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cd ~/Desktop/SSUsearch/
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mkdir -p ./data
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cd ./data
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!curl -O http://athyra.oxli.org/~gjr/public2/misc/SSUsearch_db.tgz
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!tar -xzvf SSUsearch_db.tgz
In [9]:
!wget http://athyra.oxli.org/~gjr/public2/misc/SSUsearch/test.tgz
!tar -xzvf test.tgz
In [10]:
ls test/data/
For quality trimming, we recommend trimmomatic written in java, or fastq-mcf written in C.
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