In [2]:
import xarray as xr
import numpy as np
import pandas as pd
%matplotlib inline
from matplotlib import pyplot as plt
from dask.diagnostics import ProgressBar
import seaborn as sns
from matplotlib.colors import LogNorm
In [3]:
# resampling frequency in number of days
freq=2
In [3]:
#ds_daily = xr.open_mfdataset('./data_globcolour/665648402.data/chl1/L3m_200204*_*AVW*_CHL1_DAY_00.nc')
ds_daily = xr.open_mfdataset('./data_globcolour/665648402.data/chl1/chl1_GSM_not_used/L3m_2017*__665648402_4_GSM-MODVIR_CHL1_DAY_00.nc', concat_dim=np.arange(192))
In [5]:
ds_daily.CHL1_mean.plot()
ds_daily.close()
In [6]:
# experiment: add time to the dataset and merge them
# step1: add time
# step2: merge
ds_daily1 = xr.open_mfdataset('./data_globcolour/665648402.data/chl1/chl1_AVW/L3m_20091129__665648402_4_AVW-MERMODSWF_CHL1_DAY_00.nc')
ds_daily2 = xr.open_mfdataset('./data_globcolour/665648402.data/chl1/chl1_AVW/L3m_20170711__665648402_4_AVW-MODVIR_CHL1_DAY_00.nc')
In [7]:
ds_daily1.CHL1_mean.plot()
Out[7]:
<matplotlib.collections.QuadMesh at 0x119443fd0>
In [8]:
ds_daily1.keys
Out[8]:
<bound method Mapping.keys of <xarray.Dataset>
Dimensions: (lat: 553, lon: 721)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 ...
Data variables:
CHL1_mean (lat, lon) float64 nan nan nan nan nan nan nan nan nan nan ...
CHL1_flags (lat, lon) float64 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 ...
CHL1_error (lat, lon) float64 nan nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MERIS/MODIS/SeaWiFS p...
product_name: L3m_20091129__665648402_4_AVW-MERMODSWF_CHL1_...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: CHL1
parameter: Chlorophyll concentration
parameter_algo_list: OC4Me,,
publication: O'Reilly, J.E., and 24 Coauthors, 2000: SeaWi...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MER,MOD,SWF
start_time: 20091128T210324Z
end_time: 20091130T035418Z
duration_time: PT111055S
period_start_day: 20091129
period_end_day: 20091129
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 28.0417
southernmost_latitude: 5.0
westernmost_longitude: 44.9583
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 64189
pct_valid_bins: 16.099
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170723T124630Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170723T124630Z: globcolour_l3_extract.sh -i...
input_files: MER_RR__2PRACR20091128_203523_000026312084_00...
input_files_reprocessings: MEGS/8.0 L,MEGS/8.0 L,MEGS/8.0 L,...>
In [9]:
# http://xarray.pydata.org/en/stable/data-structures.html
# modify the data structure to add a time as coordinates
ds_daily1_new = ds_daily1.assign_coords(time=pd.to_datetime('20091129'))
ds_daily1_new
Out[9]:
<xarray.Dataset>
Dimensions: (lat: 553, lon: 721)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 ...
time datetime64[ns] 2009-11-29
Data variables:
CHL1_mean (lat, lon) float64 nan nan nan nan nan nan nan nan nan nan ...
CHL1_flags (lat, lon) float64 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 ...
CHL1_error (lat, lon) float64 nan nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MERIS/MODIS/SeaWiFS p...
product_name: L3m_20091129__665648402_4_AVW-MERMODSWF_CHL1_...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: CHL1
parameter: Chlorophyll concentration
parameter_algo_list: OC4Me,,
publication: O'Reilly, J.E., and 24 Coauthors, 2000: SeaWi...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MER,MOD,SWF
start_time: 20091128T210324Z
end_time: 20091130T035418Z
duration_time: PT111055S
period_start_day: 20091129
period_end_day: 20091129
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 28.0417
southernmost_latitude: 5.0
westernmost_longitude: 44.9583
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 64189
pct_valid_bins: 16.099
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170723T124630Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170723T124630Z: globcolour_l3_extract.sh -i...
input_files: MER_RR__2PRACR20091128_203523_000026312084_00...
input_files_reprocessings: MEGS/8.0 L,MEGS/8.0 L,MEGS/8.0 L,...
In [10]:
ds_daily1_new.dims
Out[10]:
Frozen(SortedKeysDict({'lon': 721, 'lat': 553}))
In [11]:
ds_daily2
Out[11]:
<xarray.Dataset>
Dimensions: (lat: 553, lon: 721)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 ...
Data variables:
CHL1_mean (lat, lon) float64 nan nan nan nan nan nan nan nan nan nan ...
CHL1_flags (lat, lon) float64 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 ...
CHL1_error (lat, lon) float64 nan nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MODIS/VIIRSN product
product_name: L3m_20170711__665648402_4_AVW-MODVIR_CHL1_DAY...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: CHL1
parameter: Chlorophyll concentration
parameter_algo_list: ,
publication: O'Reilly, J.E., and 24 Coauthors, 2000: SeaWi...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MOD,VIR
start_time: 20170710T183404Z
end_time: 20170712T021758Z
duration_time: PT114235S
period_start_day: 20170711
period_end_day: 20170711
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 12.4583
southernmost_latitude: 5.0
westernmost_longitude: 60.0
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 8661
pct_valid_bins: 2.17224
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170721T201104Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170721T201104Z: globcolour_l3_extract.sh -i...
input_files: A2017191204000.L2_LAC_OC.nc,A2017191221500.L2...
input_files_reprocessings: 2014.0.1QL,2014.0.1QL,2014.0.1QL,2014.0.1QL,2...
In [12]:
ds_daily2_new = ds_daily2.assign_coords(time=pd.to_datetime('20170711'))
ds_daily2_new
ds_daily2_new.expand_dims('time')
Out[12]:
<xarray.Dataset>
Dimensions: (lat: 553, lon: 721, time: 1)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 ...
* time (time) datetime64[ns] 2017-07-11
Data variables:
CHL1_mean (time, lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
CHL1_flags (time, lat, lon) float64 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 ...
CHL1_error (time, lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MODIS/VIIRSN product
product_name: L3m_20170711__665648402_4_AVW-MODVIR_CHL1_DAY...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: CHL1
parameter: Chlorophyll concentration
parameter_algo_list: ,
publication: O'Reilly, J.E., and 24 Coauthors, 2000: SeaWi...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MOD,VIR
start_time: 20170710T183404Z
end_time: 20170712T021758Z
duration_time: PT114235S
period_start_day: 20170711
period_end_day: 20170711
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 12.4583
southernmost_latitude: 5.0
westernmost_longitude: 60.0
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 8661
pct_valid_bins: 2.17224
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170721T201104Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170721T201104Z: globcolour_l3_extract.sh -i...
input_files: A2017191204000.L2_LAC_OC.nc,A2017191221500.L2...
input_files_reprocessings: 2014.0.1QL,2014.0.1QL,2014.0.1QL,2014.0.1QL,2...
In [13]:
ds_daily1_new.assign_coords(time=pd.to_datetime('20091129'))
ds_daily1_new
ds_daily1_new.expand_dims('time')
Out[13]:
<xarray.Dataset>
Dimensions: (lat: 553, lon: 721, time: 1)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 ...
* time (time) datetime64[ns] 2009-11-29
Data variables:
CHL1_mean (time, lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
CHL1_flags (time, lat, lon) float64 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 ...
CHL1_error (time, lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MERIS/MODIS/SeaWiFS p...
product_name: L3m_20091129__665648402_4_AVW-MERMODSWF_CHL1_...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: CHL1
parameter: Chlorophyll concentration
parameter_algo_list: OC4Me,,
publication: O'Reilly, J.E., and 24 Coauthors, 2000: SeaWi...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MER,MOD,SWF
start_time: 20091128T210324Z
end_time: 20091130T035418Z
duration_time: PT111055S
period_start_day: 20091129
period_end_day: 20091129
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 28.0417
southernmost_latitude: 5.0
westernmost_longitude: 44.9583
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 64189
pct_valid_bins: 16.099
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170723T124630Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170723T124630Z: globcolour_l3_extract.sh -i...
input_files: MER_RR__2PRACR20091128_203523_000026312084_00...
input_files_reprocessings: MEGS/8.0 L,MEGS/8.0 L,MEGS/8.0 L,...
In [14]:
## no need to expand dim!!!
## can just combined and get dataarray on one variable fromt he dataset !!
ds_daily12 = xr.concat([ds_daily1_new.CHL1_mean, ds_daily2_new.CHL1_mean], 'time')
#ds_daily12.CHL1_mean.sel(time = '2009-11-29').plot()
#aa = ds_daily12.to_dataset()
ds_daily12.sel(time = '2009-11-29').plot()
ds_daily12
Out[14]:
<xarray.DataArray 'CHL1_mean' (time: 2, lat: 553, lon: 721)>
dask.array<concatenate, shape=(2, 553, 721), dtype=float64, chunksize=(1, 553, 721)>
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 27.8125 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 45.1875 ...
* time (time) datetime64[ns] 2009-11-29 2017-07-11
Attributes:
standard_name: mass_concentration_of_chlorophyll_a_in_sea_water
long_name: Chlorophyll concentration - Mean of the binned ...
units: mg/m3
pct_characterised_error: 43.31
In [ ]:
var = 'CHL1'
date_start = '20020428'
date_end = '20170711'
# reg-ex
# bottleneck on concatenation?
years = range(2002,2018)
In [72]:
prefix = 'L3m'
year = 2002
varname = 'CHL1'
freq = 'DAY'
import re
part1 = '%s_%g' % (prefix, year)
print(part1)
part2 = '%s_%s' %(varname, freq)
print(part2)
import os
files = os.listdir('.')
for name in files:
print(name)
#re.match()
#fname = re.match(r"%s_%s .*%g_%s\.nc$" % (prefix, year, varname, freq))
#%fname = '%s_%s*%g_%s.nc' % (prefix, year, varname, freq)
L3m_2002
CHL1_DAY
.DS_Store
.gitignore
.idea
.ipynb_checkpoints
2delete.ipynb
__pycache__
buoydata.py
buyodata
count_data.ipynb
data
data_collector_modisa_chla9km
data_collector_modisa_IopAdg443Giop_9km
data_collector_modisa_KD490_9km
data_collector_modisa_NSST11mu_9km
data_collector_modisa_PAR_9km
data_collector_modisa_RssAot869_9km
data_collector_seawifs_2delete
data_coverage_2D_interp_LDS_chlor.ipynb
data_coverage_2D_interp_LDS_chlorgithub.ipynb
data_coverage_8D_interp_LDS_chlor.ipynb
data_coverage_8D_interp_LDS_chlorgithub.ipynb
data_coverage_GlobColour_preprocess.ipynb
data_coverage_multidimensionalInterpolation
data_coverage_xarray_interpolation
data_globcolour
data_helpers_modisa_NSST11mu_9km.py
datetime_strftime.ipynb
df_chl_dist_out_2D_modisa.csv
df_LDS_2d.csv
dist2land_data
dist_to_coast.ipynb
download_arabian_sea.ipynb
experiment1_difflogC_regdist
gdp_float
readme
README.md
report_archive_20161205
roc_to_rocLogE_New.ipynb
test_downloader_modisa_NSST11mu_9km.py
test_OC_CCI.ipynb
tools
xarray_index_review.ipynb
yearly_plot_of_monthly_chlor_image
yearly_plot_of_weekly_trends
yearly_plot_of_weekly_trends_composite
In [29]:
range?
In [ ]:
in_dir
out_dir
var
subvar
varname
In [112]:
# drop variables
dset = xr.open_dataset('./data_globcolour/665648402.data/chl1/chl1_AVW/L3m_20091129__665648402_4_AVW-MERMODSWF_CHL1_DAY_00.nc', drop_variables = ['CHL1_flags','CHL1_error'])
dset
Out[112]:
<xarray.Dataset>
Dimensions: (lat: 553, lon: 721)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 27.8125 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 45.1875 ...
Data variables:
CHL1_mean (lat, lon) float64 nan nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MERIS/MODIS/SeaWiFS p...
product_name: L3m_20091129__665648402_4_AVW-MERMODSWF_CHL1_...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: CHL1
parameter: Chlorophyll concentration
parameter_algo_list: OC4Me,,
publication: O'Reilly, J.E., and 24 Coauthors, 2000: SeaWi...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MER,MOD,SWF
start_time: 20091128T210324Z
end_time: 20091130T035418Z
duration_time: PT111055S
period_start_day: 20091129
period_end_day: 20091129
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 28.0417
southernmost_latitude: 5.0
westernmost_longitude: 44.9583
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 64189
pct_valid_bins: 16.099
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170723T124630Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170723T124630Z: globcolour_l3_extract.sh -i...
input_files: MER_RR__2PRACR20091128_203523_000026312084_00...
input_files_reprocessings: MEGS/8.0 L,MEGS/8.0 L,MEGS/8.0 L,...
In [4]:
# Experiment 1
# preprocess all the file of one variable in batch one by one
import os
from tqdm import tqdm
dirnameprefix = '/Users/vyan2000/work_linux/2Archive/myproject/20161024xray_oceancolor/ocean_color-master/data_globcolour/665648402.data/'
dirname = dirnameprefix + 'test/'
files = os.listdir(dirname)
datasets = []
for name in tqdm(files):
# load each
nametime = name[4:12] # extract time, add specific'time' coordinate, concatenate
#print(nametime)
path = dirname + name
dset = xr.open_dataset(path, drop_variables = ['CHL1_flags','CHL1_error'])
dset_new = dset.assign_coords(time=pd.to_datetime(nametime))
#print(dset_new)
datasets.append(dset_new)
dataset_chl = xr.concat(datasets, dim = 'time')
outdir = dirnameprefix + 'timeConcatenatedNC/'
dataset_chl.to_netcdf(outdir+'test_chl1.nc', mode='w')
dataset_chl.close()
# experiment 1: ** test **
dset = xr.open_dataset(outdir + 'test_chl1.nc')
print(dset)
#dset.close()
100%|██████████| 2/2 [00:00<00:00, 96.77it/s]
<xarray.Dataset>
Dimensions: (lat: 553, lon: 721, time: 2)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 27.8125 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 45.1875 ...
* time (time) datetime64[ns] 2002-04-28 2002-04-29
Data variables:
CHL1_mean (time, lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MERIS/SeaWiFS product
product_name: L3m_20020428__665648402_4_AVW-MERSWF_CHL1_DAY...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: CHL1
parameter: Chlorophyll concentration
parameter_algo_list: ,
publication: O'Reilly, J.E., and 24 Coauthors, 2000: SeaWi...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MER,SWF
start_time: 20020427T224343Z
end_time: 20020429T004709Z
duration_time: PT93807S
period_start_day: 20020428
period_end_day: 20020428
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 26.7917
southernmost_latitude: 5.0
westernmost_longitude: 49.75
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 62260
pct_valid_bins: 15.6152
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170723T001655Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170723T001655Z: globcolour_l3_extract.sh -i...
input_files: S2002117220453.L2_GAC_OC.nc,S2002117234340.L2...
input_files_reprocessings: 2014.0,2014.0,2014.0,2014.0,2014.0,2014.0,201...
In [24]:
# Experiment 2
# preprocess all the file of one variable in batch one by one
import os
from tqdm import tqdm
dirnameprefix = '/Users/vyan2000/work_linux/2Archive/myproject/20161024xray_oceancolor/ocean_color-master/data_globcolour/665648402.data/'
dirname = dirnameprefix + 'test2/'
files = os.listdir(dirname)
datasets = []
for name in tqdm(files):
# load each
nametime = name[4:12] # extract time, add specific'time' coordinate, concatenate
#print(nametime)
path = dirname + name
dset = xr.open_dataset(path)
#dset = xr.open_dataset(path, drop_variables = ['CHL1_flags','CHL1_error'])
dset_new = dset.assign_coords(time=pd.to_datetime(nametime))
#print(dset_new)
datasets.append(dset_new)
dataset_xxx = xr.concat(datasets, dim = 'time')
dataset_xxx
100%|██████████| 1/1 [00:00<00:00, 67.57it/s]
Out[24]:
<xarray.Dataset>
Dimensions: (lat: 553, lon: 721, time: 1)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 ...
* time (time) datetime64[ns] 2002-04-28
Data variables:
T865_mean (time, lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
T865_flags (time, lat, lon) float64 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 ...
T865_error (time, lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MERIS/SeaWiFS product
product_name: L3m_20020428__665648402_4_AVW-MERSWF_T865_DAY...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: T865
parameter: Aerosol optical thickness over water
parameter_algo_list: ,
publication: Gordon, H.R., 1997. Atmospheric correction of...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MER,SWF
start_time: 20020427T224343Z
end_time: 20020429T004709Z
duration_time: PT93807S
period_start_day: 20020428
period_end_day: 20020428
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 26.7917
southernmost_latitude: 5.0
westernmost_longitude: 49.75
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 62260
pct_valid_bins: 15.6152
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170722T134814Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170722T134814Z: globcolour_l3_extract.sh -i...
input_files: S2002117220453.L2_GAC_OC.nc,S2002117234340.L2...
input_files_reprocessings: 2014.0,2014.0,2014.0,2014.0,2014.0,2014.0,201...
In [25]:
#dataset_xxx.sel('KD490-LEE_flags')
aa = dataset_xxx.rename({'T865_mean':'t865'})
aa.t865.plot()
Out[25]:
<matplotlib.collections.QuadMesh at 0x1285e6a58>
In [9]:
#ulimit -n 10000
!ulimit -a # maximum allowed open files
core file size (blocks, -c) 0
data seg size (kbytes, -d) unlimited
file size (blocks, -f) unlimited
max locked memory (kbytes, -l) unlimited
max memory size (kbytes, -m) unlimited
open files (-n) 252
pipe size (512 bytes, -p) 1
stack size (kbytes, -s) 8192
cpu time (seconds, -t) unlimited
max user processes (-u) 709
virtual memory (kbytes, -v) unlimited
In [4]:
# Experiment 3
# process all the file of CHL1 using Experiment 1
# process all the file of one variable in batch one by one
import os
from tqdm import tqdm
varname = 'chl1'
dirnameprefix = '/Users/vyan2000/work_linux/2Archive/myproject/20161024xray_oceancolor/ocean_color-master/data_globcolour/665648402.data/'
dirname = dirnameprefix + varname + '/chl1_AVW/'
files = os.listdir(dirname)
datasets = []
for name in tqdm(files):
# load each
nametime = name[4:12] # extract time, add specific'time' coordinate, concatenate
#print(nametime)
path = dirname + name
dset = xr.open_dataset(path, drop_variables = ['CHL1_flags','CHL1_error'])
dset_new = dset.assign_coords(time=pd.to_datetime(nametime))
datasets.append(dset_new)
dataset_chl = xr.concat(datasets, dim = 'time')
print(dataset_chl)
#outdir = dirnameprefix + 'timeConcatenatedNC/'
#dataset_chl.to_netcdf(outdir+'chl1_GlobCol_timeConcatenated.nc', mode='w')
#dataset_chl.close()
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20040823
20040824
20040825
20040826
20040827
20040828
20040829
20040830
20040831
20040901
16%|█▌ | 870/5538 [00:11<01:01, 75.45it/s]
20040902
20040903
20040904
20040905
20040906
20040907
20040908
20040909
20040910
20040911
20040912
20040913
20040914
20040915
20040916
20040917
20040918
16%|█▌ | 878/5538 [00:11<01:04, 72.80it/s]
20040919
20040920
20040921
20040922
20040923
20040924
20040925
20040926
20040927
20040928
20040929
20040930
20041001
16%|█▌ | 895/5538 [00:11<01:01, 74.94it/s]
20041002
20041003
20041004
20041005
20041006
20041007
20041008
20041009
20041010
20041011
20041012
20041013
20041014
20041015
20041016
20041017
20041018
20041019
16%|█▋ | 912/5538 [00:11<01:00, 75.98it/s]
20041020
20041021
20041022
20041023
20041024
20041025
20041026
20041027
20041028
20041029
20041030
20041031
20041101
20041102
20041103
20041104
20041105
17%|█▋ | 929/5538 [00:11<01:01, 75.13it/s]
20041106
20041107
20041108
20041109
20041110
20041111
20041112
20041113
20041114
20041115
20041116
20041117
20041118
20041119
20041120
17%|█▋ | 945/5538 [00:12<01:06, 68.90it/s]
20041121
20041122
20041123
20041124
20041125
20041126
20041127
20041128
20041129
20041130
20041201
20041202
20041203
20041204
20041205
17%|█▋ | 962/5538 [00:12<01:06, 68.39it/s]
20041206
20041207
20041208
20041209
20041210
20041211
20041212
20041213
20041214
20041215
20041216
20041217
20041218
20041219
18%|█▊ | 977/5538 [00:12<01:05, 69.27it/s]
20041220
20041221
20041222
20041223
20041224
20041225
20041226
20041227
20041228
20041229
20041230
20041231
20050101
20050102
18%|█▊ | 991/5538 [00:12<01:06, 68.85it/s]
20050103
20050104
20050105
20050106
20050107
20050108
20050109
20050110
20050111
20050112
20050113
20050114
20050115
20050116
20050117
18%|█▊ | 1006/5538 [00:12<01:06, 68.29it/s]
20050118
20050119
20050120
20050121
20050122
20050123
20050124
20050125
20050126
20050127
20050128
20050129
20050130
20050131
20050201
18%|█▊ | 1023/5538 [00:13<01:00, 74.80it/s]
20050202
20050203
20050204
20050205
20050206
20050207
20050208
20050209
20050210
20050211
20050212
20050213
20050214
20050215
20050216
20050217
20050218
20050219
20050220
19%|█▉ | 1040/5538 [00:13<00:58, 77.43it/s]
20050221
20050222
20050223
20050224
20050225
20050226
20050227
20050228
20050301
20050302
20050303
20050304
20050305
20050306
20050307
20050308
19%|█▉ | 1057/5538 [00:13<00:59, 75.10it/s]
20050309
20050310
20050311
20050312
20050313
20050314
20050315
20050316
20050317
20050318
20050319
20050320
20050321
20050322
20050323
20050324
19%|█▉ | 1074/5538 [00:13<01:08, 65.29it/s]
20050325
20050326
20050327
20050328
20050329
20050330
20050331
20050401
20050402
20050403
20050404
20050405
20050406
20050407
20050408
20050409
20050410
20%|█▉ | 1090/5538 [00:14<01:03, 70.28it/s]
20050411
20050412
20050413
20050414
20050415
20050416
20050417
20050418
20050419
20050420
20050421
20050422
20050423
20050424
20050425
20050426
20%|█▉ | 1106/5538 [00:14<01:02, 71.09it/s]
20050427
20050428
20050429
20050430
20050501
20050502
20050503
20050504
20050505
20050506
20050507
20050508
20050509
20050510
20050511
20%|██ | 1123/5538 [00:14<00:59, 74.26it/s]
20050512
20050513
20050514
20050515
20050516
20050517
20050518
20050519
20050520
20050521
20050522
20050523
20050524
20050525
20050526
20050527
20050528
21%|██ | 1141/5538 [00:14<00:54, 80.64it/s]
20050529
20050530
20050531
20050601
20050602
20050603
20050604
20050605
20050606
20050607
20050608
20050609
20050610
20050611
20050612
20050613
20050614
20050615
21%|██ | 1159/5538 [00:14<00:51, 84.51it/s]
20050616
20050617
20050618
20050619
20050620
20050621
20050622
20050623
20050624
20050625
20050626
20050627
20050628
20050629
20050630
20050701
20050702
20050703
20050704
21%|██▏ | 1177/5538 [00:15<00:52, 82.92it/s]
20050705
20050706
20050707
20050708
20050709
20050710
20050711
20050712
20050713
20050714
20050715
20050716
20050717
20050718
20050719
20050720
20050721
22%|██▏ | 1196/5538 [00:15<00:49, 88.16it/s]
20050722
20050723
20050724
20050725
20050726
20050727
20050728
20050729
20050730
20050731
20050801
20050802
20050803
20050804
20050805
20050806
20050807
20050808
20050809
20050810
22%|██▏ | 1215/5538 [00:15<00:47, 90.95it/s]
20050811
20050812
20050813
20050814
20050815
20050816
20050817
20050818
20050819
20050820
20050821
20050822
20050823
20050824
20050825
20050826
20050827
20050828
20050829
20050830
22%|██▏ | 1235/5538 [00:15<00:46, 92.43it/s]
20050831
20050901
20050902
20050903
20050904
20050905
20050906
20050907
20050908
20050909
20050910
20050911
20050912
20050913
20050914
20050915
20050916
20050917
20050918
20050919
23%|██▎ | 1255/5538 [00:16<00:46, 92.24it/s]
20050920
20050921
20050922
20050923
20050924
20050925
20050926
20050927
20050928
20050929
20050930
20051001
20051002
20051003
20051004
20051005
20051006
20051007
20051008
23%|██▎ | 1275/5538 [00:16<00:45, 92.99it/s]
20051009
20051010
20051011
20051012
20051013
20051014
20051015
20051016
20051017
20051018
20051019
20051020
20051021
20051022
20051023
20051024
20051025
20051026
20051027
20051028
23%|██▎ | 1295/5538 [00:16<00:45, 93.32it/s]
20051029
20051030
20051031
20051101
20051102
20051103
20051104
20051105
20051106
20051107
20051108
20051109
20051110
20051111
20051112
20051113
20051114
20051115
20051116
20051117
24%|██▎ | 1315/5538 [00:16<00:44, 94.61it/s]
20051118
20051119
20051120
20051121
20051122
20051123
20051124
20051125
20051126
20051127
20051128
20051129
20051130
20051201
20051202
20051203
20051204
20051205
20051206
20051207
24%|██▍ | 1335/5538 [00:16<00:44, 94.03it/s]
20051208
20051209
20051210
20051211
20051212
20051213
20051214
20051215
20051216
20051217
20051218
20051219
20051220
20051221
20051222
20051223
20051224
20051225
20051226
20051227
24%|██▍ | 1355/5538 [00:17<00:44, 94.20it/s]
20051228
20051229
20051230
20051231
20060101
20060102
20060103
20060104
20060105
20060106
20060107
20060108
20060109
20060110
20060111
20060112
20060113
20060114
20060115
20060116
25%|██▍ | 1375/5538 [00:17<00:45, 91.39it/s]
20060117
20060118
20060119
20060120
20060121
20060122
20060123
20060124
20060125
20060126
20060127
20060128
20060129
20060130
20060131
20060201
20060202
20060203
20060204
25%|██▌ | 1395/5538 [00:17<00:46, 89.94it/s]
20060205
20060206
20060207
20060208
20060209
20060210
20060211
20060212
20060213
20060214
20060215
20060216
20060217
20060218
20060219
20060220
20060221
20060222
25%|██▌ | 1405/5538 [00:17<00:45, 90.04it/s]
20060223
20060224
20060225
20060226
20060227
20060228
20060301
20060302
20060303
20060304
20060305
20060306
20060307
20060308
20060309
20060310
20060311
20060312
20060313
20060314
26%|██▌ | 1425/5538 [00:17<00:48, 84.30it/s]
20060315
20060316
20060317
20060318
20060319
20060320
20060321
20060322
20060323
20060324
20060325
20060326
20060327
20060328
20060329
20060330
20060331
26%|██▌ | 1444/5538 [00:18<00:46, 87.26it/s]
20060401
20060402
20060403
20060404
20060405
20060406
20060407
20060408
20060409
20060410
20060411
20060412
20060413
20060414
20060415
20060416
20060417
20060418
20060419
26%|██▋ | 1464/5538 [00:18<00:46, 88.53it/s]
20060420
20060421
20060422
20060423
20060424
20060425
20060426
20060427
20060428
20060429
20060430
20060501
20060502
20060503
20060504
20060505
20060506
20060507
27%|██▋ | 1482/5538 [00:18<00:50, 81.06it/s]
20060508
20060509
20060510
20060511
20060512
20060513
20060514
20060515
20060516
20060517
20060518
20060519
20060520
20060521
20060522
20060523
27%|██▋ | 1499/5538 [00:18<00:53, 75.00it/s]
20060524
20060525
20060526
20060527
20060528
20060529
20060530
20060531
20060601
20060602
20060603
20060604
20060605
20060606
20060607
27%|██▋ | 1508/5538 [00:18<00:52, 77.49it/s]
20060608
20060609
20060610
20060611
20060612
20060613
20060614
20060615
20060616
20060617
20060618
20060619
20060620
20060621
20060622
20060623
28%|██▊ | 1524/5538 [00:19<00:56, 70.75it/s]
20060624
20060625
20060626
20060627
20060628
20060629
20060630
20060701
20060702
20060703
20060704
20060705
20060706
20060707
20060708
28%|██▊ | 1540/5538 [00:19<00:58, 68.54it/s]
20060709
20060710
20060711
20060712
20060713
20060714
20060715
20060716
20060717
20060718
20060719
20060720
20060721
20060722
20060723
28%|██▊ | 1556/5538 [00:19<00:56, 70.44it/s]
20060724
20060725
20060726
20060727
20060728
20060729
20060730
20060731
20060801
20060802
20060803
20060804
20060805
20060806
20060807
28%|██▊ | 1572/5538 [00:19<00:57, 69.45it/s]
20060808
20060809
20060810
20060811
20060812
20060813
20060814
20060815
20060816
20060817
20060818
20060819
20060820
20060821
20060822
29%|██▊ | 1586/5538 [00:20<00:58, 67.42it/s]
20060823
20060824
20060825
20060826
20060827
20060828
20060829
20060830
20060831
20060901
20060902
20060903
20060904
20060905
29%|██▉ | 1600/5538 [00:20<01:02, 63.18it/s]
20060906
20060907
20060908
20060909
20060910
20060911
20060912
20060913
20060914
20060915
20060916
20060917
20060918
29%|██▉ | 1614/5538 [00:20<01:03, 61.42it/s]
20060919
20060920
20060921
20060922
20060923
20060924
20060925
20060926
20060927
20060928
20060929
20060930
20061001
29%|██▉ | 1629/5538 [00:20<01:00, 64.36it/s]
20061002
20061003
20061004
20061005
20061006
20061007
20061008
20061009
20061010
20061011
20061012
20061013
20061014
20061015
30%|██▉ | 1643/5538 [00:20<00:59, 65.96it/s]
20061016
20061017
20061018
20061019
20061020
20061021
20061022
20061023
20061024
20061025
20061026
20061027
20061028
20061029
20061030
30%|██▉ | 1658/5538 [00:21<00:57, 67.64it/s]
20061031
20061101
20061102
20061103
20061104
20061105
20061106
20061107
20061108
20061109
20061110
20061111
20061112
20061113
20061114
30%|███ | 1673/5538 [00:21<00:57, 67.74it/s]
20061115
20061116
20061117
20061118
20061119
20061120
20061121
20061122
20061123
20061124
20061125
20061126
20061127
20061128
31%|███ | 1690/5538 [00:21<00:52, 72.69it/s]
20061129
20061130
20061201
20061202
20061203
20061204
20061205
20061206
20061207
20061208
20061209
20061210
20061211
20061212
20061213
20061214
20061215
20061216
31%|███ | 1706/5538 [00:21<00:51, 74.69it/s]
20061217
20061218
20061219
20061220
20061221
20061222
20061223
20061224
20061225
20061226
20061227
20061228
20061229
20061230
20061231
31%|███ | 1714/5538 [00:21<00:55, 69.50it/s]
20070101
20070102
20070103
20070104
20070105
20070106
20070107
20070108
20070109
20070110
20070111
20070112
20070113
20070114
31%|███ | 1729/5538 [00:22<00:58, 65.12it/s]
20070115
20070116
20070117
20070118
20070119
20070120
20070121
20070122
20070123
20070124
20070125
20070126
20070127
20070128
20070129
32%|███▏ | 1746/5538 [00:22<00:53, 71.02it/s]
20070130
20070131
20070201
20070202
20070203
20070204
20070205
20070206
20070207
20070208
20070209
20070210
20070211
20070212
20070213
20070214
20070215
20070216
32%|███▏ | 1764/5538 [00:22<00:49, 76.60it/s]
20070217
20070218
20070219
20070220
20070221
20070222
20070223
20070224
20070225
20070226
20070227
20070228
20070301
20070302
20070303
20070304
20070305
20070306
32%|███▏ | 1783/5538 [00:22<00:47, 79.08it/s]
20070307
20070308
20070309
20070310
20070311
20070312
20070313
20070314
20070315
20070316
20070317
20070318
20070319
20070320
20070321
20070322
20070323
33%|███▎ | 1801/5538 [00:23<00:47, 78.08it/s]
20070324
20070325
20070326
20070327
20070328
20070329
20070330
20070331
20070401
20070402
20070403
20070404
20070405
20070406
20070407
20070408
20070409
33%|███▎ | 1819/5538 [00:23<00:44, 82.73it/s]
20070410
20070411
20070412
20070413
20070414
20070415
20070416
20070417
20070418
20070419
20070420
20070421
20070422
20070423
20070424
20070425
20070426
20070427
33%|███▎ | 1837/5538 [00:23<00:44, 83.78it/s]
20070428
20070429
20070430
20070501
20070502
20070503
20070504
20070505
20070506
20070507
20070508
20070509
20070510
20070511
20070512
20070513
20070514
20070515
33%|███▎ | 1855/5538 [00:23<00:43, 85.32it/s]
20070516
20070517
20070518
20070519
20070520
20070521
20070522
20070523
20070524
20070525
20070526
20070527
20070528
20070529
20070530
20070531
20070601
20070602
20070603
34%|███▍ | 1873/5538 [00:23<00:42, 86.67it/s]
20070604
20070605
20070606
20070607
20070608
20070609
20070610
20070611
20070612
20070613
20070614
20070615
20070616
20070617
20070618
20070619
20070620
20070621
20070622
34%|███▍ | 1892/5538 [00:24<00:43, 84.44it/s]
20070623
20070624
20070625
20070626
20070627
20070628
20070629
20070630
20070701
20070702
20070703
20070704
20070705
20070706
20070707
20070708
34%|███▍ | 1910/5538 [00:24<00:45, 80.48it/s]
20070709
20070710
20070711
20070712
20070713
20070714
20070715
20070716
20070717
20070718
20070719
20070720
20070721
20070722
20070723
20070724
35%|███▍ | 1927/5538 [00:24<00:46, 78.08it/s]
20070725
20070726
20070727
20070728
20070729
20070730
20070731
20070801
20070802
20070803
20070804
20070805
20070806
20070807
20070808
35%|███▌ | 1943/5538 [00:24<00:46, 77.43it/s]
20070809
20070810
20070811
20070812
20070813
20070814
20070815
20070816
20070817
20070818
20070819
20070820
20070821
20070822
20070823
20070824
20070825
20070826
35%|███▌ | 1959/5538 [00:25<00:46, 77.01it/s]
20070827
20070828
20070829
20070830
20070831
20070901
20070902
20070903
20070904
20070905
20070906
20070907
20070908
20070909
20070910
20070911
36%|███▌ | 1976/5538 [00:25<00:45, 78.26it/s]
20070912
20070913
20070914
20070915
20070916
20070917
20070918
20070919
20070920
20070921
20070922
20070923
20070924
20070925
20070926
20070927
20070928
36%|███▌ | 1992/5538 [00:25<00:45, 77.65it/s]
20070929
20070930
20071001
20071002
20071003
20071004
20071005
20071006
20071007
20071008
20071009
20071010
20071011
20071012
20071013
20071014
20071015
36%|███▋ | 2008/5538 [00:25<00:45, 77.34it/s]
20071016
20071017
20071018
20071019
20071020
20071021
20071022
20071023
20071024
20071025
20071026
20071027
20071028
20071029
20071030
20071031
20071101
37%|███▋ | 2025/5538 [00:25<00:45, 77.91it/s]
20071102
20071103
20071104
20071105
20071106
20071107
20071108
20071109
20071110
20071111
20071112
20071113
20071114
20071115
20071116
20071117
20071118
37%|███▋ | 2042/5538 [00:26<00:44, 78.28it/s]
20071119
20071120
20071121
20071122
20071123
20071124
20071125
20071126
20071127
20071128
20071129
20071130
20071201
20071202
20071203
20071204
20071205
37%|███▋ | 2058/5538 [00:26<00:44, 78.45it/s]
20071206
20071207
20071208
20071209
20071210
20071211
20071212
20071213
20071214
20071215
20071216
20071217
20071218
20071219
20071220
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37%|███▋ | 2074/5538 [00:26<00:44, 77.84it/s]
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38%|███▊ | 2091/5538 [00:26<00:43, 78.70it/s]
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38%|███▊ | 2099/5538 [00:26<00:55, 61.59it/s]
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38%|███▊ | 2116/5538 [00:27<00:51, 66.66it/s]
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39%|███▊ | 2133/5538 [00:27<00:48, 70.01it/s]
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39%|███▉ | 2149/5538 [00:27<00:47, 71.83it/s]
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39%|███▉ | 2165/5538 [00:27<00:46, 73.12it/s]
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39%|███▉ | 2181/5538 [00:28<00:47, 70.77it/s]
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40%|███▉ | 2197/5538 [00:28<00:46, 71.24it/s]
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40%|███▉ | 2213/5538 [00:28<00:47, 70.09it/s]
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40%|████ | 2221/5538 [00:28<00:49, 66.93it/s]
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40%|████ | 2235/5538 [00:28<00:52, 62.44it/s]
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41%|████ | 2249/5538 [00:29<00:51, 64.15it/s]
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41%|████ | 2265/5538 [00:29<00:49, 66.48it/s]
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41%|████ | 2279/5538 [00:29<00:52, 62.30it/s]
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41%|████▏ | 2292/5538 [00:29<00:55, 58.86it/s]
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42%|████▏ | 2304/5538 [00:29<00:57, 55.98it/s]
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42%|████▏ | 2317/5538 [00:30<00:56, 57.41it/s]
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42%|████▏ | 2329/5538 [00:30<00:57, 55.62it/s]
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42%|████▏ | 2342/5538 [00:30<00:55, 57.11it/s]
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43%|████▎ | 2355/5538 [00:30<00:53, 59.20it/s]
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43%|████▎ | 2367/5538 [00:31<00:53, 59.10it/s]
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43%|████▎ | 2379/5538 [00:31<00:56, 56.15it/s]
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43%|████▎ | 2391/5538 [00:31<00:57, 55.04it/s]
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43%|████▎ | 2403/5538 [00:31<00:56, 55.70it/s]
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43%|████▎ | 2409/5538 [00:31<00:59, 52.72it/s]
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44%|████▍ | 2423/5538 [00:32<00:54, 57.32it/s]
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44%|████▍ | 2436/5538 [00:32<00:55, 55.56it/s]
20081224
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44%|████▍ | 2450/5538 [00:32<00:51, 60.23it/s]
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45%|████▍ | 2465/5538 [00:32<00:46, 65.87it/s]
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45%|████▍ | 2480/5538 [00:32<00:44, 68.63it/s]
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45%|████▌ | 2497/5538 [00:33<00:46, 65.58it/s]
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45%|████▌ | 2512/5538 [00:33<00:47, 63.44it/s]
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46%|████▌ | 2526/5538 [00:33<00:48, 62.49it/s]
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20090401
46%|████▌ | 2541/5538 [00:33<00:45, 65.73it/s]
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46%|████▌ | 2557/5538 [00:34<00:42, 70.02it/s]
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46%|████▋ | 2573/5538 [00:34<00:42, 69.75it/s]
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47%|████▋ | 2588/5538 [00:34<00:42, 69.04it/s]
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47%|████▋ | 2602/5538 [00:34<00:45, 64.01it/s]
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47%|████▋ | 2609/5538 [00:34<00:45, 64.64it/s]
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47%|████▋ | 2623/5538 [00:35<00:47, 61.36it/s]
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48%|████▊ | 2637/5538 [00:35<00:47, 61.10it/s]
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48%|████▊ | 2650/5538 [00:35<00:50, 57.20it/s]
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48%|████▊ | 2662/5538 [00:35<00:50, 57.15it/s]
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48%|████▊ | 2674/5538 [00:36<00:53, 53.75it/s]
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49%|████▊ | 2686/5538 [00:36<00:51, 55.54it/s]
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49%|████▊ | 2698/5538 [00:36<00:51, 54.98it/s]
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49%|████▉ | 2711/5538 [00:36<00:51, 54.91it/s]
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49%|████▉ | 2726/5538 [00:36<00:47, 58.95it/s]
20091009
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50%|████▉ | 2742/5538 [00:37<00:43, 64.39it/s]
20091023
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50%|████▉ | 2757/5538 [00:37<00:43, 64.65it/s]
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50%|█████ | 2771/5538 [00:37<00:43, 63.73it/s]
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50%|█████ | 2785/5538 [00:37<00:44, 61.37it/s]
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51%|█████ | 2799/5538 [00:38<00:43, 63.09it/s]
20091218
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51%|█████ | 2813/5538 [00:38<00:44, 61.55it/s]
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51%|█████ | 2820/5538 [00:38<00:45, 59.76it/s]
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51%|█████ | 2833/5538 [00:38<00:46, 57.92it/s]
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51%|█████▏ | 2846/5538 [00:38<00:46, 58.06it/s]
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52%|█████▏ | 2865/5538 [00:39<00:45, 58.48it/s]
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52%|█████▏ | 2877/5538 [00:39<00:47, 56.30it/s]
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52%|█████▏ | 2883/5538 [00:39<00:48, 55.01it/s]
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52%|█████▏ | 2895/5538 [00:39<00:49, 53.28it/s]
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53%|█████▎ | 2910/5538 [00:40<00:48, 54.74it/s]
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53%|█████▎ | 2922/5538 [00:40<00:50, 51.91it/s]
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53%|█████▎ | 2934/5538 [00:40<00:47, 55.11it/s]
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53%|█████▎ | 2949/5538 [00:40<00:41, 62.20it/s]
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54%|█████▎ | 2964/5538 [00:40<00:38, 66.42it/s]
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54%|█████▍ | 2978/5538 [00:41<00:38, 65.75it/s]
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54%|█████▍ | 2992/5538 [00:41<00:38, 65.82it/s]
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54%|█████▍ | 3006/5538 [00:41<00:38, 66.35it/s]
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55%|█████▍ | 3021/5538 [00:41<00:37, 66.63it/s]
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55%|█████▍ | 3035/5538 [00:41<00:38, 65.72it/s]
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55%|█████▌ | 3049/5538 [00:42<00:37, 65.76it/s]
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55%|█████▌ | 3064/5538 [00:42<00:38, 64.71it/s]
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56%|█████▌ | 3078/5538 [00:42<00:39, 61.50it/s]
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56%|█████▌ | 3092/5538 [00:42<00:39, 61.87it/s]
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56%|█████▌ | 3108/5538 [00:43<00:35, 68.72it/s]
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56%|█████▋ | 3122/5538 [00:43<00:37, 63.98it/s]
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57%|█████▋ | 3129/5538 [00:43<00:40, 59.80it/s]
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57%|█████▋ | 3136/5538 [00:43<00:58, 40.85it/s]
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57%|█████▋ | 3147/5538 [00:43<00:53, 44.85it/s]
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57%|█████▋ | 3153/5538 [00:44<00:50, 46.96it/s]
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57%|█████▋ | 3167/5538 [00:44<00:44, 52.79it/s]
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57%|█████▋ | 3183/5538 [00:44<00:41, 56.54it/s]
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<xarray.Dataset>
Dimensions: (lat: 553, lon: 721, time: 5538)
Coordinates:
* lat (lat) float32 28.0208 27.9792 27.9375 27.8958 27.8542 27.8125 ...
* lon (lon) float32 44.9792 45.0208 45.0625 45.1042 45.1458 45.1875 ...
* time (time) datetime64[ns] 2002-04-28 2002-04-29 2002-04-30 ...
Data variables:
CHL1_mean (time, lat, lon) float64 nan nan nan nan nan nan nan nan nan ...
Attributes:
Conventions: CF-1.4
title: GlobColour daily merged MERIS/SeaWiFS product
product_name: L3m_20020428__665648402_4_AVW-MERSWF_CHL1_DAY...
product_type: day
product_version: 2016.1
product_level: 3
parameter_code: CHL1
parameter: Chlorophyll concentration
parameter_algo_list: ,
publication: O'Reilly, J.E., and 24 Coauthors, 2000: SeaWi...
site_name: 665648402
sensor_name: WEIGHTED_AVERAGING
sensor: Merged data - weighted mean
sensor_name_list: MER,SWF
start_time: 20020427T224343Z
end_time: 20020429T004709Z
duration_time: PT93807S
period_start_day: 20020428
period_end_day: 20020428
period_duration_day: P1D
grid_type: Equirectangular
spatial_resolution: 4.63831
nb_equ_bins: 721
registration: 5
lat_step: 0.0416667
lon_step: 0.0416667
earth_radius: 6378.137
max_north_grid: 28.0417
max_south_grid: 5.0
max_west_grid: 44.9583
max_east_grid: 75.0
northernmost_latitude: 26.7917
southernmost_latitude: 5.0
westernmost_longitude: 49.75
easternmost_longitude: 75.0
nb_grid_bins: 398713
nb_bins: 398713
pct_bins: 100.0
nb_valid_bins: 62260
pct_valid_bins: 15.6152
software_name: globcolour_l3_extract
software_version: 2016.1
institution: ACRI
processing_time: 20170723T001655Z
netcdf_version: 4.3.3.1 of Jul 8 2016 18:15:50 $
DPM_reference: GC-UD-ACRI-PUG
IODD_reference: GC-UD-ACRI-PUG
references: http://www.globcolour.info
contact: service@globcolour.info
copyright: Copyright ACRI-ST - GlobColour. GlobColour ha...
history: 20170723T001655Z: globcolour_l3_extract.sh -i...
input_files: S2002117220453.L2_GAC_OC.nc,S2002117234340.L2...
input_files_reprocessings: 2014.0,2014.0,2014.0,2014.0,2014.0,2014.0,201...
In [5]:
# experiment 2: ** test **
# it takes too much hard disk space
'''
dirnameprefix = '/Users/vyan2000/work_linux/2Archive/myproject/20161024xray_oceancolor/ocean_color-master/data_globcolour/665648402.data/'
outdir = dirnameprefix + 'timeConcatenatedNC/'
#os.listdir(outdir)
#dset = xr.open_dataset(outdir + 'Surface_METAR_20170712_0000.nc')
dset = xr.open_dataset(outdir + 'chl1_GlobCol_timeConcatenated.nc')
print(dset)
dset.close()
#dset
'''
Out[5]:
<xarray.Dataset>
Dimensions: (recNum: 86703, station: 5021)
Dimensions without coordinates: recNum, station
Data variables:
minimum_time_observation datetime64[ns] 2017-07-11T23:45:00
maximum_time_observation datetime64[ns] 2017-07-12T23:28:00
number_stations int32 5021
lastChild (station) float64 8.662e+04 nan 8.662e+04 ...
numChildren (station) float64 42.0 nan 40.0 25.0 nan ...
station_id (station) |S4 b'04V' b'07G' b'0CO' b'0J4' ...
station_description (station) |S39 b'SAGUACHE MUNI, CO US' ...
wmo_id (station) float64 nan nan 1e+06 1e+06 1e+06 ...
latitude (station) float32 38.1 42.57 39.79 31.04 ...
longitude (station) float32 -106.17 -84.81 -105.76 ...
altitude (station) int32 2385 272 3807 96 65 94 238 ...
parent_index (recNum) int32 2767 4410 4066 2234 2845 219 ...
prevChild (recNum) float64 nan nan nan nan nan nan ...
report_id (recNum) object b'KPAM' b'CWPF' b'VNKT' ...
time_observation (recNum) datetime64[ns] 2017-07-11T23:45:00 ...
time_nominal (recNum) datetime64[ns] 2017-07-12 ...
wind_from_direction (recNum) float64 100.0 180.0 nan 190.0 0.0 ...
wind_speed (recNum) float64 6.688 6.173 1.029 4.63 0.0 ...
wind_gust (recNum) float64 nan nan nan nan nan nan ...
wind_from_direction_min (recNum) float64 nan nan nan nan nan nan ...
wind_from_direction_max (recNum) float64 nan nan nan nan nan nan ...
wind_peak_from_direction (recNum) float64 nan nan nan nan nan 270.0 ...
wind_peak_speed (recNum) float64 nan nan nan nan nan 29.0 ...
wind_peak_time (recNum) object nan nan nan nan nan ...
visibility_in_air (recNum) float64 10.0 nan nan 2.0 9.0 8.0 ...
visibility_in_air_direction (recNum) object nan nan nan nan nan nan nan ...
visibility_in_air_vertical (recNum) float64 nan nan nan nan nan nan ...
visibility_in_air_surface (recNum) float64 nan nan nan nan nan nan ...
low_cloud_area_fraction (recNum) float64 1.0 nan 0.125 nan 0.75 ...
low_cloud_base_altitude (recNum) float64 690.0 nan 300.0 nan 870.0 ...
middle_cloud_area_fraction (recNum) float64 nan nan 0.375 nan 1.0 0.75 ...
middle_cloud_base_altitude (recNum) float64 nan nan 900.0 nan 2.7e+03 ...
high_cloud_area_fraction (recNum) float64 nan nan 0.75 nan nan 1.0 ...
high_cloud_base_altitude (recNum) float64 nan nan 3e+03 nan nan ...
cloud_area_fraction (recNum) float64 1.0 nan 0.75 0.0 1.0 1.0 ...
air_temperature (recNum) float64 27.0 15.0 20.0 32.0 17.0 ...
dew_point_temperature (recNum) float64 23.0 10.0 18.0 22.0 10.0 ...
inches_ALTIM (recNum) float64 30.07 nan nan 29.73 29.9 ...
hectoPascal_ALTIM (recNum) float64 nan nan 1.012e+03 nan nan ...
air_pressure_at_sea_level (recNum) float64 1.019e+03 nan nan nan nan ...
weather (recNum) object nan nan nan b'HZ ' nan ...
snowfall_amount_last_hour (recNum) float64 nan nan nan nan nan nan ...
snowfall_amount (recNum) float64 nan nan nan nan nan nan ...
precipitation_amount_hourly (recNum) float64 nan nan nan nan nan 0.0 ...
precipitation_amount_24 (recNum) float64 nan nan nan nan nan nan ...
xfields (recNum) |S50 b' AO2A TSB06 $ ' b' AO1 ' ...
report_length (recNum) float64 71.0 55.0 64.0 56.0 63.0 ...
report (recNum) |S192 b'KPAM 112345Z 10013KT 10SM TS OVC023 27/23 A3007 RMK AO2A TSB06 SLP186 $' ...
Attributes:
title: METAR Data from NWS
version: 2.3
processor: metar2nc version v1.2
Conventions: Unidata Observation Dataset v1.0
standard_name_vocabulary: CF-1.0
description: Metar Data from NWS distributed through the Un...
time_coordinate: time_observation
cdm_datatype: Station
stationDimension: station
station_id: station_id
station_description: station_description
latitude_coordinate: latitude
longitude_coordinate: longitude
altitude_coordinate: altitude
geospatial_lat_max: 90.0
geospatial_lat_min: -90.0
geospatial_lon_max: 360.0
geospatial_lon_min: 0.0
time_coverage_start: 1499816700 seconds since 1970-01-01 00 UTC
time_coverage_end: 1499902080 seconds since 1970-01-01 00 UTC
observationDimension: recNum
notes: \n The metar2nc decoder creates a netCDF fi...
In [ ]:
Content source: vyan2000/ocml-public
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