRNA_CP001700_Catenulispora_acidiphila_DSM_44928_6297778-6299284_DIR-... at +/100.00%
rRNA_CP001700_Catenulispora_acidiphila_DSM_44928_8817437-8818943_DIR-... at +/100.00%
Cluster: 622
Bacteria:Actinobacteria:Pseudonocardiales:Pseudonocardiaceae:Amycolatopsis:Unclassified:Unclassified
rRNA_CP003729_Amycolatopsis_mediterranei_S699_1303692-1305196_DIR+... at +/97.61%
rRNA_CP003729_Amycolatopsis_mediterranei_S699_6695617-6697121_DIR-... at +/97.54%
rRNA_CP003729_Amycolatopsis_mediterranei_S699_7626784-7628288_DIR-... at +/97.54%
rRNA_CP003729_Amycolatopsis_mediterranei_S699_2316384-2317888_DIR+... at +/97.61%
rRNA_CP003410_Amycolatopsis_orientalis_HCCB10007_1243911-1245417_DIR+... *
rRNA_CP003410_Amycolatopsis_orientalis_HCCB10007_5615321-5616827_DIR-... at +/99.07%
rRNA_CP003410_Amycolatopsis_orientalis_HCCB10007_6528638-6530144_DIR-... at +/99.07%
rRNA_CP003410_Amycolatopsis_orientalis_HCCB10007_1947757-1949263_DIR+... at +/98.81%
Cluster: 621
Bacteria:Actinobacteria:Micromonosporales:Micromonosporaceae:Actinoplanes:Unclassified:Unclassified:
rRNA_CP006272_Actinoplanes_friuliensis_DSM_7358_195254-196760_DIR+... *
rRNA_CP006272_Actinoplanes_friuliensis_DSM_7358_6537868-6539374_DIR-... at +/100.00%
rRNA_CP006272_Actinoplanes_friuliensis_DSM_7358_1647230-1648736_DIR+... at +/100.00%
rRNA_CP002638_Verrucosispora_maris_AB_18_032_2336707-2338209_DIR+... at +/97.01%
rRNA_CP002638_Verrucosispora_maris_AB_18_032_5356057-5357559_DIR-... at +/97.07%
Cluster: 578
Bacteria:Actinobacteria:Micrococcales:Cellulomonadaceae:Cellulomonas:Unclassified:Unclassified:Uncla
rRNA_CP002666_Cellulomonas_fimi_ATCC_484_1832187-1833696_DIR+... *
rRNA_CP002666_Cellulomonas_fimi_ATCC_484_3092601-3094110_DIR-... at +/100.00%
Cluster: 627
Bacteria:Actinobacteria:Corynebacteriales:Nocardiaceae:Nocardia:Unclassified:Unclassified:Unclassifi
rRNA_CP003876_Nocardia_brasiliensis_ATCC_700358_1448264-1449770_DIR+... *
rRNA_CP003876_Nocardia_brasiliensis_ATCC_700358_3902227-3903733_DIR+... at +/100.00%
rRNA_CP003876_Nocardia_brasiliensis_ATCC_700358_2271969-2273475_DIR+... at +/100.00%
rRNA_FO082843_Nocardia_cyriacigeorgica_GUH_2_chromosome_1270353-1271859_DIR+... at +/98.08%
rRNA_FO082843_Nocardia_cyriacigeorgica_GUH_2_chromosome_2683301-2684807_DIR+... at +/98.01%
rRNA_FO082843_Nocardia_cyriacigeorgica_GUH_2_chromosome_2422402-2423908_DIR+... at +/98.01%
rRNA_CP006850_Nocardia_nova_SH22a_1409150-1410654_DIR+... at +/97.21%
rRNA_CP006850_Nocardia_nova_SH22a_7761765-7763269_DIR-... at +/97.21%
rRNA_CP006850_Nocardia_nova_SH22a_2812521-2814025_DIR+... at +/97.21%
Cluster: 468
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Oxalobacteraceae:Unclassified:Unclassifie
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Oxalobacteraceae:Massilia:uncultured_bact
rRNA_HG322949_Janthinobacterium_agaricidamnosum_NBRC_102515___DSM_9628_5915399-5916917_DIR-... *
Cluster: 573
Bacteria:Actinobacteria:Corynebacteriales:Nocardiaceae:Gordonia:Unclassified:Unclassified:Unclassifi
rRNA_CP001802_Gordonia_bronchialis_DSM_43247_2038665-2040175_DIR+... *
rRNA_CP001802_Gordonia_bronchialis_DSM_43247_3021709-3023219_DIR-... at +/99.93%
rRNA_CP003119_Gordonia_polyisoprenivorans_VH2_107427-108937_DIR+... at +/98.15%
rRNA_CP003119_Gordonia_polyisoprenivorans_VH2_2951424-2952933_DIR-... at +/98.15%
rRNA_CP003119_Gordonia_polyisoprenivorans_VH2_2077701-2079211_DIR+... at +/98.08%
Cluster: 572
Bacteria:Actinobacteria:Frankiales:Geodermatophilaceae:Geodermatophilus:Unclassified:Unclassified:Un
rRNA_FO117623_Blastococcus_saxobsidens_DD2_163561-165067_DIR+... at +/97.28%
rRNA_FO117623_Blastococcus_saxobsidens_DD2_3590717-3592223_DIR-... at +/97.28%
rRNA_FO117623_Blastococcus_saxobsidens_DD2_2355506-2357012_DIR+... at +/97.35%
rRNA_CP001867_Geodermatophilus_obscurus_DSM_43160_196075-197585_DIR+... *
rRNA_CP001867_Geodermatophilus_obscurus_DSM_43160_3162370-3163880_DIR-... at +/100.00%
rRNA_CP001867_Geodermatophilus_obscurus_DSM_43160_4146321-4147831_DIR-... at +/100.00%
Cluster: 337
Bacteria:Proteobacteria:Gammaproteobacteria:Pasteurellales:Pasteurellaceae:Haemophilus:uncultured_ba
rRNA_FQ312002_Haemophilus_parainfluenzae_T3T1_438423-439950_DIR-... *
rRNA_FQ312002_Haemophilus_parainfluenzae_T3T1_665423-666950_DIR+... at +/100.00%
rRNA_FQ312002_Haemophilus_parainfluenzae_T3T1_2078750-2080277_DIR-... at +/99.74%
rRNA_FQ312002_Haemophilus_parainfluenzae_T3T1_1396533-1398060_DIR+... at +/100.00%
rRNA_FQ312002_Haemophilus_parainfluenzae_T3T1_825935-827462_DIR+... at +/100.00%
rRNA_FQ312002_Haemophilus_parainfluenzae_T3T1_1775629-1777156_DIR-... at +/99.93%
Cluster: 454
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Burkholderiaceae:Burkholderia:Unclassifie
rRNA_FR687359_Burkholderia_rhizoxinica_HKI_454_271765-273284_DIR+... *
rRNA_FR687359_Burkholderia_rhizoxinica_HKI_454_1091570-1093088_DIR+... at +/100.00%
rRNA_FR687359_Burkholderia_rhizoxinica_HKI_454_925939-927457_DIR+... at +/100.00%
Cluster: 179
Bacteria:Firmicutes:Bacilli:Lactobacillales:Streptococcaceae:Streptococcus:uncultured_bacterium:Uncl
rRNA_CP004409_Streptococcus_oligofermentans_AS_1_3089_16007-17543_DIR+... at +/100.00%
rRNA_CP004409_Streptococcus_oligofermentans_AS_1_3089_1201460-1203000_DIR-... *
rRNA_CP004409_Streptococcus_oligofermentans_AS_1_3089_310251-311791_DIR+... at +/100.00%
rRNA_CP004409_Streptococcus_oligofermentans_AS_1_3089_113992-115532_DIR+... at +/100.00%
rRNA_CP002843_Streptococcus_parasanguinis_ATCC_15912_4661-6196_DIR+... at +/97.01%
rRNA_CP002843_Streptococcus_parasanguinis_ATCC_15912_2062079-2063614_DIR+... at +/97.01%
rRNA_CP002843_Streptococcus_parasanguinis_ATCC_15912_1727460-1728995_DIR+... at +/97.01%
rRNA_CP002843_Streptococcus_parasanguinis_ATCC_15912_1604681-1606216_DIR+... at +/97.01%
Cluster: 486
Bacteria:Bacteroidetes:Sphingobacteriia:Sphingobacteriales:Chitinophagaceae:Niastella:uncultured_bac
rRNA_CP003178_Niastella_koreensis_GR20_10_1184433-1185950_DIR+... *
rRNA_CP003178_Niastella_koreensis_GR20_10_6188984-6190500_DIR-... at +/99.87%
rRNA_CP003178_Niastella_koreensis_GR20_10_6374713-6376229_DIR-... at +/99.87%
Cluster: 253
Bacteria:Proteobacteria:Gammaproteobacteria:Enterobacteriales:Enterobacteriaceae:Escherichia-Shigell
rRNA_FN543502_Citrobacter_rodentium_ICC168_3934006-3935535_DIR-... at +/97.25%
rRNA_FN543502_Citrobacter_rodentium_ICC168_4215538-4217067_DIR-... at +/97.06%
rRNA_FN543502_Citrobacter_rodentium_ICC168_2676388-2677917_DIR-... at +/97.12%
rRNA_FN543502_Citrobacter_rodentium_ICC168_4781714-4783243_DIR+... at +/97.06%
rRNA_CP007025_Escherichia_albertii_KF1_2009668-2011195_DIR-... at +/99.54%
rRNA_CP007025_Escherichia_albertii_KF1_2810773-2812302_DIR+... at +/99.48%
rRNA_CP007025_Escherichia_albertii_KF1_2211879-2213411_DIR-... *
rRNA_CP007025_Escherichia_albertii_KF1_2309141-2310669_DIR-... at +/99.61%
rRNA_CP007025_Escherichia_albertii_KF1_1280831-1282360_DIR-... at +/99.61%
rRNA_CP007025_Escherichia_albertii_KF1_3563063-3564593_DIR+... at +/99.67%
rRNA_CP007025_Escherichia_albertii_KF1_2051100-2052629_DIR-... at +/99.61%
rRNA_CP009166_Escherichia_coli_1303_3624625-3626154_DIR-... at +/99.08%
rRNA_CP009166_Escherichia_coli_1303_2920597-2922126_DIR-... at +/99.22%
rRNA_CU928158_Escherichia_fergusonii_ATCC_35469_chromosome_3879837-3881366_DIR-... at +/99.02%
rRNA_FR877557_Salmonella_bongori_NCTC_12419__culture_collection_SGSC_SARC11_3301816-3303345_DIR-...
rRNA_FR877557_Salmonella_bongori_NCTC_12419__culture_collection_SGSC_SARC11_3998152-3999681_DIR+...
rRNA_FR877557_Salmonella_bongori_NCTC_12419__culture_collection_SGSC_SARC11_3875796-3877325_DIR+...
rRNA_FR877557_Salmonella_bongori_NCTC_12419__culture_collection_SGSC_SARC11_2604398-2605927_DIR-...
rRNA_FR877557_Salmonella_bongori_NCTC_12419__culture_collection_SGSC_SARC11_3783295-3784824_DIR+...
rRNA_FR877557_Salmonella_bongori_NCTC_12419__culture_collection_SGSC_SARC11_4039320-4040849_DIR+...
rRNA_CP000036_Shigella_boydii_Sb227_3275509-3277038_DIR-... at +/98.95%
rRNA_CP000036_Shigella_boydii_Sb227_209754-211283_DIR+... at +/98.95%
rRNA_CP000036_Shigella_boydii_Sb227_4025247-4026776_DIR+... at +/98.95%
rRNA_CP000036_Shigella_boydii_Sb227_3888812-3890341_DIR+... at +/98.95%
rRNA_CP000036_Shigella_boydii_Sb227_2629318-2630847_DIR-... at +/98.95%
rRNA_CP000036_Shigella_boydii_Sb227_4066557-4068086_DIR+... at +/98.95%
rRNA_HE616528_Shigella_sonnei_53G_main_chromosome_3008288-3009817_DIR-... at +/98.76%
Cluster: 257
Bacteria:Actinobacteria:Corynebacteriales:uncultured:Unclassified:Unclassified:Unclassified:Unclassi
rRNA_FR878060_Mycobacterium_africanum_GM041182_1474822-1476341_DIR+... at +/98.03%
rRNA_CP009493_Mycobacterium_avium_subsp__avium_2285__R_1383477-1384997_DIR+... at +/97.90%
rRNA_AM408590_Mycobacterium_bovis_BCG_Pasteur_1173P2_1498370-1499889_DIR+... at +/98.03%
rRNA_HE572590_Mycobacterium_canettii_CIPT_140010059_1494867-1496386_DIR+... at +/98.03%
rRNA_CP002275_Mycobacterium_indicus_pranii_MTCC_9506_1565247-1566765_DIR+... at +/97.76%
rRNA_CP009499_Mycobacterium_intracellulare_1956_1542930-1544448_DIR+... at +/97.76%
rRNA_CP006835_Mycobacterium_kansasii_ATCC_12478_1414945-1416463_DIR-... at +/97.96%
rRNA_FM211192_Mycobacterium_leprae_Br4923_sequence_1341193-1342725_DIR+... *
rRNA_CP003899_Mycobacterium_liflandii_128FXT_4639775-4641293_DIR-... at +/97.76%
rRNA_CP000854_Mycobacterium_marinum_M_5033929-5035447_DIR-... at +/97.96%
rRNA_CP005082_Mycobacterium_tuberculosis_str__Beijing_NITR203_1471727-1473246_DIR+... at +/98.03%
rRNA_CP000325_Mycobacterium_ulcerans_Agy99_4413409-4414930_DIR-... at +/97.63%
rRNA_CP003347_Mycobacterium_sp__05_1390_1405586-1407104_DIR+... at +/97.70%
Cluster: 254
Bacteria:Proteobacteria:Gammaproteobacteria:Xanthomonadales:Xanthomonadaceae:Rhodanobacter:unculture
rRNA_CP003350_Frateuria_aurantia_DSM_6220_44112-45644_DIR+... *
rRNA_CP003350_Frateuria_aurantia_DSM_6220_2975215-2976747_DIR-... at +/100.00%
rRNA_CP003350_Frateuria_aurantia_DSM_6220_574435-575967_DIR+... at +/100.00%
rRNA_CP003350_Frateuria_aurantia_DSM_6220_52744-54276_DIR+... at +/100.00%
Cluster: 594
Bacteria:Actinobacteria:Micrococcales:Microbacteriaceae:Cryobacterium:Unclassified:Unclassified:Uncl
rRNA_AM849034_Clavibacter_michiganensis_subsp__sepedonicus_1297191-1298699_DIR+... *
rRNA_AM849034_Clavibacter_michiganensis_subsp__sepedonicus_2742890-2744398_DIR-... at +/99.87%
Cluster: 854
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Hyphomicrobiaceae:Hyphomicrobium:Unclassifie
rRNA_CP005587_Hyphomicrobium_denitrificans_1NES1_3791992-3793460_DIR+... *
Cluster: 856
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Hyphomicrobiaceae:Rhodomicrobium:uncultured_
rRNA_CP002292_Rhodomicrobium_vannielii_ATCC_17100_2384257-2385725_DIR-... *
rRNA_CP002292_Rhodomicrobium_vannielii_ATCC_17100_1678465-1679933_DIR-... at +/99.93%
Cluster: 850
Bacteria:Proteobacteria:Alphaproteobacteria:Caulobacterales:Caulobacteraceae:uncultured:Unclassified
Bacteria:Proteobacteria:Alphaproteobacteria:Caulobacterales:Caulobacteraceae:Phenylobacterium:Unclas
rRNA_CP000747_Phenylobacterium_zucineum_HLK1_1272392-1273861_DIR+... *
Cluster: 852
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Rhizobiaceae:Rhizobium:Unclassified:Unclassi
rRNA_CP000628_Agrobacterium_radiobacter_K84_chromosome_1__complete_sequence_67156-68624_DIR+... *
rRNA_CP000628_Agrobacterium_radiobacter_K84_chromosome_1__complete_sequence_3293455-3294923_DIR-...
rRNA_CP000628_Agrobacterium_radiobacter_K84_chromosome_1__complete_sequence_201002-202470_DIR+... at
rRNA_CP007641_Rhizobium_etli_bv__phaseoli_str__IE4803_65392-66860_DIR+... at +/98.09%
rRNA_CP007641_Rhizobium_etli_bv__phaseoli_str__IE4803_3752565-3754033_DIR-... at +/98.09%
rRNA_CP007641_Rhizobium_etli_bv__phaseoli_str__IE4803_4180968-4182436_DIR-... at +/98.09%
rRNA_CP006877_Rhizobium_gallicum_bv__gallicum_R602_3719003-3720471_DIR-... at +/97.00%
rRNA_CP001191_Rhizobium_leguminosarum_bv__trifolii_WSM2304_4146706-4148174_DIR+... at +/98.37%
rRNA_CP001191_Rhizobium_leguminosarum_bv__trifolii_WSM2304_3226724-3228192_DIR-... at +/98.37%
rRNA_CP001191_Rhizobium_leguminosarum_bv__trifolii_WSM2304_3644008-3645476_DIR-... at +/98.37%
rRNA_CP004015_Rhizobium_tropici_CIAT_899_69024-70492_DIR+... at +/99.46%
rRNA_CP004015_Rhizobium_tropici_CIAT_899_3254422-3255890_DIR-... at +/99.46%
rRNA_CP004015_Rhizobium_tropici_CIAT_899_171661-173129_DIR+... at +/99.46%
Cluster: 406
Bacteria:Firmicutes:Bacilli:Bacillales:Paenibacillaceae:Brevibacillus:Unclassified:Unclassified
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_353256-354779_DIR+... *
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_2171640-2173163_DIR+... at +/99.48%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_146044-147567_DIR+... at +/99.87%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_534870-536393_DIR+... at +/99.74%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_876188-877711_DIR+... at +/99.74%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_21476-22999_DIR+... at +/99.48%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_5577434-5578957_DIR-... at +/99.54%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_4841886-4843409_DIR-... at +/99.74%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_4344228-4345751_DIR-... at +/99.48%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_540070-541593_DIR+... at +/99.48%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_191809-193332_DIR+... at +/99.67%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_9494-11017_DIR+... at +/99.48%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_1105812-1107335_DIR+... at +/99.74%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_5317765-5319288_DIR-... at +/99.41%
rRNA_AP008955_Brevibacillus_brevis_NBRC_100599_DNA_260458-261981_DIR+... at +/100.00%
Cluster: 182
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Unclassified:Unclassified:Unclassified
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Bacillus:Unclassified:Unclassified
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2331176-2332715_DIR+... *
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2719391-2720930_DIR+... at +/99.94%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2156305-2157844_DIR+... at +/99.74%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2366955-2368494_DIR+... at +/99.81%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2535870-2537409_DIR+... at +/99.87%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2150370-2151909_DIR+... at +/99.81%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_5044824-5046363_DIR-... at +/99.81%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2372009-2373548_DIR+... at +/99.87%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2210703-2212242_DIR+... at +/99.94%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2129701-2131240_DIR+... at +/99.94%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2577529-2579068_DIR+... at +/99.81%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_1757050-1758589_DIR-... at +/99.94%
rRNA_CP009920_Bacillus_megaterium_NBRC_15308___ATCC_14581_2274617-2276156_DIR+... at +/99.87%
Cluster: 183
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Bacillus:Unclassified:Unclassified
rRNA_CP001878_Bacillus_pseudofirmus_OF4_337674-339213_DIR+... *
rRNA_CP001878_Bacillus_pseudofirmus_OF4_11550-13089_DIR+... at +/100.00%
rRNA_CP001878_Bacillus_pseudofirmus_OF4_164658-166197_DIR+... at +/99.87%
rRNA_CP001878_Bacillus_pseudofirmus_OF4_97249-98788_DIR+... at +/99.94%
rRNA_CP001878_Bacillus_pseudofirmus_OF4_616333-617872_DIR+... at +/99.94%
rRNA_CP001878_Bacillus_pseudofirmus_OF4_34951-36490_DIR+... at +/100.00%
rRNA_CP001878_Bacillus_pseudofirmus_OF4_256861-258400_DIR+... at +/100.00%
Cluster: 655
Bacteria:Actinobacteria:Micromonosporales:Micromonosporaceae:Actinoplanes:Unclassified:Unclassified:
rRNA_AP012319_Actinoplanes_missouriensis_431_DNA_4544025-4545528_DIR-... *
rRNA_AP012319_Actinoplanes_missouriensis_431_DNA_167812-169314_DIR+... at +/99.80%
rRNA_AP012319_Actinoplanes_missouriensis_431_DNA_3864130-3865632_DIR+... at +/99.80%
rRNA_AP012319_Actinoplanes_missouriensis_431_DNA_1197218-1198720_DIR+... at +/99.80%
rRNA_AP012319_Actinoplanes_missouriensis_431_DNA_495140-496642_DIR+... at +/99.80%
rRNA_AP012319_Actinoplanes_missouriensis_431_DNA_6566516-6568018_DIR-... at +/99.80%
rRNA_CP002638_Verrucosispora_maris_AB_18_032_6427796-6429298_DIR-... at +/97.14%
Cluster: 507
Bacteria:Firmicutes:Clostridia:Clostridiales:Family_XI_Incertae_Sedis:Anaerococcus:uncultured_Anaero
rRNA_CP001708_Anaerococcus_prevotii_DSM_20548_81697-83211_DIR+... at +/99.34%
rRNA_CP001708_Anaerococcus_prevotii_DSM_20548_1430943-1432457_DIR-... at +/99.14%
rRNA_CP001708_Anaerococcus_prevotii_DSM_20548_643497-645010_DIR+... at +/99.01%
rRNA_CP001708_Anaerococcus_prevotii_DSM_20548_235850-237365_DIR+... *
Cluster: 189
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Bacillus:Bacillus_gibsonii:Unclassified
rRNA_AP006627_Bacillus_clausii_KSM_K16_DNA_933645-935181_DIR+... at +/99.09%
rRNA_AP006627_Bacillus_clausii_KSM_K16_DNA_11682-13220_DIR+... *
rRNA_AP006627_Bacillus_clausii_KSM_K16_DNA_142946-144482_DIR+... at +/99.02%
rRNA_AP006627_Bacillus_clausii_KSM_K16_DNA_136414-137950_DIR+... at +/98.96%
rRNA_AP006627_Bacillus_clausii_KSM_K16_DNA_1440588-1442124_DIR+... at +/99.02%
rRNA_AP006627_Bacillus_clausii_KSM_K16_DNA_52371-53909_DIR+... at +/99.87%
rRNA_AP006627_Bacillus_clausii_KSM_K16_DNA_218082-219618_DIR+... at +/99.02%
Cluster: 659
Bacteria:Bacteroidetes:Flavobacteria:Flavobacteriales:Flavobacteriaceae:Flavobacterium:uncultured_ba
Bacteria:Bacteroidetes:Flavobacteria:Flavobacteriales:Flavobacteriaceae:Flavobacterium:uncultured_ba
rRNA_CP003222_Flavobacterium_columnare_ATCC_49512_159980-161483_DIR+... *
rRNA_CP003222_Flavobacterium_columnare_ATCC_49512_1801869-1803372_DIR-... at +/100.00%
rRNA_CP003222_Flavobacterium_columnare_ATCC_49512_821980-823483_DIR+... at +/100.00%
rRNA_CP003222_Flavobacterium_columnare_ATCC_49512_165579-167082_DIR+... at +/100.00%
rRNA_CP003222_Flavobacterium_columnare_ATCC_49512_1796269-1797772_DIR-... at +/100.00%
Cluster: 752
Bacteria:Acidobacteria:Acidobacteriales:Acidobacteriaceae:Terriglobus:Unclassified:Unclassified:Uncl
rRNA_CP003379_Terriglobus_roseus_DSM_18391_924361-925850_DIR+... *
rRNA_CP003379_Terriglobus_roseus_DSM_18391_2074463-2075952_DIR+... at +/100.00%
rRNA_CP002467_Terriglobus_saanensis_SP1PR4_3872526-3874013_DIR-... at +/97.51%
Cluster: 633
Bacteria:Actinobacteria:Pseudonocardiales:Pseudonocardiaceae:Lentzea:Unclassified:Unclassified:Uncla
Bacteria:Actinobacteria:Pseudonocardiales:Pseudonocardiaceae:Actinokineospora:Unclassified:Unclassif
rRNA_CP001630_Actinosynnema_mirum_DSM_43827_219650-221154_DIR+... at +/99.93%
rRNA_CP001630_Actinosynnema_mirum_DSM_43827_6468349-6469854_DIR-... *
rRNA_CP001630_Actinosynnema_mirum_DSM_43827_1686555-1688059_DIR+... at +/100.00%
rRNA_CP001630_Actinosynnema_mirum_DSM_43827_1008774-1010278_DIR+... at +/100.00%
rRNA_CP001630_Actinosynnema_mirum_DSM_43827_6129696-6131200_DIR-... at +/99.93%
rRNA_HE804045_Saccharothrix_espanaensis_DSM_44229_1012089-1013592_DIR+... at +/97.34%
rRNA_HE804045_Saccharothrix_espanaensis_DSM_44229_6951818-6953321_DIR-... at +/97.34%
rRNA_HE804045_Saccharothrix_espanaensis_DSM_44229_7324119-7325622_DIR-... at +/97.34%
rRNA_HE804045_Saccharothrix_espanaensis_DSM_44229_1873058-1874562_DIR+... at +/97.14%
Cluster: 469
Bacteria:Actinobacteria:Micrococcales:Micrococcaceae:uncultured:uncultured_bacterium:Unclassified:Un
Bacteria:Actinobacteria:Micrococcales:Micrococcaceae:Kocuria:Unclassified:Unclassified:Unclassified
rRNA_AP009152_Kocuria_rhizophila_DC2201_DNA_2406724-2408242_DIR-... *
rRNA_AP009152_Kocuria_rhizophila_DC2201_DNA_1752310-1753828_DIR-... at +/100.00%
rRNA_AP009152_Kocuria_rhizophila_DC2201_DNA_2127431-2128949_DIR-... at +/100.00%
Cluster: 635
Bacteria:Actinobacteria:Propionibacteriales:Nocardioidaceae:Kribbella:Unclassified:Unclassified:Uncl
rRNA_CP001736_Kribbella_flavida_DSM_17836_5854415-5855920_DIR-... *
rRNA_CP001736_Kribbella_flavida_DSM_17836_5047861-5049365_DIR-... at +/99.73%
Cluster: 755
Bacteria:Acidobacteria:Candidatus_Solibacter:uncultured_bacterium:Unclassified:Unclassified:Unclassi
Bacteria:Acidobacteria:Candidatus_Solibacter:uncultured_bacterium:Unclassified:Unclassified:Unclassi
rRNA_CP000473_Solibacter_usitatus_Ellin6076_1248105-1249593_DIR+... *
rRNA_CP000473_Solibacter_usitatus_Ellin6076_1969439-1970927_DIR+... at +/100.00%
Cluster: 465
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Oxalobacteraceae:uncultured:Unclassified:
rRNA_CP002745_Collimonas_fungivorans_Ter331_829197-830715_DIR+... *
rRNA_CP002745_Collimonas_fungivorans_Ter331_4446113-4447631_DIR-... at +/100.00%
rRNA_CP002745_Collimonas_fungivorans_Ter331_4697750-4699268_DIR-... at +/100.00%
Cluster: 563
Bacteria:Actinobacteria:Pseudonocardiales:Pseudonocardiaceae:Saccharomonospora:Unclassified:Unclassi
rRNA_CP001683_Saccharomonospora_viridis_DSM_43017_564234-565745_DIR+... *
rRNA_CP001683_Saccharomonospora_viridis_DSM_43017_2748399-2749910_DIR-... at +/100.00%
rRNA_CP001683_Saccharomonospora_viridis_DSM_43017_767236-768747_DIR+... at +/100.00%
Cluster: 565
Bacteria:Actinobacteria:Micrococcales:Sanguibacteraceae:Sanguibacter:Unclassified:Unclassified:Uncla
rRNA_CP001819_Sanguibacter_keddieii_DSM_10542_791913-793424_DIR+... *
rRNA_CP001819_Sanguibacter_keddieii_DSM_10542_2474593-2476104_DIR-... at +/99.87%
rRNA_CP001819_Sanguibacter_keddieii_DSM_10542_4147554-4149065_DIR-... at +/99.87%
rRNA_CP001819_Sanguibacter_keddieii_DSM_10542_1230090-1231601_DIR+... at +/99.93%
Cluster: 566
Bacteria:Firmicutes:Clostridia:Thermoanaerobacterales:Family_III_Incertae_Sedis:Tepidanaerobacter:un
rRNA_HF563609_Tepidanaerobacter_acetatoxydans_Re1_250208-251719_DIR+... *
rRNA_HF563609_Tepidanaerobacter_acetatoxydans_Re1_1217655-1219166_DIR+... at +/99.47%
Cluster: 91
Bacteria:Firmicutes:Clostridia:Clostridiales:Peptococcaceae:Unclassified:Unclassified:Unclassified
rRNA_CP002547_Syntrophobotulus_glycolicus_DSM_8271_239229-240782_DIR+... *
rRNA_CP002547_Syntrophobotulus_glycolicus_DSM_8271_2164818-2166371_DIR-... at +/100.00%
rRNA_CP002547_Syntrophobotulus_glycolicus_DSM_8271_2254576-2256128_DIR-... at +/99.48%
rRNA_CP002547_Syntrophobotulus_glycolicus_DSM_8271_286007-287560_DIR+... at +/100.00%
Cluster: 165
Bacteria:Firmicutes:Bacilli:Bacillales:Bacillaceae:Bacillus:Unclassified:Unclassified
rRNA_CP002091_Bacillus_anthracis_str__H9401_267258-268797_DIR+... at +/99.55%
rRNA_CP002091_Bacillus_anthracis_str__H9401_82431-83970_DIR+... at +/99.48%
rRNA_CP002091_Bacillus_anthracis_str__H9401_280557-282096_DIR+... at +/99.48%
rRNA_CP002091_Bacillus_anthracis_str__H9401_732591-734130_DIR+... at +/99.42%
rRNA_CP002091_Bacillus_anthracis_str__H9401_29109-30648_DIR+... at +/99.48%
rRNA_CP002091_Bacillus_anthracis_str__H9401_523452-524991_DIR+... at +/99.42%
rRNA_CP002091_Bacillus_anthracis_str__H9401_145495-147034_DIR+... at +/99.29%
rRNA_CP002091_Bacillus_anthracis_str__H9401_9315-10854_DIR+... at +/99.48%
rRNA_CP002091_Bacillus_anthracis_str__H9401_4646563-4648102_DIR-... at +/99.42%
rRNA_CP002091_Bacillus_anthracis_str__H9401_246679-248218_DIR+... at +/99.48%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_147504-149043_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_5227062-5228601_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_117685-119224_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_361949-363488_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_5154435-5155974_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_110415-111954_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_5290280-5291819_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_567604-569143_DIR+... at +/99.61%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_128095-129634_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_89841-91380_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_5174003-5175542_DIR+... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_4561167-4562706_DIR-... at +/99.55%
rRNA_CP007512_Bacillus_bombysepticus_str__Wang_140354-141893_DIR+... at +/99.61%
rRNA_CP009590_Bacillus_cereus_G9241_2223860-2225399_DIR-... at +/99.48%
rRNA_CP009590_Bacillus_cereus_G9241_1964190-1965729_DIR-... at +/99.42%
rRNA_CP009590_Bacillus_cereus_G9241_2447547-2449086_DIR-... at +/99.48%
rRNA_CP009590_Bacillus_cereus_G9241_2203335-2204874_DIR-... at +/99.55%
rRNA_CP009590_Bacillus_cereus_G9241_2183603-2185142_DIR-... at +/99.55%
rRNA_CP009590_Bacillus_cereus_G9241_2467321-2468860_DIR-... at +/99.48%
rRNA_CP009590_Bacillus_cereus_G9241_1731484-1733023_DIR-... at +/99.48%
rRNA_CP009590_Bacillus_cereus_G9241_2196146-2197685_DIR-... at +/99.55%
rRNA_CP009590_Bacillus_cereus_G9241_2388333-2389872_DIR-... at +/99.35%
rRNA_CP009590_Bacillus_cereus_G9241_3030700-3032239_DIR+... at +/99.48%
rRNA_CP009590_Bacillus_cereus_G9241_2175037-2176576_DIR-... at +/99.48%
rRNA_CP009590_Bacillus_cereus_G9241_2394046-2395585_DIR-... at +/99.22%
rRNA_CP009590_Bacillus_cereus_G9241_2325259-2326798_DIR-... at +/99.55%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_256593-258131_DIR+... at +/97.86%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_515522-517060_DIR+... at +/97.60%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_82758-84296_DIR+... at +/97.79%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_277345-278883_DIR+... at +/97.73%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_295269-296807_DIR+... at +/97.86%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_29256-30794_DIR+... at +/97.73%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_691784-693322_DIR+... at +/97.79%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_285014-286552_DIR+... at +/97.79%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_88601-90139_DIR+... at +/97.79%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_9424-10962_DIR+... at +/97.79%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_302785-304323_DIR+... at +/97.79%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_3575252-3576790_DIR-... at +/97.53%
rRNA_CP000764_Bacillus_cytotoxicus_NVH_391_98_151867-153405_DIR+... at +/97.79%
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_247184-248722_DIR+... at +/99.55
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_5643341-5644879_DIR+... at +/99.
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_209026-210567_DIR+... *
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_463436-464975_DIR+... at +/99.55
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_940320-941858_DIR+... at +/99.48
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_148976-150515_DIR+... at +/99.61
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_5696624-5698163_DIR+... at +/99.
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_4916207-4917746_DIR-... at +/99.
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_670414-671953_DIR+... at +/99.55
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_216297-217836_DIR+... at +/99.61
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_58653-60192_DIR+... at +/99.48%
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_5623601-5625140_DIR+... at +/99.
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_240033-241572_DIR+... at +/99.48
rRNA_CP010089_Bacillus_thuringiensis_serovar_galleriae_strain_HD_29_226717-228256_DIR+... at +/99.61
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2882139-2883678_DIR+... at +/99.35%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_3351651-3353190_DIR+... at +/99.35%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2704279-2705817_DIR+... at +/99.35%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2895490-2897029_DIR+... at +/99.35%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2913227-2914766_DIR+... at +/99.35%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2650835-2652374_DIR+... at +/99.35%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2068715-2070254_DIR-... at +/99.29%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2902704-2904243_DIR+... at +/99.35%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2767375-2768914_DIR+... at +/99.29%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2631028-2632567_DIR+... at +/99.35%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_3137586-3139125_DIR+... at +/99.29%
rRNA_CP006863_Bacillus_toyonensis_BCT_7112_2859793-2861332_DIR+... at +/99.35%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_247808-249347_DIR+... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_307053-308592_DIR+... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_82288-83827_DIR+... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_268373-269912_DIR+... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_288925-290464_DIR+... at +/99.09%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_28861-30400_DIR+... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_515954-517493_DIR+... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_4698646-4700185_DIR-... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_275634-277173_DIR+... at +/99.09%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_88000-89539_DIR+... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_9027-10566_DIR+... at +/99.03%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_299789-301328_DIR+... at +/99.16%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_728333-729872_DIR+... at +/98.90%
rRNA_CP000903_Bacillus_weihenstephanensis_KBAB4_151105-152644_DIR+... at +/99.16%
Cluster: 93
Bacteria:Firmicutes:Clostridia:Clostridiales:Family_XVIII_Incertae_Sedis:Symbiobacterium:Unclassifie
rRNA_AP006840_Symbiobacterium_thermophilum_IAM_14863_DNA_2954643-2956195_DIR-... *
rRNA_AP006840_Symbiobacterium_thermophilum_IAM_14863_DNA_288174-289726_DIR+... at +/99.81%
rRNA_AP006840_Symbiobacterium_thermophilum_IAM_14863_DNA_21153-22705_DIR+... at +/99.94%
rRNA_AP006840_Symbiobacterium_thermophilum_IAM_14863_DNA_842824-844376_DIR+... at +/99.81%
rRNA_AP006840_Symbiobacterium_thermophilum_IAM_14863_DNA_294633-296185_DIR+... at +/99.94%
rRNA_AP006840_Symbiobacterium_thermophilum_IAM_14863_DNA_3468131-3469683_DIR-... at +/99.87%
Cluster: 703
Bacteria:Spirochaetes:Spirochaetales:Leptospiraceae:Leptospira:Unclassified:Unclassified:Unclassifie
rRNA_CP000348_Leptospira_borgpetersenii_serovar_Hardjo_bovis_L550_chromosome_1__co_1699000-1700498_D
rRNA_CP000348_Leptospira_borgpetersenii_serovar_Hardjo_bovis_L550_chromosome_1__co_2626139-2627635_D
rRNA_AE016823_Leptospira_interrogans_serovar_Copenhageni_str__Fiocruz_L1_130__chro_1230546-1232041_D
rRNA_AE016823_Leptospira_interrogans_serovar_Copenhageni_str__Fiocruz_L1_130__chro_1862440-1863936_D
Cluster: 221
Bacteria:Proteobacteria:Gammaproteobacteria:Enterobacteriales:Enterobacteriaceae:Kluyvera:Unclassifi
rRNA_CP007557_Citrobacter_freundii_CFNIH1_5027734-5029261_DIR-... at +/98.17%
rRNA_CP007557_Citrobacter_freundii_CFNIH1_1572775-1574302_DIR+... at +/98.17%
rRNA_CP007557_Citrobacter_freundii_CFNIH1_839204-840731_DIR-... at +/97.97%
rRNA_CP007557_Citrobacter_freundii_CFNIH1_1530743-1532270_DIR+... at +/98.17%
rRNA_CP007557_Citrobacter_freundii_CFNIH1_744885-746412_DIR-... at +/98.23%
rRNA_CP007557_Citrobacter_freundii_CFNIH1_1715553-1717080_DIR+... at +/97.97%
rRNA_CP007557_Citrobacter_freundii_CFNIH1_1400286-1401813_DIR+... at +/98.04%
rRNA_CP007557_Citrobacter_freundii_CFNIH1_2231645-2233172_DIR+... at +/97.97%
rRNA_CP000822_Citrobacter_koseri_ATCC_BAA_895_2799399-2800928_DIR-... at +/97.52%
rRNA_CP000822_Citrobacter_koseri_ATCC_BAA_895_93802-95331_DIR+... at +/97.52%
rRNA_CP000822_Citrobacter_koseri_ATCC_BAA_895_3645040-3646569_DIR-... at +/97.52%
rRNA_CP000822_Citrobacter_koseri_ATCC_BAA_895_4325578-4327107_DIR-... at +/97.45%
rRNA_CP000822_Citrobacter_koseri_ATCC_BAA_895_2761181-2762710_DIR-... at +/97.52%
rRNA_CP000822_Citrobacter_koseri_ATCC_BAA_895_183765-185294_DIR+... at +/97.45%
rRNA_CP000822_Citrobacter_koseri_ATCC_BAA_895_2929978-2931507_DIR-... at +/97.65%
rRNA_FN543502_Citrobacter_rodentium_ICC168_247923-249452_DIR+... at +/97.25%
rRNA_FN543502_Citrobacter_rodentium_ICC168_4122130-4123659_DIR-... at +/97.45%
rRNA_FN543502_Citrobacter_rodentium_ICC168_3975308-3976837_DIR-... at +/97.39%
rRNA_CP004091_Cronobacter_sakazakii_SP291_3612787-3614315_DIR-... at +/97.06%
rRNA_CP004091_Cronobacter_sakazakii_SP291_24913-26442_DIR+... at +/97.45%
rRNA_CP004091_Cronobacter_sakazakii_SP291_3747100-3748629_DIR-... at +/97.39%
rRNA_CP004091_Cronobacter_sakazakii_SP291_3992543-3994072_DIR+... at +/97.58%
rRNA_CP004091_Cronobacter_sakazakii_SP291_3044854-3046383_DIR-... at +/97.45%
rRNA_CP004091_Cronobacter_sakazakii_SP291_682783-684311_DIR+... at +/97.51%
rRNA_CP004091_Cronobacter_sakazakii_SP291_3653001-3654530_DIR-... at +/97.52%
rRNA_CP002824_Enterobacter_aerogenes_KCTC_2190_2536987-2538514_DIR+... at +/97.91%
rRNA_CP002824_Enterobacter_aerogenes_KCTC_2190_1693669-1695196_DIR+... at +/97.91%
rRNA_CP002824_Enterobacter_aerogenes_KCTC_2190_996125-997653_DIR-... at +/97.91%
rRNA_CP002824_Enterobacter_aerogenes_KCTC_2190_1604526-1606053_DIR+... at +/97.91%
rRNA_CP002824_Enterobacter_aerogenes_KCTC_2190_220104-221631_DIR-... at +/97.97%
rRNA_CP002824_Enterobacter_aerogenes_KCTC_2190_1738704-1740231_DIR+... at +/97.77%
rRNA_CP002824_Enterobacter_aerogenes_KCTC_2190_1512361-1513888_DIR+... at +/97.97%
rRNA_CP002824_Enterobacter_aerogenes_KCTC_2190_2128402-2129929_DIR+... at +/97.97%
rRNA_CP003026_Enterobacter_asburiae_LF7a_4285323-4286850_DIR-... at +/98.10%
rRNA_CP003026_Enterobacter_asburiae_LF7a_257230-258757_DIR+... at +/98.04%
rRNA_CP003026_Enterobacter_asburiae_LF7a_4624193-4625719_DIR-... at +/98.10%
rRNA_CP003026_Enterobacter_asburiae_LF7a_4749056-4750583_DIR-... at +/98.10%
rRNA_CP003026_Enterobacter_asburiae_LF7a_3542582-3544109_DIR-... at +/98.04%
rRNA_CP003026_Enterobacter_asburiae_LF7a_865115-866642_DIR+... at +/98.10%
rRNA_CP003026_Enterobacter_asburiae_LF7a_4531152-4532679_DIR-... at +/98.10%
rRNA_CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047_5066251-5067778_DIR-... at +/99.87%
rRNA_CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047_1015765-1017292_DIR+... at +/100.00%
rRNA_CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047_4788532-4790059_DIR-... at +/100.00%
rRNA_CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047_380930-382459_DIR+... at +/99.67%
rRNA_CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047_4022291-4023818_DIR-... at +/99.93%
rRNA_CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047_5269665-5271192_DIR-... at +/100.00%
rRNA_CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047_265444-266974_DIR+... at +/99.74%
rRNA_CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047_5152786-5154321_DIR-... *
rRNA_CP002272_Enterobacter_lignolyticus_SCF1_4480465-4481992_DIR-... at +/97.77%
rRNA_CP002272_Enterobacter_lignolyticus_SCF1_448966-450494_DIR+... at +/97.71%
rRNA_CP002272_Enterobacter_lignolyticus_SCF1_4624500-4626027_DIR-... at +/97.58%
rRNA_CP002272_Enterobacter_lignolyticus_SCF1_4758193-4759721_DIR-... at +/97.65%
rRNA_CP002272_Enterobacter_lignolyticus_SCF1_3787696-3789223_DIR-... at +/97.51%
rRNA_CP002272_Enterobacter_lignolyticus_SCF1_1199254-1200781_DIR+... at +/97.64%
rRNA_CP002272_Enterobacter_lignolyticus_SCF1_4525723-4527249_DIR-... at +/97.51%
rRNA_CU468135_Erwinia_tasmaniensis_strain_ET1_99_complete_chromosome_3504763-3506290_DIR-... at +/97
rRNA_CU468135_Erwinia_tasmaniensis_strain_ET1_99_complete_chromosome_31992-33519_DIR+... at +/97.25%
rRNA_CU468135_Erwinia_tasmaniensis_strain_ET1_99_complete_chromosome_297818-299345_DIR+... at +/97.2
rRNA_CU468135_Erwinia_tasmaniensis_strain_ET1_99_complete_chromosome_211259-212786_DIR+... at +/97.2
rRNA_CU468135_Erwinia_tasmaniensis_strain_ET1_99_complete_chromosome_2945316-2946843_DIR-... at +/97
rRNA_CU468135_Erwinia_tasmaniensis_strain_ET1_99_complete_chromosome_163596-165123_DIR+... at +/97.2
rRNA_CU468135_Erwinia_tasmaniensis_strain_ET1_99_complete_chromosome_1028983-1030510_DIR+... at +/97
rRNA_CP009166_Escherichia_coli_1303_225863-227392_DIR+... at +/97.58%
rRNA_CP009166_Escherichia_coli_1303_4448039-4449568_DIR+... at +/97.19%
rRNA_CP009166_Escherichia_coli_1303_4316144-4317673_DIR+... at +/97.19%
rRNA_CP009166_Escherichia_coli_1303_4222430-4223959_DIR+... at +/97.19%
rRNA_CP009166_Escherichia_coli_1303_4489527-4491056_DIR+... at +/97.32%
rRNA_CU928158_Escherichia_fergusonii_ATCC_35469_chromosome_3715822-3717351_DIR-... at +/97.32%
rRNA_CU928158_Escherichia_fergusonii_ATCC_35469_chromosome_245197-246726_DIR+... at +/97.06%
rRNA_CU928158_Escherichia_fergusonii_ATCC_35469_chromosome_4161348-4162877_DIR+... at +/97.32%
rRNA_CU928158_Escherichia_fergusonii_ATCC_35469_chromosome_3343319-3344848_DIR-... at +/97.32%
rRNA_CU928158_Escherichia_fergusonii_ATCC_35469_chromosome_481840-483369_DIR+... at +/97.12%
rRNA_CU928158_Escherichia_fergusonii_ATCC_35469_chromosome_3839532-3841061_DIR-... at +/97.32%
rRNA_CP003683_Klebsiella_oxytoca_E718_6087356-6088883_DIR+... at +/98.30%
rRNA_CP003683_Klebsiella_oxytoca_E718_276758-278285_DIR+... at +/98.30%
rRNA_CP003683_Klebsiella_oxytoca_E718_5535336-5536863_DIR-... at +/98.30%
rRNA_CP003683_Klebsiella_oxytoca_E718_231647-233174_DIR+... at +/98.36%
rRNA_CP003683_Klebsiella_oxytoca_E718_4683185-4684712_DIR-... at +/98.23%
rRNA_CP003683_Klebsiella_oxytoca_E718_673325-674852_DIR+... at +/98.23%
rRNA_CP003683_Klebsiella_oxytoca_E718_130004-131531_DIR+... at +/98.30%
rRNA_CP003683_Klebsiella_oxytoca_E718_1105593-1107120_DIR+... at +/98.30%
rRNA_CP006923_Klebsiella_pneumoniae_30660_NJST258_1_4969140-4970667_DIR-... at +/98.82%
rRNA_CP006923_Klebsiella_pneumoniae_30660_NJST258_1_5211190-5212716_DIR-... at +/98.89%
rRNA_CP006923_Klebsiella_pneumoniae_30660_NJST258_1_4659102-4660628_DIR-... at +/98.82%
rRNA_CP006923_Klebsiella_pneumoniae_30660_NJST258_1_1300055-1301582_DIR+... at +/98.82%
rRNA_CP006923_Klebsiella_pneumoniae_30660_NJST258_1_4286764-4288291_DIR-... at +/98.69%
rRNA_CP006923_Klebsiella_pneumoniae_30660_NJST258_1_5106889-5108415_DIR-... at +/98.82%
rRNA_CP006923_Klebsiella_pneumoniae_30660_NJST258_1_451594-453121_DIR+... at +/98.76%
rRNA_CP006923_Klebsiella_pneumoniae_30660_NJST258_1_5014046-5015572_DIR-... at +/98.82%
rRNA_CP001891_Klebsiella_variicola_At_22_4808623-4810151_DIR-... at +/98.23%
rRNA_CP001891_Klebsiella_variicola_At_22_5409568-5411095_DIR-... at +/98.36%
rRNA_CP001891_Klebsiella_variicola_At_22_4390488-4392015_DIR-... at +/98.30%
rRNA_CP001891_Klebsiella_variicola_At_22_1205909-1207436_DIR+... at +/98.69%
rRNA_CP001891_Klebsiella_variicola_At_22_5167527-5169059_DIR-... at +/97.98%
rRNA_CP001891_Klebsiella_variicola_At_22_5304371-5305898_DIR-... at +/98.43%
rRNA_CP001891_Klebsiella_variicola_At_22_442637-444164_DIR+... at +/98.63%
rRNA_CP001891_Klebsiella_variicola_At_22_5212495-5214023_DIR-... at +/98.43%
rRNA_CP007215_Enterobacter_sacchari_SP1_2834876-2836403_DIR-... at +/98.43%
rRNA_CP007215_Enterobacter_sacchari_SP11_2965517-2967044_DIR-... at +/98.30%
rRNA_CP007215_Enterobacter_sacchari_SP1_3081905-3083432_DIR-... at +/98.23%
rRNA_CP007215_Enterobacter_sacchari_SP1_2150530-2152057_DIR-... at +/98.43%
rRNA_CP007215_Enterobacter_sacchari_SP11_4361662-4363189_DIR+... at +/98.30%
rRNA_CP007215_Enterobacter_sacchari_SP1_4361470-4362997_DIR+... at +/98.30%
rRNA_CP007215_Enterobacter_sacchari_SP11_2877455-2878982_DIR-... at +/98.30%
rRNA_CP007215_Enterobacter_sacchari_SP11_2150633-2152160_DIR-... at +/98.43%
rRNA_CP007215_Enterobacter_sacchari_SP11_3580501-3582028_DIR+... at +/98.43%
rRNA_CP007215_Enterobacter_sacchari_SP1_2965383-2966910_DIR-... at +/98.30%
rRNA_CP007215_Enterobacter_sacchari_SP1_3580336-3581863_DIR+... at +/98.43%
rRNA_CP007215_Enterobacter_sacchari_SP11_3082044-3083571_DIR-... at +/98.23%
rRNA_CP007215_Enterobacter_sacchari_SP11_2835007-2836534_DIR-... at +/98.43%
rRNA_CP007215_Enterobacter_sacchari_SP1_2877324-2878851_DIR-... at +/98.30%
rRNA_CP004142_Raoultella_ornithinolytica_B6_3849067-3850594_DIR-... at +/97.51%
rRNA_CP004142_Raoultella_ornithinolytica_B6_4088856-4090383_DIR-... at +/97.32%
rRNA_CP004142_Raoultella_ornithinolytica_B6_3467553-3469081_DIR-... at +/97.25%
rRNA_CP004142_Raoultella_ornithinolytica_B6_5393119-5394646_DIR+... at +/97.32%
rRNA_CP004142_Raoultella_ornithinolytica_B6_3088523-3090050_DIR-... at +/97.25%
rRNA_CP004142_Raoultella_ornithinolytica_B6_3980921-3982448_DIR-... at +/97.32%
rRNA_CP004142_Raoultella_ornithinolytica_B6_4629899-4631426_DIR+... at +/97.51%
rRNA_CP004142_Raoultella_ornithinolytica_B6_3890764-3892291_DIR-... at +/97.32%
rRNA_FR877557_Salmonella_bongori_NCTC_12419__culture_collection_SGSC_SARC11_272479-274008_DIR+... at
rRNA_CP005390_Salmonella_enterica_subsp__enterica_serovar_Heidelberg_str__CFSAN002_3986000-3987529_D
rRNA_CP005390_Salmonella_enterica_subsp__enterica_serovar_Heidelberg_str__CFSAN002_38694-40223_DIR+.
rRNA_CP005390_Salmonella_enterica_subsp__enterica_serovar_Heidelberg_str__CFSAN002_4636995-4638524_D
rRNA_CP005390_Salmonella_enterica_subsp__enterica_serovar_Heidelberg_str__CFSAN002_4542479-4544008_D
rRNA_CP005390_Salmonella_enterica_subsp__enterica_serovar_Heidelberg_str__CFSAN002_3241007-3242536_D
rRNA_CP005390_Salmonella_enterica_subsp__enterica_serovar_Heidelberg_str__CFSAN002_775197-776726_DIR
rRNA_CP005390_Salmonella_enterica_subsp__enterica_serovar_Heidelberg_str__CFSAN002_4780495-4782024_D
rRNA_HG326223_Serratia_marcescens_subsp__marcescens_Db11_4011748-4013277_DIR-... at +/97.06%
rRNA_HG326223_Serratia_marcescens_subsp__marcescens_Db11_3317414-3318943_DIR-... at +/97.12%
rRNA_HG326223_Serratia_marcescens_subsp__marcescens_Db11_4680250-4681779_DIR+... at +/97.19%
rRNA_CP000036_Shigella_boydii_Sb227_3790022-3791551_DIR+... at +/97.06%
rRNA_CP000034_Shigella_dysenteriae_Sd197_3209663-3211192_DIR-... at +/97.12%
rRNA_CP000034_Shigella_dysenteriae_Sd197_224751-226280_DIR+... at +/97.12%
rRNA_CP000034_Shigella_dysenteriae_Sd197_3490211-3491740_DIR-... at +/97.12%
rRNA_CP000034_Shigella_dysenteriae_Sd197_3623395-3624924_DIR-... at +/97.12%
rRNA_CP000034_Shigella_dysenteriae_Sd197_2625389-2626918_DIR-... at +/97.12%
rRNA_CP000034_Shigella_dysenteriae_Sd197_3722473-3724002_DIR-... at +/97.12%
rRNA_CP000034_Shigella_dysenteriae_Sd197_3448249-3449778_DIR-... at +/97.12%
rRNA_CP004057_Shigella_flexneri_Shi06HN006_3434220-3435749_DIR-... at +/97.06%
rRNA_CP004057_Shigella_flexneri_Shi06HN006_214149-215678_DIR+... at +/97.06%
rRNA_CP004057_Shigella_flexneri_Shi06HN006_4200425-4201954_DIR+... at +/97.06%
rRNA_CP004057_Shigella_flexneri_Shi06HN006_4062736-4064265_DIR+... at +/97.06%
rRNA_CP004057_Shigella_flexneri_Shi06HN006_2752353-2753882_DIR-... at +/97.06%
rRNA_CP004057_Shigella_flexneri_Shi06HN006_3965552-3967081_DIR+... at +/97.06%
rRNA_CP004057_Shigella_flexneri_Shi06HN006_4240861-4242390_DIR+... at +/97.06%
rRNA_HE616528_Shigella_sonnei_53G_main_chromosome_3734739-3736268_DIR-... at +/97.32%
rRNA_HE616528_Shigella_sonnei_53G_main_chromosome_236327-237856_DIR+... at +/97.32%
rRNA_HE616528_Shigella_sonnei_53G_main_chromosome_4541523-4543052_DIR+... at +/97.06%
rRNA_HE616528_Shigella_sonnei_53G_main_chromosome_4372979-4374508_DIR+... at +/97.39%
rRNA_HE616528_Shigella_sonnei_53G_main_chromosome_4268442-4269971_DIR+... at +/97.12%
rRNA_HE616528_Shigella_sonnei_53G_main_chromosome_4581817-4583346_DIR+... at +/97.12%
Cluster: 10
Bacteria:Actinobacteria:Micrococcales:Micrococcaceae:Micrococcus:Unclassified:Unclassified:Unclassif
rRNA_CP001628_Micrococcus_luteus_NCTC_2665_1563113-1566028_DIR-... *
Cluster: 18
Bacteria:Firmicutes:Bacilli:Bacillales:Paenibacillaceae:Paenibacillus:Bacillus:Unclassified
Bacteria:Firmicutes:Bacilli:Bacillales:Paenibacillaceae:Paenibacillus:Unclassified:Unclassified
rRNA_CP006941_Paenibacillus_polymyxa_CR1_4870824-4872367_DIR-... at +/97.99%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_5297863-5299415_DIR+... at +/97.68%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_84080-85624_DIR+... at +/98.45%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_799743-801297_DIR+... at +/97.43%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_5192956-5194499_DIR-... at +/98.06%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_13461-15016_DIR+... at +/97.43%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_1030335-1031889_DIR+... at +/97.56%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_338817-340377_DIR-... at +/98.01%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_352551-354110_DIR+... at +/98.01%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_338815-340359_DIR-... at +/97.86%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_2504629-2507097_DIR+... *
rRNA_CP006941_Paenibacillus_polymyxa_CR11_4495038-4496594_DIR-... at +/97.43%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_352556-354115_DIR+... at +/98.01%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_5302641-5304195_DIR+... at +/97.49%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_4499821-4501365_DIR-... at +/98.06%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_84078-85622_DIR+... at +/98.45%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_13461-15016_DIR+... at +/97.43%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_2699643-2701174_DIR+... at +/97.52%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_799748-801285_DIR+... at +/98.24%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_4866037-4867591_DIR-... at +/97.17%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_5197734-5199277_DIR-... at +/98.06%
rRNA_CP006941_Paenibacillus_polymyxa_CR11_2504641-2507109_DIR+... at +/100.00%
rRNA_CP006941_Paenibacillus_polymyxa_CR1_1030323-1031877_DIR+... at +/97.56%
Cluster: 864
Bacteria:Proteobacteria:Alphaproteobacteria:Rhodobacterales:Rhodobacteraceae:Rhodovulum:uncultured_b
rRNA_CP001312_Rhodobacter_capsulatus_SB_1003_160332-161786_DIR+... *
rRNA_CP001312_Rhodobacter_capsulatus_SB_1003_3580657-3582111_DIR-... at +/100.00%
rRNA_CP001312_Rhodobacter_capsulatus_SB_1003_1514123-1515577_DIR+... at +/100.00%
rRNA_CP001312_Rhodobacter_capsulatus_SB_1003_1004098-1005552_DIR+... at +/100.00%
Cluster: 709
Bacteria:Actinobacteria:Frankiales:Frankiaceae:Frankia:Unclassified:Unclassified:Unclassified
Bacteria:Actinobacteria:Frankiales:Frankiaceae:Frankia:uncultured_bacterium:Unclassified:Unclassifie
rRNA_CT573213_Frankia_alni_str__ACN14A_chromosome__complete_sequence_6360965-6362462_DIR-... *
rRNA_CT573213_Frankia_alni_str__ACN14A_chromosome__complete_sequence_5633237-5634734_DIR-... at +/10
Cluster: 720
Bacteria:Bacteroidetes:Cytophagia:Cytophagales:Cytophagaceae:Dyadobacter:Unclassified:Unclassified
rRNA_CP001619_Dyadobacter_fermentans_DSM_18053_4611730-4613224_DIR+... *
rRNA_CP001619_Dyadobacter_fermentans_DSM_18053_4003859-4005353_DIR-... at +/99.53%
rRNA_CP001619_Dyadobacter_fermentans_DSM_18053_5058638-5060132_DIR+... at +/100.00%
rRNA_CP001619_Dyadobacter_fermentans_DSM_18053_4639275-4640769_DIR+... at +/100.00%
Cluster: 396
Bacteria:Firmicutes:Bacilli:Bacillales:Paenibacillaceae:Paenibacillus:Unclassified:Unclassified
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_1069624-1071148_DIR+... *
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_8086925-8088449_DIR-... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_256982-258506_DIR+... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_3649570-3651094_DIR+... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_8257233-8258757_DIR-... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_181713-183237_DIR+... at +/99.93%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_8034782-8036306_DIR-... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_8324389-8325913_DIR-... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_577600-579124_DIR+... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_10601-12125_DIR+... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_8192549-8194073_DIR-... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_7588714-7590238_DIR-... at +/100.00%
rRNA_CP002869_Paenibacillus_mucilaginosus_KNP414_693885-695409_DIR+... at +/100.00%
Cluster: 151
Bacteria:Proteobacteria:Deltaproteobacteria:Myxococcales:Nannocystineae:Haliangiaceae:Haliangium:Unc
rRNA_CP001804_Haliangium_ochraceum_DSM_14365_171442-172985_DIR+... *
rRNA_CP001804_Haliangium_ochraceum_DSM_14365_2898792-2900335_DIR+... at +/100.00%
Cluster: 743
Bacteria:Firmicutes:Clostridia:Clostridiales:Peptostreptococcaceae:Incertae_Sedis:Unclassified:Uncla
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_149387-150877_DIR+... *
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_3800336-3801826_DIR-... at +/9
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_30432-31922_DIR+... at +/99.60
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_154800-156290_DIR+... at +/99.
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_1100165-1101655_DIR+... at +/9
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_16112-17602_DIR+... at +/99.66
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_2993877-2995367_DIR-... at +/9
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_390978-392468_DIR+... at +/99.
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_133301-134791_DIR+... at +/99.
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_10819-12309_DIR+... at +/99.60
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_3955961-3957451_DIR-... at +/9
rRNA_FN668941_Clostridium_difficile_BI1_chromosome__complete_sequence_138878-140368_DIR+... at +/99.
Cluster: 744
Bacteria:Acidobacteria:Acidobacteriales:Acidobacteriaceae:uncultured:Unclassified:Unclassified:Uncla
rRNA_CP000360_Candidatus_Koribacter_versatilis_Ellin345_5260072-5261561_DIR-... *
Cluster: 558
Bacteria:Actinobacteria:Corynebacteriales:Mycobacteriaceae:Mycobacterium:uncultured_compost_bacteriu
Bacteria:Actinobacteria:Corynebacteriales:Mycobacteriaceae:Mycobacterium:Unclassified:Unclassified:U
Bacteria:Actinobacteria:Corynebacteriales:Mycobacteriaceae:Mycobacterium:Unclassified:Unclassified:U
rRNA_CP003053_Mycobacterium_chubuense_NBB4_2722536-2724043_DIR+... at +/98.14%
rRNA_CP003053_Mycobacterium_chubuense_NBB4_3967521-3969028_DIR-... at +/98.14%
rRNA_CP000656_Mycobacterium_gilvum_PYR_GCK_2414610-2416117_DIR+... at +/97.81%
rRNA_CP000656_Mycobacterium_gilvum_PYR_GCK_3743087-3744594_DIR-... at +/97.81%
rRNA_CP006936_Mycobacterium_neoaurum_VKM_Ac_1815D_4237600-4239107_DIR-... at +/97.75%
rRNA_CP006936_Mycobacterium_neoaurum_VKM_Ac_1815D1_3588251-3589758_DIR-... at +/97.75%
rRNA_CP006936_Mycobacterium_neoaurum_VKM_Ac_1815D1_4237600-4239107_DIR-... at +/97.75%
rRNA_CP006936_Mycobacterium_neoaurum_VKM_Ac_1815D_3588251-3589758_DIR-... at +/97.75%
rRNA_CP003169_Mycobacterium_rhodesiae_NBB3_3835346-3836853_DIR+... at +/97.41%
rRNA_CP003169_Mycobacterium_rhodesiae_NBB3_4695944-4697451_DIR+... at +/97.41%
rRNA_CP003078_Mycobacterium_smegmatis_JS623_3049608-3051119_DIR+... *
rRNA_CP003078_Mycobacterium_smegmatis_JS623_4648327-4649838_DIR-... at +/100.00%
rRNA_CP000511_Mycobacterium_vanbaalenii_PYR_1_4637800-4639309_DIR-... at +/97.48%
rRNA_CP000511_Mycobacterium_vanbaalenii_PYR_1_3504697-3506206_DIR-... at +/97.55%
Cluster: 555
Bacteria:Actinobacteria:Micrococcales:Microbacteriaceae:Leifsonia:Unclassified:Unclassified:Unclassi
Bacteria:Actinobacteria:Micrococcales:Microbacteriaceae:Agromyces:Unclassified:Unclassified:Unclassi
rRNA_CP006734_Leifsonia_xyli_subsp__cynodontis_DSM_46306_2472879-2474390_DIR-... *
Cluster: 551
Bacteria:Gemmatimonadetes:Gemmatimonadales:Gemmatimonadaceae:Gemmatimonas:Unclassified:Unclassified:
rRNA_AP009153_Gemmatimonas_aurantiaca_T_27_DNA_1882865-1884376_DIR+... *
Cluster: 235
Bacteria:Proteobacteria:Gammaproteobacteria:Aeromonadales:Aeromonadaceae:Aeromonas:Unclassified:Uncl
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_974736-976268_DIR+... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_235810-237342_DIR+... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_4980554-4982086_DIR-... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_4685206-4686738_DIR-... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_184255-185787_DIR+... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_4769218-4770750_DIR-... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_367296-368828_DIR+... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_106193-107725_DIR+... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_4229127-4230659_DIR-... at +/99.48%
rRNA_CP007566_Aeromonas_hydrophila_AL09_71_843181-844713_DIR+... at +/98.63%
rRNA_CP007567_Aeromonas_media_WS_4483002-4484534_DIR+... at +/99.09%
rRNA_CP007567_Aeromonas_media_WS_3510217-3511749_DIR-... at +/99.93%
rRNA_CP007567_Aeromonas_media_WS_4228165-4229697_DIR+... at +/99.28%
rRNA_CP007567_Aeromonas_media_WS_4640228-4641760_DIR-... at +/99.93%
rRNA_CP007567_Aeromonas_media_WS_4115731-4117262_DIR-... at +/99.48%
rRNA_CP007567_Aeromonas_media_WS_387258-388791_DIR+... *
rRNA_CP007567_Aeromonas_media_WS_4486649-4488182_DIR-... at +/99.28%
rRNA_CP007567_Aeromonas_media_WS_4356320-4357852_DIR+... at +/99.35%
rRNA_CP007567_Aeromonas_media_WS_8883-10410_DIR+... at +/99.87%
rRNA_CP007567_Aeromonas_media_WS_3891689-3893221_DIR-... at +/99.35%
rRNA_CP007567_Aeromonas_media_WS_4435675-4437206_DIR+... at +/99.35%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_4486222-4487754_DIR-... at +/98.50%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_819419-820951_DIR+... at +/98.76%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_4362130-4363662_DIR-... at +/98.63%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_3708422-3709954_DIR-... at +/98.63%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_313296-314828_DIR+... at +/98.63%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_3891962-3893494_DIR-... at +/98.63%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_4616903-4618435_DIR-... at +/98.56%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_83347-84879_DIR+... at +/98.50%
rRNA_CP000644_Aeromonas_salmonicida_subsp__salmonicida_A449_4537414-4538946_DIR-... at +/98.63%
rRNA_CP002607_Aeromonas_veronii_B565_4430939-4432471_DIR-... at +/98.89%
rRNA_CP002607_Aeromonas_veronii_B565_487151-488683_DIR+... at +/98.89%
rRNA_CP002607_Aeromonas_veronii_B565_4357720-4359252_DIR-... at +/98.83%
rRNA_CP002607_Aeromonas_veronii_B565_4030839-4032371_DIR-... at +/98.89%
rRNA_CP002607_Aeromonas_veronii_B565_224939-226471_DIR+... at +/99.02%
rRNA_CP002607_Aeromonas_veronii_B565_4181372-4182904_DIR-... at +/98.83%
rRNA_CP002607_Aeromonas_veronii_B565_811191-812723_DIR+... at +/98.89%
rRNA_CP002607_Aeromonas_veronii_B565_62061-63593_DIR+... at +/99.02%
rRNA_CP002607_Aeromonas_veronii_B565_3815785-3817317_DIR-... at +/98.89%
rRNA_CP002607_Aeromonas_veronii_B565_4507952-4509484_DIR-... at +/98.96%
Cluster: 34
Bacteria:Firmicutes:Clostridia:Clostridiales:Peptococcaceae:Desulfosporosinus:uncultured_bacterium:U
rRNA_CP003639_Desulfosporosinus_acidiphilus_SJ4_3672910-3674465_DIR-... at +/97.11%
rRNA_CP003639_Desulfosporosinus_acidiphilus_SJ4_2953029-2954675_DIR-... *
rRNA_CP003639_Desulfosporosinus_acidiphilus_SJ4_2327633-2329188_DIR+... at +/97.04%
Cluster: 232
Bacteria:Proteobacteria:Gammaproteobacteria:Xanthomonadales:Xanthomonadaceae:Stenotrophomonas:Unclas
rRNA_CP001111_Stenotrophomonas_maltophilia_R551_3_353034-354568_DIR+... *
rRNA_CP001111_Stenotrophomonas_maltophilia_R551_3_4505787-4507321_DIR-... at +/100.00%
rRNA_CP001111_Stenotrophomonas_maltophilia_R551_3_4511457-4512991_DIR-... at +/99.93%
rRNA_CP001111_Stenotrophomonas_maltophilia_R551_3_358704-360238_DIR+... at +/100.00%
rRNA_CP004399_Xanthomonas_axonopodis_Xac29_1_5048970-5050504_DIR-... at +/97.07%
rRNA_CP004399_Xanthomonas_axonopodis_Xac29_1_4587171-4588705_DIR-... at +/97.07%
rRNA_AE008923_Xanthomonas_axonopodis_pv__citri_str__306_5069302-5070836_DIR-... at +/97.07%
rRNA_AE008923_Xanthomonas_axonopodis_pv__citri_str__306_4580060-4581594_DIR-... at +/97.07%
rRNA_CP002914_Xanthomonas_axonopodis_pv__citrumelo_F1_4846024-4847558_DIR-... at +/97.13%
rRNA_CP002914_Xanthomonas_axonopodis_pv__citrumelo_F1_4382879-4384413_DIR-... at +/97.13%
rRNA_CP002789_Xanthomonas_campestris_pv__raphani_756C_480035-481569_DIR+... at +/97.13%
rRNA_CP002789_Xanthomonas_campestris_pv__raphani_756C_4814368-4815902_DIR-... at +/97.13%
rRNA_AM039952_Xanthomonas_campestris_pv__vesicatoria_5058746-5060280_DIR-... at +/97.13%
rRNA_AM039952_Xanthomonas_campestris_pv__vesicatoria_4604567-4606101_DIR-... at +/97.13%
rRNA_CP000967_Xanthomonas_oryzae_pv__oryzae_PXO99A_5086803-5088337_DIR-... at +/97.07%
rRNA_CP000967_Xanthomonas_oryzae_pv__oryzae_PXO99A_4861404-4862938_DIR-... at +/97.07%
Cluster: 233
Bacteria:Proteobacteria:Deltaproteobacteria:Myxococcales:Cystobacterineae:Unclassified:Unclassified:
rRNA_CP002271_Stigmatella_aurantiaca_DW4_3_1_575190-576724_DIR+... *
rRNA_CP002271_Stigmatella_aurantiaca_DW4_3_1_6869294-6870828_DIR-... at +/99.93%
Cluster: 640
Bacteria:Spirochaetes:Spirochaetales:Leptospiraceae:Turneriella:uncultured_bacterium:Unclassified:Un
Bacteria:Spirochaetes:Spirochaetales:Leptospiraceae:Turneriella:uncultured_bacterium:Unclassified:Un
rRNA_CP002959_Turneriella_parva_DSM_21527_2844748-2846253_DIR+... *
rRNA_CP002959_Turneriella_parva_DSM_21527_3819378-3820883_DIR-... at +/100.00%
Cluster: 46
Bacteria:Firmicutes:Bacilli:Bacillales:Paenibacillaceae:Thermobacillus:Unclassified:Unclassified
rRNA_CP003255_Thermobacillus_composti_KWC4_337186-338778_DIR+... *
rRNA_CP003255_Thermobacillus_composti_KWC4_3749741-3751333_DIR-... at +/99.31%
rRNA_CP003255_Thermobacillus_composti_KWC4_3974027-3975619_DIR-... at +/99.94%
rRNA_CP003255_Thermobacillus_composti_KWC4_1602568-1604160_DIR+... at +/100.00%
rRNA_CP003255_Thermobacillus_composti_KWC4_3037780-3039372_DIR-... at +/99.75%
Cluster: 874
Bacteria:Proteobacteria:Alphaproteobacteria:Caulobacterales:Caulobacteraceae:Brevundimonas:unculture
Bacteria:Proteobacteria:Alphaproteobacteria:Caulobacterales:Caulobacteraceae:Brevundimonas:Unclassif
rRNA_CP002102_Brevundimonas_subvibrioides_ATCC_15264_2980512-2981960_DIR-... *
rRNA_CP002102_Brevundimonas_subvibrioides_ATCC_15264_2754224-2755672_DIR-... at +/100.00%
Cluster: 873
Bacteria:Proteobacteria:Alphaproteobacteria:Caulobacterales:Caulobacteraceae:Asticcacaulis:Asticcaca
rRNA_CP002395_Asticcacaulis_excentricus_CB_48_chromosome_1__complete_sequence_553109-554557_DIR+...
rRNA_CP002396_Asticcacaulis_excentricus_CB_48_chromosome_2__complete_sequence_1074072-1075520_DIR-..
rRNA_CP002396_Asticcacaulis_excentricus_CB_48_chromosome_2__complete_sequence_149905-151353_DIR+...
Cluster: 871
Bacteria:Proteobacteria:Alphaproteobacteria:Rhodobacterales:Rhodobacteraceae:Unclassified:Unclassifi
rRNA_CP006650_Paracoccus_aminophilus_JCM_7686_69111-70561_DIR+... *
rRNA_CP006650_Paracoccus_aminophilus_JCM_7686_2914359-2915809_DIR-... at +/100.00%
rRNA_CP006650_Paracoccus_aminophilus_JCM_7686_156329-157779_DIR+... at +/100.00%
rRNA_CP000490_Paracoccus_denitrificans_PD1222_chromosome_2__complete_sequence_141988-143438_DIR+...
rRNA_CP000489_Paracoccus_denitrificans_PD1222_chromosome_1__complete_sequence_1978375-1979825_DIR-..
rRNA_CP000489_Paracoccus_denitrificans_PD1222_chromosome_1__complete_sequence_58447-59897_DIR+... at
Cluster: 638
Bacteria:Actinobacteria:Corynebacteriales:Nocardiaceae:Rhodococcus:Unclassified:Unclassified:Unclass
Bacteria:Actinobacteria:Corynebacteriales:Nocardiaceae:Rhodococcus:Unclassified:Unclassified:Unclass
rRNA_AP008957_Rhodococcus_erythropolis_PR4_DNA_572200-573705_DIR+... *
rRNA_AP008957_Rhodococcus_erythropolis_PR4_DNA_4279564-4281069_DIR-... at +/100.00%
rRNA_AP008957_Rhodococcus_erythropolis_PR4_DNA_4470268-4471773_DIR-... at +/100.00%
rRNA_AP008957_Rhodococcus_erythropolis_PR4_DNA_590246-591751_DIR+... at +/100.00%
rRNA_AP008957_Rhodococcus_erythropolis_PR4_DNA_3549708-3551213_DIR-... at +/100.00%
Cluster: 808
Bacteria:Proteobacteria:Alphaproteobacteria:Sphingomonadales:Sphingomonadaceae:Sphingopyxis:Unclassi
rRNA_CP000356_Sphingopyxis_alaskensis_RB2256_2851573-2853049_DIR-... *
Cluster: 675
Bacteria:Bacteroidetes:Flavobacteria:Flavobacteriales:Flavobacteriaceae:Flavobacterium:uncultured_ba
Bacteria:Bacteroidetes:Flavobacteria:Flavobacteriales:Flavobacteriaceae:Flavobacterium:Unclassified:
rRNA_CP000685_Flavobacterium_johnsoniae_UW101_27889-29390_DIR-... *
rRNA_CP000685_Flavobacterium_johnsoniae_UW101_2304230-2305731_DIR+... at +/99.87%
rRNA_CP000685_Flavobacterium_johnsoniae_UW101_5122307-5123808_DIR-... at +/99.87%
rRNA_CP000685_Flavobacterium_johnsoniae_UW101_3263832-3265333_DIR+... at +/99.87%
rRNA_CP000685_Flavobacterium_johnsoniae_UW101_2544899-2546400_DIR+... at +/99.87%
rRNA_CP000685_Flavobacterium_johnsoniae_UW101_504229-505730_DIR-... at +/99.73%
Cluster: 144
Bacteria:Firmicutes:Bacilli:Bacillales:Paenibacillaceae:Paenibacillus:Unclassified:Unclassified
rRNA_CP004078_Paenibacillus_sabinae_T27_4734994-4736538_DIR-... *
rRNA_CP004078_Paenibacillus_sabinae_T27_128776-130318_DIR+... at +/98.57%
rRNA_CP004078_Paenibacillus_sabinae_T27_4664719-4666262_DIR-... at +/98.70%
rRNA_CP004078_Paenibacillus_sabinae_T27_3961582-3963124_DIR-... at +/99.42%
rRNA_CP004078_Paenibacillus_sabinae_T27_78678-80220_DIR+... at +/98.51%
rRNA_CP004078_Paenibacillus_sabinae_T27_4493284-4494828_DIR-... at +/99.61%
rRNA_CP004078_Paenibacillus_sabinae_T27_658837-660380_DIR+... at +/98.77%
rRNA_CP004078_Paenibacillus_sabinae_T27_12008-13552_DIR+... at +/98.96%
rRNA_CP004078_Paenibacillus_sabinae_T27_974132-975674_DIR+... at +/98.51%
Cluster: 771
Bacteria:Cyanobacteria:SubsectionIII:FamilyI:Microcoleus:Unclassified:Unclassified:Unclassified
rRNA_CP003614_Oscillatoria_nigro_viridis_PCC_7112_566533-568020_DIR+... *
rRNA_CP003614_Oscillatoria_nigro_viridis_PCC_7112_4288160-4289647_DIR-... at +/100.00%
Cluster: 616
Bacteria:Bacteroidetes:Sphingobacteriia:Sphingobacteriales:Sphingobacteriaceae:Solitalea:uncultured_
rRNA_CP003349_Solitalea_canadensis_DSM_3403_7707-9214_DIR+... *
rRNA_CP003349_Solitalea_canadensis_DSM_3403_1464128-1465635_DIR+... at +/100.00%
rRNA_CP003349_Solitalea_canadensis_DSM_3403_736595-738102_DIR+... at +/100.00%
rRNA_CP003349_Solitalea_canadensis_DSM_3403_38623-40130_DIR+... at +/100.00%
Cluster: 614
Bacteria:Actinobacteria:Pseudonocardiales:Pseudonocardiaceae:Pseudonocardia:uncultured_bacterium:Unc
rRNA_CP002593_Pseudonocardia_dioxanivorans_CB1190_577609-579116_DIR+... *
rRNA_CP002593_Pseudonocardia_dioxanivorans_CB1190_4088454-4089961_DIR-... at +/100.00%
rRNA_CP002593_Pseudonocardia_dioxanivorans_CB1190_5160377-5161884_DIR-... at +/100.00%
Cluster: 149
Bacteria:Proteobacteria:Deltaproteobacteria:Desulfuromonadales:Geobacteraceae:Geobacter:uncultured_b
rRNA_CP000148_Geobacter_metallireducens_GS_15_1310044-1311587_DIR+... *
rRNA_CP000148_Geobacter_metallireducens_GS_15_3244516-3246059_DIR-... at +/100.00%
Cluster: 487
Bacteria:Firmicutes:Clostridia:Clostridiales:Ruminococcaceae:Oscillibacter:uncultured_Oscillospirace
rRNA_AP012044_Oscillibacter_valericigenes_Sjm18_20_DNA_420895-422412_DIR+... *
rRNA_AP012044_Oscillibacter_valericigenes_Sjm18_20_DNA_1864527-1866044_DIR+... at +/100.00%
rRNA_AP012044_Oscillibacter_valericigenes_Sjm18_20_DNA_1260699-1262216_DIR+... at +/100.00%
Cluster: 836
Bacteria:Proteobacteria:Alphaproteobacteria:Rhizobiales:Xanthobacteraceae:Unclassified:Unclassified:
rRNA_CP002026_Starkeya_novella_DSM_506_3442778-3444250_DIR-... *
Cluster: 687
Bacteria:Firmicutes:Clostridia:Clostridiales:Clostridiaceae:Alkaliphilus:Unclassified:Unclassified
rRNA_CP000853_Alkaliphilus_oremlandii_OhILAs_2608522-2610021_DIR-... *
rRNA_CP000853_Alkaliphilus_oremlandii_OhILAs_63174-64673_DIR+... at +/99.93%
rRNA_CP000853_Alkaliphilus_oremlandii_OhILAs_2601979-2603478_DIR-... at +/99.93%
rRNA_CP000853_Alkaliphilus_oremlandii_OhILAs_49919-51418_DIR+... at +/99.93%
rRNA_CP000853_Alkaliphilus_oremlandii_OhILAs_1927901-1929400_DIR-... at +/99.93%
rRNA_CP000853_Alkaliphilus_oremlandii_OhILAs_507715-509214_DIR+... at +/99.93%
rRNA_CP000853_Alkaliphilus_oremlandii_OhILAs_11368-12867_DIR+... at +/99.93%
rRNA_CP000853_Alkaliphilus_oremlandii_OhILAs_2615936-2617435_DIR-... at +/99.93%
Cluster: 481
Bacteria:Firmicutes:Clostridia:Clostridiales:Lachnospiraceae:Incertae_Sedis:Unclassified:Unclassifie
rRNA_CP002109_Clostridium_saccharolyticum_WM1_3681375-3682893_DIR-... *
rRNA_CP002109_Clostridium_saccharolyticum_WM1_18567-20085_DIR+... at +/99.67%
rRNA_CP002109_Clostridium_saccharolyticum_WM1_704325-705843_DIR+... at +/99.67%
rRNA_CP002109_Clostridium_saccharolyticum_WM1_397549-399067_DIR+... at +/99.74%
rRNA_CP002109_Clostridium_saccharolyticum_WM1_196661-198179_DIR+... at +/99.74%
rRNA_CP002109_Clostridium_saccharolyticum_WM1_795041-796559_DIR+... at +/99.67%
Cluster: 807
Bacteria:Proteobacteria:Alphaproteobacteria:Sphingomonadales:Sphingomonadaceae:Novosphingobium:Uncla
rRNA_CP009291_Novosphingobium_pentaromativorans_US6_1_2516124-2517600_DIR+... *
rRNA_CP009291_Novosphingobium_pentaromativorans_US6_1_1254654-1256130_DIR-... at +/100.00%
rRNA_CP009291_Novosphingobium_pentaromativorans_US6_1_2263898-2265374_DIR-... at +/100.00%
Cluster: 471
Bacteria:Proteobacteria:Betaproteobacteria:Burkholderiales:Comamonadaceae:uncultured:uncultured_bact
rRNA_CP000555_Methylibium_petroleiphilum_PM1_352308-353826_DIR+... *
Cluster: 351
Bacteria:Firmicutes:Clostridia:Thermoanaerobacterales:Thermoanaerobacteraceae:Thermacetogenium:uncul
rRNA_CP003732_Thermacetogenium_phaeum_DSM_12270_2629202-2630729_DIR-... *
rRNA_CP003732_Thermacetogenium_phaeum_DSM_12270_1417851-1419378_DIR-... at +/100.00%
rRNA_CP003732_Thermacetogenium_phaeum_DSM_12270_1842348-1843875_DIR-... at +/100.00%
Cluster: 478
Bacteria:Actinobacteria:Streptomycetales:Streptomycetaceae:Streptomyces:Unclassified:Unclassified:Un
Bacteria:Actinobacteria:Streptomycetales:Streptomycetaceae:Kitasatospora:Unclassified:Unclassified:U
rRNA_BA000030_Streptomyces_avermitilis_MA_4680___NBRC_14893_DNA_3077215-3078728_DIR-... at +/98.02%
rRNA_BA000030_Streptomyces_avermitilis_MA_4680___NBRC_14893_DNA_5759351-5760864_DIR+... at +/98.02%
rRNA_BA000030_Streptomyces_avermitilis_MA_4680___NBRC_14893_DNA_8328605-8330118_DIR+... at +/98.02%
rRNA_BA000030_Streptomyces_avermitilis_MA_4680___NBRC_14893_DNA_7765522-7767035_DIR+... at +/98.02%
rRNA_BA000030_Streptomyces_avermitilis_MA_4680___NBRC_14893_DNA_6124395-6125908_DIR+... at +/98.02%
rRNA_BA000030_Streptomyces_avermitilis_MA_4680___NBRC_14893_DNA_5027755-5029268_DIR-... at +/98.02%
rRNA_CP005080_Streptomyces_fulvissimus_DSM_40593_1042653-1044166_DIR-... at +/99.80%
rRNA_CP005080_Streptomyces_fulvissimus_DSM_40593_4355830-4357343_DIR+... at +/99.80%
rRNA_CP005080_Streptomyces_fulvissimus_DSM_40593_2971569-2973082_DIR-... at +/99.80%
rRNA_CP005080_Streptomyces_fulvissimus_DSM_40593_3423347-3424860_DIR-... at +/99.80%
rRNA_CP005080_Streptomyces_fulvissimus_DSM_40593_6254343-6255856_DIR+... at +/99.80%
rRNA_CP005080_Streptomyces_fulvissimus_DSM_40593_1541996-1543509_DIR-... at +/99.80%
rRNA_AP009493_Streptomyces_griseus_subsp__griseus_NBRC_13350_DNA_2102307-2103820_DIR-... at +/99.80%
rRNA_AP009493_Streptomyces_griseus_subsp__griseus_NBRC_13350_DNA_4592155-4593668_DIR+... at +/99.80%
rRNA_AP009493_Streptomyces_griseus_subsp__griseus_NBRC_13350_DNA_6683065-6684578_DIR+... at +/99.80%
rRNA_AP009493_Streptomyces_griseus_subsp__griseus_NBRC_13350_DNA_5288085-5289598_DIR+... at +/99.80%
rRNA_AP009493_Streptomyces_griseus_subsp__griseus_NBRC_13350_DNA_4842381-4843894_DIR+... at +/99.80%
rRNA_AP009493_Streptomyces_griseus_subsp__griseus_NBRC_13350_DNA_7243314-7244827_DIR+... at +/99.80%
rRNA_CP003275_Streptomyces_hygroscopicus_subsp__jinggangensis_5008_3321915-3323428_DIR-... at +/97.5
rRNA_CP003275_Streptomyces_hygroscopicus_subsp__jinggangensis_5008_6383574-6385087_DIR+... at +/97.4
rRNA_CP003275_Streptomyces_hygroscopicus_subsp__jinggangensis_5008_5169935-5171448_DIR-... at +/97.4
rRNA_CP003275_Streptomyces_hygroscopicus_subsp__jinggangensis_5008_5685744-5687257_DIR-... at +/97.4
rRNA_CP003275_Streptomyces_hygroscopicus_subsp__jinggangensis_5008_7774429-7775942_DIR+... at +/97.4
rRNA_CP003275_Streptomyces_hygroscopicus_subsp__jinggangensis_5008_3797027-3798540_DIR-... at +/97.5
rRNA_CP002475_Streptomyces_pratensis_ATCC_33331_1964777-1966290_DIR-... at +/99.93%
rRNA_CP002475_Streptomyces_pratensis_ATCC_33331_4085105-4086618_DIR+... at +/99.93%
rRNA_CP002475_Streptomyces_pratensis_ATCC_33331_6290327-6291840_DIR+... at +/99.93%
rRNA_CP002475_Streptomyces_pratensis_ATCC_33331_5778352-5779865_DIR+... at +/99.87%
rRNA_CP002475_Streptomyces_pratensis_ATCC_33331_4476406-4477924_DIR+... *
rRNA_CP002475_Streptomyces_pratensis_ATCC_33331_3410739-3412252_DIR-... at +/99.93%
rRNA_FN554889_Streptomyces_scabiei_87_22_2859189-2860700_DIR-... at +/97.02%
rRNA_FN554889_Streptomyces_scabiei_87_22_5487038-5488551_DIR+... at +/97.09%
rRNA_FN554889_Streptomyces_scabiei_87_22_8426445-8427958_DIR+... at +/97.09%
rRNA_FN554889_Streptomyces_scabiei_87_22_7917815-7919328_DIR+... at +/97.09%
rRNA_FN554889_Streptomyces_scabiei_87_22_6141556-6143069_DIR+... at +/97.09%
rRNA_FN554889_Streptomyces_scabiei_87_22_4403297-4404810_DIR-... at +/97.09%
rRNA_CP002994_Streptomyces_violaceusniger_Tu_4113_373994-375508_DIR+... at +/97.03%
rRNA_CP002994_Streptomyces_violaceusniger_Tu_4113_2020050-2021564_DIR+... at +/97.03%
Cluster: 681
Bacteria:Firmicutes:Clostridia:Clostridiales:Clostridiaceae:Clostridium:uncultured_bacterium:Unclass
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_2254710-2256209_DIR+... at +/98.53%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_5748917-5750416_DIR-... at +/98.60%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_446133-447632_DIR+... at +/98.67%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_2266365-2267864_DIR+... at +/98.73%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_5772147-5773646_DIR-... at +/98.47%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_142453-143952_DIR+... at +/98.47%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_5739864-5741363_DIR-... at +/98.53%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_3402721-3404220_DIR-... at +/98.67%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_5929877-5931376_DIR-... at +/98.73%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_924919-926418_DIR+... at +/98.67%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_9623-11122_DIR+... at +/98.47%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_5766210-5767709_DIR-... at +/98.67%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_4546433-4547932_DIR-... at +/98.47%
rRNA_CP006777_Clostridium_beijerinckii_ATCC_35702_2031250-2032749_DIR+... at +/98.40%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_5049451-5050951_DIR-... *
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_4902275-4903775_DIR-... at +/99.80%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_473730-475230_DIR+... at +/99.87%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_5043345-5044845_DIR-... at +/100.00%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_4928069-4929569_DIR-... at +/100.00%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_168690-170190_DIR+... at +/99.87%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_4894153-4895653_DIR-... at +/99.67%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_5037619-5039119_DIR-... at +/100.00%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_1140029-1141529_DIR+... at +/99.60%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_9515-11015_DIR+... at +/99.87%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_4911371-4912871_DIR-... at +/100.00%
rRNA_CP006721_Clostridium_saccharobutylicum_DSM_13864_2089597-2091097_DIR+... at +/99.80%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_6252854-6254354_DIR-... at +/98.80%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_5788910-5790410_DIR-... at +/98.80%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_560682-562182_DIR+... at +/98.93%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_6236066-6237566_DIR-... at +/98.80%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_5763217-5764717_DIR-... at +/98.87%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_149180-150680_DIR+... at +/98.87%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_6226852-6228352_DIR-... at +/98.80%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_802658-804158_DIR+... at +/98.87%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_9446-10946_DIR+... at +/98.73%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_4257786-4259286_DIR-... at +/98.60%
rRNA_CP004121_Clostridium_saccharoperbutylacetonicum_N1_4_HMT_6437713-6439213_DIR-... at +/98.87%
Cluster: 806
Bacteria:Cyanobacteria:SubsectionIV:FamilyI:Nostoc:Unclassified:Unclassified:Unclassified
rRNA_CP001037_Nostoc_punctiforme_PCC_73102_2021496-2022972_DIR+... *
rRNA_CP001037_Nostoc_punctiforme_PCC_73102_5515634-5517110_DIR-... at +/100.00%
rRNA_CP001037_Nostoc_punctiforme_PCC_73102_6502978-6504454_DIR-... at +/99.86%
rRNA_CP001037_Nostoc_punctiforme_PCC_73102_6085177-6086653_DIR+... at +/100.00%
Notes:
In [227]:
def write_targets_OLD(tbl, fh):
fh.write('\t'.join(['cluster', 'ssu_ID', 'target_genome', 'OTU', 'OTU_taxonomy']) + '\n')
for clstr,x in tbl.items():
# parsing cluster
targets = []
otus = []
for y in x:
ID = y[2].lstrip('>')
ID = re.sub('\.\.\..+','', ID)
if ID.startswith('OTU'):
otu = [ID, ':'.join(y[3])]
otus.append(otu)
elif ID.startswith('rRNA'):
targets.append(ID)
# writing out list
for target in targets:
for otu in otus:
genome = target.lstrip('rRNA_')
genome = re.sub('_\d+-\d+_DIR.+', '', genome)
fh.write('\t'.join([clstr, target, genome] + otu) + '\n')
In [244]:
def write_targets(tbl, fh):
fh.write('\t'.join(['cluster', 'ssu_ID', 'target_genome', 'OTU', 'OTU_taxonomy']) + '\n')
for clstr,rows in tbl.items():
# parsing cluster; getting all OTUs and genome_IDs
targets = []
otus = []
for row in rows:
ID = row[2].lstrip('>')
ID = re.sub('\.\.\..+','', ID)
if ID.startswith('OTU'):
otu = [ID, ':'.join(row[3])]
otus.append(otu)
elif ID.startswith('rRNA'):
targets.append(ID)
# writing out list
## one 1 randomly selected genome is associated with OTU
random.shuffle(targets)
for otu, target in zip(otus, itertools.cycle(targets)):
genome = target.lstrip('rRNA_')
genome = re.sub('_\d+-\d+_DIR.+', '', genome)
fh.write('\t'.join([clstr, target, genome] + otu) + '\n')
#for otu in otus:
#for target in targets:
# genome = target.lstrip('rRNA_')
# genome = re.sub('_\d+-\d+_DIR.+', '', genome)
# fh.write('\t'.join([clstr, target, genome] + otu) + '\n')
In [245]:
outFile = os.path.join(workDir, 'target_taxa.txt')
with open(outFile, 'wb') as oFH:
write_targets(tbl_f, oFH)
In [230]:
!printf "Number of clusters: "
!cd $workDir; \
tail -n +2 target_taxa.txt | cut -f 1 | sort -u | wc -l
Number of clusters: 174
In [231]:
!printf "Number of target genomes: "
!cd $workDir; \
tail -n +2 target_taxa.txt | cut -f 3 | sort -u | wc -l
Number of target genomes: 186
In [182]:
# making table of genome file names & genome sequence IDs
p = os.path.join(genomeDir, '*.fasta')
genomeFiles = glob.glob(p)
assert len(genomeFiles) == 1210, 'There should be 1210 genome files'
In [183]:
# Getting seq names in all genome files
fileSeq = {}
cnt = 0
for f in genomeFiles:
fileSeq[f] = []
with open(f, 'rb') as iFH:
for line in iFH:
if line.startswith('>'):
line = line.lstrip('>').rstrip()
fileSeq[f].append(line)
cnt += 1
if cnt % 100 == 0:
sys.stderr.write('Number of files processed: {}\n'.format(cnt))
Number of files processed: 100
Number of files processed: 200
Number of files processed: 300
Number of files processed: 400
Number of files processed: 500
Number of files processed: 600
Number of files processed: 700
Number of files processed: 800
Number of files processed: 900
Number of files processed: 1000
Number of files processed: 1100
Number of files processed: 1200
In [184]:
printDict(fileSeq, n=5)
'/home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Rhizobium_etli_bv_phaseoli_str_IE4803.fasta'
['CP007641_Rhizobium_etli_bv__phaseoli_str__IE4803']
'/home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Prosthecochloris_aestuarii_DSM_271.fasta'
['CP001108_Prosthecochloris_aestuarii_DSM_271']
'/home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Phaeobacter_inhibens_DSM_17395.fasta'
['CP002976_Phaeobacter_inhibens_DSM_17395']
'/home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Paludibacter_propionicigenes_WB4.fasta'
['CP002345_Paludibacter_propionicigenes_WB4']
'/home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Thermodesulfobacterium_geofontis_OPF15.fasta'
['CP002829_Thermodesulfobacterium_geofontis_OPF15']
In [186]:
outFile = os.path.join(workDir, 'genomeFile_seqID.txt')
with open(outFile, 'wb') as oFH:
for f,seqIDs in fileSeq.items():
for seqID in seqIDs:
line = '\t'.join([seqID, f])
oFH.write(line + '\n')
In [187]:
%%bash -s "$workDir"
cd $1
grep -f <(tail -n +2 target_taxa.txt| cut -f 3) genomeFile_seqID.txt > genomeFile_seqID_filt.txt
printf "Number of genomes in filtered list: "
wc -l genomeFile_seqID_filt.txt
Number of genomes in filtered list: 360 genomeFile_seqID_filt.txt
In [196]:
x,y = os.path.split(workDir)
newGenomeDir = os.path.join(x, 'genomes')
if os.path.isdir(newGenomeDir):
p = os.path.join(newGenomeDir, '*')
files = glob.glob(p)
for f in files:
os.unlink(f)
os.rmdir(newGenomeDir)
os.makedirs(newGenomeDir)
In [197]:
inFile = os.path.join(workDir, 'genomeFile_seqID_filt.txt')
exts = ['.fasta','.fasta.2bit','.fasta.flat','.fasta.gdx','.fasta.sqlite3.db','.fasta.uni']
with open(inFile, 'rb') as iFH:
for line in iFH:
seqID,fastaFile = line.rstrip().split('\t')
assert os.path.isfile(fastaFile), '"{}" not found'.format(fastaFile)
base,ext = os.path.splitext(fastaFile)
path,fileBase = os.path.split(base)
newBase = os.path.join(newGenomeDir, fileBase)
for x in exts:
if not os.path.islink(newBase + x):
os.symlink(base + '.fasta', newBase + x)
In [198]:
!printf "Number of fasta files in genomes dir: "
!cd $newGenomeDir; \
ls *fasta | wc -l
Number of fasta files in genomes dir: 336
In [ ]:
In [93]:
taxonMapFile = os.path.join(workDir, 'target_taxa.txt')
genomeFilterFile = os.path.join(workDir, 'genomeFile_seqID_filt.txt')
abundFile = os.path.join(workDir, '../exp_info', 'bulk_OTU_abund_stats.txt')
In [96]:
%%R -i taxonMapFile -i abundFile -i genomeFilterFile
taxonMap = read.delim(taxonMapFile, sep='\t') %>%
select(target_genome, OTU)
taxonMap %>% nrow %>% print
taxonMap %>% head(n=3) %>% print
message('----------------')
genomeFilter = read.delim(genomeFilterFile, sep='\t', header=F)
genomeFilter %>% nrow %>% print
genomeFilter %>% head(n=3) %>% print
message('----------------')
abund = read.delim(abundFile, sep='\t')
abund %>% nrow %>% print
abund %>% head(n=3) %>% print
[1] 1817
target_genome OTU
1 CP003093_Pseudoxanthomonas_spadix_BD_a59 OTU.77
2 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.2347
3 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.1364
----------------
[1] 329
V1
1 CP007641_Rhizobium_etli_bv__phaseoli_str__IE4803
2 CP003093_Pseudoxanthomonas_spadix_BD_a59
3 CP001918_Enterobacter_cloacae_subsp__cloacae_ATCC_13047
V2
1 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Rhizobium_etli_bv_phaseoli_str_IE4803.fasta
2 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Pseudoxanthomonas_spadix_BD-a59.fasta
3 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Enterobacter_cloacae_subsp_cloacae_ATCC_13047.fasta
----------------
[1] 5695
OTUId total_count mean_count median_count sd_count
1 OTU.1 2084 160.3076923 87 166.997198
2 OTU.10 11 0.8461538 0 1.344504
3 OTU.100 608 46.7692308 28 52.800180
In [97]:
%%R
tbl.j = inner_join(taxonMap, genomeFilter, c('target_genome' = 'V1'))
tbl.j %>% nrow %>% print
tbl.j %>% head
[1] 1638
target_genome OTU
1 CP003093_Pseudoxanthomonas_spadix_BD_a59 OTU.77
2 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.2347
3 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.1364
4 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.3475
5 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.388
6 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.1147
V2
1 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Pseudoxanthomonas_spadix_BD-a59.fasta
2 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
3 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
4 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
5 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
6 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
In [98]:
%%R
tbl.j2 = inner_join(tbl.j, abund, c('OTU' = 'OTUId'))
tbl.j2 %>% nrow %>% print
tbl.j2 %>% head
[1] 1638
target_genome OTU
1 CP003093_Pseudoxanthomonas_spadix_BD_a59 OTU.77
2 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.2347
3 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.1364
4 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.3475
5 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.388
6 CP002162_Micromonospora_aurantiaca_ATCC_27029 OTU.1147
V2
1 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Pseudoxanthomonas_spadix_BD-a59.fasta
2 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
3 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
4 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
5 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
6 /home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/Micromonospora_aurantiaca_ATCC_27029.fasta
total_count mean_count median_count sd_count
1 40 3.0769231 1 3.546396
2 36 2.7692308 2 2.650593
3 19 1.4615385 1 1.941451
4 7 0.5384615 0 1.126601
5 61 4.6923077 2 7.398025
6 36 2.7692308 2 3.166329
In [101]:
%%R -i workDir
outFile = paste(c(workDir, 'taxa_bulk-comm_abunds.txt'), collapse='/')
write.table(tbl.j2, outFile, sep='\t', quote=F, row.names=F)
In [103]:
!cd $workDir; \
tail -n +2 taxa_bulk-comm_abunds.txt | cut -f 2,3 > ../genomes/genome_index_bulkSoil_OTU.txt
In [ ]:
Content source: nick-youngblut/SIPSim
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