Jupyter Notebooks for Reproducible Research

Housekeeping

  1. Ask questions at any time
  2. Use the sticky note for:
    • Red: I want help
    • Blue: All is good

Quick Poll

  • Have you used Jupyter notebooks before?
  • Are you familiar with markdown syntax?

What is a Jupyter notebook?

  • Interactive environment for running code
  • A way to mix text (markdown) and code
  • A way to create reports
  • A way to share samples and code snippets
  • A dynamic way of teaching

Quick demo

In today's session

Item Topic Start time Duration
Welcome 13:00 10
1 History and perspective 13:10 10
2 How does Jupyter work? 13:20 10
3 Working with notebooks, using image example 13:30 30
4 Notebooks and reproducible research 14:00 15
---- BREAK --- 14:15 15
5 Lab - image analysis 14:30 45
6 Jupyter Notebooks in the Azure Cloud 15:15 15
7 Teaching concepts with notebooks 15:30 15
8 Wrap up 15:45 15
--- Session ends --- 16:00

Log in to your notebook environment

You should have:

In a browser (preferably chrome), navigate to the URL.

Log in using your ID and password

Logging in

Success?

Can you log in to the environment?

  • Use a blue sticky to indicate yes
  • Use a red sticky to indicate no

Let's gets started!