---------------------------------------------------------------------------
KeyboardInterrupt Traceback (most recent call last)
<ipython-input-21-f45631558063> in <module>()
3 out_map_dir='/media/storage/Notebooks2/Debora/results/HindIII/01_mapping/map{0}_r1'.format(r_enz),
4 fastq_path='/media/storage/FASTQs/K562_{0}_1.fastq'.format(r_enz),
----> 5 windows=((1,25), (1,30), (1,40), (1, 75)))
/home/student/.miniconda2/lib/python2.7/site-packages/pytadbit/mapping/full_mapper.pyc in full_mapping(gem_index_path, fastq_path, out_map_dir, r_enz, frag_map, min_seq_len, windows, add_site, clean, get_nread, **kwargs)
435
436 if not skip:
--> 437 gem_mapping(gem_index_path, curr_map, out_map_path, **kwargs)
438 # parse map file to extract not uniquely mapped reads
439 print 'Parsing result...'
/home/student/.miniconda2/lib/python2.7/site-packages/pytadbit/mapping/full_mapper.pyc in gem_mapping(gem_index_path, fastq_path, out_map_path, gem_binary, **kwargs)
328 try:
329 # check_call(gem_cmd, stdout=PIPE, stderr=PIPE)
--> 330 out, err = Popen(gem_cmd, stdout=PIPE, stderr=PIPE).communicate()
331 except CalledProcessError as e:
332 print out
/home/student/.miniconda2/lib/python2.7/subprocess.pyc in communicate(self, input)
477 return (stdout, stderr)
478
--> 479 return self._communicate(input)
480
481
/home/student/.miniconda2/lib/python2.7/subprocess.pyc in _communicate(self, input)
1096
1097 if _has_poll:
-> 1098 stdout, stderr = self._communicate_with_poll(input)
1099 else:
1100 stdout, stderr = self._communicate_with_select(input)
/home/student/.miniconda2/lib/python2.7/subprocess.pyc in _communicate_with_poll(self, input)
1150 while fd2file:
1151 try:
-> 1152 ready = poller.poll()
1153 except select.error, e:
1154 if e.args[0] == errno.EINTR:
KeyboardInterrupt: