notebook.community

Edit and run 





In [4]:



    


from gingivere.settings import load_settings

settings = load_settings(path="../SETTINGS.json")

targets = [
    'Dog_1',
    'Dog_2',
    'Dog_3',
    'Dog_4',
    'Dog_5',
    'Patient_1',
    'Patient_2'
]

Test Settings





In [5]:



    


from gingivere import SETTINGS

SETTINGS.data_dir



    


















    
Out[5]:








'D:/gingivere'

Source Data





In [6]:



    


from gingivere.transformers import source, source_mem
from gingivere.data import generate_mat_paths

g = generate_mat_paths("Dog_1")
path = next(g)



    











In [7]:



    


%%timeit
source(path)



    


















    






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100 loops, best of 3: 6.63 ms per loop

















In [8]:



    


%%timeit
source_mem(path)



    


















    






WARNING:root:[MemorizedFunc(func=<function source_mem at 0x000000000A000620>, cachedir='C:/Users/Benjamin/Projects/gingivere/data-cache\\joblib')]: Clearing cache C:/Users/Benjamin/Projects/gingivere/data-cache\joblib\gingivere\transformers\source_mem










    






________________________________________________________________________________
[Memory] Calling gingivere.transformers.source_mem...
source_mem('D:/gingivere/Dog_1/Dog_1_interictal_segment_0001.mat')
_______________________________________________________source_mem - 0.0s, 0.0min
1000 loops, best of 3: 1.3 ms per loop

Masks





In [6]:



    


from gingivere.data import generate_mat_cvs, generate_mat_tests

paths = generate_mat_cvs("Dog_1")
[path for path in paths]



    


















    
Out[6]:








['D:/gingivere/Dog_1/Dog_1_interictal_segment_0001.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0002.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0003.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0004.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0005.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0006.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0007.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0008.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0009.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0010.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0011.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0012.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0013.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0014.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0015.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0016.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0017.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0018.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0019.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0020.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0021.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0022.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0023.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0024.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0025.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0026.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0027.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0028.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0029.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0030.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0031.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0032.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0033.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0034.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0035.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0036.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0037.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0038.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0039.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0040.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0041.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0042.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0043.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0044.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0045.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0046.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0047.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0048.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0049.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0050.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0051.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0052.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0053.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0054.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0055.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0056.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0057.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0058.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0059.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0060.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0061.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0062.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0063.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0064.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0065.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0066.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0067.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0068.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0069.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0070.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0071.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0072.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0073.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0074.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0075.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0076.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0077.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0078.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0079.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0080.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0081.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0082.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0083.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0084.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0085.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0086.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0087.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0088.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0089.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0090.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0091.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0092.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0093.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0094.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0095.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0096.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0097.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0098.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0099.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0100.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0101.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0102.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0103.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0104.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0105.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0106.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0107.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0108.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0109.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0110.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0111.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0112.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0113.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0114.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0115.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0116.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0117.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0118.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0119.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0120.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0121.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0122.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0123.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0124.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0125.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0126.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0127.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0128.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0129.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0130.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0131.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0132.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0133.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0134.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0135.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0136.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0137.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0138.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0139.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0140.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0141.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0142.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0143.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0144.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0145.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0146.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0147.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0148.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0149.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0150.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0151.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0152.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0153.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0154.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0155.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0156.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0157.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0158.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0159.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0160.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0161.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0162.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0163.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0164.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0165.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0166.mat',
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 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0459.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0460.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0461.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0462.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0463.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0464.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0465.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0466.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0467.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0468.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0469.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0470.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0471.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0472.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0473.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0474.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0475.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0476.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0477.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0478.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0479.mat',
 'D:/gingivere/Dog_1/Dog_1_interictal_segment_0480.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0001.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0002.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0003.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0004.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0005.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0006.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0007.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0008.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0009.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0010.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0011.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0012.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0013.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0014.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0015.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0016.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0017.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0018.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0019.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0020.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0021.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0022.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0023.mat',
 'D:/gingivere/Dog_1/Dog_1_preictal_segment_0024.mat']

















In [7]:



    


paths = generate_mat_tests("Dog_1")
[path for path in paths]



    


















    
Out[7]:








['D:/gingivere/Dog_1/Dog_1_test_segment_0001.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0002.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0003.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0004.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0005.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0006.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0007.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0008.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0009.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0010.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0011.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0012.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0013.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0014.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0015.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0016.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0017.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0018.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0019.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0020.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0021.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0022.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0023.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0024.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0025.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0026.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0027.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0028.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0029.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0030.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0031.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0032.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0033.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0034.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0035.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0036.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0037.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0038.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0039.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0040.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0041.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0042.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0043.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0044.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0045.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0046.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0047.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0048.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0049.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0050.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0051.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0052.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0053.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0054.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0055.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0056.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0057.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0058.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0059.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0060.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0061.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0062.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0063.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0064.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0065.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0066.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0067.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0068.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0069.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0070.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0071.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0072.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0073.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0074.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0075.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0076.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0077.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0078.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0079.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0080.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0081.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0082.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0083.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0084.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0085.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0086.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0087.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0088.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0089.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0090.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0091.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0092.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0093.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0094.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0095.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0096.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0097.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0098.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0099.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0100.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0101.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0102.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0103.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0104.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0105.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0106.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0107.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0108.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0109.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0110.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0111.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0112.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0113.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0114.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0115.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0116.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0117.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0118.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0119.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0120.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0121.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0122.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0123.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0124.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0125.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0126.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0127.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0128.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0129.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0130.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0131.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0132.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0133.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0134.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0135.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0136.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0137.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0138.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0139.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0140.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0141.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0142.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0143.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0144.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0145.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0146.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0147.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0148.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0149.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0150.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0151.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0152.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0153.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0154.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0155.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0156.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0157.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0158.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0159.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0160.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0161.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0162.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0163.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0164.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0165.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0166.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0167.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0168.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0169.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0170.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0171.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0172.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0173.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0174.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0175.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0176.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0177.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0178.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0179.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0180.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0181.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0182.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0183.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0184.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0185.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0186.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0187.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0188.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0189.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0190.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0191.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0192.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0193.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0194.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0195.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0196.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0197.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0198.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0199.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0200.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0201.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0202.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0203.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0204.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0205.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0206.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0207.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0208.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0209.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0210.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0211.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0212.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0213.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0214.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0215.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0216.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0217.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0218.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0219.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0220.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0221.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0222.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0223.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0224.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0225.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0226.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0227.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0228.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0229.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0230.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0231.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0232.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0233.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0234.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0235.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0236.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0237.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0238.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0239.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0240.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0241.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0242.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0243.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0244.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0245.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0246.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0247.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0248.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0249.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0250.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0251.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0252.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0253.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0254.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0255.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0256.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0257.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0258.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0259.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0260.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0261.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0262.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0263.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0264.mat',
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 'D:/gingivere/Dog_1/Dog_1_test_segment_0499.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0500.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0501.mat',
 'D:/gingivere/Dog_1/Dog_1_test_segment_0502.mat']

Windower





In [ ]:



    


from gingivere.transformers import source, window
from gingivere.data import generate_mat_paths

g = generate_mat_paths("Dog_1")
path = next(g)
data = source(path)



    











In [ ]:



    


window(data)

Preprocess





In [4]:



    


from gingivere.transformers import source, preprocess
from gingivere.data import generate_mat_paths

g = generate_mat_paths("Dog_1")
path = next(g)
data = source(path)



    


















    






Loading: D:/gingivere/Dog_1/Dog_1_interictal_segment_0001.mat

















In [5]:



    


preprocess(data)



    


















    
Out[5]:








array([[ 0.03023231,  0.7175101 ,  0.98451281, ..., -1.00958347,
        -0.92963028, -0.60840571],
       [-0.93720174, -0.21628295,  0.73146534, ..., -1.57922256,
        -1.41949534, -1.10059905],
       [-1.53254569, -1.91908205, -1.16639066, ..., -0.64338696,
        -0.70696431, -0.93653464],
       ..., 
       [ 1.70463741,  1.65130317,  1.61713147, ...,  1.75723469,
         1.25249588,  0.97755075],
       [ 0.58836734,  0.4428651 , -0.34398639, ...,  0.57726812,
         0.58449805,  0.37598106],
       [-0.63952971, -1.09514701, -1.16639066, ...,  0.37382561,
         0.40636533,  0.2119166 ]], dtype=float32)

Quantize





In [1]:



    


from gingivere.transformers import source, quantize
from gingivere.data import generate_mat_paths

g = generate_mat_paths("Dog_1")
path = next(g)
data = source(path)



    


















    






Loading: D:/gingivere/Dog_1/Dog_1_interictal_segment_0001.mat

















In [2]:



    


x = quantize(data)



    











In [3]:



    


x



    


















    
Out[3]:








array([[  2.41333214e-06,   1.09528155e-05,   1.05320294e-04,
          1.92979944e-03,   1.10244732e-02,   1.65734044e-03,
          9.37486766e-05,   1.18191401e-05,   7.42563770e-07,
          1.85640943e-07],
       [  3.73792113e-06,   2.72474790e-05,   2.07651363e-04,
          1.82164635e-03,   1.08011169e-02,   9.36565641e-03,
          1.20311882e-03,   1.37712879e-04,   1.58369821e-05,
          1.18039623e-06],
       [  8.21819356e-07,   4.00636918e-06,   3.00991323e-05,
          4.56828828e-04,   8.61759763e-03,   1.42834252e-02,
          1.19400083e-03,   4.00636927e-05,   2.46545801e-06,
          1.23272901e-06],
       [  3.78297784e-07,   1.32404227e-06,   2.03335057e-05,
          3.56829376e-04,   7.62714539e-03,   1.34191681e-02,
          1.19296205e-03,   5.34345636e-05,   3.59382898e-06,
          5.67446705e-07],
       [  4.65697622e-06,   8.91673990e-05,   2.59147026e-04,
          9.83786187e-04,   3.26707424e-03,   5.97243523e-03,
          4.58403956e-03,   1.17485924e-03,   8.05382952e-05,
          4.65697622e-06],
       [  5.80882045e-07,   1.97499890e-06,   6.35484976e-05,
          2.38707662e-03,   2.02361885e-02,   4.99291345e-03,
          1.63808741e-04,   7.89999558e-06,   6.97058454e-07,
          4.64705636e-07],
       [  2.07499156e-07,   7.26247038e-07,   2.80123868e-06,
          6.22497464e-06,   2.61448949e-05,   1.04994571e-03,
          1.89424939e-02,   4.78908047e-03,   5.62322712e-05,
          1.76374283e-06],
       [  2.50118916e-07,   4.97736655e-05,   1.27381189e-02,
          2.19054148e-03,   9.31693012e-06,   2.56371891e-06,
          1.31312436e-06,   3.75178388e-07,   1.25059458e-07,
          1.25059458e-07],
       [  1.24234600e-06,   1.20685045e-05,   9.43295599e-05,
          1.80530630e-03,   1.38492296e-02,   5.17472625e-03,
          3.15467158e-04,   2.20072725e-05,   1.68604106e-06,
          5.32434001e-07],
       [  3.20005086e-07,   3.20005086e-07,   1.17335208e-06,
          2.03736581e-05,   2.83951202e-04,   7.45206559e-03,
          1.64665021e-02,   1.29975402e-03,   4.94941232e-05,
          1.49335710e-06],
       [  6.28122450e-07,   3.76873487e-07,   2.13561634e-06,
          2.38686534e-05,   5.02246723e-04,   1.17399860e-02,
          1.67296641e-02,   1.09067187e-03,   2.98986288e-05,
          1.00499597e-06],
       [  3.13588953e-06,   3.19860737e-05,   3.21899075e-04,
          3.74472258e-03,   1.88153367e-02,   1.31130358e-02,
          1.46571477e-03,   8.92160606e-05,   8.31010766e-06,
          6.27177940e-07],
       [  1.98922095e-07,   1.19353251e-06,   2.12183568e-06,
          4.50890047e-06,   2.95730842e-05,   6.91042095e-03,
          8.91290326e-03,   3.38830614e-05,   2.98383134e-06,
          4.64151555e-07],
       [  5.11746407e-07,   6.39682980e-07,   9.33937190e-06,
          2.71225581e-04,   6.82055578e-03,   2.01537237e-02,
          3.31112719e-03,   1.02733087e-04,   4.60571755e-06,
          3.83809805e-07],
       [  9.50053121e-08,   2.85015943e-07,   5.70031887e-07,
          2.28012755e-06,   4.50325169e-05,   3.49429529e-03,
          1.83341242e-02,   8.94855009e-04,   7.03039314e-06,
          4.75026553e-07],
       [  3.31010568e-07,   4.41347424e-07,   2.97909514e-06,
          3.44250984e-05,   6.95453200e-04,   1.10305957e-02,
          1.37203876e-02,   9.31243063e-04,   3.79558769e-05,
          1.21370545e-06]], dtype=float32)

















In [ ]:



    


x = [  2.41333214e-06,   1.09528155e-05,   1.05320294e-04,
          1.92979944e-03,   1.10244732e-02,   1.65734044e-03,
          9.37486766e-05,   1.18191401e-05,   7.42563770e-07,
          1.85640943e-07]



    











In [ ]:



    


x

Content source: schae234/gingivere

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