Most of the time you won't want to train a whole convolutional network yourself. Modern ConvNets training on huge datasets like ImageNet take weeks on multiple GPUs. Instead, most people use a pretrained network either as a fixed feature extractor, or as an initial network to fine tune. In this notebook, you'll be using VGGNet trained on the ImageNet dataset as a feature extractor. Below is a diagram of the VGGNet architecture.
VGGNet is great because it's simple and has great performance, coming in second in the ImageNet competition. The idea here is that we keep all the convolutional layers, but replace the final fully connected layers with our own classifier. This way we can use VGGNet as a feature extractor for our images then easily train a simple classifier on top of that. What we'll do is take the first fully connected layer with 4096 units, including thresholding with ReLUs. We can use those values as a code for each image, then build a classifier on top of those codes.
You can read more about transfer learning from the CS231n course notes.
We'll be using a pretrained network from https://github.com/machrisaa/tensorflow-vgg. Make sure to clone this repository to the directory you're working from. You'll also want to rename it so it has an underscore instead of a dash.
git clone https://github.com/machrisaa/tensorflow-vgg.git tensorflow_vggThis is a really nice implementation of VGGNet, quite easy to work with. The network has already been trained and the parameters are available from this link. You'll need to clone the repo into the folder containing this notebook. Then download the parameter file using the next cell.
In [1]:
from urllib.request import urlretrieve
from os.path import isfile, isdir
from tqdm import tqdm
vgg_dir = 'tensorflow_vgg/'
# Make sure vgg exists
if not isdir(vgg_dir):
raise Exception("VGG directory doesn't exist!")
class DLProgress(tqdm):
last_block = 0
def hook(self, block_num=1, block_size=1, total_size=None):
self.total = total_size
self.update((block_num - self.last_block) * block_size)
self.last_block = block_num
if not isfile(vgg_dir + "vgg16.npy"):
with DLProgress(unit='B', unit_scale=True, miniters=1, desc='VGG16 Parameters') as pbar:
urlretrieve(
'https://s3.amazonaws.com/content.udacity-data.com/nd101/vgg16.npy',
vgg_dir + 'vgg16.npy',
pbar.hook)
else:
print("Parameter file already exists!")
Here we'll be using VGGNet to classify images of flowers. To get the flower dataset, run the cell below. This dataset comes from the TensorFlow inception tutorial.
In [2]:
import tarfile
dataset_folder_path = 'flower_photos'
class DLProgress(tqdm):
last_block = 0
def hook(self, block_num=1, block_size=1, total_size=None):
self.total = total_size
self.update((block_num - self.last_block) * block_size)
self.last_block = block_num
if not isfile('flower_photos.tar.gz'):
with DLProgress(unit='B', unit_scale=True, miniters=1, desc='Flowers Dataset') as pbar:
urlretrieve(
'http://download.tensorflow.org/example_images/flower_photos.tgz',
'flower_photos.tar.gz',
pbar.hook)
if not isdir(dataset_folder_path):
with tarfile.open('flower_photos.tar.gz') as tar:
tar.extractall()
tar.close()
Below, we'll run through all the images in our dataset and get codes for each of them. That is, we'll run the images through the VGGNet convolutional layers and record the values of the first fully connected layer. We can then write these to a file for later when we build our own classifier.
Here we're using the vgg16 module from tensorflow_vgg. The network takes images of size $224 \times 224 \times 3$ as input. Then it has 5 sets of convolutional layers. The network implemented here has this structure (copied from the source code):
self.conv1_1 = self.conv_layer(bgr, "conv1_1")
self.conv1_2 = self.conv_layer(self.conv1_1, "conv1_2")
self.pool1 = self.max_pool(self.conv1_2, 'pool1')
self.conv2_1 = self.conv_layer(self.pool1, "conv2_1")
self.conv2_2 = self.conv_layer(self.conv2_1, "conv2_2")
self.pool2 = self.max_pool(self.conv2_2, 'pool2')
self.conv3_1 = self.conv_layer(self.pool2, "conv3_1")
self.conv3_2 = self.conv_layer(self.conv3_1, "conv3_2")
self.conv3_3 = self.conv_layer(self.conv3_2, "conv3_3")
self.pool3 = self.max_pool(self.conv3_3, 'pool3')
self.conv4_1 = self.conv_layer(self.pool3, "conv4_1")
self.conv4_2 = self.conv_layer(self.conv4_1, "conv4_2")
self.conv4_3 = self.conv_layer(self.conv4_2, "conv4_3")
self.pool4 = self.max_pool(self.conv4_3, 'pool4')
self.conv5_1 = self.conv_layer(self.pool4, "conv5_1")
self.conv5_2 = self.conv_layer(self.conv5_1, "conv5_2")
self.conv5_3 = self.conv_layer(self.conv5_2, "conv5_3")
self.pool5 = self.max_pool(self.conv5_3, 'pool5')
self.fc6 = self.fc_layer(self.pool5, "fc6")
self.relu6 = tf.nn.relu(self.fc6)So what we want are the values of the first fully connected layer, after being ReLUd (self.relu6).
In [3]:
import os
import numpy as np
import tensorflow as tf
from tensorflow_vgg import vgg16
from tensorflow_vgg import utils
In [4]:
data_dir = 'flower_photos/'
contents = os.listdir(data_dir)
classes = [each for each in contents if os.path.isdir(data_dir + each)]
Below I'm running images through the VGG network in batches.
In [5]:
# Set the batch size higher if you can fit in in your GPU memory
batch_size = 100
codes_list = []
labels = []
batch = []
codes = None
vgg = vgg16.Vgg16()
input_ = tf.placeholder(tf.float32, [None, 224, 224, 3])
with tf.name_scope("content_vgg"):
vgg.build(input_)
with tf.Session() as sess:
for each in classes:
print("Starting {} images".format(each))
class_path = data_dir + each
files = os.listdir(class_path)
for ii, file in enumerate(files, 1):
# Add images to the current batch
# utils.load_image crops the input images for us, from the center
img = utils.load_image(os.path.join(class_path, file))
batch.append(img.reshape((1, 224, 224, 3)))
labels.append(each)
# Running the batch through the network to get the codes
if ii % batch_size == 0 or ii == len(files):
# Image batch to pass to VGG network
images = np.concatenate(batch)
feed_dict = {input_: images}
codes_batch = sess.run(vgg.relu6, feed_dict=feed_dict)
# Here I'm building an array of the codes
if codes is None:
codes = codes_batch
else:
codes = np.concatenate((codes, codes_batch))
# Reset to start building the next batch
batch = []
print('{} images processed'.format(ii))
In [6]:
# write codes to file
with open('codes', 'w') as f:
codes.tofile(f)
# write labels to file
import csv
with open('labels', 'w') as f:
writer = csv.writer(f, delimiter='\n')
writer.writerow(labels)
In [7]:
# read codes and labels from file
import csv
with open('labels') as f:
reader = csv.reader(f, delimiter='\n')
labels = np.array([each for each in reader if len(each) > 0]).squeeze()
with open('codes') as f:
codes = np.fromfile(f, dtype=np.float32)
codes = codes.reshape((len(labels), -1))
As usual, now we need to one-hot encode our labels and create validation/test sets. First up, creating our labels!
From scikit-learn, use LabelBinarizer to create one-hot encoded vectors from the labels.
In [8]:
from sklearn.preprocessing import LabelBinarizer
lb = LabelBinarizer()
lb.fit(labels)
labels_vecs = lb.transform(labels)
labels_vecs
Out[8]:
Now you'll want to create your training, validation, and test sets. An important thing to note here is that our labels and data aren't randomized yet. We'll want to shuffle our data so the validation and test sets contain data from all classes. Otherwise, you could end up with testing sets that are all one class. Typically, you'll also want to make sure that each smaller set has the same the distribution of classes as it is for the whole data set. The easiest way to accomplish both these goals is to use StratifiedShuffleSplit from scikit-learn.
You can create the splitter like so:
ss = StratifiedShuffleSplit(n_splits=1, test_size=0.2)Then split the data with
splitter = ss.split(x, y)ss.split returns a generator of indices. You can pass the indices into the arrays to get the split sets. The fact that it's a generator means you either need to iterate over it, or use next(splitter) to get the indices.
In [9]:
from sklearn.model_selection import StratifiedShuffleSplit
sss = StratifiedShuffleSplit(n_splits=1, test_size=0.2, random_state=0)
for train_index, test_index in sss.split(codes, labels_vecs):
train_x, rest_x = codes[train_index], codes[test_index]
train_y, rest_y = labels_vecs[train_index], labels_vecs[test_index]
sss = StratifiedShuffleSplit(n_splits=1, test_size=0.5, random_state=0)
for train_index, test_index in sss.split(rest_x, rest_y):
val_x, test_x = rest_x[train_index], rest_x[test_index]
val_y, test_y = rest_y[train_index], rest_y[test_index]
In [10]:
print("Train shapes (x, y):", train_x.shape, train_y.shape)
print("Validation shapes (x, y):", val_x.shape, val_y.shape)
print("Test shapes (x, y):", test_x.shape, test_y.shape)
Once you have the convolutional codes, you just need to build a classfier from some fully connected layers. You use the codes as the inputs and the image labels as targets. Otherwise the classifier is a typical neural network.
Exercise: With the codes and labels loaded, build the classifier. Consider the codes as your inputs, each of them are 4096D vectors. You'll want to use a hidden layer and an output layer as your classifier. Remember that the output layer needs to have one unit for each class and a softmax activation function. Use the cross entropy to calculate the cost.
In [11]:
from tensorflow import layers
In [12]:
inputs_ = tf.placeholder(tf.float32, shape=[None, codes.shape[1]])
labels_ = tf.placeholder(tf.int64, shape=[None, labels_vecs.shape[1]])
fc = tf.layers.dense(inputs_, 2000, activation=tf.nn.relu)
logits = tf.layers.dense(fc, labels_vecs.shape[1], activation=None)
cost = tf.reduce_sum(tf.nn.softmax_cross_entropy_with_logits(labels=labels_,
logits=logits))
optimizer = tf.train.AdamOptimizer(learning_rate=0.0001).minimize(cost)
# Operations for validation/test accuracy
predicted = tf.nn.softmax(logits)
correct_pred = tf.equal(tf.argmax(predicted, 1), tf.argmax(labels_, 1))
accuracy = tf.reduce_mean(tf.cast(correct_pred, tf.float32))
In [13]:
def get_batches(x, y, n_batches=10):
""" Return a generator that yields batches from arrays x and y. """
batch_size = len(x)//n_batches
for ii in range(0, n_batches*batch_size, batch_size):
# If we're not on the last batch, grab data with size batch_size
if ii != (n_batches-1)*batch_size:
X, Y = x[ii: ii+batch_size], y[ii: ii+batch_size]
# On the last batch, grab the rest of the data
else:
X, Y = x[ii:], y[ii:]
# I love generators
yield X, Y
In [14]:
epochs = 10
batches = 100
saver = tf.train.Saver()
with tf.Session() as sess:
sess.run(tf.global_variables_initializer())
for e in range(epochs):
b = 0
for x, y in get_batches(train_x, train_y, batches):
feed = {inputs_: x,
labels_: y}
batch_cost, _ = sess.run([cost, optimizer], feed_dict=feed)
print("Epoch: {}/{} ".format(e+1, epochs),
"Batch: {}/{} ".format(b+1, batches),
"Training loss: {:.4f}".format(batch_cost))
b += 1
saver.save(sess, "checkpoints/flowers.ckpt")
In [15]:
with tf.Session() as sess:
saver.restore(sess, tf.train.latest_checkpoint('checkpoints'))
feed = {inputs_: test_x,
labels_: test_y}
test_acc = sess.run(accuracy, feed_dict=feed)
print("Test accuracy: {:.4f}".format(test_acc))
In [16]:
%matplotlib inline
import matplotlib.pyplot as plt
from scipy.ndimage import imread
Below, feel free to choose images and see how the trained classifier predicts the flowers in them.
In [17]:
test_img_path = 'flower_photos/daisy/144603918_b9de002f60_m.jpg'
test_img = imread(test_img_path)
plt.imshow(test_img)
Out[17]:
In [18]:
# Run this cell if you don't have a vgg graph built
if 'vgg' in globals():
print('"vgg" object already exists. Will not create again.')
else:
#create vgg
with tf.Session() as sess:
input_ = tf.placeholder(tf.float32, [None, 224, 224, 3])
vgg = vgg16.Vgg16()
vgg.build(input_)
In [19]:
batch = []
with tf.Session() as sess:
img = utils.load_image(test_img_path)
batch.append(img.reshape((1, 224, 224, 3)))
images = np.concatenate(batch)
feed_dict = {input_: images}
code = sess.run(vgg.relu6, feed_dict=feed_dict)
saver = tf.train.Saver()
with tf.Session() as sess:
saver.restore(sess, tf.train.latest_checkpoint('checkpoints'))
feed = {inputs_: code}
prediction = sess.run(predicted, feed_dict=feed).squeeze()
In [20]:
plt.imshow(test_img)
Out[20]:
In [21]:
plt.barh(np.arange(5), prediction)
_ = plt.yticks(np.arange(5), lb.classes_)
In [25]:
data_dir = 'flower_photos/'
contents = os.listdir(data_dir)
classes = [each for each in contents if os.path.isdir(data_dir + each)]
with tf.Session() as sess:
saver = tf.train.Saver()
with tf.Session() as sess2:
saver.restore(sess2, tf.train.latest_checkpoint('checkpoints'))
for each in classes:
print("Starting {} images".format(each))
class_path = data_dir + each
files = os.listdir(class_path)
for file in files:
batch = []
labels = []
img = utils.load_image(os.path.join(class_path, file))
batch.append(img.reshape((1, 224, 224, 3)))
labels.append(lb.transform([each])[0])
images = np.concatenate(batch)
feed_dict = {input_: images}
code = sess.run(vgg.relu6, feed_dict=feed_dict)
feed = {inputs_: code, labels_: labels}
correct, prediction = sess2.run([correct_pred, predicted], feed_dict=feed)
if not correct[0]:
#test_img = imread(os.path.join(class_path, file))
#plt.imshow(test_img)
#plt.barh(np.arange(5), prediction)
#_ = plt.yticks(np.arange(5), lb.classes_)
print(os.path.join(class_path, file))
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