This notebook shows how to run mosasaurus to extract spectra from a sample dataset. In this example, there's a small sample dataset of raw LDSS3C images stored in the directory /Users/zkbt/Cosmos/Data/mosaurusexample/data/ut140809. These data come from a transit observation of WASP-94Ab, and contain one of every expected filetype for LDSS3C.
First we create an instrument object for LDSS3C. This contains all the instrument-specific information mosasaurus needs to be aware of (how to calibrate CCD images, what information to pull out of headers, where to find wavelength calibration information, etc...). We can also use it to set up some of the basics for how we should conduct the extraction for this instrument (how big of a subarray to think about for each target, parameters for extraction apertures, is it worth trying to zap cosmic rays?).
In [1]:
%matplotlib auto
# create an instrument with the appropriate settings
from mosasaurus.instruments import LDSS3C
i = LDSS3C(grism='vph-all')
# set up the basic directory structure, where `data/` should be found
path = '/Users/zkbt/Cosmos/Data/mosaurusexample'
i.setupDirectories(path)
# set the extraction defaults
i.extractiondefaults['spatialsubarray'] = 200
i.extractiondefaults['narrowest'] = 4
i.extractiondefaults['widest'] = 20
i.extractiondefaults['numberofapertures'] = 5
i.extractiondefaults['zapcosmics'] = False
# print out a summary of this instrument
i.summarize()
Using matplotlib backend: MacOSX
[ldss3c] Here is a brief summary of ldss3c.
{'_line': inf,
'_mute': False,
'_pithy': False,
'_prefix': ' [ldss3c] ',
'alignmentranges': {'$H\\alpha$': (6425, 6725),
'$H\\beta$': (4750, 5050),
'$H_2O$': (9200, 9700),
'$O_2$ - A': (7500, 7800),
'$O_2$ - B': (6750, 7050),
'Ca triplet': (8450, 8750)},
'arclamps': ['He', 'Ne', 'Ar'],
'baseDirectory': '/Users/zkbt/Cosmos/Data/mosaurusexample',
'binning': 2,
'dataDirectory': '/Users/zkbt/Cosmos/Data/mosaurusexample/data/',
'databottom': 0,
'dataleft': 0,
'dataright': 512,
'datatop': 2048,
'detectorcalibrations': ['dark', 'bias', 'flat'],
'disperser': 'vph-all',
'disperserDataDirectory': '/Users/zkbt/Dropbox/code/python/packages/mosasaurus/data/LDSS3C/vph-all/',
'dispersertype': 'grism',
'extractables': ['science', 'reference'],
'extractionDirectory': '/Users/zkbt/Cosmos/Data/mosaurusexample/extraction/',
'extractiondefaults': {'narrowest': 4,
'numberofapertures': 5,
'skyGap': 2,
'skyWidth': 10,
'spatialsubarray': 200,
'stampwavelengthblueward': inf,
'stampwavelengthredward': inf,
'traceOrder': 2,
'widest': 20,
'zapcosmics': False},
'gains': array([1.72, 1.49]),
'grism': 'vph-all',
'name': 'LDSS3C',
'nametag': 'ldss3c',
'namps': 2,
'observatory': <EarthLocation (1845724.63191578, -5270547.45291484, -3075815.29733416) m>,
'offsetBetweenReferenceAndWavelengthIDs': -1024,
'sitename': 'LCO',
'telescope': 'Magellan',
'uniformwavelengths': array([ 4000, 4001, 4002, ..., 10497, 10498, 10499]),
'wavelength2pixelsFile': '/Users/zkbt/Dropbox/code/python/packages/mosasaurus/data/LDSS3C/vph-all/vph-all_wavelength_identifications.txt',
'wavelengthsFile': '/Users/zkbt/Dropbox/code/python/packages/mosasaurus/data/LDSS3C/vph-all/HeNeAr.txt',
'workingDirectory': '/Users/zkbt/Cosmos/Data/mosaurusexample/working/',
'xsize': 1024,
'ysize': 2048}
In [2]:
# create a target, pulling values from simbad
from mosasaurus.Target import Target
import astropy.units as u
t = Target(starname='WASP-94A', name='WASP-94Ab')
t.summarize()
t.star.summarize()
Created TAP+ (v1.0.1) - Connection:
Host: gea.esac.esa.int
Use HTTPS: False
Port: 80
SSL Port: 443
[star] made <WASP-94A> from SIMBAD
[target] Here is a brief summary of target.
{'_line': inf,
'_mute': False,
'_pithy': False,
'_prefix': ' [target] ',
'name': 'WASP-94Ab',
'nametag': 'target',
'star': <WASP-94A>,
'starname': 'WASP-94A'}
[star] Here is a brief summary of star.
{'_line': inf,
'_mute': False,
'_pithy': False,
'_prefix': ' [star] ',
'attributes': {'V': 10.050000190734863, 'comment': b'F8'},
'icrs': <SkyCoord (ICRS): (ra, dec) in deg
(313.78311, -34.13555306)>,
'name': 'WASP-94A',
'nametag': 'star',
'pmdec': -46.046,
'pmra': 24.868,
'simbadname': "b'WASP-94A'",
'table': <Table masked=True length=1>
MAIN_ID RA DEC ... SP_BIBCODE FLUX_V FLUX_K
"h:m:s" "d:m:s" ... mag mag
object str13 str13 ... object float32 float32
-------- ------------- ------------- ... ------------------- ------- -------
WASP-94A 20 55 07.9464 -34 08 07.991 ... 2014A&A...572A..49N 10.05 8.874}
We create a night object to store information related to this night of observations. It will be connected to a data directory. For this, the night of ut140809, it expects a group of FITS images to be stored inside the base directory in data/ut140809. One thing this a night can do is set up a log of all the files, pulling information from their FITS headers.
In [3]:
# create a night to analyze
from mosasaurus.Night import Night
n = Night('ut140809', instrument=i)
n.createNightlyLog(remake=False)
[night] Creating a log of all files on ut140809.
[night] /Users/zkbt/Cosmos/Data/mosaurusexample/data/ut140809 contains 53 files matching "ccd*c1.fits"
[night] Loaded a log file from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/nightly_log_ut140809.txt.
[night] Loaded a condensed summary from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/nightly_summary_ut140809.txt.
[night] Creating a log of all files on ut140809.
[night] /Users/zkbt/Cosmos/Data/mosaurusexample/data/ut140809 contains 53 files matching "ccd*c1.fits"
[night] Loaded a log file from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/nightly_log_ut140809.txt.
[night] Loaded a condensed summary from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/nightly_summary_ut140809.txt.
In [4]:
# create an observation
from mosasaurus.Observation import Observation
o = Observation(t, i, n)
o.setupFilePrefixes(science=['wasp94'], reference=['wasp94 thru mask'], flat=['flat'])
[observation] loaded a list of [dark] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesfordark.txt
[observation] loaded a list of [bias] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforbias.txt
[observation] loaded a list of [flat] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforflat.txt
[observation] loaded a list of [He] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforHe.txt
[observation] loaded a list of [Ne] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforNe.txt
[observation] loaded a list of [Ar] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforAr.txt
[observation] loaded a list of [science] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforscience.txt
[observation] loaded a list of [reference] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforreference.txt
[headers] loading cube of image headers.
[headers] header timeseries loaded from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/headers.txt
[observation] loaded a list of [dark] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesfordark.txt
[observation] loaded a list of [bias] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforbias.txt
[observation] loaded a list of [flat] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforflat.txt
[observation] loaded a list of [He] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforHe.txt
[observation] loaded a list of [Ne] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforNe.txt
[observation] loaded a list of [Ar] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforAr.txt
[observation] loaded a list of [science] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforscience.txt
[observation] loaded a list of [reference] files from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/files/filesforreference.txt
[headers] loading cube of image headers.
[headers] header timeseries loaded from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/headers.txt
In [ ]:
# create a reducer to analyze this observation
from mosasaurus.Reducer import Reducer
r = Reducer(o, visualize=False)
r.reduce()
[reducer] the reducing mosasaurus is grabbing a fly spanker to analyze
[Observation of <Target WASP-94Ab> with <Spectrograph LDSS3C> on <Night ut140809>]
[calibration] setting up calibrator
[calibration] creating master images for dict_keys(['dark', 'bias', 'flat', 'He', 'Ne', 'Ar', 'science', 'reference'])
[calibration] creating a stacked master image for dark
[calibration] populating the master dark image
[calibration] loaded dark from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_dark.fits
[calibration] creating a stacked master image for bias
[calibration] populating the master bias image
[calibration] loaded bias from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_bias.fits
[calibration] creating a stacked master image for flat
[calibration] populating the master flat image
[calibration] loaded flat from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_flat.fits
[calibration] creating a stacked master image for He
[calibration] populating the master He image
[calibration] loaded He from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_He.fits
[calibration] creating a stacked master image for Ne
[calibration] populating the master Ne image
[calibration] loaded Ne from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_Ne.fits
[calibration] creating a stacked master image for Ar
[calibration] populating the master Ar image
[calibration] loaded Ar from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_Ar.fits
[calibration] creating a stacked master image for science
[calibration] populating the master science image
[calibration] loaded science from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_science.fits
[calibration] creating a stacked master image for reference
[calibration] populating the master reference image
[calibration] loaded reference from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_reference.fits
[calibration] populating bad pixel mask
[calibration] loaded bad pixel mask from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_badpixels.fits
[calibration] calibration data are processed and ready for use
[mask] created a mask, to store extraction regions
[reducer] mosasaurus is ready to reduce
[reducer] starting reductions for [Observation of <Target WASP-94Ab> with <Spectrograph LDSS3C> on <Night ut140809>]
[calibration] creating master images for dict_keys(['dark', 'bias', 'flat', 'He', 'Ne', 'Ar', 'science', 'reference'])
[calibration] creating a stacked master image for dark
[calibration] populating the master dark image
[calibration] loaded dark from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_dark.fits
[calibration] creating a stacked master image for bias
[calibration] populating the master bias image
[calibration] loaded bias from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_bias.fits
[calibration] creating a stacked master image for flat
[calibration] populating the master flat image
[calibration] loaded flat from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_flat.fits
[calibration] creating a stacked master image for He
[calibration] populating the master He image
[calibration] loaded He from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_He.fits
[calibration] creating a stacked master image for Ne
[calibration] populating the master Ne image
[calibration] loaded Ne from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_Ne.fits
[calibration] creating a stacked master image for Ar
[calibration] populating the master Ar image
[calibration] loaded Ar from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_Ar.fits
[calibration] creating a stacked master image for science
[calibration] populating the master science image
[calibration] loaded science from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_science.fits
[calibration] creating a stacked master image for reference
[calibration] populating the master reference image
[calibration] loaded reference from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_reference.fits
[calibration] populating bad pixel mask
[calibration] loaded bad pixel mask from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/calibrations/master_badpixels.fits
[calibration] calibration data are processed and ready for use
[mask] Please should pick the stars you're interested in, then [q]uit.
[loupe] setting up loupe
[loupe]
[loupe] your self.options include:
[loupe] [q]uit
[loupe] move the [c]rosshair, and plot slicey along it
[loupe] nudge the crosshair [up]
[loupe] nudge the crosshair [down]
[loupe] nudge the crosshair [left]
[loupe] nudge the crosshair [right]
[loupe] [a]dd an extraction center
[loupe] [r]estart, clearing all centers
[iplot] waiting for a key to be pressed and released
[iplot] "a" pressed at 1063.3027777777781, 709.6609722222222
[loupe] "a" was pressed
[mask] adding an extraction center at 1063.3, 709.7
[mask] [1063] [709]
[loupe]
[loupe] your self.options include:
[loupe] [q]uit
[loupe] move the [c]rosshair, and plot slicey along it
[loupe] nudge the crosshair [up]
[loupe] nudge the crosshair [down]
[loupe] nudge the crosshair [left]
[loupe] nudge the crosshair [right]
[loupe] [a]dd an extraction center
[loupe] [r]estart, clearing all centers
[iplot] waiting for a key to be pressed and released
[iplot] "a" pressed at 1060.175416666667, 753.4440277777778
[loupe] "a" was pressed
[mask] adding an extraction center at 1060.2, 753.4
[mask] [1063, 1060] [709, 753]
[loupe]
[loupe] your self.options include:
[loupe] [q]uit
[loupe] move the [c]rosshair, and plot slicey along it
[loupe] nudge the crosshair [up]
[loupe] nudge the crosshair [down]
[loupe] nudge the crosshair [left]
[loupe] nudge the crosshair [right]
[loupe] [a]dd an extraction center
[loupe] [r]estart, clearing all centers
[iplot] waiting for a key to be pressed and released
[iplot] "w" pressed at 1060.175416666667, 753.4440277777778
[loupe] "w" was pressed
[loupe] nothing yet defined for [w]
[loupe]
[loupe] your self.options include:
[loupe] [q]uit
[loupe] move the [c]rosshair, and plot slicey along it
[loupe] nudge the crosshair [up]
[loupe] nudge the crosshair [down]
[loupe] nudge the crosshair [left]
[loupe] nudge the crosshair [right]
[loupe] [a]dd an extraction center
[loupe] [r]estart, clearing all centers
[iplot] waiting for a key to be pressed and released
[iplot] "q" pressed at 1710.6665277777784, 834.7554166666666
[loupe] "q" was pressed
[mask] extraction centers are
[mask] x=[709, 753]
[mask] y=[1063, 1060]
[aperture] created a spectroscopic aperture at (709.0, 1063.0)
[aperture] populating calibration stamps
[aperture] cutting them for the first time out of the stitched master images
[aperture] populating calibration stamps with the (s)patial and (w)avelength pixel coordinate images
[aperture] saved calibration stamps to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_709_1063/calibStamps_aperture_709_1063.npy
[aperture] created a spectroscopic aperture at (753.0, 1060.0)
[aperture] populating calibration stamps
[aperture] cutting them for the first time out of the stitched master images
[aperture] populating calibration stamps with the (s)patial and (w)avelength pixel coordinate images
[aperture] saved calibration stamps to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_753_1060/calibStamps_aperture_753_1060.npy
[loupe] setting up loupe
[mask] saved finder chart to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/genericfinderchart.pdf
[mask] looping through all frames and extracting all spectra in them
[mask] making sure all spectra have been extracted
[mask] extracting 2 spectra from image #ccd0006
[aperture] extracting spectrum from image ccd0006
[aperture] populating the trace parameters
[trace] The current aperture sizes are [ 4. 8. 12. 16. 20.].
[trace] trying to load trace parameters from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_709_1063/trace_aperture_709_1063.npy
[trace] interactively creating a new trace
/Users/zkbt/Dropbox/code/python/packages/mosasaurus/mosasaurus/Trace.py:613: RuntimeWarning: invalid value encountered in log
return np.transpose(np.log(self.aperture.images['science']))
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "t" pressed at -374.9805555555554, 3.6008333333332985
[trace] adding trace guess point at (-374.9805555555554, 3.6008333333332985)
[-1063. -835.55555556 -608.11111111 -380.66666667
-153.22222222 74.22222222 301.66666667 529.11111111
756.55555556 984. ]
[3.60083333 3.60083333 3.60083333 3.60083333 3.60083333 3.60083333
3.60083333 3.60083333 3.60083333 3.60083333]
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "t" pressed at 691.4495833333337, 1.162499999999966
[trace] adding trace guess point at (691.4495833333337, 1.162499999999966)
[-1063. -835.55555556 -608.11111111 -380.66666667
-153.22222222 74.22222222 301.66666667 529.11111111
756.55555556 984. ]
[5.17395161 4.65391251 4.13387341 3.61383431 3.09379521 2.57375611
2.05371701 1.53367791 1.01363881 0.49359971]
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 691.4495833333337, 1.162499999999966
/Users/zkbt/anaconda3/envs/mosasaurus/lib/python3.6/site-packages/numpy/core/fromnumeric.py:664: UserWarning: Warning: 'partition' will ignore the 'mask' of the MaskedArray.
a.partition(kth, axis=axis, kind=kind, order=order)
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 691.4495833333337, 1.162499999999966
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "e" pressed at 34.703750000000355, 160.87333333333336
[trace] Please do another "e" again to edit the sky.
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "e" pressed at 112.88777777777818, -187.8083333333334
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "r" pressed at 72.23208333333378, 63.34
[trace] Please do another "r" again to edit the sky.
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "r" pressed at 62.850000000000364, -50.04250000000005
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 62.850000000000364, -50.04250000000005
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 62.850000000000364, -50.04250000000005
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 62.850000000000364, -50.04250000000005
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 62.850000000000364, -50.04250000000005
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "w" pressed at 62.850000000000364, -50.04250000000005
[trace] saved trace parameters to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_709_1063/trace_aperture_709_1063.npy
[trace] saved extraction mask parameters to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_709_1063/extractionmasks_aperture_709_1063.npy
[aperture] creating normalized flat for aperture_709_1063
[loupe] setting up loupe
[loupe]
[loupe] your self.options include:
[loupe] [q]uit
[loupe] move the [c]rosshair, and plot slicey along it
[loupe] nudge the crosshair [up]
[loupe] nudge the crosshair [down]
[loupe] nudge the crosshair [left]
[loupe] nudge the crosshair [right]
[loupe] [a]dd an extraction center
[loupe] [r]estart, clearing all centers
[iplot] waiting for a key to be pressed and released
[iplot] "q" pressed at 931.9536111111113, 219.45
[loupe] "q" was pressed
[aperture] Did you like the NormalizedFlat for this stamp? [Y,n]
[aperture] (please respond)
[aperture] saved normalized flat to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_709_1063/normFlat_aperture_709_1063.pdf
[aperture] saved normalized flat to calibration stamp /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_709_1063/calibStamps_aperture_709_1063.npy
[ccd] read image from science_ccd0006
[mask] set CCD data to science_ccd0006
[aperture] extracting spectrum for width of 4.0
[aperture] estimating a sky background image
/Users/zkbt/Dropbox/code/python/packages/mosasaurus/mosasaurus/Aperture.py:468: RuntimeWarning: invalid value encountered in true_divide
self.extracted[width]['centroid'] = np.sum(weights*self.s, axis=self.sindex)/np.sum(weights, axis=self.sindex)
[aperture] extracting spectrum for width of 8.0
[aperture] estimating a sky background image
[aperture] extracting spectrum for width of 12.0
[aperture] estimating a sky background image
[aperture] extracting spectrum for width of 16.0
[aperture] estimating a sky background image
[aperture] extracting spectrum for width of 20.0
[aperture] estimating a sky background image
[aperture] saved extracted spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_709_1063/extracted_ccd0006.npy
[aperture] extracting spectrum from image ccd0006
[aperture] populating the trace parameters
[trace] The current aperture sizes are [ 4. 8. 12. 16. 20.].
[trace] trying to load trace parameters from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_753_1060/trace_aperture_753_1060.npy
[trace] interactively creating a new trace
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "t" pressed at -334.45222222222196, -4.37279693486596
[trace] adding trace guess point at (-334.45222222222196, -4.37279693486596)
[-1060. -832.55555556 -605.11111111 -377.66666667
-150.22222222 77.22222222 304.66666667 532.11111111
759.55555556 987. ]
[-4.37279693 -4.37279693 -4.37279693 -4.37279693 -4.37279693 -4.37279693
-4.37279693 -4.37279693 -4.37279693 -4.37279693]
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "t" pressed at 463.0248611111115, -0.16877394636020426
[trace] adding trace guess point at (463.0248611111115, -0.16877394636020426)
[-1060. -832.55555556 -605.11111111 -377.66666667
-150.22222222 77.22222222 304.66666667 532.11111111
759.55555556 987. ]
[-8.19763354 -6.9986252 -5.79961686 -4.60060852 -3.40160018 -2.20259184
-1.0035835 0.19542484 1.39443318 2.59344151]
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "e" pressed at 97.12361111111136, 109.13582375478924
[trace] Please do another "e" again to edit the sky.
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "e" pressed at 144.0340277777782, -190.75114942528742
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "r" pressed at 81.48680555555597, 33.463409961685755
[trace] Please do another "r" again to edit the sky.
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "r" pressed at 75.23208333333378, -94.05862068965524
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 75.23208333333378, -94.05862068965524
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 75.23208333333378, -94.05862068965524
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 75.23208333333378, -94.05862068965524
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 75.23208333333378, -94.05862068965524
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "f" pressed at 75.23208333333378, -94.05862068965524
[trace] Please refine the extraction aperture.
[trace] your options include:
[trace] [w]rite and quit
[trace] [q]uit without writing
[trace] move the [c]rosshair, and plot slices along it
[trace] add a guess for a [t]race point
[trace] [e]xtend a sky region (twice for start and stop)
[trace] [r]emove a sky region (twice for start and stop)
[trace] [f]it the trace, using the star's centroids and sky areas
[trace] [s]et the [s]ize of the [s]tar's smallest extraction region
[iplot] waiting for a key to be pressed and released
[iplot] "w" pressed at 75.23208333333378, -94.05862068965524
[trace] saved trace parameters to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_753_1060/trace_aperture_753_1060.npy
[trace] saved extraction mask parameters to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809/WASP-94Ab/extraction_default/aperture_753_1060/extractionmasks_aperture_753_1060.npy
[aperture] creating normalized flat for aperture_753_1060
/Users/zkbt/anaconda3/envs/mosasaurus/lib/python3.6/site-packages/matplotlib/cbook/deprecation.py:107: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
warnings.warn(message, mplDeprecation, stacklevel=1)
[loupe] setting up loupe
[loupe]
[loupe] your self.options include:
[loupe] [q]uit
[loupe] move the [c]rosshair, and plot slicey along it
[loupe] nudge the crosshair [up]
[loupe] nudge the crosshair [down]
[loupe] nudge the crosshair [left]
[loupe] nudge the crosshair [right]
[loupe] [a]dd an extraction center
[loupe] [r]estart, clearing all centers
[iplot] waiting for a key to be pressed and released
[iplot] "q" pressed at None, None
[loupe] "q" was pressed
[aperture] Did you like the NormalizedFlat for this stamp? [Y,n]
In [ ]:
from mosasaurus.Cube import Cube
# create a cube, using 16 pixel apertures
c = Cube(o, width=16)
# define which is the target, and which are comparisons
c.setStars(target='aperture_713_1062', comparisons='aperture_753_1062')
# populate the spectra in the cube, and save it
c.populate(shift=False, max=None)
c.save()
c.imageCube(keys=['raw_counts'], stars=[c.target])
In [7]:
# estimate the required shifts for each exposures
from mosasaurus.WavelengthRecalibrator import WavelengthRecalibrator
wr = WavelengthRecalibrator(c)
# fix up the wavelength calibration for each exposure
r.mask.setup()
r.mask.addWavelengthCalibration(shift=True)
# repopulate the cube
c.populate(shift=True, remake=True)
c.imageCube(keys=['raw_counts'], stars=[c.target])
c.save()
# make movie of the cube
c.movieCube(stride=1, remake=True)
[wavelengthrecalibrator] attempting to load previously saved shifts and stretches from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/spectralstretch.npy
[wavelengthrecalibrator] loading [corrections] from the saved cube structure
[wavelengthrecalibrator] loaded shifts successfully
[mask] Extraction centers were already defined; loading them from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/extractionCenters.txt
[mask] extraction centers are
[mask] x=[753. 713.]
[mask] y=[1062. 1062.]
[aperture] created a spectroscopic aperture at (753.0, 1062.0)
[aperture] populating calibration stamps
[aperture] loaded calibration stamps from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/calibStamps_aperture_753_1062.npy
[aperture] created a spectroscopic aperture at (713.0, 1062.0)
[aperture] populating calibration stamps
[aperture] loaded calibration stamps from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/calibStamps_aperture_713_1062.npy
[mask] creating wavelength calibrators
[aperture] populating wavelength calibration
[wavelengthcalibrator] checking for a custom wavelength-to-pixel file
[wavelengthcalibrator] loaded Aperture-Specific (aperture_753_1062_waveids.txt):
[aperture] extracting spectrum from image He
[aperture] populating the trace parameters
[trace] The current aperture sizes are [ 4. 8. 12. 16. 20.].
[trace] trying to load trace parameters from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/trace_aperture_753_1062.npy
[trace] loaded trace parameters to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/trace_aperture_753_1062.npy
[trace] saved extraction mask parameters to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extractionmasks_aperture_753_1062.npy
[aperture] extracting spectrum for width of 4.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 8.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 12.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 16.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 20.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] saved extracted spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_He.npy
[aperture] extracting spectrum from image Ne
[aperture] extracting spectrum for width of 4.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 8.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 12.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 16.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 20.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] saved extracted spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_Ne.npy
[aperture] extracting spectrum from image Ar
[aperture] extracting spectrum for width of 4.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 8.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 12.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 16.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 20.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] saved extracted spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_Ar.npy
[wavelengthcalibrator] loaded wavelength calibrationfrom /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/aperture_753_1062_wavelengthcalibration.npy
[wavelengthcalibrator] loaded wavelength matches from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/aperture_753_1062_wavelengthmatches.npy
[aperture] populating wavelength calibration
[wavelengthcalibrator] checking for a custom wavelength-to-pixel file
[wavelengthcalibrator] loaded Aperture-Specific (aperture_713_1062_waveids.txt):
[aperture] extracting spectrum from image He
[aperture] populating the trace parameters
[trace] The current aperture sizes are [ 4. 8. 12. 16. 20.].
[trace] trying to load trace parameters from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/trace_aperture_713_1062.npy
[trace] loaded trace parameters to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/trace_aperture_713_1062.npy
[trace] saved extraction mask parameters to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extractionmasks_aperture_713_1062.npy
[aperture] extracting spectrum for width of 4.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 8.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 12.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 16.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 20.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] saved extracted spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_He.npy
[aperture] extracting spectrum from image Ne
[aperture] extracting spectrum for width of 4.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 8.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 12.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 16.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 20.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] saved extracted spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_Ne.npy
[aperture] extracting spectrum from image Ar
[aperture] extracting spectrum for width of 4.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 8.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 12.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 16.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] extracting spectrum for width of 20.0
[aperture] using a Gaussian approximation to the line-spread function (for arc extraction)
[aperture] saved extracted spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_Ar.npy
[wavelengthcalibrator] loaded wavelength calibrationfrom /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/aperture_713_1062_wavelengthcalibration.npy
[wavelengthcalibrator] loaded wavelength matches from /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/aperture_713_1062_wavelengthmatches.npy
[mask] adding wavelength calibrations to all stars (if needed)
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1001.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1001.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1002.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1002.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1003.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1003.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1004.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1004.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1005.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1005.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1006.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1006.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1007.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1007.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1008.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1008.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1009.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1009.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1010.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1010.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1011.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1011.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1012.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1012.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1013.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1013.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1014.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1014.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1015.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1015.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1016.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1016.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1017.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1017.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1018.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1018.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1019.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1019.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1020.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1020.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1021.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1021.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1022.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1022.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1023.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1023.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1024.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1024.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1025.npy already exists
[aperture] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1025.npy already exists
[cube] Loading the spectral cube.
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1001.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1001.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1001.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][0,:]
[cube] (raw_counts sum to 193603826.6689453 for ccd1001)
[cube] updating cubes['sky']['aperture_713_1062'][0,:]
[cube] updating cubes['centroid']['aperture_713_1062'][0,:]
[cube] updating cubes['width']['aperture_713_1062'][0,:]
[cube] updating cubes['peak']['aperture_713_1062'][0,:]
[cube] updating cubes['ok']['aperture_713_1062'][0,:]
[cube] updating squares['sky']['aperture_713_1062'][0] = 27855.671875
[cube] updating squares['width']['aperture_713_1062'][0] = 2.8634860515594482
[cube] updating squares['centroid']['aperture_713_1062'][0] = -1.187458872795105
[cube] updating squares['shift']['aperture_713_1062'][0] = 0.9818964600563049
[cube] updating squares['stretch']['aperture_713_1062'][0] = -8.934202924137935e-06
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1001.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1001.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1001.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][0,:]
[cube] (raw_counts sum to 137847778.05529785 for ccd1001)
[cube] updating cubes['sky']['aperture_753_1062'][0,:]
[cube] updating cubes['centroid']['aperture_753_1062'][0,:]
[cube] updating cubes['width']['aperture_753_1062'][0,:]
[cube] updating cubes['peak']['aperture_753_1062'][0,:]
[cube] updating cubes['ok']['aperture_753_1062'][0,:]
[cube] updating squares['sky']['aperture_753_1062'][0] = 27954.537109375
[cube] updating squares['width']['aperture_753_1062'][0] = 2.8608558177948
[cube] updating squares['centroid']['aperture_753_1062'][0] = -0.975557804107666
[cube] updating squares['shift']['aperture_753_1062'][0] = -0.010749501176178455
[cube] updating squares['stretch']['aperture_753_1062'][0] = -9.033612877829e-05
[cube] 0/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1002.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1002.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1002.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][1,:]
[cube] (raw_counts sum to 193597062.1665039 for ccd1002)
[cube] updating cubes['sky']['aperture_713_1062'][1,:]
[cube] updating cubes['centroid']['aperture_713_1062'][1,:]
[cube] updating cubes['width']['aperture_713_1062'][1,:]
[cube] updating cubes['peak']['aperture_713_1062'][1,:]
[cube] updating cubes['ok']['aperture_713_1062'][1,:]
[cube] updating squares['sky']['aperture_713_1062'][1] = 26825.396484375
[cube] updating squares['width']['aperture_713_1062'][1] = 3.2973532676696777
[cube] updating squares['centroid']['aperture_713_1062'][1] = -1.7804304361343384
[cube] updating squares['shift']['aperture_713_1062'][1] = 0.3854445815086365
[cube] updating squares['stretch']['aperture_713_1062'][1] = 0.00010453262075316161
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1002.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1002.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1002.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][1,:]
[cube] (raw_counts sum to 137766209.43933105 for ccd1002)
[cube] updating cubes['sky']['aperture_753_1062'][1,:]
[cube] updating cubes['centroid']['aperture_753_1062'][1,:]
[cube] updating cubes['width']['aperture_753_1062'][1,:]
[cube] updating cubes['peak']['aperture_753_1062'][1,:]
[cube] updating cubes['ok']['aperture_753_1062'][1,:]
[cube] updating squares['sky']['aperture_753_1062'][1] = 26991.857421875
[cube] updating squares['width']['aperture_753_1062'][1] = 3.2995712757110596
[cube] updating squares['centroid']['aperture_753_1062'][1] = -1.6105902194976807
[cube] updating squares['shift']['aperture_753_1062'][1] = -0.32986682653427124
[cube] updating squares['stretch']['aperture_753_1062'][1] = -3.704779373947531e-05
[cube] 1/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1003.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1003.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1003.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][2,:]
[cube] (raw_counts sum to 194773800.24328613 for ccd1003)
[cube] updating cubes['sky']['aperture_713_1062'][2,:]
[cube] updating cubes['centroid']['aperture_713_1062'][2,:]
[cube] updating cubes['width']['aperture_713_1062'][2,:]
[cube] updating cubes['peak']['aperture_713_1062'][2,:]
[cube] updating cubes['ok']['aperture_713_1062'][2,:]
[cube] updating squares['sky']['aperture_713_1062'][2] = 26807.130859375
[cube] updating squares['width']['aperture_713_1062'][2] = 3.45893931388855
[cube] updating squares['centroid']['aperture_713_1062'][2] = -1.9415448904037476
[cube] updating squares['shift']['aperture_713_1062'][2] = 1.9647235870361328
[cube] updating squares['stretch']['aperture_713_1062'][2] = -0.00012305103882681578
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1003.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1003.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1003.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][2,:]
[cube] (raw_counts sum to 138628534.77026367 for ccd1003)
[cube] updating cubes['sky']['aperture_753_1062'][2,:]
[cube] updating cubes['centroid']['aperture_753_1062'][2,:]
[cube] updating cubes['width']['aperture_753_1062'][2,:]
[cube] updating cubes['peak']['aperture_753_1062'][2,:]
[cube] updating cubes['ok']['aperture_753_1062'][2,:]
[cube] updating squares['sky']['aperture_753_1062'][2] = 26850.775390625
[cube] updating squares['width']['aperture_753_1062'][2] = 3.461249828338623
[cube] updating squares['centroid']['aperture_753_1062'][2] = -1.7372301816940308
[cube] updating squares['shift']['aperture_753_1062'][2] = 0.960598886013031
[cube] updating squares['stretch']['aperture_753_1062'][2] = -0.0002274494618177414
[cube] 2/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1004.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1004.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1004.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][3,:]
[cube] (raw_counts sum to 194755747.62231445 for ccd1004)
[cube] updating cubes['sky']['aperture_713_1062'][3,:]
[cube] updating cubes['centroid']['aperture_713_1062'][3,:]
[cube] updating cubes['width']['aperture_713_1062'][3,:]
[cube] updating cubes['peak']['aperture_713_1062'][3,:]
[cube] updating cubes['ok']['aperture_713_1062'][3,:]
[cube] updating squares['sky']['aperture_713_1062'][3] = 26527.248046875
[cube] updating squares['width']['aperture_713_1062'][3] = 3.6085143089294434
[cube] updating squares['centroid']['aperture_713_1062'][3] = -1.0772271156311035
[cube] updating squares['shift']['aperture_713_1062'][3] = -0.9269659519195557
[cube] updating squares['stretch']['aperture_713_1062'][3] = 0.0003290320164524019
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1004.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1004.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1004.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][3,:]
[cube] (raw_counts sum to 138250408.12939453 for ccd1004)
[cube] updating cubes['sky']['aperture_753_1062'][3,:]
[cube] updating cubes['centroid']['aperture_753_1062'][3,:]
[cube] updating cubes['width']['aperture_753_1062'][3,:]
[cube] updating cubes['peak']['aperture_753_1062'][3,:]
[cube] updating cubes['ok']['aperture_753_1062'][3,:]
[cube] updating squares['sky']['aperture_753_1062'][3] = 26692.80859375
[cube] updating squares['width']['aperture_753_1062'][3] = 3.6072824001312256
[cube] updating squares['centroid']['aperture_753_1062'][3] = -0.933194637298584
[cube] updating squares['shift']['aperture_753_1062'][3] = -1.8736000061035156
[cube] updating squares['stretch']['aperture_753_1062'][3] = 0.0004175880167167634
[cube] 3/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1005.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1005.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1005.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][4,:]
[cube] (raw_counts sum to 194873993.60009766 for ccd1005)
[cube] updating cubes['sky']['aperture_713_1062'][4,:]
[cube] updating cubes['centroid']['aperture_713_1062'][4,:]
[cube] updating cubes['width']['aperture_713_1062'][4,:]
[cube] updating cubes['peak']['aperture_713_1062'][4,:]
[cube] updating cubes['ok']['aperture_713_1062'][4,:]
[cube] updating squares['sky']['aperture_713_1062'][4] = 26498.119140625
[cube] updating squares['width']['aperture_713_1062'][4] = 3.208207845687866
[cube] updating squares['centroid']['aperture_713_1062'][4] = -1.1751211881637573
[cube] updating squares['shift']['aperture_713_1062'][4] = 1.6372275352478027
[cube] updating squares['stretch']['aperture_713_1062'][4] = 2.8418269721441902e-05
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1005.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1005.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1005.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][4,:]
[cube] (raw_counts sum to 138538504.07263184 for ccd1005)
[cube] updating cubes['sky']['aperture_753_1062'][4,:]
[cube] updating cubes['centroid']['aperture_753_1062'][4,:]
[cube] updating cubes['width']['aperture_753_1062'][4,:]
[cube] updating cubes['peak']['aperture_753_1062'][4,:]
[cube] updating cubes['ok']['aperture_753_1062'][4,:]
[cube] updating squares['sky']['aperture_753_1062'][4] = 26683.46875
[cube] updating squares['width']['aperture_753_1062'][4] = 3.205869436264038
[cube] updating squares['centroid']['aperture_753_1062'][4] = -1.0460866689682007
[cube] updating squares['shift']['aperture_753_1062'][4] = 0.8402474522590637
[cube] updating squares['stretch']['aperture_753_1062'][4] = -0.00015513367543462664
[cube] 4/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1006.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1006.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1006.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][5,:]
[cube] (raw_counts sum to 195408146.00756836 for ccd1006)
[cube] updating cubes['sky']['aperture_713_1062'][5,:]
[cube] updating cubes['centroid']['aperture_713_1062'][5,:]
[cube] updating cubes['width']['aperture_713_1062'][5,:]
[cube] updating cubes['peak']['aperture_713_1062'][5,:]
[cube] updating cubes['ok']['aperture_713_1062'][5,:]
[cube] updating squares['sky']['aperture_713_1062'][5] = 26560.259765625
[cube] updating squares['width']['aperture_713_1062'][5] = 3.4874513149261475
[cube] updating squares['centroid']['aperture_713_1062'][5] = -1.6658517122268677
[cube] updating squares['shift']['aperture_713_1062'][5] = 2.015096426010132
[cube] updating squares['stretch']['aperture_713_1062'][5] = -0.00012086868810001761
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1006.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1006.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1006.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][5,:]
[cube] (raw_counts sum to 139040637.17285156 for ccd1006)
[cube] updating cubes['sky']['aperture_753_1062'][5,:]
[cube] updating cubes['centroid']['aperture_753_1062'][5,:]
[cube] updating cubes['width']['aperture_753_1062'][5,:]
[cube] updating cubes['peak']['aperture_753_1062'][5,:]
[cube] updating cubes['ok']['aperture_753_1062'][5,:]
[cube] updating squares['sky']['aperture_753_1062'][5] = 26723.853515625
[cube] updating squares['width']['aperture_753_1062'][5] = 3.479156017303467
[cube] updating squares['centroid']['aperture_753_1062'][5] = -1.40537691116333
[cube] updating squares['shift']['aperture_753_1062'][5] = 1.1392669677734375
[cube] updating squares['stretch']['aperture_753_1062'][5] = -0.0001565017009852454
[cube] 5/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1007.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1007.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1007.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][6,:]
[cube] (raw_counts sum to 195060519.7352295 for ccd1007)
[cube] updating cubes['sky']['aperture_713_1062'][6,:]
[cube] updating cubes['centroid']['aperture_713_1062'][6,:]
[cube] updating cubes['width']['aperture_713_1062'][6,:]
[cube] updating cubes['peak']['aperture_713_1062'][6,:]
[cube] updating cubes['ok']['aperture_713_1062'][6,:]
[cube] updating squares['sky']['aperture_713_1062'][6] = 26248.2265625
[cube] updating squares['width']['aperture_713_1062'][6] = 3.4880619049072266
[cube] updating squares['centroid']['aperture_713_1062'][6] = -2.1098737716674805
[cube] updating squares['shift']['aperture_713_1062'][6] = 1.1687301397323608
[cube] updating squares['stretch']['aperture_713_1062'][6] = 0.00011907620501006022
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1007.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1007.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1007.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][6,:]
[cube] (raw_counts sum to 139208876.27075195 for ccd1007)
[cube] updating cubes['sky']['aperture_753_1062'][6,:]
[cube] updating cubes['centroid']['aperture_753_1062'][6,:]
[cube] updating cubes['width']['aperture_753_1062'][6,:]
[cube] updating cubes['peak']['aperture_753_1062'][6,:]
[cube] updating cubes['ok']['aperture_753_1062'][6,:]
[cube] updating squares['sky']['aperture_753_1062'][6] = 26473.90625
[cube] updating squares['width']['aperture_753_1062'][6] = 3.482602596282959
[cube] updating squares['centroid']['aperture_753_1062'][6] = -1.8909597396850586
[cube] updating squares['shift']['aperture_753_1062'][6] = 0.5555106997489929
[cube] updating squares['stretch']['aperture_753_1062'][6] = -0.0001653880754020065
[cube] 6/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1008.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1008.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1008.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][7,:]
[cube] (raw_counts sum to 194930242.01342773 for ccd1008)
[cube] updating cubes['sky']['aperture_713_1062'][7,:]
[cube] updating cubes['centroid']['aperture_713_1062'][7,:]
[cube] updating cubes['width']['aperture_713_1062'][7,:]
[cube] updating cubes['peak']['aperture_713_1062'][7,:]
[cube] updating cubes['ok']['aperture_713_1062'][7,:]
[cube] updating squares['sky']['aperture_713_1062'][7] = 26301.08984375
[cube] updating squares['width']['aperture_713_1062'][7] = 3.2716140747070312
[cube] updating squares['centroid']['aperture_713_1062'][7] = -0.6581718325614929
[cube] updating squares['shift']['aperture_713_1062'][7] = 0.24988017976284027
[cube] updating squares['stretch']['aperture_713_1062'][7] = 0.00014625157928094268
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1008.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1008.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1008.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][7,:]
[cube] (raw_counts sum to 138679167.9342041 for ccd1008)
[cube] updating cubes['sky']['aperture_753_1062'][7,:]
[cube] updating cubes['centroid']['aperture_753_1062'][7,:]
[cube] updating cubes['width']['aperture_753_1062'][7,:]
[cube] updating cubes['peak']['aperture_753_1062'][7,:]
[cube] updating cubes['ok']['aperture_753_1062'][7,:]
[cube] updating squares['sky']['aperture_753_1062'][7] = 26395.673828125
[cube] updating squares['width']['aperture_753_1062'][7] = 3.2618916034698486
[cube] updating squares['centroid']['aperture_753_1062'][7] = -0.579909086227417
[cube] updating squares['shift']['aperture_753_1062'][7] = -0.2770712971687317
[cube] updating squares['stretch']['aperture_753_1062'][7] = -5.382858216762543e-05
[cube] 7/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1009.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1009.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1009.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][8,:]
[cube] (raw_counts sum to 194408572.7434082 for ccd1009)
[cube] updating cubes['sky']['aperture_713_1062'][8,:]
[cube] updating cubes['centroid']['aperture_713_1062'][8,:]
[cube] updating cubes['width']['aperture_713_1062'][8,:]
[cube] updating cubes['peak']['aperture_713_1062'][8,:]
[cube] updating cubes['ok']['aperture_713_1062'][8,:]
[cube] updating squares['sky']['aperture_713_1062'][8] = 26207.37890625
[cube] updating squares['width']['aperture_713_1062'][8] = 3.4509949684143066
[cube] updating squares['centroid']['aperture_713_1062'][8] = -1.8556910753250122
[cube] updating squares['shift']['aperture_713_1062'][8] = 1.4175125360488892
[cube] updating squares['stretch']['aperture_713_1062'][8] = 3.247519634896889e-05
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1009.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1009.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1009.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][8,:]
[cube] (raw_counts sum to 138700007.52331543 for ccd1009)
[cube] updating cubes['sky']['aperture_753_1062'][8,:]
[cube] updating cubes['centroid']['aperture_753_1062'][8,:]
[cube] updating cubes['width']['aperture_753_1062'][8,:]
[cube] updating cubes['peak']['aperture_753_1062'][8,:]
[cube] updating cubes['ok']['aperture_753_1062'][8,:]
[cube] updating squares['sky']['aperture_753_1062'][8] = 26379.619140625
[cube] updating squares['width']['aperture_753_1062'][8] = 3.460927724838257
[cube] updating squares['centroid']['aperture_753_1062'][8] = -1.784852147102356
[cube] updating squares['shift']['aperture_753_1062'][8] = 0.5422664284706116
[cube] updating squares['stretch']['aperture_753_1062'][8] = 1.8357477529207245e-05
[cube] 8/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1010.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1010.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1010.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][9,:]
[cube] (raw_counts sum to 195576603.2734375 for ccd1010)
[cube] updating cubes['sky']['aperture_713_1062'][9,:]
[cube] updating cubes['centroid']['aperture_713_1062'][9,:]
[cube] updating cubes['width']['aperture_713_1062'][9,:]
[cube] updating cubes['peak']['aperture_713_1062'][9,:]
[cube] updating cubes['ok']['aperture_713_1062'][9,:]
[cube] updating squares['sky']['aperture_713_1062'][9] = 26066.810546875
[cube] updating squares['width']['aperture_713_1062'][9] = 3.373013496398926
[cube] updating squares['centroid']['aperture_713_1062'][9] = -1.4291497468948364
[cube] updating squares['shift']['aperture_713_1062'][9] = 1.5012049674987793
[cube] updating squares['stretch']['aperture_713_1062'][9] = -4.8726560635259375e-05
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1010.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1010.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1010.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][9,:]
[cube] (raw_counts sum to 139268901.4802246 for ccd1010)
[cube] updating cubes['sky']['aperture_753_1062'][9,:]
[cube] updating cubes['centroid']['aperture_753_1062'][9,:]
[cube] updating cubes['width']['aperture_753_1062'][9,:]
[cube] updating cubes['peak']['aperture_753_1062'][9,:]
[cube] updating cubes['ok']['aperture_753_1062'][9,:]
[cube] updating squares['sky']['aperture_753_1062'][9] = 26292.1015625
[cube] updating squares['width']['aperture_753_1062'][9] = 3.366770029067993
[cube] updating squares['centroid']['aperture_753_1062'][9] = -1.2439466714859009
[cube] updating squares['shift']['aperture_753_1062'][9] = 0.6212433576583862
[cube] updating squares['stretch']['aperture_753_1062'][9] = -3.17366466333624e-05
[cube] 9/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1011.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1011.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1011.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][10,:]
[cube] (raw_counts sum to 195522436.88464355 for ccd1011)
[cube] updating cubes['sky']['aperture_713_1062'][10,:]
[cube] updating cubes['centroid']['aperture_713_1062'][10,:]
[cube] updating cubes['width']['aperture_713_1062'][10,:]
[cube] updating cubes['peak']['aperture_713_1062'][10,:]
[cube] updating cubes['ok']['aperture_713_1062'][10,:]
[cube] updating squares['sky']['aperture_713_1062'][10] = 26082.83203125
[cube] updating squares['width']['aperture_713_1062'][10] = 3.76403546333313
[cube] updating squares['centroid']['aperture_713_1062'][10] = -1.6060465574264526
[cube] updating squares['shift']['aperture_713_1062'][10] = -0.6113647222518921
[cube] updating squares['stretch']['aperture_713_1062'][10] = 0.00027127808425575495
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1011.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1011.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1011.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][10,:]
[cube] (raw_counts sum to 139283181.6369629 for ccd1011)
[cube] updating cubes['sky']['aperture_753_1062'][10,:]
[cube] updating cubes['centroid']['aperture_753_1062'][10,:]
[cube] updating cubes['width']['aperture_753_1062'][10,:]
[cube] updating cubes['peak']['aperture_753_1062'][10,:]
[cube] updating cubes['ok']['aperture_753_1062'][10,:]
[cube] updating squares['sky']['aperture_753_1062'][10] = 26318.19921875
[cube] updating squares['width']['aperture_753_1062'][10] = 3.746506452560425
[cube] updating squares['centroid']['aperture_753_1062'][10] = -1.344510793685913
[cube] updating squares['shift']['aperture_753_1062'][10] = -1.2796498537063599
[cube] updating squares['stretch']['aperture_753_1062'][10] = 0.00033280387287959456
[cube] 10/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1012.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1012.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1012.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][11,:]
[cube] (raw_counts sum to 195449491.4963379 for ccd1012)
[cube] updating cubes['sky']['aperture_713_1062'][11,:]
[cube] updating cubes['centroid']['aperture_713_1062'][11,:]
[cube] updating cubes['width']['aperture_713_1062'][11,:]
[cube] updating cubes['peak']['aperture_713_1062'][11,:]
[cube] updating cubes['ok']['aperture_713_1062'][11,:]
[cube] updating squares['sky']['aperture_713_1062'][11] = 26273.724609375
[cube] updating squares['width']['aperture_713_1062'][11] = 3.519380807876587
[cube] updating squares['centroid']['aperture_713_1062'][11] = -1.629784345626831
[cube] updating squares['shift']['aperture_713_1062'][11] = 0.14635923504829407
[cube] updating squares['stretch']['aperture_713_1062'][11] = 0.00018418452236801386
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1012.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1012.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1012.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][11,:]
[cube] (raw_counts sum to 139199616.29089355 for ccd1012)
[cube] updating cubes['sky']['aperture_753_1062'][11,:]
[cube] updating cubes['centroid']['aperture_753_1062'][11,:]
[cube] updating cubes['width']['aperture_753_1062'][11,:]
[cube] updating cubes['peak']['aperture_753_1062'][11,:]
[cube] updating cubes['ok']['aperture_753_1062'][11,:]
[cube] updating squares['sky']['aperture_753_1062'][11] = 26456.091796875
[cube] updating squares['width']['aperture_753_1062'][11] = 3.481020450592041
[cube] updating squares['centroid']['aperture_753_1062'][11] = -1.4766392707824707
[cube] updating squares['shift']['aperture_753_1062'][11] = -0.8152304887771606
[cube] updating squares['stretch']['aperture_753_1062'][11] = 0.0002366480912314728
[cube] 11/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1013.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1013.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1013.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][12,:]
[cube] (raw_counts sum to 195231896.44396973 for ccd1013)
[cube] updating cubes['sky']['aperture_713_1062'][12,:]
[cube] updating cubes['centroid']['aperture_713_1062'][12,:]
[cube] updating cubes['width']['aperture_713_1062'][12,:]
[cube] updating cubes['peak']['aperture_713_1062'][12,:]
[cube] updating cubes['ok']['aperture_713_1062'][12,:]
[cube] updating squares['sky']['aperture_713_1062'][12] = 26147.626953125
[cube] updating squares['width']['aperture_713_1062'][12] = 3.614607810974121
[cube] updating squares['centroid']['aperture_713_1062'][12] = -2.7904248237609863
[cube] updating squares['shift']['aperture_713_1062'][12] = 2.551649332046509
[cube] updating squares['stretch']['aperture_713_1062'][12] = -0.00013944022066425532
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1013.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1013.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1013.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][12,:]
[cube] (raw_counts sum to 139315109.1878662 for ccd1013)
[cube] updating cubes['sky']['aperture_753_1062'][12,:]
[cube] updating cubes['centroid']['aperture_753_1062'][12,:]
[cube] updating cubes['width']['aperture_753_1062'][12,:]
[cube] updating cubes['peak']['aperture_753_1062'][12,:]
[cube] updating cubes['ok']['aperture_753_1062'][12,:]
[cube] updating squares['sky']['aperture_753_1062'][12] = 26319.236328125
[cube] updating squares['width']['aperture_753_1062'][12] = 3.604405641555786
[cube] updating squares['centroid']['aperture_753_1062'][12] = -2.594517469406128
[cube] updating squares['shift']['aperture_753_1062'][12] = 1.65903902053833
[cube] updating squares['stretch']['aperture_753_1062'][12] = -0.00022058475587982684
[cube] 12/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1014.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1014.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1014.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][13,:]
[cube] (raw_counts sum to 195194357.59521484 for ccd1014)
[cube] updating cubes['sky']['aperture_713_1062'][13,:]
[cube] updating cubes['centroid']['aperture_713_1062'][13,:]
[cube] updating cubes['width']['aperture_713_1062'][13,:]
[cube] updating cubes['peak']['aperture_713_1062'][13,:]
[cube] updating cubes['ok']['aperture_713_1062'][13,:]
[cube] updating squares['sky']['aperture_713_1062'][13] = 25914.359375
[cube] updating squares['width']['aperture_713_1062'][13] = 3.6287503242492676
[cube] updating squares['centroid']['aperture_713_1062'][13] = -1.2797107696533203
[cube] updating squares['shift']['aperture_713_1062'][13] = 1.7008371353149414
[cube] updating squares['stretch']['aperture_713_1062'][13] = 5.0859995099017397e-05
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1014.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1014.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1014.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][13,:]
[cube] (raw_counts sum to 139216495.04748535 for ccd1014)
[cube] updating cubes['sky']['aperture_753_1062'][13,:]
[cube] updating cubes['centroid']['aperture_753_1062'][13,:]
[cube] updating cubes['width']['aperture_753_1062'][13,:]
[cube] updating cubes['peak']['aperture_753_1062'][13,:]
[cube] updating cubes['ok']['aperture_753_1062'][13,:]
[cube] updating squares['sky']['aperture_753_1062'][13] = 26033.015625
[cube] updating squares['width']['aperture_753_1062'][13] = 3.6136281490325928
[cube] updating squares['centroid']['aperture_753_1062'][13] = -1.1223483085632324
[cube] updating squares['shift']['aperture_753_1062'][13] = 0.9356027841567993
[cube] updating squares['stretch']['aperture_753_1062'][13] = -0.0001765591005096212
[cube] 13/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1015.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1015.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1015.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][14,:]
[cube] (raw_counts sum to 195413636.63049316 for ccd1015)
[cube] updating cubes['sky']['aperture_713_1062'][14,:]
[cube] updating cubes['centroid']['aperture_713_1062'][14,:]
[cube] updating cubes['width']['aperture_713_1062'][14,:]
[cube] updating cubes['peak']['aperture_713_1062'][14,:]
[cube] updating cubes['ok']['aperture_713_1062'][14,:]
[cube] updating squares['sky']['aperture_713_1062'][14] = 25780.640625
[cube] updating squares['width']['aperture_713_1062'][14] = 3.3250210285186768
[cube] updating squares['centroid']['aperture_713_1062'][14] = -1.6815423965454102
[cube] updating squares['shift']['aperture_713_1062'][14] = 0.5461016297340393
[cube] updating squares['stretch']['aperture_713_1062'][14] = 0.00011571174400160089
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1015.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1015.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1015.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][14,:]
[cube] (raw_counts sum to 139343258.0279541 for ccd1015)
[cube] updating cubes['sky']['aperture_753_1062'][14,:]
[cube] updating cubes['centroid']['aperture_753_1062'][14,:]
[cube] updating cubes['width']['aperture_753_1062'][14,:]
[cube] updating cubes['peak']['aperture_753_1062'][14,:]
[cube] updating cubes['ok']['aperture_753_1062'][14,:]
[cube] updating squares['sky']['aperture_753_1062'][14] = 25973.103515625
[cube] updating squares['width']['aperture_753_1062'][14] = 3.328125476837158
[cube] updating squares['centroid']['aperture_753_1062'][14] = -1.540851354598999
[cube] updating squares['shift']['aperture_753_1062'][14] = -0.1281542181968689
[cube] updating squares['stretch']['aperture_753_1062'][14] = 7.12167311576195e-05
[cube] 14/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1016.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1016.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1016.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][15,:]
[cube] (raw_counts sum to 195887975.37329102 for ccd1016)
[cube] updating cubes['sky']['aperture_713_1062'][15,:]
[cube] updating cubes['centroid']['aperture_713_1062'][15,:]
[cube] updating cubes['width']['aperture_713_1062'][15,:]
[cube] updating cubes['peak']['aperture_713_1062'][15,:]
[cube] updating cubes['ok']['aperture_713_1062'][15,:]
[cube] updating squares['sky']['aperture_713_1062'][15] = 25782.568359375
[cube] updating squares['width']['aperture_713_1062'][15] = 3.6847987174987793
[cube] updating squares['centroid']['aperture_713_1062'][15] = -1.405511498451233
[cube] updating squares['shift']['aperture_713_1062'][15] = -0.7384307384490967
[cube] updating squares['stretch']['aperture_713_1062'][15] = 0.00030625949148088694
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1016.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1016.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1016.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][15,:]
[cube] (raw_counts sum to 139813966.55786133 for ccd1016)
[cube] updating cubes['sky']['aperture_753_1062'][15,:]
[cube] updating cubes['centroid']['aperture_753_1062'][15,:]
[cube] updating cubes['width']['aperture_753_1062'][15,:]
[cube] updating cubes['peak']['aperture_753_1062'][15,:]
[cube] updating cubes['ok']['aperture_753_1062'][15,:]
[cube] updating squares['sky']['aperture_753_1062'][15] = 25914.72265625
[cube] updating squares['width']['aperture_753_1062'][15] = 3.6690738201141357
[cube] updating squares['centroid']['aperture_753_1062'][15] = -1.2302335500717163
[cube] updating squares['shift']['aperture_753_1062'][15] = -1.6409581899642944
[cube] updating squares['stretch']['aperture_753_1062'][15] = 0.00037461810279637575
[cube] 15/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1017.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1017.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1017.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][16,:]
[cube] (raw_counts sum to 194641551.428833 for ccd1017)
[cube] updating cubes['sky']['aperture_713_1062'][16,:]
[cube] updating cubes['centroid']['aperture_713_1062'][16,:]
[cube] updating cubes['width']['aperture_713_1062'][16,:]
[cube] updating cubes['peak']['aperture_713_1062'][16,:]
[cube] updating cubes['ok']['aperture_713_1062'][16,:]
[cube] updating squares['sky']['aperture_713_1062'][16] = 25605.501953125
[cube] updating squares['width']['aperture_713_1062'][16] = 4.188508987426758
[cube] updating squares['centroid']['aperture_713_1062'][16] = -1.2880187034606934
[cube] updating squares['shift']['aperture_713_1062'][16] = 0.20955999195575714
[cube] updating squares['stretch']['aperture_713_1062'][16] = 0.00014238002768252045
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1017.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1017.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1017.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][16,:]
[cube] (raw_counts sum to 138634294.5098877 for ccd1017)
[cube] updating cubes['sky']['aperture_753_1062'][16,:]
[cube] updating cubes['centroid']['aperture_753_1062'][16,:]
[cube] updating cubes['width']['aperture_753_1062'][16,:]
[cube] updating cubes['peak']['aperture_753_1062'][16,:]
[cube] updating cubes['ok']['aperture_753_1062'][16,:]
[cube] updating squares['sky']['aperture_753_1062'][16] = 25820.435546875
[cube] updating squares['width']['aperture_753_1062'][16] = 4.205639839172363
[cube] updating squares['centroid']['aperture_753_1062'][16] = -1.1904557943344116
[cube] updating squares['shift']['aperture_753_1062'][16] = -0.5164452791213989
[cube] updating squares['stretch']['aperture_753_1062'][16] = 8.30299686640501e-05
[cube] 16/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1018.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1018.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1018.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][17,:]
[cube] (raw_counts sum to 195733443.93579102 for ccd1018)
[cube] updating cubes['sky']['aperture_713_1062'][17,:]
[cube] updating cubes['centroid']['aperture_713_1062'][17,:]
[cube] updating cubes['width']['aperture_713_1062'][17,:]
[cube] updating cubes['peak']['aperture_713_1062'][17,:]
[cube] updating cubes['ok']['aperture_713_1062'][17,:]
[cube] updating squares['sky']['aperture_713_1062'][17] = 25640.09765625
[cube] updating squares['width']['aperture_713_1062'][17] = 3.818878412246704
[cube] updating squares['centroid']['aperture_713_1062'][17] = -0.906408965587616
[cube] updating squares['shift']['aperture_713_1062'][17] = 2.272455930709839
[cube] updating squares['stretch']['aperture_713_1062'][17] = -0.00017724557255860418
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1018.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1018.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1018.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][17,:]
[cube] (raw_counts sum to 139621460.1427002 for ccd1018)
[cube] updating cubes['sky']['aperture_753_1062'][17,:]
[cube] updating cubes['centroid']['aperture_753_1062'][17,:]
[cube] updating cubes['width']['aperture_753_1062'][17,:]
[cube] updating cubes['peak']['aperture_753_1062'][17,:]
[cube] updating cubes['ok']['aperture_753_1062'][17,:]
[cube] updating squares['sky']['aperture_753_1062'][17] = 25869.861328125
[cube] updating squares['width']['aperture_753_1062'][17] = 3.817016124725342
[cube] updating squares['centroid']['aperture_753_1062'][17] = -0.7573429346084595
[cube] updating squares['shift']['aperture_753_1062'][17] = 1.408476710319519
[cube] updating squares['stretch']['aperture_753_1062'][17] = -0.00020803327788598835
[cube] 17/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1019.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1019.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1019.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][18,:]
[cube] (raw_counts sum to 194722911.82226562 for ccd1019)
[cube] updating cubes['sky']['aperture_713_1062'][18,:]
[cube] updating cubes['centroid']['aperture_713_1062'][18,:]
[cube] updating cubes['width']['aperture_713_1062'][18,:]
[cube] updating cubes['peak']['aperture_713_1062'][18,:]
[cube] updating cubes['ok']['aperture_713_1062'][18,:]
[cube] updating squares['sky']['aperture_713_1062'][18] = 25550.11328125
[cube] updating squares['width']['aperture_713_1062'][18] = 4.1152801513671875
[cube] updating squares['centroid']['aperture_713_1062'][18] = -1.076622724533081
[cube] updating squares['shift']['aperture_713_1062'][18] = 0.1657625287771225
[cube] updating squares['stretch']['aperture_713_1062'][18] = 0.0002226413635071367
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1019.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1019.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1019.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][18,:]
[cube] (raw_counts sum to 138923773.09692383 for ccd1019)
[cube] updating cubes['sky']['aperture_753_1062'][18,:]
[cube] updating cubes['centroid']['aperture_753_1062'][18,:]
[cube] updating cubes['width']['aperture_753_1062'][18,:]
[cube] updating cubes['peak']['aperture_753_1062'][18,:]
[cube] updating cubes['ok']['aperture_753_1062'][18,:]
[cube] updating squares['sky']['aperture_753_1062'][18] = 25749.1171875
[cube] updating squares['width']['aperture_753_1062'][18] = 4.13894510269165
[cube] updating squares['centroid']['aperture_753_1062'][18] = -1.1180660724639893
[cube] updating squares['shift']['aperture_753_1062'][18] = -0.5934742093086243
[cube] updating squares['stretch']['aperture_753_1062'][18] = 0.0002629152440931648
[cube] 18/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1020.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1020.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1020.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][19,:]
[cube] (raw_counts sum to 196081447.68115234 for ccd1020)
[cube] updating cubes['sky']['aperture_713_1062'][19,:]
[cube] updating cubes['centroid']['aperture_713_1062'][19,:]
[cube] updating cubes['width']['aperture_713_1062'][19,:]
[cube] updating cubes['peak']['aperture_713_1062'][19,:]
[cube] updating cubes['ok']['aperture_713_1062'][19,:]
[cube] updating squares['sky']['aperture_713_1062'][19] = 25693.2578125
[cube] updating squares['width']['aperture_713_1062'][19] = 2.92012095451355
[cube] updating squares['centroid']['aperture_713_1062'][19] = -0.8899028301239014
[cube] updating squares['shift']['aperture_713_1062'][19] = -0.5663332939147949
[cube] updating squares['stretch']['aperture_713_1062'][19] = 0.00029832913423888385
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1020.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1020.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1020.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][19,:]
[cube] (raw_counts sum to 140173776.3557129 for ccd1020)
[cube] updating cubes['sky']['aperture_753_1062'][19,:]
[cube] updating cubes['centroid']['aperture_753_1062'][19,:]
[cube] updating cubes['width']['aperture_753_1062'][19,:]
[cube] updating cubes['peak']['aperture_753_1062'][19,:]
[cube] updating cubes['ok']['aperture_753_1062'][19,:]
[cube] updating squares['sky']['aperture_753_1062'][19] = 25901.357421875
[cube] updating squares['width']['aperture_753_1062'][19] = 2.926478385925293
[cube] updating squares['centroid']['aperture_753_1062'][19] = -0.7477177977561951
[cube] updating squares['shift']['aperture_753_1062'][19] = -1.3325729370117188
[cube] updating squares['stretch']['aperture_753_1062'][19] = 0.00021816420485265553
[cube] 19/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1021.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1021.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1021.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][20,:]
[cube] (raw_counts sum to 196073984.16540527 for ccd1021)
[cube] updating cubes['sky']['aperture_713_1062'][20,:]
[cube] updating cubes['centroid']['aperture_713_1062'][20,:]
[cube] updating cubes['width']['aperture_713_1062'][20,:]
[cube] updating cubes['peak']['aperture_713_1062'][20,:]
[cube] updating cubes['ok']['aperture_713_1062'][20,:]
[cube] updating squares['sky']['aperture_713_1062'][20] = 25809.18359375
[cube] updating squares['width']['aperture_713_1062'][20] = 3.050464630126953
[cube] updating squares['centroid']['aperture_713_1062'][20] = -1.5695337057113647
[cube] updating squares['shift']['aperture_713_1062'][20] = 0.6667041778564453
[cube] updating squares['stretch']['aperture_713_1062'][20] = 0.00016691671044100076
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1021.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1021.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1021.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][20,:]
[cube] (raw_counts sum to 140417564.33874512 for ccd1021)
[cube] updating cubes['sky']['aperture_753_1062'][20,:]
[cube] updating cubes['centroid']['aperture_753_1062'][20,:]
[cube] updating cubes['width']['aperture_753_1062'][20,:]
[cube] updating cubes['peak']['aperture_753_1062'][20,:]
[cube] updating cubes['ok']['aperture_753_1062'][20,:]
[cube] updating squares['sky']['aperture_753_1062'][20] = 25973.353515625
[cube] updating squares['width']['aperture_753_1062'][20] = 3.014249324798584
[cube] updating squares['centroid']['aperture_753_1062'][20] = -1.4189156293869019
[cube] updating squares['shift']['aperture_753_1062'][20] = -0.20592479407787323
[cube] updating squares['stretch']['aperture_753_1062'][20] = 7.673180516576394e-05
[cube] 20/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1022.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1022.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1022.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][21,:]
[cube] (raw_counts sum to 196325868.7548828 for ccd1022)
[cube] updating cubes['sky']['aperture_713_1062'][21,:]
[cube] updating cubes['centroid']['aperture_713_1062'][21,:]
[cube] updating cubes['width']['aperture_713_1062'][21,:]
[cube] updating cubes['peak']['aperture_713_1062'][21,:]
[cube] updating cubes['ok']['aperture_713_1062'][21,:]
[cube] updating squares['sky']['aperture_713_1062'][21] = 25966.537109375
[cube] updating squares['width']['aperture_713_1062'][21] = 2.8215861320495605
[cube] updating squares['centroid']['aperture_713_1062'][21] = -1.608486533164978
[cube] updating squares['shift']['aperture_713_1062'][21] = 3.7886853218078613
[cube] updating squares['stretch']['aperture_713_1062'][21] = -8.29315758892335e-05
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1022.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1022.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1022.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][21,:]
[cube] (raw_counts sum to 139922664.97753906 for ccd1022)
[cube] updating cubes['sky']['aperture_753_1062'][21,:]
[cube] updating cubes['centroid']['aperture_753_1062'][21,:]
[cube] updating cubes['width']['aperture_753_1062'][21,:]
[cube] updating cubes['peak']['aperture_753_1062'][21,:]
[cube] updating cubes['ok']['aperture_753_1062'][21,:]
[cube] updating squares['sky']['aperture_753_1062'][21] = 26150.37890625
[cube] updating squares['width']['aperture_753_1062'][21] = 2.821009874343872
[cube] updating squares['centroid']['aperture_753_1062'][21] = -1.521431803703308
[cube] updating squares['shift']['aperture_753_1062'][21] = 2.9735183715820312
[cube] updating squares['stretch']['aperture_753_1062'][21] = -0.00015641062054783106
[cube] 21/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1023.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1023.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1023.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][22,:]
[cube] (raw_counts sum to 196301006.8092041 for ccd1023)
[cube] updating cubes['sky']['aperture_713_1062'][22,:]
[cube] updating cubes['centroid']['aperture_713_1062'][22,:]
[cube] updating cubes['width']['aperture_713_1062'][22,:]
[cube] updating cubes['peak']['aperture_713_1062'][22,:]
[cube] updating cubes['ok']['aperture_713_1062'][22,:]
[cube] updating squares['sky']['aperture_713_1062'][22] = 25916.7265625
[cube] updating squares['width']['aperture_713_1062'][22] = 2.950031042098999
[cube] updating squares['centroid']['aperture_713_1062'][22] = -2.0167770385742188
[cube] updating squares['shift']['aperture_713_1062'][22] = 0.8154138326644897
[cube] updating squares['stretch']['aperture_713_1062'][22] = 0.00010967064736178145
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1023.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1023.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1023.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][22,:]
[cube] (raw_counts sum to 139805267.33691406 for ccd1023)
[cube] updating cubes['sky']['aperture_753_1062'][22,:]
[cube] updating cubes['centroid']['aperture_753_1062'][22,:]
[cube] updating cubes['width']['aperture_753_1062'][22,:]
[cube] updating cubes['peak']['aperture_753_1062'][22,:]
[cube] updating cubes['ok']['aperture_753_1062'][22,:]
[cube] updating squares['sky']['aperture_753_1062'][22] = 26125.8046875
[cube] updating squares['width']['aperture_753_1062'][22] = 2.9268298149108887
[cube] updating squares['centroid']['aperture_753_1062'][22] = -1.9031965732574463
[cube] updating squares['shift']['aperture_753_1062'][22] = 0.04198082536458969
[cube] updating squares['stretch']['aperture_753_1062'][22] = 4.958686258760281e-05
[cube] 22/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1024.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1024.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1024.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][23,:]
[cube] (raw_counts sum to 196915231.48425293 for ccd1024)
[cube] updating cubes['sky']['aperture_713_1062'][23,:]
[cube] updating cubes['centroid']['aperture_713_1062'][23,:]
[cube] updating cubes['width']['aperture_713_1062'][23,:]
[cube] updating cubes['peak']['aperture_713_1062'][23,:]
[cube] updating cubes['ok']['aperture_713_1062'][23,:]
[cube] updating squares['sky']['aperture_713_1062'][23] = 25675.263671875
[cube] updating squares['width']['aperture_713_1062'][23] = 2.8475122451782227
[cube] updating squares['centroid']['aperture_713_1062'][23] = -1.2190840244293213
[cube] updating squares['shift']['aperture_713_1062'][23] = 0.17792433500289917
[cube] updating squares['stretch']['aperture_713_1062'][23] = 0.00022637585061602294
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1024.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1024.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1024.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][23,:]
[cube] (raw_counts sum to 140565293.06713867 for ccd1024)
[cube] updating cubes['sky']['aperture_753_1062'][23,:]
[cube] updating cubes['centroid']['aperture_753_1062'][23,:]
[cube] updating cubes['width']['aperture_753_1062'][23,:]
[cube] updating cubes['peak']['aperture_753_1062'][23,:]
[cube] updating cubes['ok']['aperture_753_1062'][23,:]
[cube] updating squares['sky']['aperture_753_1062'][23] = 25878.841796875
[cube] updating squares['width']['aperture_753_1062'][23] = 2.8268449306488037
[cube] updating squares['centroid']['aperture_753_1062'][23] = -1.0671920776367188
[cube] updating squares['shift']['aperture_753_1062'][23] = -0.5662877559661865
[cube] updating squares['stretch']['aperture_753_1062'][23] = 0.00012610516569111496
[cube] 23/25 spectra loaded into cube
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1025.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/stretchedsupersampled/stretchedsupersampled_ccd1025.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_713_1062/extracted_ccd1025.npy
[cube] updating cubes['raw_counts']['aperture_713_1062'][24,:]
[cube] (raw_counts sum to 197142546.52392578 for ccd1025)
[cube] updating cubes['sky']['aperture_713_1062'][24,:]
[cube] updating cubes['centroid']['aperture_713_1062'][24,:]
[cube] updating cubes['width']['aperture_713_1062'][24,:]
[cube] updating cubes['peak']['aperture_713_1062'][24,:]
[cube] updating cubes['ok']['aperture_713_1062'][24,:]
[cube] updating squares['sky']['aperture_713_1062'][24] = 25449.703125
[cube] updating squares['width']['aperture_713_1062'][24] = 2.7983579635620117
[cube] updating squares['centroid']['aperture_713_1062'][24] = -1.5765215158462524
[cube] updating squares['shift']['aperture_713_1062'][24] = 0.9135115742683411
[cube] updating squares['stretch']['aperture_713_1062'][24] = 0.00016374832193832844
[cube] trying to load /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1025.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/stretchedsupersampled/stretchedsupersampled_ccd1025.npy
[cube] loaded /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/aperture_753_1062/extracted_ccd1025.npy
[cube] updating cubes['raw_counts']['aperture_753_1062'][24,:]
[cube] (raw_counts sum to 140488177.79541016 for ccd1025)
[cube] updating cubes['sky']['aperture_753_1062'][24,:]
[cube] updating cubes['centroid']['aperture_753_1062'][24,:]
[cube] updating cubes['width']['aperture_753_1062'][24,:]
[cube] updating cubes['peak']['aperture_753_1062'][24,:]
[cube] updating cubes['ok']['aperture_753_1062'][24,:]
[cube] updating squares['sky']['aperture_753_1062'][24] = 25579.56640625
[cube] updating squares['width']['aperture_753_1062'][24] = 2.782870292663574
[cube] updating squares['centroid']['aperture_753_1062'][24] = -1.390044093132019
[cube] updating squares['shift']['aperture_753_1062'][24] = 0.12250898033380508
[cube] updating squares['stretch']['aperture_753_1062'][24] = 4.842571070184931e-05
[cube] 24/25 spectra loaded into cube
[cube] Done loading spectral cube.
[cube] attempting to save the cube of loaded, shifted, compiled spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/spectralCube_WASP-94Ab_ut140809_2stars_25spectra_16px_shifted.npy
[cube] including [cubes] in the saved cube structure
[cube] including [squares] in the saved cube structure
[cube] including [temporal] in the saved cube structure
[cube] including [spectral] in the saved cube structure
[cube] including [stellar] in the saved cube structure
[cube] including [target] in the saved cube structure
[cube] including [comparisons] in the saved cube structure
[cube] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/imagedcubes/basic+shifted+raw_counts+aperture_713_1062.pdf already exists
[cube] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/imagedcubes/wavelength+shifted+raw_counts+aperture_713_1062.pdf already exists
[cube] /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/imagedcubes/comparison+shifted+raw_counts+aperture_713_1062.pdf already exists
[cube] attempting to save the cube of loaded, shifted, compiled spectra to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/spectralCube_WASP-94Ab_ut140809_2stars_25spectra_16px_shifted.npy
[cube] including [cubes] in the saved cube structure
[cube] including [squares] in the saved cube structure
[cube] including [temporal] in the saved cube structure
[cube] including [spectral] in the saved cube structure
[cube] including [stellar] in the saved cube structure
[cube] including [target] in the saved cube structure
[cube] including [comparisons] in the saved cube structure
[1788.8613 758.58594 740.3203 460.4375 431.3086 493.44922
181.41602 234.2793 140.56836 0. 16.021484 206.91406
80.81641 -152.45117 -286.16992 -284.2422 -461.3086 -426.7129
-516.69727 -373.55273 -257.62695 -100.27344 -150.08398 -391.54688
-617.1074 ]
[1662.4355 699.75586 558.6738 400.70703 391.3672 431.75195
181.80469 103.572266 87.51758 0. 26.097656 163.99023
27.134766 -259.08594 -318.99805 -377.3789 -471.66602 -422.24023
-542.9844 -390.74414 -318.74805 -141.72266 -166.29688 -413.25977
-712.53516 ]
[-0.5875089 -0.1536417 0.00794435 0.15751934 -0.24278712 0.03645635
0.03706694 -0.1793809 0. -0.07798147 0.3130405 0.06838584
0.16361284 0.17775536 -0.12597394 0.23380375 0.737514 0.36788344
0.6642852 -0.530874 -0.40053034 -0.62940884 -0.5009639 -0.6034827
-0.652637 ]
[-6.0007191e-01 -1.6135645e-01 3.2210350e-04 1.4635468e-01
-2.5505829e-01 1.8228292e-02 2.1674871e-02 -1.9903612e-01
0.0000000e+00 -9.4157696e-02 2.8557873e-01 2.0092726e-02
1.4347792e-01 1.5270042e-01 -1.3280225e-01 2.0814610e-01
7.4471211e-01 3.5608840e-01 6.7801738e-01 -5.3444934e-01
-4.4667840e-01 -6.3991785e-01 -5.3409791e-01 -6.3408279e-01
-6.7805743e-01]
[ 0.38207483 -0.21089673 -0.37201118 0.4923066 0.39441252 -0.09631801
-0.54034007 0.9113619 -0.28615737 0.14038396 -0.03651285 -0.06025064
-1.2208911 0.28982294 -0.11200869 0.1640222 0.281515 0.66312474
0.49291098 0.6796309 0. -0.03895283 -0.44724333 0.35044968
-0.00698781]
[ 0.368953 -0.26607943 -0.3927194 0.41131616 0.29842412 -0.06086612
-0.54644895 0.7646017 -0.44034135 0.10056412 0. -0.13212848
-1.2500067 0.22216249 -0.19634056 0.11427724 0.154055 0.58716786
0.22644472 0.596793 -0.07440484 -0.17692101 -0.5586858 0.27731872
-0.0455333 ]
[ 0.16648263 -0.42996925 1.1493098 -1.7423798 0.8218137 1.1996826
0.3533163 -0.56553364 0.6020987 0.68579113 -1.4267786 -0.6690546
1.7362355 0.8854233 -0.2693122 -1.5538446 -0.60585386 1.4570421
-0.6496513 -1.3817471 -0.14870965 2.9732714 0. -0.6374895
0.09809774]
[ 0. -0.31911734 0.9713484 -1.8628505 0.850997 1.1500164
0.5662602 -0.2663218 0.55301595 0.6319929 -1.2689004 -0.80448097
1.6697885 0.9463523 -0.11740471 -1.6302087 -0.50569576 1.4192262
-0.5827247 -1.3218235 -0.19517529 2.984268 0.05273033 -0.55553824
0.13325848]
[-1.2464594e-04 -1.1179123e-05 -2.3876279e-04 2.1332028e-04
-8.7293476e-05 -2.3658044e-04 3.3644610e-06 3.0539835e-05
-8.3236548e-05 -1.6443830e-04 1.5556635e-04 6.8472778e-05
-2.5515197e-04 -6.4851745e-05 0.0000000e+00 1.9054775e-04
2.6668284e-05 -2.9295732e-04 1.0692962e-04 1.8261740e-04
5.1204966e-05 -1.9864332e-04 -6.0410966e-06 1.1066411e-04
4.8036578e-05]
[-1.0869361e-04 -5.5405271e-05 -2.4580694e-04 3.9923054e-04
-1.7349115e-04 -1.7485917e-04 -1.8374555e-04 -7.2186056e-05
0.0000000e+00 -5.0094124e-05 3.1444640e-04 2.1829062e-04
-2.3894223e-04 -1.9491657e-04 5.2859254e-05 3.5626063e-04
6.4672495e-05 -2.2639075e-04 2.4455777e-04 1.9980673e-04
5.8374328e-05 -1.7476809e-04 3.1229385e-05 1.0774769e-04
3.0068233e-05]
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[cube] saved movie to /Users/zkbt/Cosmos/Data/mosaurusexample/working/ut140809_WASP-94Ab/extraction_default/shifted_cube_2stars_25spectra_1stride.mp4
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Content source: zkbt/mosasaurus
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