Jupyter notebook HOWTO

Though not a requirement, learning to use the main killer-feature of Jupyter notebooks is strongly recommended: documenting code with textual blocks.

Style guide

Using Markdown syntax to make your textual (comment) cells in a notebook 'pretty' is easy.

By default, cells in a notebook are Code Cell Type: they are indicated by the 'In [ ]:'-symbol to the left. In a Python notebook, you write Python code in them and execute with one of the following:

  • Shift-Enter (execute, jump to next cell)
  • Control-Enter (execute, stay at current cell)
  • Alt-Enter (execute, add a new cell below and jump to it)

To change the cell to Markdown Cell Type, select Commands -> Notebook cell operations -> Change to Markdown Cell Type, or select a cell by clicking in the left margin and hit the m-key (hit y to convert back to a a code cell).

For a heading highlighting, use the following syntax:

# First-level heading

Some normal text here

## Second-level heading A

More text

## Second-level heading B

More text still. And if you really want to get flashy, use bulleted lists:

* top level bullet
     * for nested bullets
     * simply add 4 spaces to the beginning of the line
* and back to the top level we go

Then hit Shift-Enter to execute the cell and 'render' the Markdown code into a pleasant-looking document.

Editing Markdown cells

Simply double-click on the text-cell you wish to edit, hit Shift-Enter when done.

Finding help

When you get errors, or do not know/cannot remember how to use a function, use the built-in help functionality of (i)Python. Into a code cell, write the name of the function you wish to use, add a question mark (?) after it, and execute the cell. Try it here for the function open we'll use to access files:


In [1]:
open?


Signature: open(file, mode='r', buffering=-1, encoding=None, errors=None, newline=None, closefd=True, opener=None)
Docstring:
Open file and return a stream.  Raise IOError upon failure.

file is either a text or byte string giving the name (and the path
if the file isn't in the current working directory) of the file to
be opened or an integer file descriptor of the file to be
wrapped. (If a file descriptor is given, it is closed when the
returned I/O object is closed, unless closefd is set to False.)

mode is an optional string that specifies the mode in which the file
is opened. It defaults to 'r' which means open for reading in text
mode.  Other common values are 'w' for writing (truncating the file if
it already exists), 'x' for creating and writing to a new file, and
'a' for appending (which on some Unix systems, means that all writes
append to the end of the file regardless of the current seek position).
In text mode, if encoding is not specified the encoding used is platform
dependent: locale.getpreferredencoding(False) is called to get the
current locale encoding. (For reading and writing raw bytes use binary
mode and leave encoding unspecified.) The available modes are:

========= ===============================================================
Character Meaning
--------- ---------------------------------------------------------------
'r'       open for reading (default)
'w'       open for writing, truncating the file first
'x'       create a new file and open it for writing
'a'       open for writing, appending to the end of the file if it exists
'b'       binary mode
't'       text mode (default)
'+'       open a disk file for updating (reading and writing)
'U'       universal newline mode (deprecated)
========= ===============================================================

The default mode is 'rt' (open for reading text). For binary random
access, the mode 'w+b' opens and truncates the file to 0 bytes, while
'r+b' opens the file without truncation. The 'x' mode implies 'w' and
raises an `FileExistsError` if the file already exists.

Python distinguishes between files opened in binary and text modes,
even when the underlying operating system doesn't. Files opened in
binary mode (appending 'b' to the mode argument) return contents as
bytes objects without any decoding. In text mode (the default, or when
't' is appended to the mode argument), the contents of the file are
returned as strings, the bytes having been first decoded using a
platform-dependent encoding or using the specified encoding if given.

'U' mode is deprecated and will raise an exception in future versions
of Python.  It has no effect in Python 3.  Use newline to control
universal newlines mode.

buffering is an optional integer used to set the buffering policy.
Pass 0 to switch buffering off (only allowed in binary mode), 1 to select
line buffering (only usable in text mode), and an integer > 1 to indicate
the size of a fixed-size chunk buffer.  When no buffering argument is
given, the default buffering policy works as follows:

* Binary files are buffered in fixed-size chunks; the size of the buffer
  is chosen using a heuristic trying to determine the underlying device's
  "block size" and falling back on `io.DEFAULT_BUFFER_SIZE`.
  On many systems, the buffer will typically be 4096 or 8192 bytes long.

* "Interactive" text files (files for which isatty() returns True)
  use line buffering.  Other text files use the policy described above
  for binary files.

encoding is the name of the encoding used to decode or encode the
file. This should only be used in text mode. The default encoding is
platform dependent, but any encoding supported by Python can be
passed.  See the codecs module for the list of supported encodings.

errors is an optional string that specifies how encoding errors are to
be handled---this argument should not be used in binary mode. Pass
'strict' to raise a ValueError exception if there is an encoding error
(the default of None has the same effect), or pass 'ignore' to ignore
errors. (Note that ignoring encoding errors can lead to data loss.)
See the documentation for codecs.register or run 'help(codecs.Codec)'
for a list of the permitted encoding error strings.

newline controls how universal newlines works (it only applies to text
mode). It can be None, '', '\n', '\r', and '\r\n'.  It works as
follows:

* On input, if newline is None, universal newlines mode is
  enabled. Lines in the input can end in '\n', '\r', or '\r\n', and
  these are translated into '\n' before being returned to the
  caller. If it is '', universal newline mode is enabled, but line
  endings are returned to the caller untranslated. If it has any of
  the other legal values, input lines are only terminated by the given
  string, and the line ending is returned to the caller untranslated.

* On output, if newline is None, any '\n' characters written are
  translated to the system default line separator, os.linesep. If
  newline is '' or '\n', no translation takes place. If newline is any
  of the other legal values, any '\n' characters written are translated
  to the given string.

If closefd is False, the underlying file descriptor will be kept open
when the file is closed. This does not work when a file name is given
and must be True in that case.

A custom opener can be used by passing a callable as *opener*. The
underlying file descriptor for the file object is then obtained by
calling *opener* with (*file*, *flags*). *opener* must return an open
file descriptor (passing os.open as *opener* results in functionality
similar to passing None).

open() returns a file object whose type depends on the mode, and
through which the standard file operations such as reading and writing
are performed. When open() is used to open a file in a text mode ('w',
'r', 'wt', 'rt', etc.), it returns a TextIOWrapper. When used to open
a file in a binary mode, the returned class varies: in read binary
mode, it returns a BufferedReader; in write binary and append binary
modes, it returns a BufferedWriter, and in read/write mode, it returns
a BufferedRandom.

It is also possible to use a string or bytearray as a file for both
reading and writing. For strings StringIO can be used like a file
opened in a text mode, and for bytes a BytesIO can be used like a file
opened in a binary mode.
Type:      builtin_function_or_method