Note: This notebook is based on one from Thomas Robitaille
Important Note:
Run the executables python3 and ipython3 to launch the Python or IPython shells. Do not use python or ipython. On most systems they are linked to Python 2 versions!
To run Python code interactively, one can use the standard Python prompt, which can be launched by typing python3 in your standard shell:
$ python3
Python 3.6.1 |Anaconda custom (64-bit)| (default, Mar 22 2017, 19:54:23)
[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] on linux
Type "help", "copyright", "credits" or "license" for more information.
The >>> indicates that Python is ready to accept commands. If you type a = 1 then press enter, this will assign the value 1 to a. If you then type a you will see the value of a (this is equivalent to print a):
>>> a = 1
>>> a
1
The Python shell can execute any Python code, even multi-line statements, though it is often more convenient to use Python non-interactively for such cases.
The default Python shell is very limited, and in practice, you will want instead to use the IPython (or interactive Python) shell. This is an add-on package that adds many features to the default Python shell, including the ability to edit and navigate the history of previous commands, as well as the ability to tab-complete variable and function names. To start up IPython, type:
$ ipython3
Python 3.6.1 |Anaconda custom (64-bit)| (default, Mar 22 2017, 19:54:23)
Type "copyright", "credits" or "license" for more information.
IPython 5.1.0 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object', use 'object??' for extra details.
In [1]:
The >>> symbols are now replaced by In [x], and output, when present, is prepended with Out [x]. If we now type the same commands as before, we get:
In [1]: a = 1
In [2]: a
Out[2]: 1
If you now type the up arrow twice, you will get back to a = 1.
Note: The ipython3-interpreter is a console version of the jupyter notebooks that we are using in class.
While the interactive Python mode is very useful to exploring and trying out code, you will eventually want to write a script to record and reproduce what you did, or to do things that are too complex to type in interactively (defining functions, classes, etc.). To write a Python script, just use your favorite code editor to put the code in a file with a .py extension. For example, we can create a file called test.py containing:
a = 1
print(a)
On the CIP pool machines you can use for example the emacs editor which you can open by typing:
emacs &
We can then run the script on the command-line with:
$ python3 test.py
1
Note: The print statement is necessary, because typing a on its own will only print out the value in interactive mode. In scripts, the printing has to be explicitly requested with the print command. To print multiple variables, just separate them with a comma after the print command:
print(a, 1.5, "spam")Note: There are very good integrated development environments around for Python. Many people told me that spyder is extremely good but I never used it. It is certainly worth to check it out on your own! It is part of the Anaconda distribution and also installed in the CIP-Pool and on the AIfA machines.
It can sometimes be useful to run a script to set things up, and to continue in interactive mode. This can be done using the %run IPython command to run the script, which then gets executed. The IPython session then has access to the last state of the variables from the script:
$ ipython3
Python 3.6.1 |Anaconda custom (64-bit)| (default, Mar 22 2017, 19:54:23)
Type "copyright", "credits" or "license" for more information.
IPython 5.1.0 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object', use 'object??' for extra details.
In [1]: %run test.py
1
In [2]: a + 1
Out[2]: 2
In [ ]: