In [8]:

    

import pandas as pd
import scipy as sp
from scipy import stats
import pymc
import matplotlib as mpl
import matplotlib.pyplot as plt
%matplotlib inline
%config InlineBackend.figure_format = 'svg'
exec(open('../settings.py').read(), globals())


    

In [2]:

    

switchpoint = -200
space = sp.arange(-500, 500, 1)

l = 12.0

SOX2 = 35 * sp.ones(len(space)) / l
SOX2[ space > switchpoint ] = 30 / l
#SOX2const = 32 * sp.ones(len(space))

GF = 0.8 * sp.ones(len(space))
GF[ space > switchpoint ] = 0.95
#GFconst = 0.85 * sp.ones(len(space))

mi = 0.03 * sp.ones(len(space))
mi[ space > switchpoint ] = 0.06
#miconst = 0.05 * sp.ones(len(space))


    

In [3]:

    

fig, ax = plt.subplots(2, figsize = (3.0, 1.5), sharex=True)

for a in ax:
    a.spines['right'].set_color('none')
    a.spines['top'].set_color('none')
    a.yaxis.set_ticks_position('left')
    a.xaxis.set_ticks_position('bottom')
    a.set_xticks([])
    a.set_yticks([])
    

ax[0].set_ylim([0.75, 1.0])
ax[0].set_ylabel('growth\nfraction')

ax[0].plot(space, GF, 'k')

ax[1].set_ylim([0.02, 0.07])
ax[1].set_xlabel('AP position')
ax[1].set_ylabel('mitotic\nindex')

ax[1].plot(space, mi, 'k')

plt.show()


    

In [4]:

    

plt.xkcd()

mpl.rcParams['axes.labelsize'] = 8
mpl.rcParams['xtick.labelsize'] = 8
mpl.rcParams['ytick.labelsize'] = 8
mpl.rcParams['legend.fontsize'] = 8

mpl.rcParams['text.usetex'] = False

mpl.rcParams['svg.fonttype'] = 'none'


    

In [5]:

    

fig, ax = plt.subplots(2, figsize = (3.0, 1.5), sharex=True)

for a in ax:
    a.spines['right'].set_color('none')
    a.spines['top'].set_color('none')
    a.yaxis.set_ticks_position('left')
    a.xaxis.set_ticks_position('bottom')
    a.set_xticks([])
    a.set_yticks([])
    

ax[0].set_ylim([0.75, 1.0])
ax[0].set_ylabel('growth\nfraction')

ax[0].plot(space, GF, 'k')

ax[1].set_ylim([0.02, 0.07])
ax[1].set_xlabel('AP position')
ax[1].set_ylabel('mitotic\nindex')

ax[1].plot(space, mi, 'k')

plt.show()


    

In [6]:

    

plt.xkcd()

mpl.rcParams['axes.labelsize'] = 8
mpl.rcParams['xtick.labelsize'] = 8
mpl.rcParams['ytick.labelsize'] = 8
mpl.rcParams['legend.fontsize'] = 8

mpl.rcParams['text.usetex'] = False

mpl.rcParams['svg.fonttype'] = 'none'

mpl.rcParams['font.family'] = ['Helvetica LT Std']
mpl.rcParams['font.sans-serif'] = ['Helvetica LT Std']
mpl.rcParams['path.effects'] = None


    

In [8]:

    

fig, ax = plt.subplots(2, figsize = (2.0, 1.5), sharex=True)

for a in ax:
    a.spines['right'].set_color('none')
    a.spines['top'].set_color('none')
    a.yaxis.set_ticks_position('left')
    a.xaxis.set_ticks_position('bottom')
    a.set_xticks([])
    a.set_yticks([])
    

ax[0].set_ylim([0.75, 1.0])
ax[0].set_ylabel('growth\nfraction')

ax[0].plot(space, GF, 'k')

ax[1].set_ylim([0.02, 0.07])
ax[1].set_xlabel('AP position')
ax[1].set_ylabel('mitotic\nindex')

ax[1].plot(space, mi, 'k')

plt.savefig('../../figure_plots/Fig2_spatial_model_sketch.svg')
plt.show()


    

In [ ]: