In [1]:
%load_ext autoreload
%autoreload 2
In [2]:
import sys
sys.path.append('../')
from similarity import _cleanup, _normalize, similarity2
from sherlok import Sherlok
neuroner = Sherlok('neuroner')
In [3]:
# PARSE OBO
import oboparser, re
hbp_obo_file = 'hbp_cell_ontology.obo'
nlex_obo_file = 'neurolex.obo'
# a simple function to pull out the cell names
SYNONOYM_NAME = re.compile(r'"(.*?)"').search
def get_cell_names(obo_onto_file):
cell_names = {}
for stanza in oboparser.parse(obo_onto_file):
if stanza['@type'] != "Term": continue
id = stanza["id"]
if id == '': continue
name = stanza["name"]
synonyms = []
for s in stanza["synonym"]:
synonyms.append(SYNONOYM_NAME(s).group(1))
cell_names[id] = (name, synonyms)
return cell_names
hbp_cell_names = get_cell_names(hbp_obo_file)
nlex_cell_names = get_cell_names(nlex_obo_file)
print 'hbp_cell_names', len(hbp_cell_names)
print 'nlex_cell_names', len(nlex_cell_names)
assert hbp_cell_names['HBP_CELL:0000016'][0] == 'neuron expressing Parvalbumin'
assert hbp_cell_names['HBP_CELL:0000016'][1][1] == 'Pvalb+ cell'
hbp_cell_names 133
nlex_cell_names 750
In [ ]:
In [4]:
# PREPROCESS NEUROLEX and HBP
def preprocess(cell_names, prefix=''):
cell_names_processed = {}
for id, entity in cell_names.items():
name, synonyms = entity
print('name::', name, "id:", id, "prefix:", prefix)
variants = []
variants.append(_cleanup(neuroner.annotate(prefix + name).annotations)) # name
for s in synonyms:
print(' syn::', s)
variants.append(_cleanup(neuroner.annotate(prefix + s).annotations)) # synonyms
cell_names_processed[id] = variants
return cell_names_processed
hbp_cell_names_processed = preprocess(hbp_cell_names, prefix='neocortex ')
nlex_cell_names_processed = preprocess(nlex_cell_names)
print('done :-)')
('name::', 'Axonal Cell', 'id:', 'HBP_CELL:0000065', 'prefix:', 'neocortex ')
('name::', 'Nest Basket Cell', 'id:', 'HBP_CELL:0000064', 'prefix:', 'neocortex ')
(' syn::', 'arcade cell')
(' syn::', 'willow cell')
(' syn::', 'NBC')
('name::', 'Large Axon Cell', 'id:', 'HBP_CELL:0000067', 'prefix:', 'neocortex ')
(' syn::', 'LAC')
('name::', 'Descending Axon Cell', 'id:', 'HBP_CELL:0000066', 'prefix:', 'neocortex ')
(' syn::', 'DAC')
('name::', 'Cajal-Retzius cell like cell', 'id:', 'HBP_CELL:0000061', 'prefix:', 'neocortex ')
(' syn::', 'CrC')
('name::', 'Chandelier Cell', 'id:', 'HBP_CELL:0000060', 'prefix:', 'neocortex ')
(' syn::', 'Axo-axonic cell')
(' syn::', 'ChC')
('name::', 'Large Basket Cell', 'id:', 'HBP_CELL:0000063', 'prefix:', 'neocortex ')
(' syn::', 'LBC')
('name::', 'Small Basket Cell', 'id:', 'HBP_CELL:0000062', 'prefix:', 'neocortex ')
(' syn::', 'SBC')
('name::', 'Layer V Neurogliaform Cell', 'id:', 'HBP_CELL:0000115', 'prefix:', 'neocortex ')
(' syn::', 'L5_NGC')
('name::', 'Layer IV Neurogliaform Cell', 'id:', 'HBP_CELL:0000114', 'prefix:', 'neocortex ')
(' syn::', 'L4_NGC')
('name::', 'Layer II/III Martinotti Cell', 'id:', 'HBP_CELL:0000117', 'prefix:', 'neocortex ')
(' syn::', 'L23_MC')
(' syn::', 'L2/3_MC')
('name::', 'Layer VI Neurogliaform Cell', 'id:', 'HBP_CELL:0000116', 'prefix:', 'neocortex ')
(' syn::', 'L6_NGC')
('name::', 'Small Axon Cell', 'id:', 'HBP_CELL:0000069', 'prefix:', 'neocortex ')
(' syn::', 'SAC')
(' syn::', 'SLAC')
('name::', 'Horizontal Axon Cell', 'id:', 'HBP_CELL:0000068', 'prefix:', 'neocortex ')
(' syn::', 'HAC')
('name::', 'Layer II/III Neurogliaform Cell', 'id:', 'HBP_CELL:0000113', 'prefix:', 'neocortex ')
(' syn::', 'L23_NGC')
(' syn::', 'L2/3_NGC')
('name::', 'Layer VI Double Bouquet Cell', 'id:', 'HBP_CELL:0000112', 'prefix:', 'neocortex ')
(' syn::', 'L6_DBC')
('name::', 'Layer V Martinotti Cell', 'id:', 'HBP_CELL:0000119', 'prefix:', 'neocortex ')
(' syn::', 'L5_MC')
('name::', 'Layer IV Martinotti Cell', 'id:', 'HBP_CELL:0000118', 'prefix:', 'neocortex ')
(' syn::', 'L4_MC')
('name::', 'Layer IV Bipolar Cell', 'id:', 'HBP_CELL:0000098', 'prefix:', 'neocortex ')
(' syn::', 'L4_BP')
('name::', 'Layer V Bipolar Cell', 'id:', 'HBP_CELL:0000099', 'prefix:', 'neocortex ')
(' syn::', 'L5_BP')
('name::', 'Layer I Neurogliaform Cell with Dense Axonal Arbour', 'id:', 'HBP_CELL:0000091', 'prefix:', 'neocortex ')
(' syn::', 'L1_NGC-DA')
('name::', 'Layer I Neurogliaform Cell with Sparse Axon Arbour', 'id:', 'HBP_CELL:0000092', 'prefix:', 'neocortex ')
(' syn::', 'L1_NGC-SA')
('name::', 'Layer I Descending Axon Cell', 'id:', 'HBP_CELL:0000093', 'prefix:', 'neocortex ')
(' syn::', 'L1_DAC')
('name::', 'Layer I Horizontal Axon Cell', 'id:', 'HBP_CELL:0000094', 'prefix:', 'neocortex ')
(' syn::', 'L1_HAC')
('name::', 'Layer I Large Axon Cell', 'id:', 'HBP_CELL:0000095', 'prefix:', 'neocortex ')
(' syn::', 'L1_LAC')
('name::', 'Layer I Small Axon Cell', 'id:', 'HBP_CELL:0000096', 'prefix:', 'neocortex ')
(' syn::', 'L1_SAC')
('name::', 'Layer II/III Bipolar Cell', 'id:', 'HBP_CELL:0000097', 'prefix:', 'neocortex ')
(' syn::', 'L23_BP')
(' syn::', 'L2/3_BP')
('name::', 'neuron classified based on gene expression', 'id:', 'HBP_CELL:0000010', 'prefix:', 'neocortex ')
('name::', 'neuron expressing Neuropeptide Y', 'id:', 'HBP_CELL:0000011', 'prefix:', 'neocortex ')
(' syn::', 'NPY+ cell')
('name::', 'neuron expressing Vasoactive Intestinal Peptide', 'id:', 'HBP_CELL:0000012', 'prefix:', 'neocortex ')
(' syn::', 'VIP+ cell')
('name::', 'neuron expressing Cholecystokinin', 'id:', 'HBP_CELL:0000013', 'prefix:', 'neocortex ')
(' syn::', 'CCK+ cell')
('name::', 'neuron expressing Calbindin', 'id:', 'HBP_CELL:0000014', 'prefix:', 'neocortex ')
(' syn::', 'calbindin 1 expressing cell')
(' syn::', 'CB+ cell')
('name::', 'neuron expressing Somatostatin', 'id:', 'HBP_CELL:0000015', 'prefix:', 'neocortex ')
(' syn::', 'SOM+ cell')
(' syn::', 'Sst+ cell')
('name::', 'neuron expressing Parvalbumin', 'id:', 'HBP_CELL:0000016', 'prefix:', 'neocortex ')
(' syn::', 'PV+ cell')
(' syn::', 'Pvalb+ cell')
('name::', 'neuron expressing Calretinin', 'id:', 'HBP_CELL:0000017', 'prefix:', 'neocortex ')
(' syn::', 'Calb2+ cell')
(' syn::', 'CR+ cell')
('name::', 'pyramidal cell', 'id:', 'HBP_CELL:0000018', 'prefix:', 'neocortex ')
(' syn::', 'PC')
('name::', 'Inhibitory neuron', 'id:', 'HBP_CELL:0000019', 'prefix:', 'neocortex ')
('name::', 'Delayed Accomodating Cell', 'id:', 'HBP_CELL:0000089', 'prefix:', 'neocortex ')
(' syn::', 'dAC')
('name::', 'Delayed Non-Accomodating Cell', 'id:', 'HBP_CELL:0000088', 'prefix:', 'neocortex ')
(' syn::', 'dNAC')
('name::', 'Burst Stuttering Cell', 'id:', 'HBP_CELL:0000083', 'prefix:', 'neocortex ')
(' syn::', 'bSTUT')
('name::', 'Classical Accomodating Cell', 'id:', 'HBP_CELL:0000082', 'prefix:', 'neocortex ')
(' syn::', 'cAC')
('name::', 'Classical Non-Accomodating Cell', 'id:', 'HBP_CELL:0000081', 'prefix:', 'neocortex ')
(' syn::', 'cNAC')
('name::', 'Classical Irregular Cell', 'id:', 'HBP_CELL:0000080', 'prefix:', 'neocortex ')
(' syn::', 'cIR')
('name::', 'Delayed Stuttering Cell', 'id:', 'HBP_CELL:0000087', 'prefix:', 'neocortex ')
(' syn::', 'dSTUT')
('name::', 'Burst Accomodating Cell', 'id:', 'HBP_CELL:0000086', 'prefix:', 'neocortex ')
(' syn::', 'bAC')
('name::', 'Burst Irregular Cell', 'id:', 'HBP_CELL:0000085', 'prefix:', 'neocortex ')
(' syn::', 'bIR')
('name::', 'Burst Non-Accomodating Cell', 'id:', 'HBP_CELL:0000084', 'prefix:', 'neocortex ')
(' syn::', 'bNAC')
('name::', 'Layer II/III Double Bouquet Cell', 'id:', 'HBP_CELL:0000109', 'prefix:', 'neocortex ')
(' syn::', 'L23_DBC')
(' syn::', 'L2/3_DBC')
('name::', 'neuron classified base morphological properties', 'id:', 'HBP_CELL:0000003', 'prefix:', 'neocortex ')
('name::', 'glial cell', 'id:', 'HBP_CELL:0000002', 'prefix:', 'neocortex ')
('name::', 'neuron', 'id:', 'HBP_CELL:0000001', 'prefix:', 'neocortex ')
('name::', 'cell', 'id:', 'HBP_CELL:0000000', 'prefix:', 'neocortex ')
('name::', 'neuron classified based on neurotransmitter release', 'id:', 'HBP_CELL:0000007', 'prefix:', 'neocortex ')
('name::', 'neuron classified based on connection properties', 'id:', 'HBP_CELL:0000006', 'prefix:', 'neocortex ')
('name::', 'neuron classified based on molecular expression', 'id:', 'HBP_CELL:0000005', 'prefix:', 'neocortex ')
('name::', 'neuron classified base electrical properties', 'id:', 'HBP_CELL:0000004', 'prefix:', 'neocortex ')
('name::', 'neuron classified based on protein expression', 'id:', 'HBP_CELL:0000009', 'prefix:', 'neocortex ')
('name::', 'neuron classified based on synaptic properties', 'id:', 'HBP_CELL:0000008', 'prefix:', 'neocortex ')
('name::', 'Layer VI Bipolar Cell', 'id:', 'HBP_CELL:0000100', 'prefix:', 'neocortex ')
(' syn::', 'L6_BP')
('name::', 'Layer II/III Bitufted Cell', 'id:', 'HBP_CELL:0000101', 'prefix:', 'neocortex ')
(' syn::', 'L23_BTC')
(' syn::', 'L2/3_BTC')
('name::', 'Tufted Pyramidal Cell towards Layer I', 'id:', 'HBP_CELL:0000036', 'prefix:', 'neocortex ')
(' syn::', 'TPC_L1')
('name::', 'Thick Tufted Pyramidal Cell', 'id:', 'HBP_CELL:0000037', 'prefix:', 'neocortex ')
(' syn::', 'TTPC')
('name::', 'neuron classified base on regional projection', 'id:', 'HBP_CELL:0000034', 'prefix:', 'neocortex ')
('name::', 'Tufted Pyramidal Cell towards Layer IV', 'id:', 'HBP_CELL:0000035', 'prefix:', 'neocortex ')
(' syn::', 'TPC_L4')
('name::', 'Narrow Pyramidal Cell projecting to thalamus', 'id:', 'HBP_CELL:0000032', 'prefix:', 'neocortex ')
(' syn::', 'NPC')
('name::', 'neuron classified based on location', 'id:', 'HBP_CELL:0000033', 'prefix:', 'neocortex ')
('name::', 'Horizontal Pyramidal Cell', 'id:', 'HBP_CELL:0000030', 'prefix:', 'neocortex ')
(' syn::', 'HPC')
('name::', 'Bipolar Pyramidal Cell', 'id:', 'HBP_CELL:0000031', 'prefix:', 'neocortex ')
(' syn::', 'BPC')
('name::', 'Slender Tufted Pyramidal Cell', 'id:', 'HBP_CELL:0000038', 'prefix:', 'neocortex ')
(' syn::', 'STPC')
('name::', 'Early bifurcating Thick Tufted Pyramidal Cell', 'id:', 'HBP_CELL:0000039', 'prefix:', 'neocortex ')
(' syn::', 'TTPC2')
('name::', 'Layer VI Pyramidal Cell', 'id:', 'HBP_CELL:0000029', 'prefix:', 'neocortex ')
(' syn::', 'L4_PC')
('name::', 'Layer II/III Pyramidal Cell', 'id:', 'HBP_CELL:0000028', 'prefix:', 'neocortex ')
(' syn::', 'L23_PC')
(' syn::', 'L2/3_PC')
('name::', 'Glutamatergic neuron', 'id:', 'HBP_CELL:0000021', 'prefix:', 'neocortex ')
('name::', 'Excitatory neuron', 'id:', 'HBP_CELL:0000020', 'prefix:', 'neocortex ')
('name::', 'tufted pyramidal cell', 'id:', 'HBP_CELL:0000023', 'prefix:', 'neocortex ')
(' syn::', 'TPC')
('name::', 'GABAergic neuron', 'id:', 'HBP_CELL:0000022', 'prefix:', 'neocortex ')
('name::', 'Spiny Stellate Cell', 'id:', 'HBP_CELL:0000025', 'prefix:', 'neocortex ')
(' syn::', 'SS')
(' syn::', 'SSC')
('name::', 'Untufted Pyramidal Cell', 'id:', 'HBP_CELL:0000024', 'prefix:', 'neocortex ')
(' syn::', 'UTPC')
('name::', 'Star Pyramidal Cell', 'id:', 'HBP_CELL:0000027', 'prefix:', 'neocortex ')
(' syn::', 'SPC')
(' syn::', 'SP')
('name::', 'Layer 4 Spiny Stellate Cell', 'id:', 'HBP_CELL:0000026', 'prefix:', 'neocortex ')
(' syn::', 'L4_SS')
('name::', 'Layer VI Large Basket Cell', 'id:', 'HBP_CELL:0000124', 'prefix:', 'neocortex ')
(' syn::', 'L6_LBC')
('name::', 'Layer II/III Nest Basket Cell', 'id:', 'HBP_CELL:0000125', 'prefix:', 'neocortex ')
(' syn::', 'L23_NBC')
(' syn::', 'L2/3_NBC')
('name::', 'Layer II/III Small Basket Cell', 'id:', 'HBP_CELL:0000126', 'prefix:', 'neocortex ')
(' syn::', 'L23_SBC')
(' syn::', 'L2/3_SBC')
('name::', 'Layer IV Small Basket Cell', 'id:', 'HBP_CELL:0000127', 'prefix:', 'neocortex ')
(' syn::', 'L4_SBC')
('name::', 'Layer VI Martinotti Cell', 'id:', 'HBP_CELL:0000120', 'prefix:', 'neocortex ')
(' syn::', 'L6_MC')
('name::', 'Layer II/III Large Basket Cell', 'id:', 'HBP_CELL:0000121', 'prefix:', 'neocortex ')
(' syn::', 'L23_LBC')
(' syn::', 'L2/3_LBC')
('name::', 'Layer IV Large Basket Cell', 'id:', 'HBP_CELL:0000122', 'prefix:', 'neocortex ')
(' syn::', 'L4_LBC')
('name::', 'Layer V Large Basket Cell', 'id:', 'HBP_CELL:0000123', 'prefix:', 'neocortex ')
(' syn::', 'L5_LBC')
('name::', 'Layer V Small Basket Cell', 'id:', 'HBP_CELL:0000128', 'prefix:', 'neocortex ')
(' syn::', 'L5_SBC')
('name::', 'Layer VI Small Basket Cell', 'id:', 'HBP_CELL:0000129', 'prefix:', 'neocortex ')
(' syn::', 'L6_SBC')
('name::', 'Neurogliaform Cell with Dense Axonal Arbours', 'id:', 'HBP_CELL:0000058', 'prefix:', 'neocortex ')
(' syn::', 'NGC-DA')
('name::', 'Double Bouquet Cell', 'id:', 'HBP_CELL:0000059', 'prefix:', 'neocortex ')
(' syn::', 'DBC')
('name::', 'Bitufted Cell', 'id:', 'HBP_CELL:0000054', 'prefix:', 'neocortex ')
(' syn::', 'BTC')
('name::', 'Martinotti Cell', 'id:', 'HBP_CELL:0000055', 'prefix:', 'neocortex ')
(' syn::', 'MC')
('name::', 'Neurogliaform Cell', 'id:', 'HBP_CELL:0000056', 'prefix:', 'neocortex ')
(' syn::', 'NGC')
('name::', 'Neurogliaform Cell with Sparse Axonal Arbours', 'id:', 'HBP_CELL:0000057', 'prefix:', 'neocortex ')
(' syn::', 'NGC-SA')
('name::', 'Layer V Slender Tufted Pyramidal Cell', 'id:', 'HBP_CELL:0000050', 'prefix:', 'neocortex ')
(' syn::', 'L5_STPC')
('name::', 'Layer VI Tufted Pyramidal Cell towards Layer I', 'id:', 'HBP_CELL:0000051', 'prefix:', 'neocortex ')
(' syn::', 'L6_TPC_L1')
('name::', 'Basket Cell', 'id:', 'HBP_CELL:0000052', 'prefix:', 'neocortex ')
(' syn::', 'BC')
('name::', 'Bipolar Cell', 'id:', 'HBP_CELL:0000053', 'prefix:', 'neocortex ')
(' syn::', 'BP')
('name::', 'GABAergic interneuron', 'id:', 'HBP_CELL:0000133', 'prefix:', 'neocortex ')
('name::', 'Layer VI Nest Basket Cell', 'id:', 'HBP_CELL:0000132', 'prefix:', 'neocortex ')
(' syn::', 'L6_NBC')
('name::', 'Layer V Nest Basket Cell', 'id:', 'HBP_CELL:0000131', 'prefix:', 'neocortex ')
(' syn::', 'L5_NBC')
('name::', 'Layer IV Nest Basket Cell', 'id:', 'HBP_CELL:0000130', 'prefix:', 'neocortex ')
(' syn::', 'L4_NBC')
('name::', 'Layer VI Chandelier Cell', 'id:', 'HBP_CELL:0000108', 'prefix:', 'neocortex ')
(' syn::', 'L6_ChC')
('name::', 'Layer V Double Bouquet Cell', 'id:', 'HBP_CELL:0000111', 'prefix:', 'neocortex ')
(' syn::', 'L5_DBC')
('name::', 'Layer V Untufted Pyramidal Cell', 'id:', 'HBP_CELL:0000049', 'prefix:', 'neocortex ')
(' syn::', 'L5_UTPC')
('name::', 'Layer V Early bifurcating Thick Tufted Pyramidal Cell', 'id:', 'HBP_CELL:0000048', 'prefix:', 'neocortex ')
(' syn::', 'L5_TTPC2')
('name::', 'Layer VI Bipolar Pyramidal Cell', 'id:', 'HBP_CELL:0000047', 'prefix:', 'neocortex ')
(' syn::', 'L6_BPC')
('name::', 'Layer VI Inverted Pyramidal Cell', 'id:', 'HBP_CELL:0000046', 'prefix:', 'neocortex ')
(' syn::', 'L6_IPC')
('name::', 'Layer VI Untufted Pyramidal Cell', 'id:', 'HBP_CELL:0000045', 'prefix:', 'neocortex ')
(' syn::', 'L6_UTPC')
('name::', 'Layer V Late bifurcating Thick Tufted Pyramidal Cell', 'id:', 'HBP_CELL:0000044', 'prefix:', 'neocortex ')
(' syn::', 'L5_TTPC1')
('name::', 'Layer VI Tufted Pyramidal Cell towards Layer IV', 'id:', 'HBP_CELL:0000043', 'prefix:', 'neocortex ')
(' syn::', 'L6_TTPC_L4')
('name::', 'Inverted Pyramidal Cell', 'id:', 'HBP_CELL:0000042', 'prefix:', 'neocortex ')
(' syn::', 'ITPC')
(' syn::', 'IPC')
('name::', 'Untufted Slender Pyramidal Cell', 'id:', 'HBP_CELL:0000041', 'prefix:', 'neocortex ')
(' syn::', 'USPC')
('name::', 'Late bifurcating Thick Tufted Pyramidal Cell', 'id:', 'HBP_CELL:0000040', 'prefix:', 'neocortex ')
(' syn::', 'TTPC1')
('name::', 'Stuttering Cell', 'id:', 'HBP_CELL:0000072', 'prefix:', 'neocortex ')
(' syn::', 'STUT')
('name::', 'Non-Accomodating Cell', 'id:', 'HBP_CELL:0000073', 'prefix:', 'neocortex ')
(' syn::', 'NAC')
('name::', 'neuron classified based on firing behavior', 'id:', 'HBP_CELL:0000070', 'prefix:', 'neocortex ')
('name::', 'neuron classified based on spike behavior', 'id:', 'HBP_CELL:0000071', 'prefix:', 'neocortex ')
('name::', 'Classical Firing Cell', 'id:', 'HBP_CELL:0000076', 'prefix:', 'neocortex ')
('name::', 'Burst Firing Cell', 'id:', 'HBP_CELL:0000077', 'prefix:', 'neocortex ')
('name::', 'Accomodating Cell', 'id:', 'HBP_CELL:0000074', 'prefix:', 'neocortex ')
(' syn::', 'AC')
('name::', 'Irregular Spiking Cell', 'id:', 'HBP_CELL:0000075', 'prefix:', 'neocortex ')
(' syn::', 'IR')
('name::', 'Layer IV Bitufted Cell', 'id:', 'HBP_CELL:0000102', 'prefix:', 'neocortex ')
(' syn::', 'L4_BTC')
('name::', 'Layer V Bitufted Cell', 'id:', 'HBP_CELL:0000103', 'prefix:', 'neocortex ')
(' syn::', 'L5_BTC')
('name::', 'Delayed Firing Cell', 'id:', 'HBP_CELL:0000078', 'prefix:', 'neocortex ')
('name::', 'Classical Stuttering Cell', 'id:', 'HBP_CELL:0000079', 'prefix:', 'neocortex ')
(' syn::', 'cSTUT')
('name::', 'Layer IV Chandelier Cell', 'id:', 'HBP_CELL:0000106', 'prefix:', 'neocortex ')
(' syn::', 'L4_ChC')
('name::', 'Layer V Chandelier Cell', 'id:', 'HBP_CELL:0000107', 'prefix:', 'neocortex ')
(' syn::', 'L5_ChC')
('name::', 'Layer VI Bitufted Cell', 'id:', 'HBP_CELL:0000104', 'prefix:', 'neocortex ')
(' syn::', 'L6_BTC')
('name::', 'Layer II/III Chandelier Cell', 'id:', 'HBP_CELL:0000105', 'prefix:', 'neocortex ')
(' syn::', 'L23_ChC')
(' syn::', 'L2/3_ChC')
('name::', 'Layer IV Double Bouquet Cell', 'id:', 'HBP_CELL:0000110', 'prefix:', 'neocortex ')
(' syn::', 'L4_DBC')
('name::', 'Anteriolateral neurosecretory cell', 'id:', 'nlx_147720', 'prefix:', '')
('name::', 'Dorsomedial neurosecretory cell', 'id:', 'nlx_147721', 'prefix:', '')
('name::', 'Posteriolateral neurosecretory cell', 'id:', 'nlx_147722', 'prefix:', '')
('name::', 'Spinal cord ventral horn interneuron V0C', 'id:', 'nlx_cell_1006021', 'prefix:', '')
(' syn::', 'V0c interneuron')
(' syn::', 'spinal cord V0c interneuron')
('name::', 'Hypoglossal nucleus motor neuron', 'id:', 'nlx_cell_100311', 'prefix:', '')
(' syn::', 'hypoglossal motor neuron')
(' syn::', 'hypoglossal nucleus motoneuron')
(' syn::', 'hypoglossal motoneuron')
(' syn::', '12th nerve motor neuron')
(' syn::', 'XII nerve motor neuron')
('name::', 'Pb-fb-fb neuron', 'id:', 'nlx_147378', 'prefix:', '')
('name::', 'Hippocampus CA1 IS-II neuron', 'id:', 'nlx_cell_1006029', 'prefix:', '')
(' syn::', 'CA1 IS-II cell')
('name::', 'Tyraminergic neuron', 'id:', 'nlx_148704', 'prefix:', '')
('name::', 'Retina starburst amacrine cell', 'id:', 'nifext_37', 'prefix:', '')
(' syn::', 'Starburst amacrine cell')
(' syn::', 'Retina amacrine cell starburst')
('name::', 'Retina type 6 cone bipolar cell', 'id:', 'BAMSC1020', 'prefix:', '')
(' syn::', 'type 6 cone bipolar cell')
('name::', 'Retina type 7 cone bipolar cell', 'id:', 'BAMSC1021', 'prefix:', '')
(' syn::', 'type 7 cone bipolar cell')
('name::', 'Aplysia cerebral ganglion metacerebral cell', 'id:', 'nlx_cell_20090313', 'prefix:', '')
(' syn::', 'Giant Serotonergic Neuron')
(' syn::', 'Metacerebral cell')
('name::', 'U5sib neuron', 'id:', 'nlx_147928', 'prefix:', '')
('name::', 'Hippocampus CA2 pyramidal neuron', 'id:', 'nlx_cell_20090311', 'prefix:', '')
(' syn::', 'CA2 pyramidal cell')
('name::', 'U4sib neuron', 'id:', 'nlx_147926', 'prefix:', '')
('name::', 'U5 neuron', 'id:', 'nlx_147927', 'prefix:', '')
('name::', 'EH neurosecretory neuron', 'id:', 'nlx_147924', 'prefix:', '')
(' syn::', 'EH neuron')
('name::', 'Abdominal intersegmental bidendritic neuron isbp', 'id:', 'nlx_146896', 'prefix:', '')
(' syn::', 'abdominal intersegmental bidendritic neuron isbd')
('name::', 'Retina thin dendrite horizontal cell', 'id:', 'nlx_152142', 'prefix:', '')
('name::', 'Retina Retina narrow-field AII amacrine cell', 'id:', 'nlx_152143', 'prefix:', '')
('name::', 'Bipolar dendrite neuron', 'id:', 'nlx_147850', 'prefix:', '')
('name::', 'Dendritic arborizing neuron', 'id:', 'nlx_147851', 'prefix:', '')
(' syn::', 'da neuron')
('name::', 'Neocortex primary visual layer 5 callosal cell', 'id:', 'nlx_143940', 'prefix:', '')
('name::', 'Hypothalamus oxytocin neuroendocrine magnocellular cell', 'id:', 'nlx_416', 'prefix:', '')
('name::', 'Ventral midline neuron', 'id:', 'nlx_147858', 'prefix:', '')
('name::', 'DesD neuron', 'id:', 'nlx_146722', 'prefix:', '')
('name::', 'Neocortex primary motor area pyramidal layer 5 callosal cell', 'id:', 'nlx_152138', 'prefix:', '')
('name::', 'Thalamus geniculate nucleus (medial) principal neuron', 'id:', 'nlx_cell_1005001', 'prefix:', '')
('name::', 'Dorsal tegmental nucleus small cell', 'id:', 'nlx_cell_20090402', 'prefix:', '')
(' syn::', 'Dorsal tegmental nucleus small neuron')
('name::', 'Dorsal tegmental nucleus medium cell', 'id:', 'nlx_cell_20090403', 'prefix:', '')
(' syn::', 'Dorsal tegmental nucleus medium neuron')
('name::', 'Neocortex pyramidal layer 2-3 cell', 'id:', 'nifext_49', 'prefix:', '')
(' syn::', 'corticocortical cell')
(' syn::', 'superficial pyramidal cell')
(' syn::', 'Neocortex pyramidal neuron layer 2-3')
(' syn::', 'Layer 2-3 pyramidal cell')
(' syn::', 'Neocortical pyramidal neuron: superficial')
(' syn::', 'deep layer (layer 5')
(' syn::', '6) pyramidal cell')
('name::', 'Solitary tract nucleus HSD2 neuron', 'id:', 'BAMSC1112', 'prefix:', '')
(' syn::', 'HSD2 neuron')
(' syn::', 'HSD2 cell')
('name::', 'Mechanosensory neuron of adult labial sensillum 5', 'id:', 'nlx_148459', 'prefix:', '')
('name::', 'Bilateral intrinsic neuron', 'id:', 'nlx_147700', 'prefix:', '')
('name::', 'Spinocerebellar tract cell', 'id:', 'nifext_102', 'prefix:', '')
(' syn::', 'Dorsal spinocerebellar tract cell')
('name::', 'Solitary tract nucleus principal cell', 'id:', 'nifext_100', 'prefix:', '')
('name::', 'Solitary tract nucleus intrinsic cell', 'id:', 'nifext_101', 'prefix:', '')
(' syn::', 'Nucleus of the solitary tract')
('name::', 'Spinal cord ventral horn motor neuron beta', 'id:', 'nifext_106', 'prefix:', '')
(' syn::', 'Beta motor neuron')
('name::', 'Retina horizontal cell', 'id:', 'nifext_40', 'prefix:', '')
(' syn::', 'horizontal cell (retina)')
('name::', 'Amacrine neuron', 'id:', 'nlx_158403', 'prefix:', '')
(' syn::', 'amacrine cell')
('name::', 'Neocortex dorsolateral prefrontal area layer 5 calbindin cell', 'id:', 'nlx_156753', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Neocortex Dorsolateral prefrontal area layer 4 Calbindin cell', 'id:', 'nlx_156750', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Neocortex dorsolateral prefrontal area layer 6 calbindin cell', 'id:', 'nlx_156754', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Vestibular type 1 hair cell', 'id:', 'sao709770772', 'prefix:', '')
(' syn::', 'Vestibular hair cell')
('name::', 'Trigeminal nucleus motor neuron', 'id:', 'nlx_44081', 'prefix:', '')
(' syn::', 'trigeminal nucleus motor cell')
(' syn::', '5th nerve motor neuron')
(' syn::', 'Vth nerve motor neuron')
('name::', 'Thalamus ventroposterior nucleus interneuron', 'id:', 'nlx_151692', 'prefix:', '')
('name::', 'Thalamus ventroposterior nucleus principal neuron', 'id:', 'nlx_151691', 'prefix:', '')
('name::', 'Thalamus geniculate nucleus (medial) interneuron', 'id:', 'nlx_151690', 'prefix:', '')
('name::', 'Metathoracic anterior fascicle neuron', 'id:', 'nlx_146858', 'prefix:', '')
('name::', 'Ventral tegmental area dopamine neuron', 'id:', 'nlx_cell_20090305', 'prefix:', '')
(' syn::', 'Ventral tegmental area DA cell')
(' syn::', 'ventral tegmental area dopaminergic neuron')
(' syn::', 'VTA dopaminergic neuron')
('name::', 'Mechanosensory neuron of adult labial sensillum 3', 'id:', 'nlx_148457', 'prefix:', '')
('name::', 'Mechanosensory neuron of adult labial sensillum 2', 'id:', 'nlx_148456', 'prefix:', '')
('name::', 'Mechanosensory neuron of adult labial sensillum 1', 'id:', 'nlx_148455', 'prefix:', '')
('name::', 'Carbon dioxide sensitive neuron', 'id:', 'nlx_148454', 'prefix:', '')
(' syn::', 'CO2 sensitive neuron')
('name::', 'L2 GRN', 'id:', 'nlx_148453', 'prefix:', '')
('name::', 'L1 GRN', 'id:', 'nlx_148452', 'prefix:', '')
('name::', 'Larval Pdf neuron close to calyx', 'id:', 'nlx_148518', 'prefix:', '')
('name::', 'S cell', 'id:', 'nlx_148450', 'prefix:', '')
('name::', 'Larval Pdf neuron', 'id:', 'nlx_148516', 'prefix:', '')
('name::', 'Larval pacemaker neuron', 'id:', 'nlx_148514', 'prefix:', '')
('name::', 'Pupal pacemaker neuron', 'id:', 'nlx_148515', 'prefix:', '')
('name::', 'Ventral cibarial sense organ neuron of distal sensillum', 'id:', 'nlx_148512', 'prefix:', '')
('name::', 'Adult pacemaker neuron', 'id:', 'nlx_148513', 'prefix:', '')
('name::', 'Gustatory receptor neuron of the hypopharyngeal sense organ', 'id:', 'nlx_148510', 'prefix:', '')
('name::', 'Mechanosensory neuron of adult labial sensillum 4', 'id:', 'nlx_148458', 'prefix:', '')
('name::', 'DRG II cell', 'id:', 'nifext_93', 'prefix:', '')
(' syn::', 'II ganglion cell')
('name::', 'Hippocampus CA1 trilaminar neuron', 'id:', 'nlx_27085', 'prefix:', '')
(' syn::', 'CA1 trilaminar cell')
('name::', 'Retina ganglion cell B2', 'id:', 'BAMSC1048', 'prefix:', '')
(' syn::', 'retinal ganglion cell B2')
('name::', 'Tuberomammillary nucleus large histamine neuron', 'id:', 'nlx_78845', 'prefix:', '')
(' syn::', 'Tubermammillary histaminergic neuron')
('name::', "V''esA neuron", 'id:', 'nlx_146770', 'prefix:', '')
('name::', "V''esB neuron", 'id:', 'nlx_146771', 'prefix:', '')
('name::', 'Ventral multidendritic neuron', 'id:', 'nlx_146772', 'prefix:', '')
('name::', 'Sensory neuron of trichoid sensillum', 'id:', 'nlx_148060', 'prefix:', '')
('name::', 'Hippocampus CA1 IS-III neuron', 'id:', 'nlx_36222', 'prefix:', '')
(' syn::', 'CA1 IS-III cell')
('name::', 'Spinal cord proprioception intersegmental cell', 'id:', 'nifext_115', 'prefix:', '')
('name::', 'Olfactory tubercle Islets of Calleja granule neuron', 'id:', 'nlx_68936', 'prefix:', '')
(' syn::', 'Island of Calleja granule neuron')
(' syn::', 'Island of Calleja granule cell')
('name::', 'Retina photoreceptor S cone cell', 'id:', 'nlx_cell_100211', 'prefix:', '')
(' syn::', 'Retina photoreceptor cone S')
('name::', 'Retina photoreceptor L cone cell', 'id:', 'nlx_cell_100210', 'prefix:', '')
(' syn::', 'Retina photoreceptor cone L')
('name::', 'Retina photoreceptor rod cell', 'id:', 'nlx_cell_100212', 'prefix:', '')
(' syn::', 'rod cell')
(' syn::', 'rod')
(' syn::', 'retinal rod photoreceptor')
('name::', 'Pb-eb-eb neuron', 'id:', 'nlx_147379', 'prefix:', '')
('name::', 'Gravity sensitive Johnston organ neuron', 'id:', 'nlx_148422', 'prefix:', '')
(' syn::', "gravity sensitive Johnston''s organ neuron")
('name::', 'Wind sensitive Johnston organ neuron', 'id:', 'nlx_148423', 'prefix:', '')
(' syn::', "wind sensitive Johnston''s organ neuron")
('name::', 'Olfactory bulb (main) adult-born granule cell', 'id:', 'nlx_144252', 'prefix:', '')
('name::', 'Zone A Johnston organ neuron', 'id:', 'nlx_148427', 'prefix:', '')
(' syn::', 'zone A JON')
('name::', 'PreBotzinger complex neuron', 'id:', 'nlx_151905', 'prefix:', '')
('name::', 'Mesothoracic anterior fascicle neuron', 'id:', 'nlx_146820', 'prefix:', '')
('name::', 'Lamprey motor neuron', 'id:', 'nlx_151909', 'prefix:', '')
('name::', 'Mauthner cell', 'id:', 'nlx_151908', 'prefix:', '')
(' syn::', 'M-cell')
('name::', 'Oculomotor nucleus motor neuron', 'id:', 'nlx_77027', 'prefix:', '')
(' syn::', 'oculomotor nucleus motor cell')
(' syn::', '3rd nerve motor neuron')
(' syn::', 'IIIrd nerve motor neuron')
('name::', 'Cochlea outer hair cell', 'id:', 'sao1582628662', 'prefix:', '')
(' syn::', 'Cochlear Outer Hair Cell')
(' syn::', 'Outer Hair Cell')
('name::', 'Mushroom body ventral lobe arborizing neuron 1', 'id:', 'nlx_148584', 'prefix:', '')
(' syn::', 'MB-V1')
('name::', 'Mushroom body ventral lobe arborizing neuron 4', 'id:', 'nlx_148587', 'prefix:', '')
(' syn::', 'MB-V4')
('name::', 'Colliculus superior pyramidal cell', 'id:', 'BAMSC1123', 'prefix:', '')
(' syn::', 'pyramidal cell')
('name::', 'Mushroom body medial lobe arborizing neuron 5', 'id:', 'nlx_148581', 'prefix:', '')
(' syn::', 'MB-M5')
('name::', 'Mushroom body medial lobe arborizing neuron 4', 'id:', 'nlx_148580', 'prefix:', '')
(' syn::', 'MB-M4')
('name::', 'Mushroom body medial lobe arborizing neuron 7', 'id:', 'nlx_148583', 'prefix:', '')
(' syn::', 'MB-M7')
('name::', 'Mushroom body medial lobe arborizing neuron 6', 'id:', 'nlx_148582', 'prefix:', '')
(' syn::', 'MB-M6')
('name::', 'Retina photoreceptor cone cell', 'id:', 'sao1103104164', 'prefix:', '')
(' syn::', 'Cone cell')
(' syn::', 'cone')
(' syn::', 'retinal cone')
('name::', 'Mushroom body medial-vertical lobe arborizing neuron 1', 'id:', 'nlx_148589', 'prefix:', '')
(' syn::', 'MB-MV1')
('name::', 'Mushroom body calyx-pedunculus arborizing neuron 1', 'id:', 'nlx_148588', 'prefix:', '')
(' syn::', 'MB-C1')
('name::', 'Spinal cord intermediate horn motor neuron sympathetic', 'id:', 'nifext_109', 'prefix:', '')
(' syn::', 'Sympathetic motor neuron')
(' syn::', 'preganglionic sympathetic neuron')
('name::', 'Substantia nigra pars reticulata interneuron GABA', 'id:', 'nifext_147', 'prefix:', '')
(' syn::', 'substantia nigra pars reticulata GABA interneuron')
(' syn::', 'Substantia nigra pars reticulata GABA neuron')
(' syn::', 'Pars reticulata Gaba interneuron')
('name::', 'Ventral group vA neuron', 'id:', 'nlx_147803', 'prefix:', '')
(' syn::', 'VA neuron')
('name::', 'Bed nucleus of the stria terminalis small pyramidal neuron', 'id:', 'BAMSC987', 'prefix:', '')
(' syn::', 'small pyramidal neuron')
(' syn::', 'small pyramidal cell')
(' syn::', 'BNST small pyramidal neuron)')
('name::', 'Bed nucleus of the stria terminalis spiny bipolar neuron', 'id:', 'BAMSC986', 'prefix:', '')
(' syn::', 'spiny bipolar neuron')
(' syn::', 'spiny bipolar cell')
('name::', 'III1 motor neuron', 'id:', 'nlx_147779', 'prefix:', '')
('name::', 'B2 motor neuron', 'id:', 'nlx_147778', 'prefix:', '')
('name::', 'Cerebellum candelabrum cell', 'id:', 'BAMSC981', 'prefix:', '')
(' syn::', 'candelabrum cell')
(' syn::', 'candelabrum neuron')
('name::', 'Trigeminal nucleus intrinsic cell', 'id:', 'nifext_97', 'prefix:', '')
(' syn::', 'Trigeminal nucleus intrinsic neuron')
('name::', 'III3 motor neuron', 'id:', 'nlx_147777', 'prefix:', '')
('name::', 'B1 motor neuron', 'id:', 'nlx_147776', 'prefix:', '')
('name::', 'Direct flight muscle motor neuron', 'id:', 'nlx_147775', 'prefix:', '')
('name::', 'Bed nucleus of the stria terminalis basket neuron', 'id:', 'BAMSC988', 'prefix:', '')
(' syn::', 'bed nucleus of stria terminalis basket cell')
(' syn::', 'bed nucleus of stria terminalis basket neuron')
(' syn::', 'Bed nucleus of the stria terminalis basket neuron')
(' syn::', 'BNST basket neuron')
('name::', 'Spinal cord ventral horn interneuron V2a', 'id:', 'nlx_144179', 'prefix:', '')
(' syn::', 'V2a neuron')
(' syn::', 'V2a interneuron')
('name::', 'Nucleus laminaris principal neuron', 'id:', 'nlx_151646', 'prefix:', '')
(' syn::', 'Analogous to the Medial Superior Olive (MSO) in mammals')
('name::', 'Glutamatergic neuron (FBbt Term)', 'id:', 'nlx_148635', 'prefix:', '')
('name::', 'Larval olfactory receptor neuron Or45b', 'id:', 'nlx_148736', 'prefix:', '')
(' syn::', 'ORN (Or45b)')
('name::', 'Larval olfactory receptor neuron Or49a', 'id:', 'nlx_148737', 'prefix:', '')
(' syn::', 'ORN (Or49a)')
('name::', 'Larval olfactory receptor neuron Or42b', 'id:', 'nlx_148734', 'prefix:', '')
(' syn::', 'ORN (Or42b)')
('name::', 'Larval olfactory receptor neuron Or45a', 'id:', 'nlx_148735', 'prefix:', '')
(' syn::', 'ORN (Or45a)')
('name::', 'Larval olfactory receptor neuron Or35a', 'id:', 'nlx_148732', 'prefix:', '')
(' syn::', 'ORN (Or35a)')
('name::', 'Larval olfactory receptor neuron Or42a', 'id:', 'nlx_148733', 'prefix:', '')
(' syn::', 'ORN (Or42a)')
('name::', 'Larval olfactory receptor neuron Or33a', 'id:', 'nlx_148730', 'prefix:', '')
(' syn::', 'ORN (Or33a)')
('name::', 'Larval olfactory receptor neuron Or33b / Or47a', 'id:', 'nlx_148731', 'prefix:', '')
(' syn::', 'ORN (Or33b)')
('name::', 'Thalamus geniculate nucleus (lateral) interneuron', 'id:', 'nifext_46', 'prefix:', '')
(' syn::', 'Small interneuron thalamic')
(' syn::', 'small thalamic interneuron')
('name::', 'Colliculus superior piriform cell', 'id:', 'BAMSC1117', 'prefix:', '')
(' syn::', 'piriform cell')
(' syn::', 'piriform neuron')
('name::', 'Thalamus reticular nucleus cell', 'id:', 'nifext_45', 'prefix:', '')
(' syn::', 'thalamic reticular cell')
(' syn::', 'Thalamic reticular nucleus neuron')
(' syn::', 'Thalamic reticular neuron')
('name::', 'Retina ganglion cell B3', 'id:', 'BAMSC1049', 'prefix:', '')
(' syn::', 'retinal ganglion cell B3')
('name::', 'Larval olfactory receptor neuron Or59a', 'id:', 'nlx_148738', 'prefix:', '')
(' syn::', 'ORN (Or59a)')
('name::', 'Larval olfactory receptor neuron Or63a', 'id:', 'nlx_148739', 'prefix:', '')
(' syn::', 'ORN (Or63a)')
('name::', 'Retina stratified diffuse amacrine cell', 'id:', 'BAMSC1056', 'prefix:', '')
(' syn::', 'stratified diffuse amacrine cell')
('name::', 'Retina bistratified amacrine cell', 'id:', 'BAMSC1055', 'prefix:', '')
(' syn::', 'bistratified amacrine cell')
('name::', 'Retina ganglion cell C others', 'id:', 'BAMSC1051', 'prefix:', '')
(' syn::', 'retinal ganglion cell C others')
('name::', 'Retina ganglion cell C1', 'id:', 'BAMSC1050', 'prefix:', '')
(' syn::', 'retinal ganglion cell C1')
('name::', 'Cochlear nucleus (dorsal) cartwheel cell', 'id:', 'nifext_76', 'prefix:', '')
(' syn::', 'Cartwheel neuron')
('name::', 'Midline neuron', 'id:', 'nlx_148280', 'prefix:', '')
('name::', 'Cochlea inner hair cell', 'id:', 'sao429277527', 'prefix:', '')
(' syn::', 'Cochlear Inner Hair Cell')
(' syn::', 'Inner Hair Cell')
(' syn::', 'Cochlea hair cell inner')
('name::', 'Aplysia buccal 8', 'id:', 'nlx_152509', 'prefix:', '')
('name::', 'Substantia nigra pars reticulata principal cell', 'id:', 'nifext_148', 'prefix:', '')
(' syn::', 'Substantia nigra pars reticulata principal neuron')
('name::', 'Globus pallidus principal cell', 'id:', 'nifext_149', 'prefix:', '')
('name::', 'Peptidergic neuron', 'id:', 'nlx_147801', 'prefix:', '')
('name::', 'Pdf neuron of abdominal neuromere', 'id:', 'nlx_147800', 'prefix:', '')
('name::', 'Neostriatum SOM/NOS cell', 'id:', 'nifext_144', 'prefix:', '')
(' syn::', 'striatal SOM/NOS interneuron')
(' syn::', 'SOM/NOS interneuron')
(' syn::', 'neostriatum SOM/NOS interneuron')
(' syn::', 'LTS cell')
(' syn::', 'PLTS cell')
(' syn::', 'somatostatin/nitric oxide synthase interneuron')
('name::', 'Dorsal group dA neuron', 'id:', 'nlx_147802', 'prefix:', '')
('name::', 'Neostriatum gaba/parvalbumin interneuron', 'id:', 'nifext_143', 'prefix:', '')
(' syn::', 'GABA/parvalbumin striatal interneuron')
(' syn::', 'fast-spiking interneuron')
(' syn::', 'FS Cell')
('name::', 'Trochlear nucleus motor neuron', 'id:', 'nlx_70345', 'prefix:', '')
(' syn::', 'trochlear nucleus motor cell')
(' syn::', '4th nerve motor neuron')
(' syn::', 'IVth nerve motor neuron')
('name::', 'U neuron', 'id:', 'nlx_146556', 'prefix:', '')
(' syn::', 'U / CQ neuron')
('name::', 'U1 neuron', 'id:', 'nlx_146557', 'prefix:', '')
('name::', 'Spinal cord ventral horn motor neuron gamma', 'id:', 'sao1438006234', 'prefix:', '')
(' syn::', 'fusimotor neuron')
(' syn::', 'Gamma motor neuron')
('name::', 'Tracheal innervating neuron', 'id:', 'nlx_147852', 'prefix:', '')
('name::', 'U2 neuron', 'id:', 'nlx_146558', 'prefix:', '')
('name::', 'U3 neuron', 'id:', 'nlx_146559', 'prefix:', '')
('name::', 'Facial nucleus motor neuron', 'id:', 'nlx_50129', 'prefix:', '')
(' syn::', 'facial nucleus motor cell')
(' syn::', '7th nerve motor neuron')
(' syn::', 'VIIth nerve motor neuron')
('name::', 'Indirect flight muscle motor neuron MN2', 'id:', 'nlx_147786', 'prefix:', '')
('name::', 'Indirect flight muscle motor neuron MN3', 'id:', 'nlx_147787', 'prefix:', '')
('name::', 'Indirect flight muscle motor neuron', 'id:', 'nlx_147784', 'prefix:', '')
('name::', 'Indirect flight muscle motor neuron MN1', 'id:', 'nlx_147785', 'prefix:', '')
('name::', 'Ventral tp motor neuron', 'id:', 'nlx_147782', 'prefix:', '')
('name::', 'Endocrine neuron', 'id:', 'nlx_148126', 'prefix:', '')
('name::', 'I1 motor neuron', 'id:', 'nlx_147780', 'prefix:', '')
('name::', 'Dorsal tp motor neuron', 'id:', 'nlx_147781', 'prefix:', '')
('name::', 'Retina thick dendrite horizontal cell', 'id:', 'nlx_152141', 'prefix:', '')
(' syn::', 'H cell')
('name::', 'Indirect flight muscle motor neuron MN4', 'id:', 'nlx_147788', 'prefix:', '')
('name::', 'Indirect flight muscle motor neuron MN5', 'id:', 'nlx_147789', 'prefix:', '')
('name::', 'Ventral brain cluster neuron', 'id:', 'nlx_147894', 'prefix:', '')
('name::', 'Dentate gyrus mossy cell', 'id:', 'nlx_22799', 'prefix:', '')
(' syn::', 'Mossy cell')
(' syn::', 'Mossy neuron')
(' syn::', 'Dentate gyrus mossy neuron')
('name::', 'Lch3 neuron', 'id:', 'nlx_146738', 'prefix:', '')
('name::', 'LP neuron', 'id:', 'nlx_148123', 'prefix:', '')
('name::', 'DN3a neuron', 'id:', 'nlx_148122', 'prefix:', '')
('name::', 'Dch3 neuron', 'id:', 'nlx_146730', 'prefix:', '')
('name::', 'Dch3 / 1 neuron', 'id:', 'nlx_146731', 'prefix:', '')
('name::', 'LesA neuron', 'id:', 'nlx_146732', 'prefix:', '')
('name::', 'LesB neuron', 'id:', 'nlx_146733', 'prefix:', '')
('name::', 'LesC neuron', 'id:', 'nlx_146734', 'prefix:', '')
('name::', 'DN1p neuron', 'id:', 'nlx_148121', 'prefix:', '')
(' syn::', 'DN1p')
('name::', 'Les4 neuron', 'id:', 'nlx_146737', 'prefix:', '')
('name::', 'Fan-shaped neuron', 'id:', 'nlx_147391', 'prefix:', '')
(' syn::', 'F neuron')
('name::', 'Lateral fan-shaped neuron Fl', 'id:', 'nlx_147393', 'prefix:', '')
('name::', 'DN1a neuron', 'id:', 'nlx_148120', 'prefix:', '')
('name::', 'Extrinsic pb neuron', 'id:', 'nlx_147395', 'prefix:', '')
('name::', 'Extrinsic neuron', 'id:', 'nlx_147394', 'prefix:', '')
('name::', 'Extrinsic no neuron', 'id:', 'nlx_147396', 'prefix:', '')
('name::', 'Intrinsic vbo neuron', 'id:', 'nlx_147399', 'prefix:', '')
('name::', 'Intrinsic neuron (FBbt Term)', 'id:', 'nlx_147398', 'prefix:', '')
(' syn::', 'local interneuron')
('name::', 'Kenyon cell', 'id:', 'nlx_147420', 'prefix:', '')
(' syn::', 'intrinsic cell of mushroom body')
('name::', 'Tergal depressor of trochanter muscle motor neuron', 'id:', 'nlx_147783', 'prefix:', '')
('name::', 'Fan-shaped neuron F3', 'id:', 'nlx_148217', 'prefix:', '')
(' syn::', 'fan shaped neuron F3')
('name::', 'Hippocampus CA3 pyramidal cell', 'id:', 'sao383526650', 'prefix:', '')
(' syn::', 'Hippocampal CA3 Pyramidal Neuron')
(' syn::', 'CA3 pyramidal neuron')
(' syn::', 'CA3 pyramidal cell')
('name::', 'VesA neuron', 'id:', 'nlx_146759', 'prefix:', '')
('name::', 'Eb-pb-vbo neuron', 'id:', 'nlx_147371', 'prefix:', '')
('name::', 'Fan-shaped neuron F4', 'id:', 'nlx_148218', 'prefix:', '')
(' syn::', 'fan shaped neuron F4')
('name::', 'Hirudo Retzius cell', 'id:', 'nlx_31744', 'prefix:', '')
(' syn::', 'Retzius')
(' syn::', 'R Cell')
('name::', 'Optic lobe neuron', 'id:', 'nlx_147433', 'prefix:', '')
('name::', 'Abducens nucleus motor neuron', 'id:', 'nlx_16848', 'prefix:', '')
(' syn::', 'abducens nucleus motor cell')
(' syn::', '6th nerve motor neuron')
(' syn::', 'VIth nerve motor neuron')
('name::', 'Stomatogastric ganglion anterior burster neuron', 'id:', 'nlx_152047', 'prefix:', '')
('name::', 'Rh5 photoreceptor of Bolwig organ', 'id:', 'nlx_148467', 'prefix:', '')
(' syn::', "Rh5-expressing photoreceptor of Bolwig''s organ")
('name::', 'Chemosensory neuron of adult labial sensillum 9', 'id:', 'nlx_148464', 'prefix:', '')
('name::', 'Chemosensory neuron of adult labial sensillum 7', 'id:', 'nlx_148465', 'prefix:', '')
('name::', 'Chemosensory neuron of adult labial sensillum 8', 'id:', 'nlx_148462', 'prefix:', '')
('name::', 'Mechanosensory neuron of adult labial sensillum 8', 'id:', 'nlx_148463', 'prefix:', '')
('name::', 'Mechanosensory neuron of adult labial sensillum 6', 'id:', 'nlx_148460', 'prefix:', '')
('name::', 'Mechanosensory neuron of adult labial sensillum 9', 'id:', 'nlx_148461', 'prefix:', '')
('name::', 'Adult anterior LK leucokinin neuron', 'id:', 'nlx_149018', 'prefix:', '')
(' syn::', 'adult ALK neuron')
('name::', 'Vertical fiber system neuron pb3', 'id:', 'nlx_148239', 'prefix:', '')
('name::', 'Vertical fiber system neuron pb4', 'id:', 'nlx_148238', 'prefix:', '')
('name::', 'Adult optic lobe OL tachykinin neuron', 'id:', 'nlx_149006', 'prefix:', '')
(' syn::', 'adult OL neuron')
('name::', 'Adult tachykinin neuron of the thoracic-abdominal ganglion', 'id:', 'nlx_149010', 'prefix:', '')
('name::', 'Vertical fiber system neuron pb5', 'id:', 'nlx_148237', 'prefix:', '')
('name::', 'Adult leucokinin SELK neuron of the subesophageal ganglion', 'id:', 'nlx_149015', 'prefix:', '')
(' syn::', 'adult SELK neuron')
('name::', 'Vertical fiber system neuron pb7', 'id:', 'nlx_148235', 'prefix:', '')
('name::', 'Adult lateral horn LHKL leucokinin neuron', 'id:', 'nlx_149017', 'prefix:', '')
(' syn::', 'LHLK')
('name::', 'Adult protocerebral MPP tachykinin neuron', 'id:', 'nlx_149004', 'prefix:', '')
(' syn::', 'adult MPP neuron')
('name::', 'Bed nucleus of the stria terminalis spiny neuron with chandelier-like axon', 'id:', 'BAMSC992', 'prefix:', '')
(' syn::', 'dense axon plexus forming neuron')
(' syn::', 'dense axon plexus forming cell')
(' syn::', 'BNST spiny neuron with chandelier-like axon')
('name::', 'Adult protocerebral LPP1 tachykinin neuron', 'id:', 'nlx_149003', 'prefix:', '')
(' syn::', 'adult LPP1 neuron')
('name::', 'Trapezoid body principal cell', 'id:', 'nifext_78', 'prefix:', '')
(' syn::', 'Trapezoid body principal neuron')
('name::', 'Accessory nucleus motor neuron', 'id:', 'nlx_83979', 'prefix:', '')
(' syn::', 'spinal accessory nerve')
(' syn::', 'acessory nucleus motor cell')
(' syn::', '11th nerve motor neuron')
(' syn::', 'XIth nerve motor neuron')
('name::', 'Adult protocerebral LPP2 tachykinin neuron', 'id:', 'nlx_149002', 'prefix:', '')
(' syn::', 'adult LPP2 neuron')
('name::', 'Vertical fiber system neuron pb2', 'id:', 'nlx_148240', 'prefix:', '')
('name::', 'Terminal organ neuron of dorsal organ ganglion', 'id:', 'nlx_148504', 'prefix:', '')
(' syn::', 'TODO neuron')
('name::', 'Labral sense organ neuron', 'id:', 'nlx_147736', 'prefix:', '')
('name::', 'Ventral cibarial sense organ neuron of proximal sensillum', 'id:', 'nlx_147735', 'prefix:', '')
('name::', 'Cibarial pump muscle neuron', 'id:', 'nlx_147733', 'prefix:', '')
('name::', 'Dorsal cibarial sense organ neuron', 'id:', 'nlx_147732', 'prefix:', '')
('name::', 'Giant fiber neuron', 'id:', 'nlx_147730', 'prefix:', '')
(' syn::', 'GF')
('name::', 'Adult labial sensory neuron', 'id:', 'nlx_147739', 'prefix:', '')
('name::', 'Scolopidial neuron', 'id:', 'nlx_147853', 'prefix:', '')
('name::', 'Retina stratified amacrine cell', 'id:', 'BAMSC1013', 'prefix:', '')
('name::', 'Retina wide field diffuse amacrine cell', 'id:', 'BAMSC1012', 'prefix:', '')
('name::', 'Retina C ganglion cell', 'id:', 'BAMSC1011', 'prefix:', '')
(' syn::', 'Retina ganglion cell C')
('name::', 'Retina B ganglion cell', 'id:', 'BAMSC1010', 'prefix:', '')
(' syn::', 'Retina ganglion cell B')
('name::', 'Retina type 3 cone bipolar cell', 'id:', 'BAMSC1017', 'prefix:', '')
(' syn::', 'type 3 cone bipolar cell')
('name::', 'Retina type 2 cone bipolar cell', 'id:', 'BAMSC1016', 'prefix:', '')
(' syn::', 'type 2 cone bipolar cell')
('name::', 'VesD neuron', 'id:', 'nlx_146762', 'prefix:', '')
('name::', 'Retina type 5 cone bipolar cell', 'id:', 'BAMSC1019', 'prefix:', '')
(' syn::', 'type 5 cone bipolar cell')
('name::', 'Retina type 4 cone bipolar cell', 'id:', 'BAMSC1018', 'prefix:', '')
(' syn::', 'type 4 cone bipolar cell')
('name::', 'Dentate gyrus spiny CR cell', 'id:', 'nlx_78883', 'prefix:', '')
(' syn::', 'DG Spiny CR immunoreactive cell')
(' syn::', 'DG Spiny CR-positive interneurons')
('name::', 'Zoidberg Neuron', 'id:', 'nlx_155547', 'prefix:', '')
(' syn::', 'Starburst Neuron')
(' syn::', 'Starburst Amacrine Cell')
(' syn::', 'n00b neuron')
(' syn::', 'Zoidberg cell')
('name::', 'Pacemaker neuron', 'id:', 'nlx_147931', 'prefix:', '')
('name::', 'Spinal cord ventral horn interneuron V2b', 'id:', 'nlx_144180', 'prefix:', '')
('name::', 'Zone C Johnston organ neuron', 'id:', 'nlx_148429', 'prefix:', '')
(' syn::', 'zone C JON')
('name::', 'Olfactory bulb (accessory) granule cell', 'id:', 'nlx_cell_20090401', 'prefix:', '')
(' syn::', 'Accessory olfactory bulb granule neuron')
(' syn::', 'Accessory olfactory bulb granule cell')
('name::', 'Ganglion cell', 'id:', 'nlx_147840', 'prefix:', '')
('name::', 'Serotonergic-abdominal giant neuron', 'id:', 'nlx_148988', 'prefix:', '')
(' syn::', 's-Abg')
('name::', 'Multidendritic neuron', 'id:', 'nlx_147849', 'prefix:', '')
(' syn::', 'Type II neuron')
('name::', 'Eo neuron', 'id:', 'nlx_147848', 'prefix:', '')
('name::', 'Type III sensory neuron of ventral ipsilateral fibers', 'id:', 'nlx_147742', 'prefix:', '')
('name::', 'Type IV sensory neuron of dorsal ipsilateral fibers', 'id:', 'nlx_147743', 'prefix:', '')
('name::', 'Type I sensory neuron of coiled fibers', 'id:', 'nlx_147740', 'prefix:', '')
('name::', 'Type II sensory neuron of shrubby fibers', 'id:', 'nlx_147741', 'prefix:', '')
('name::', 'Type VII sensory neuron of central fibers', 'id:', 'nlx_147746', 'prefix:', '')
('name::', 'Adult labial interneuron', 'id:', 'nlx_147747', 'prefix:', '')
('name::', 'Type V sensory neuron of ventral contralateral fibers', 'id:', 'nlx_147744', 'prefix:', '')
('name::', 'Type VI sensory neuron of dorsal contralateral fibers', 'id:', 'nlx_147745', 'prefix:', '')
('name::', 'Type A interneuron', 'id:', 'nlx_147748', 'prefix:', '')
('name::', 'Mushroom body intrinsic neuron', 'id:', 'nlx_148164', 'prefix:', '')
('name::', "V'es3 neuron", 'id:', 'nlx_146769', 'prefix:', '')
('name::', "V'es2 neuron", 'id:', 'nlx_146768', 'prefix:', '')
('name::', 'Mushroom body medial lobe arborizing neuron 2', 'id:', 'nlx_148578', 'prefix:', '')
(' syn::', 'MB-M2')
('name::', 'Retina amacrine cell', 'id:', 'nifext_36', 'prefix:', '')
(' syn::', 'Amacrine Neuron type II')
(' syn::', 'Type II Amacrine cell')
('name::', 'Retina parasol bipolar cell', 'id:', 'nifext_35', 'prefix:', '')
(' syn::', 'Parasol cell')
(' syn::', 'Retina bipolar cell parasol')
('name::', 'Retina midget bipolar cell', 'id:', 'nifext_34', 'prefix:', '')
(' syn::', 'Midget cell')
(' syn::', 'Retina bipolar cell midget')
('name::', 'Retina bipolar cell off', 'id:', 'nifext_33', 'prefix:', '')
(' syn::', 'Off cell')
('name::', 'Retina bipolar cell on', 'id:', 'nifext_32', 'prefix:', '')
(' syn::', 'On cell')
('name::', 'Retina bipolar cell', 'id:', 'nifext_31', 'prefix:', '')
(' syn::', 'Retinal Bipolar Neuron')
(' syn::', 'retinal bipolar cell')
('name::', 'Retina displaced amacrine cell', 'id:', 'nifext_39', 'prefix:', '')
(' syn::', 'Displaced amacrine cell')
(' syn::', 'Retina amacrine cell displaced')
('name::', 'Retina interplexiform cell', 'id:', 'nifext_38', 'prefix:', '')
(' syn::', 'Interplexiform amacrine cell')
('name::', 'Mushroom body medial lobe arborizing neuron 3', 'id:', 'nlx_148579', 'prefix:', '')
(' syn::', 'MB-M3')
('name::', 'LesD neuron', 'id:', 'nlx_146735', 'prefix:', '')
('name::', 'Spinal cord ventral horn interneuron IB', 'id:', 'nifext_111', 'prefix:', '')
(' syn::', 'IB Interneuron')
('name::', 'Spinal cord ventral horn interneuron IA', 'id:', 'nifext_110', 'prefix:', '')
(' syn::', 'Spinal Ia interneuron')
(' syn::', 'Spinal interneuron IA')
('name::', 'Spinal cord ventral horn interneuron Renshaw', 'id:', 'nifext_113', 'prefix:', '')
(' syn::', 'Renshaw cell')
(' syn::', 'Renshaw interneuron')
('name::', 'Spinal cord ventral horn interneuron II', 'id:', 'nifext_112', 'prefix:', '')
('name::', 'Olfactory tubercle Islets of Calleja DA cell', 'id:', 'nifext_155', 'prefix:', '')
(' syn::', 'Islands of Calleja dopamine cell')
(' syn::', 'Islets of Calleja dopamine cell')
(' syn::', 'Olfactory tubercle Islets of Calleja DA neuron')
('name::', 'Spinal cord ventral horn interneuron FRA', 'id:', 'nifext_114', 'prefix:', '')
(' syn::', 'FFA interneuron')
(' syn::', 'Flexor reflex afferent interneuron')
('name::', 'Olfactory epithelium main sensory cell', 'id:', 'nifext_116', 'prefix:', '')
(' syn::', 'olfactory receptor cell')
(' syn::', 'olfactory sensory neuron')
('name::', 'Olfactory epithelium main supporting cell', 'id:', 'nifext_119', 'prefix:', '')
(' syn::', 'sustentacular cell')
(' syn::', 'supporting cell')
(' syn::', 'sustentacular main olfactory epithelium supporting cell')
('name::', 'Olfactory cortex horizontal cell', 'id:', 'nifext_118', 'prefix:', '')
(' syn::', 'Horizontal cell (olfactory)')
(' syn::', 'olfactory horizontal cell')
('name::', 'Stomatogastric ganglion pyloric dilator neuron', 'id:', 'nlx_152045', 'prefix:', '')
('name::', 'LP1 neuron', 'id:', 'nlx_146580', 'prefix:', '')
('name::', 'Neuroendocrine motor magnocellular neurosecretory cell', 'id:', 'nlx_cell_20090501', 'prefix:', '')
(' syn::', 'Hypothalamic magnocellular neurosecretory cell')
(' syn::', 'Hypothalamic magnocellular neurosecretory neuron')
(' syn::', 'Magnocellular secretory neuron')
('name::', 'S-LNv neuron', 'id:', 'nlx_148119', 'prefix:', '')
(' syn::', 's-LNv')
('name::', 'Neocortex bouquet double cell', 'id:', 'sao910084726', 'prefix:', '')
(' syn::', 'Double Bouquet Cell')
('name::', 'Larval olfactory receptor neuron Or85c', 'id:', 'nlx_148744', 'prefix:', '')
(' syn::', 'ORN (Or85c)')
('name::', 'Neocortex Martinotti cell', 'id:', 'nifext_55', 'prefix:', '')
(' syn::', 'Martinotti cell')
('name::', 'Olfactory tubercle Islets of Calleja GABA cell', 'id:', 'nifext_154', 'prefix:', '')
(' syn::', 'Islands of Calleja Gaba interneuron')
(' syn::', 'Islets of Calleja Gaba interneuron')
(' syn::', 'Olfactory tubercle Islets of Calleja GABA interneuron')
('name::', 'Median fan-shaped neuron Fm', 'id:', 'nlx_147392', 'prefix:', '')
(' syn::', 'Fm1')
('name::', 'Abdominal intersegmental trachea-associated neuron istd', 'id:', 'nlx_146904', 'prefix:', '')
('name::', 'Gustatory receptor neuron of the hypophysis', 'id:', 'nlx_148509', 'prefix:', '')
('name::', 'Gustatory receptor neuron of the epiphysis', 'id:', 'nlx_148508', 'prefix:', '')
('name::', 'Gustatory receptor neuron of terminal organ', 'id:', 'nlx_148505', 'prefix:', '')
('name::', 'Dorsal motor nucleus of vagus motor neuron', 'id:', 'nlx_38336', 'prefix:', '')
('name::', 'Gustatory receptor neuron of the ventral organ', 'id:', 'nlx_148507', 'prefix:', '')
('name::', 'Gustatory receptor neuron of the dorsal organ', 'id:', 'nlx_148506', 'prefix:', '')
('name::', 'Vertical fiber system neuron', 'id:', 'nlx_147368', 'prefix:', '')
(' syn::', 'VFS')
('name::', 'Horizontal fiber system neuron', 'id:', 'nlx_147369', 'prefix:', '')
(' syn::', 'HFS')
('name::', 'VesC neuron', 'id:', 'nlx_146761', 'prefix:', '')
('name::', 'VesB neuron', 'id:', 'nlx_146760', 'prefix:', '')
('name::', "V'esB neuron", 'id:', 'nlx_146767', 'prefix:', '')
('name::', "V'esA neuron", 'id:', 'nlx_146766', 'prefix:', '')
('name::', 'Ves3 neuron', 'id:', 'nlx_146765', 'prefix:', '')
('name::', 'VesM neuron', 'id:', 'nlx_146764', 'prefix:', '')
('name::', 'Adult DN period neuron', 'id:', 'nlx_147362', 'prefix:', '')
('name::', 'DN1 neuron', 'id:', 'nlx_147363', 'prefix:', '')
('name::', 'DN2 neuron', 'id:', 'nlx_147364', 'prefix:', '')
('name::', 'DN3 neuron', 'id:', 'nlx_147365', 'prefix:', '')
('name::', 'Small field neuron', 'id:', 'nlx_147367', 'prefix:', '')
('name::', 'Antennal olfactory receptor neuron', 'id:', 'nlx_148073', 'prefix:', '')
(' syn::', 'antennal ORN')
('name::', 'LP2 neuron', 'id:', 'nlx_148072', 'prefix:', '')
('name::', 'Cochlear nucleus (ventral) multipolar cell', 'id:', 'nlx_cell_20081202', 'prefix:', '')
('name::', 'Thalamus geniculate nucleus (lateral) principal neuron', 'id:', 'nlx_cell_20081203', 'prefix:', '')
(' syn::', 'Relay cell')
(' syn::', 'Thalamic relay neuron')
(' syn::', 'Thalamus relay neuron')
(' syn::', 'Thalamocortical cell')
(' syn::', 'Thalamocortical neuron')
(' syn::', 'Thalamus relay cell')
('name::', 'Cochlear nucleus (ventral) spherical bushy cell', 'id:', 'nlx_cell_20081201', 'prefix:', '')
(' syn::', 'Bushy neuron')
(' syn::', 'Bushy cell')
(' syn::', 'ventral cochlear nucleus bushy cell')
('name::', 'Neocortex Cajal-Retzius cell', 'id:', 'nlx_cell_20081206', 'prefix:', '')
(' syn::', 'Cajal-Retzius Cell')
('name::', 'Abdominal posterior fascicle neuron', 'id:', 'nlx_147164', 'prefix:', '')
('name::', 'Taste bud type 3 cell', 'id:', 'nlx_151577', 'prefix:', '')
('name::', 'Spinal cord border cell', 'id:', 'nlx_143585', 'prefix:', '')
(' syn::', 'Spinal border cell')
(' syn::', 'spinal border neuron')
('name::', 'Johnston organ neuron tonically activated by arista deflection', 'id:', 'nlx_148431', 'prefix:', '')
(' syn::', "Johnston''s organ neuron tonically activated by arista deflection")
('name::', 'Johnston organ neuron phasically activated by arista deflection', 'id:', 'nlx_148430', 'prefix:', '')
(' syn::', "Johnston''s organ neuron phasically activated by arista deflection")
('name::', 'Johnston organ neuron activated by tonic anterior arista deflection', 'id:', 'nlx_148433', 'prefix:', '')
(' syn::', "Johnston''s organ neuron activated by tonic anterior arista deflection")
('name::', 'Johnston organ neuron activated by tonic posterior arista deflection', 'id:', 'nlx_148432', 'prefix:', '')
(' syn::', "Johnston''s organ neuron activated by tonic posterior arista deflection")
('name::', 'Neocortex Dorsolateral Prefrontal Area layer 1 parvalbumin cell', 'id:', 'nlx_157255', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Retina Off-Upsilon Ganglion Cell', 'id:', 'nlx_144269', 'prefix:', '')
(' syn::', 'Retina Ganglion Cell Off-Upsilon')
('name::', 'Superior colliculus stellate cell of the zone of vertical cells', 'id:', 'BAMSC1131', 'prefix:', '')
(' syn::', 'stellate cell of the zone of vertical cells')
('name::', 'Lateral fan-shaped neuron Fl3', 'id:', 'nlx_148206', 'prefix:', '')
('name::', 'Lateral fan-shaped neuron Fl4', 'id:', 'nlx_148207', 'prefix:', '')
('name::', 'Lateral fan-shaped neuron Fl1', 'id:', 'nlx_148204', 'prefix:', '')
('name::', 'Lateral fan-shaped neuron Fl2', 'id:', 'nlx_148205', 'prefix:', '')
('name::', 'Lateral fan-shaped neuron FE1', 'id:', 'nlx_148208', 'prefix:', '')
('name::', 'Lateral fan-shaped neuron ExFl1', 'id:', 'nlx_148209', 'prefix:', '')
('name::', 'Trapezoid body medial nucleus principal cell', 'id:', 'nifext_79', 'prefix:', '')
(' syn::', 'Principal Cells Medial Nucleus Trapezoid Body')
(' syn::', 'Trapezoid body medial nucleus principal neuron')
('name::', 'Stomatogastric ganglion lateral gastric neuron', 'id:', 'nlx_152044', 'prefix:', '')
('name::', 'Somatogastric ganglion neuron', 'id:', 'nlx_151986', 'prefix:', '')
('name::', 'Locus coeruleus NA neuron', 'id:', 'nlx_cell_20090202', 'prefix:', '')
(' syn::', 'Locus coeruleus noradrenergic neuron')
('name::', 'Basalis nucleus cholinergic neuron', 'id:', 'nlx_cell_20090203', 'prefix:', '')
(' syn::', 'Cholinergic nucleus basalis cell')
(' syn::', 'Nucleus basalis polyhedral neuron')
(' syn::', 'Cholinergic nucleus basalis neuron')
('name::', 'Pupal protocerebral LPP2 tachykinin neuron', 'id:', 'nlx_148999', 'prefix:', '')
(' syn::', 'pupal LPP2 neuron')
('name::', 'Cochlear nucleus (dorsal) Golgi cell', 'id:', 'nifext_136', 'prefix:', '')
(' syn::', 'deep cerebellar nucleus GABAergic cell')
(' syn::', 'DCN Gabaergic cell')
(' syn::', 'Dorsal cochlear nucleus gabaergic cell')
('name::', 'Tachykinin neuron', 'id:', 'nlx_148991', 'prefix:', '')
(' syn::', 'LTK-LI')
('name::', 'Pupal large descending DN tachykinin neuron', 'id:', 'nlx_148997', 'prefix:', '')
(' syn::', 'pupal tachykinin DN neuron')
('name::', 'Dorsal anterior lateral neuron of the protocerebrum', 'id:', 'nlx_148994', 'prefix:', '')
(' syn::', 'DAL neuron')
('name::', 'Larval dorsomedial neurosecretory cell', 'id:', 'nlx_148995', 'prefix:', '')
(' syn::', 'MNC')
('name::', 'Hippocampus CA1 ivy neuron', 'id:', 'nlx_35220', 'prefix:', '')
(' syn::', 'CA1 ivy cell')
(' syn::', 'ivy cell')
('name::', 'Vestibular type 2 hair cell', 'id:', 'nlx_151801', 'prefix:', '')
('name::', 'Larval olfactory receptor neuron Or1a', 'id:', 'nlx_148725', 'prefix:', '')
(' syn::', 'ORN (Or1a)')
('name::', 'Cochlear nucleus (ventral) octopus cell', 'id:', 'nifext_72', 'prefix:', '')
(' syn::', 'Ventral cochlear nucleus octopus cell')
(' syn::', 'octopus cell')
('name::', 'Larval olfactory receptor neuron Or22c', 'id:', 'nlx_148727', 'prefix:', '')
(' syn::', 'ORN (Or22c)')
('name::', 'Larval olfactory receptor neuron Or13a', 'id:', 'nlx_148726', 'prefix:', '')
(' syn::', 'ORN (Or13a)')
('name::', 'Campaniform sensillum L3-1 of wing vein L3 neuron', 'id:', 'nlx_148488', 'prefix:', '')
('name::', 'Campaniform sensillum L3-2 of wing vein L3 neuron', 'id:', 'nlx_148489', 'prefix:', '')
('name::', 'Cochlear nucleus (dorsal) giant cell', 'id:', 'nifext_75', 'prefix:', '')
(' syn::', 'None')
('name::', 'Cochlear nucleus (dorsal) pyramidal neuron', 'id:', 'nifext_74', 'prefix:', '')
(' syn::', 'fusiform cell')
(' syn::', 'dorsal cochlear nucleus pyramidal cell')
('name::', 'Dorsal humeral crossvein campaniform sensillum neuron', 'id:', 'nlx_148484', 'prefix:', '')
('name::', 'Cerebellum nucleus reciprocal projections neuron', 'id:', 'BAMSC1042', 'prefix:', '')
(' syn::', 'reciprocal projections neuron')
(' syn::', 'cerebellar nuclei')
('name::', 'Superior colliculus type III ganglion cell', 'id:', 'BAMSC1128', 'prefix:', '')
(' syn::', 'type III ganglion cell')
('name::', 'Larval olfactory receptor neuron Or30a', 'id:', 'nlx_148729', 'prefix:', '')
(' syn::', 'ORN (Or30a)')
('name::', 'Larval olfactory receptor neuron Or24a', 'id:', 'nlx_148728', 'prefix:', '')
(' syn::', 'ORN (Or24a)')
('name::', 'Anterior crossvein campaniform sensillum neuron', 'id:', 'nlx_148482', 'prefix:', '')
(' syn::', 'sensillum campaniformium of anterior crossvein neuron')
('name::', 'E-1 neuron', 'id:', 'nlx_148483', 'prefix:', '')
('name::', 'Dentate gyrus IS-I cell', 'id:', 'nlx_cell_091203', 'prefix:', '')
(' syn::', 'DG Interneuron-specific cell')
('name::', 'Olfactory bulb (main) periglomerular cell', 'id:', 'nlx_cell_091202', 'prefix:', '')
(' syn::', 'Periglomerular neuron')
(' syn::', 'Olfactory bulb periglomerular cell')
('name::', 'Dentate gyrus HIPP cell', 'id:', 'nlx_cell_091201', 'prefix:', '')
('name::', 'SOG ventral unpaired median neuron', 'id:', 'nlx_148967', 'prefix:', '')
(' syn::', 'SOG VUM neuron')
('name::', 'Hippocampus CA2 basket cell broad', 'id:', 'nlx_cell_091207', 'prefix:', '')
(' syn::', 'CA2 basket cell')
('name::', 'Hippocampus CA1 oriens lacunosum moleculare neuron', 'id:', 'nlx_cell_091206', 'prefix:', '')
(' syn::', 'CA1 O-LM interneuron')
('name::', 'Hippocampus CA1 basket cell', 'id:', 'nlx_cell_091205', 'prefix:', '')
(' syn::', 'Hippocampal CA1 basket cell')
('name::', 'Hippocampus CA1 IS-I neuron', 'id:', 'nlx_cell_100209', 'prefix:', '')
(' syn::', 'CA1 IS-I cell')
('name::', 'Spinal cord ventral horn interneuron V1', 'id:', 'nlx_cell_100206', 'prefix:', '')
(' syn::', 'V1 interneuron')
('name::', 'Spinal cord ventral horn interneuron V2', 'id:', 'nlx_cell_100207', 'prefix:', '')
(' syn::', 'V2 interneuron')
('name::', 'Hippocampus CA2 bistratified cell broad', 'id:', 'nlx_cell_091209', 'prefix:', '')
(' syn::', 'CA2 bistratified cell')
('name::', 'Hippocampus CA2 basket cell narrow', 'id:', 'nlx_cell_091208', 'prefix:', '')
(' syn::', 'CA2 basket cell')
('name::', 'Dentate gyrus basket cell', 'id:', 'nlx_cell_100201', 'prefix:', '')
(' syn::', 'pyramidal basket cell')
('name::', 'Taste bud type 2 cell', 'id:', 'nifext_99', 'prefix:', '')
('name::', 'Taste bud type 1 cell', 'id:', 'nifext_98', 'prefix:', '')
('name::', 'Subiculum pyramidal cell', 'id:', 'nifext_159', 'prefix:', '')
(' syn::', 'Subiculum pyramidal neuron')
('name::', 'DRG IA cell', 'id:', 'nifext_91', 'prefix:', '')
(' syn::', 'IA ganglion cell')
('name::', 'Dopaminergic neuron (FBbt Term)', 'id:', 'nlx_147835', 'prefix:', '')
(' syn::', 'DA neuron')
('name::', 'Dorso-lateral dopaminergic neuron', 'id:', 'nlx_147836', 'prefix:', '')
(' syn::', 'dorso-lateral dopamine neuron')
('name::', 'DRG IB cell', 'id:', 'nifext_92', 'prefix:', '')
(' syn::', 'IB ganglion cell')
('name::', 'Interneuron (FBbt Term)', 'id:', 'nlx_147830', 'prefix:', '')
('name::', 'Globus pallidus intrinsic cell', 'id:', 'nifext_150', 'prefix:', '')
('name::', 'Dentate gyrus granule cell', 'id:', 'nifext_153', 'prefix:', '')
(' syn::', 'Dentate gyrus granule neuron')
(' syn::', 'Granule cell of dentate gyrus')
(' syn::', 'Dentate granule cell')
(' syn::', 'DG granule cell')
('name::', 'Amygdala basolateral nuclear complex pyramidal neuron', 'id:', 'nifext_152', 'prefix:', '')
(' syn::', 'Pyramidal cell basolateral amygdalar nucleus')
(' syn::', 'Amygdala basolateral nucleus pyramidal neuron')
('name::', 'Intrinsic pb neuron', 'id:', 'nlx_147400', 'prefix:', '')
('name::', 'Thalamus medial geniculate nucleus interneuron small', 'id:', 'nlx_12926', 'prefix:', '')
(' syn::', 'medial geniculate Golgi IIa cell')
(' syn::', 'medial geniculate small interneuron')
('name::', 'Photoreceptor cell (FBbt Term)', 'id:', 'nlx_147815', 'prefix:', '')
('name::', 'Ciliary ganglion cell', 'id:', 'sao1366775348', 'prefix:', '')
(' syn::', 'Ciliary ganglion neuron')
('name::', 'Metathoracic ventral thoracic neurosecretory neuron', 'id:', 'nlx_147793', 'prefix:', '')
('name::', 'Olfactory tubercle Islets of Calleja spiny granule neuron', 'id:', 'nlx_29378', 'prefix:', '')
(' syn::', 'Island of Calleja spiny granule neuron')
('name::', 'Amygdala basolateral nuclear complex nonpyramidal PV basket cell', 'id:', 'nlx_149090', 'prefix:', '')
('name::', 'Amygdala basolateral nuclear complex nonpyramidal PV chandelier cell', 'id:', 'nlx_149091', 'prefix:', '')
(' syn::', 'axo-axonic interneuron')
('name::', 'Amygdala basolateral nuclear complex nonpyramidal SOM neuron', 'id:', 'nlx_149093', 'prefix:', '')
('name::', 'Amygdala lateral central nucleus medium spiny neuron', 'id:', 'nlx_149094', 'prefix:', '')
('name::', 'Amygdala intercalated nuclei small spiny neuron', 'id:', 'nlx_149095', 'prefix:', '')
(' syn::', 'paracapsular intercalated cell (ITC)')
('name::', 'Des3+1+1 neuron', 'id:', 'nlx_146729', 'prefix:', '')
('name::', 'Des3+1 neuron', 'id:', 'nlx_146728', 'prefix:', '')
('name::', 'Des3 neuron', 'id:', 'nlx_146727', 'prefix:', '')
('name::', 'Des1 neuron', 'id:', 'nlx_146725', 'prefix:', '')
('name::', 'Desn neuron', 'id:', 'nlx_146724', 'prefix:', '')
('name::', 'DesE neuron', 'id:', 'nlx_146723', 'prefix:', '')
('name::', 'Bipolar neuron of Bolwig nerve', 'id:', 'nlx_146689', 'prefix:', '')
(' syn::', "bipolar neuron of Bolwig''s nerve")
('name::', 'DesC neuron', 'id:', 'nlx_146721', 'prefix:', '')
('name::', 'DesB neuron', 'id:', 'nlx_146720', 'prefix:', '')
('name::', 'Dentate gyrus hilar cell', 'id:', 'nlx_cell_20090727', 'prefix:', '')
('name::', 'Zone D Johnston organ neuron', 'id:', 'nlx_148439', 'prefix:', '')
(' syn::', 'zone D JON')
('name::', 'DRG pain cell', 'id:', 'nifext_89', 'prefix:', '')
(' syn::', 'DRG pain cell')
('name::', 'SP3 neuron', 'id:', 'nlx_149074', 'prefix:', '')
('name::', 'Cerebellum Purkinje cell', 'id:', 'sao471801888', 'prefix:', '')
(' syn::', 'Purkinje neuron')
(' syn::', "Purkinje's corpuscles")
(' syn::', 'Cerebellar Purkinje neuron')
(' syn::', 'Purkinje Cell')
(' syn::', 'Purkyne cell')
(' syn::', 'Corpuscles of Purkinje')
(' syn::', 'cerebellar purkinje cell')
('name::', 'Stomatogastric ganglion lateral pyloric neuron', 'id:', 'nlx_152046', 'prefix:', '')
('name::', 'U4 neuron', 'id:', 'nlx_147925', 'prefix:', '')
('name::', 'Olfactory bulb (accessory) mitral cell', 'id:', 'nlx_cell_20090304', 'prefix:', '')
(' syn::', 'Mitral cell of the accessory olfactory bulb')
(' syn::', 'accessory olfactory bulb mitral cell')
('name::', 'Sensory neuron (FBbt Term)', 'id:', 'nlx_147829', 'prefix:', '')
('name::', 'Hippocampus CA1 LM(R) PP neuron', 'id:', 'nlx_81310', 'prefix:', '')
(' syn::', 'CA1 lacunosum-moleculare radiatum perforant path associated cell')
(' syn::', 'CA1 LM/R PP cell')
(' syn::', 'CA1 LM PP cell')
('name::', 'Neocortex bipolar cell', 'id:', 'nifext_81', 'prefix:', '')
(' syn::', 'Bipolar dendrite cell')
(' syn::', 'Cortical bipolar cell')
('name::', 'Giant sensillum of the dorsal radius neuron', 'id:', 'nlx_148478', 'prefix:', '')
('name::', 'Rh6 photoreceptor of Bolwig organ', 'id:', 'nlx_148474', 'prefix:', '')
(' syn::', "Rh6 photoreceptor of Bolwig''s organ")
('name::', 'Twin sensillum of margin 2 neuron', 'id:', 'nlx_148477', 'prefix:', '')
('name::', 'Twin sensillum of margin 1 neuron', 'id:', 'nlx_148476', 'prefix:', '')
('name::', 'Mushroom body calyx arborizing neuron 1', 'id:', 'nlx_148574', 'prefix:', '')
(' syn::', 'MB-C1')
('name::', 'Mushroom body extrinsic neuron', 'id:', 'nlx_148575', 'prefix:', '')
('name::', 'Mushroom body calyx arborizing neuron 2', 'id:', 'nlx_148576', 'prefix:', '')
(' syn::', 'MB-C2')
('name::', 'Mushroom body medial lobe arborizing neuron 1', 'id:', 'nlx_148577', 'prefix:', '')
(' syn::', 'MB-M1')
('name::', 'Mushroom body anterior inferior medial cell', 'id:', 'nlx_148571', 'prefix:', '')
(' syn::', 'MB-AIM')
('name::', 'Adult tritocerebral TC1 tachykinin neuron', 'id:', 'nlx_149009', 'prefix:', '')
(' syn::', 'tritocerebral neuron TC1')
('name::', 'Horizontal fiber system neuron pb1', 'id:', 'nlx_148249', 'prefix:', '')
('name::', 'Horizontal fiber system neuron pb4', 'id:', 'nlx_148246', 'prefix:', '')
('name::', 'Horizontal fiber system neuron pb3', 'id:', 'nlx_148247', 'prefix:', '')
('name::', 'Horizontal fiber system neuron pb6', 'id:', 'nlx_148244', 'prefix:', '')
('name::', 'Horizontal fiber system neuron pb5', 'id:', 'nlx_148245', 'prefix:', '')
('name::', 'Horizontal fiber system neuron pb8', 'id:', 'nlx_148242', 'prefix:', '')
('name::', 'Horizontal fiber system neuron pb7', 'id:', 'nlx_148243', 'prefix:', '')
('name::', 'Pupal antennal lobes tachykinin neuron', 'id:', 'nlx_149001', 'prefix:', '')
(' syn::', 'pupal LPP2 neuron')
('name::', 'Vertical fiber system neuron pb1', 'id:', 'nlx_148241', 'prefix:', '')
('name::', 'Entorhinal cortex layer 2 stellate neuron', 'id:', 'nlx_36209', 'prefix:', '')
('name::', 'Abdominal 9 sensory neuron', 'id:', 'nlx_147332', 'prefix:', '')
('name::', 'Abdominal 10 sensory neuron', 'id:', 'nlx_147337', 'prefix:', '')
('name::', 'Octopaminergic neuron', 'id:', 'nlx_148080', 'prefix:', '')
('name::', 'Histaminergic neuron', 'id:', 'nlx_148083', 'prefix:', '')
('name::', 'Aminergic neuron', 'id:', 'nlx_148084', 'prefix:', '')
('name::', 'Adult deuterocerebrum DC tachykinin neuron', 'id:', 'nlx_149005', 'prefix:', '')
(' syn::', 'adult TC1 neuron')
('name::', 'Neuron of aristal sensillum', 'id:', 'nlx_147813', 'prefix:', '')
('name::', 'Spinal cord ventral horn interneuron V0G', 'id:', 'nlx_cell_1006033', 'prefix:', '')
(' syn::', 'V0G interneuron')
(' syn::', 'spinal cord V0G interneuron')
('name::', 'Neostriatum cholinergic cell', 'id:', 'sao1866881837', 'prefix:', '')
(' syn::', 'Giant cholinergic interneuron')
(' syn::', 'Striatal cholinergic interneuron')
(' syn::', 'large striatal aspiny neuron')
(' syn::', 'cholinergic striatal neuron')
(' syn::', 'Neostriatum cholinergic interneuron')
(' syn::', 'Neostriatum giant cell of Kolliker')
(' syn::', 'Neostriatal cholinergic interneuron')
(' syn::', 'Aspiny type 1 neuron')
('name::', 'Dorsal spinocerebellar tract cell', 'id:', 'nlx_143534,nifext_102', 'prefix:', '')
('name::', 'W cell', 'id:', 'nlx_148451', 'prefix:', '')
('name::', 'Neocortex primary visual area pyramidal layer 2-3 cell', 'id:', 'nlx_152226', 'prefix:', '')
('name::', 'Olfactory cortex superficial pyramidal cell', 'id:', 'nlx_153867', 'prefix:', '')
(' syn::', 'Small pyramidal neuron')
(' syn::', 'Olfactory cortex pyramidal neuron')
('name::', 'Vertical fiber system neuron pb6', 'id:', 'nlx_148236', 'prefix:', '')
('name::', 'Thermosensory neuron', 'id:', 'nlx_147905', 'prefix:', '')
('name::', 'Mechanosensory neuron', 'id:', 'nlx_147906', 'prefix:', '')
('name::', 'Chemosensory neuron', 'id:', 'nlx_147907', 'prefix:', '')
('name::', 'Hygrosensitive neuron', 'id:', 'nlx_147908', 'prefix:', '')
('name::', 'Olfactory receptor neuron (FBbt Term)', 'id:', 'nlx_147909', 'prefix:', '')
(' syn::', 'ORN')
('name::', 'Vertical fiber system neuron pb8', 'id:', 'nlx_148234', 'prefix:', '')
('name::', 'Neocortex primary motor area pyramidal layer 5 corticostriate cell', 'id:', 'nlx_152140', 'prefix:', '')
(' syn::', 'Cortico-striate cell')
('name::', 'VesE neuron', 'id:', 'nlx_146763', 'prefix:', '')
('name::', 'Type D interneuron', 'id:', 'nlx_147751', 'prefix:', '')
('name::', 'Type C interneuron', 'id:', 'nlx_147750', 'prefix:', '')
('name::', 'Large field neuron of the central complex', 'id:', 'nlx_148190', 'prefix:', '')
('name::', 'Adult labial motor neuron', 'id:', 'nlx_147752', 'prefix:', '')
('name::', 'LNd neuron', 'id:', 'nlx_147755', 'prefix:', '')
(' syn::', 'LNd')
('name::', 'LN period neuron', 'id:', 'nlx_147754', 'prefix:', '')
('name::', 'LNv neuron', 'id:', 'nlx_147756', 'prefix:', '')
('name::', 'Ventral cibarial sense organ neuron of middle sensillum', 'id:', 'nlx_148511', 'prefix:', '')
('name::', 'Unilateral intrinsic neuron', 'id:', 'nlx_147699', 'prefix:', '')
(' syn::', 'ipsilateral local interneuron')
('name::', 'Retina medium simple ganglion cell', 'id:', 'nifext_20', 'prefix:', '')
(' syn::', 'Medium simple ganglion cell')
(' syn::', 'Retina ganglion cell medium simple')
('name::', 'Retina small complex ganglion cell', 'id:', 'nifext_21', 'prefix:', '')
(' syn::', 'Small complex ganglion cell')
(' syn::', 'Retina ganglion cell small complex')
('name::', 'Retina small simple ganglion cell', 'id:', 'nifext_22', 'prefix:', '')
(' syn::', 'Small simple ganglion cell')
(' syn::', 'Retina ganglion cell small simple')
('name::', 'Spinal cord motor neuron parasympathetic', 'id:', 'nlx_38713', 'prefix:', '')
('name::', 'Retina photoreceptor M cone cell', 'id:', 'nifext_27', 'prefix:', '')
(' syn::', 'M-cone cell')
(' syn::', 'Retina photoreceptor cone M')
('name::', 'Retina wide-field bistratified amacrine cell', 'id:', 'BAMSC1071', 'prefix:', '')
(' syn::', 'wide-field bistratified amacrine cell')
('name::', 'Retina narrow-field bistratified amacrine cell', 'id:', 'BAMSC1070', 'prefix:', '')
(' syn::', 'narrow-field bistratified amacrine cell')
('name::', 'Dorsal root ganglion C nociceptive neuron', 'id:', 'nlx_152096', 'prefix:', '')
('name::', 'Dorsal root ganglion A delta nociceptive neuron', 'id:', 'nlx_152097', 'prefix:', '')
('name::', 'Dorsal root ganglion A alpha-beta nociceptive neuron', 'id:', 'nlx_152098', 'prefix:', '')
('name::', 'Dorsal root ganglion A delta non-nociceptive neuron', 'id:', 'nlx_152099', 'prefix:', '')
('name::', 'Gigantocellular nucleus giant neuron', 'id:', 'nlx_48604', 'prefix:', '')
('name::', 'Tuberomammillary nucleus medium histamine neuron', 'id:', 'nlx_60485', 'prefix:', '')
('name::', 'Pupal Pdf neuron close to tritocerebrum', 'id:', 'nlx_148526', 'prefix:', '')
('name::', 'Cerebellum Golgi cell', 'id:', 'sao1415726815', 'prefix:', '')
(' syn::', 'Cerebellar Golgi neuron')
(' syn::', 'Cerebellar golgi cell')
('name::', 'Neocortex primary visual layer 5 corticopontine/tectal pyramidal cell', 'id:', 'nlx_143938', 'prefix:', '')
('name::', 'Neocortex Dorsolateral prefrontal area layer 2 Calbindin cell', 'id:', 'nlx_156739', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Olfactory bulb (main) tufted cell (middle)', 'id:', 'nifext_121', 'prefix:', '')
(' syn::', 'Olfactory bulb (main) tufted cell (middle)')
('name::', 'Olfactory bulb (accessory) glomerular layer cell', 'id:', 'nifext_122', 'prefix:', '')
(' syn::', 'Glomerular layer cell')
(' syn::', 'periglomerular cell')
('name::', 'Olfactory bulb (main) granule cell', 'id:', 'nifext_123', 'prefix:', '')
(' syn::', 'Granule cell of olfactory bulb')
(' syn::', 'Olfactory granule neuron')
('name::', 'IP neuron', 'id:', 'nlx_146579', 'prefix:', '')
('name::', 'Cerebellum granule cell', 'id:', 'nifext_128', 'prefix:', '')
(' syn::', 'Cerebellar granule neuron')
(' syn::', 'Cerebellar granule cell')
('name::', 'Peripherally synapsing interneuron', 'id:', 'nlx_148109', 'prefix:', '')
('name::', 'Great commissural interneuron', 'id:', 'nlx_148108', 'prefix:', '')
('name::', 'Nucleus ambiguus motor neuron', 'id:', 'nlx_53276', 'prefix:', '')
('name::', 'Type B lLN', 'id:', 'nlx_148101', 'prefix:', '')
('name::', 'Type A lLN', 'id:', 'nlx_148100', 'prefix:', '')
('name::', 'Oligo-glomerular lLN', 'id:', 'nlx_148105', 'prefix:', '')
('name::', 'Tergotrochanteral muscle motor neuron', 'id:', 'nlx_148107', 'prefix:', '')
(' syn::', 'TTMn')
('name::', 'Leucokinin neuron', 'id:', 'nlx_148992', 'prefix:', '')
(' syn::', 'LK neuron')
('name::', 'Metathoracic posterior fascicle neuron', 'id:', 'nlx_146879', 'prefix:', '')
('name::', 'Pupal Pdf negative s-LNv neuron', 'id:', 'nlx_148530', 'prefix:', '')
('name::', 'Small adult Pdf neuron of abdominal segment', 'id:', 'nlx_148533', 'prefix:', '')
('name::', 'Large adult Pdf neuron of abdominal neuromere', 'id:', 'nlx_148534', 'prefix:', '')
('name::', 'Pupal LN period neuron', 'id:', 'nlx_148535', 'prefix:', '')
('name::', 'Pupal DN period neuron', 'id:', 'nlx_148536', 'prefix:', '')
('name::', 'Pupal DN1 period neuron', 'id:', 'nlx_148537', 'prefix:', '')
('name::', 'Pupal DN2 period neuron', 'id:', 'nlx_148538', 'prefix:', '')
('name::', 'Pupal DN3 period neuron', 'id:', 'nlx_148539', 'prefix:', '')
('name::', 'Ventral humeral crossvein campaniform sensillum neuron', 'id:', 'nlx_148486', 'prefix:', '')
('name::', 'Pdf neuron close to tritocerebrum', 'id:', 'nlx_147485', 'prefix:', '')
('name::', 'A7 neuron', 'id:', 'nlx_146714', 'prefix:', '')
('name::', 'A8 neuron', 'id:', 'nlx_146715', 'prefix:', '')
('name::', 'A5 neuron', 'id:', 'nlx_146712', 'prefix:', '')
('name::', 'A6 neuron', 'id:', 'nlx_146713', 'prefix:', '')
('name::', 'A3 neuron', 'id:', 'nlx_146710', 'prefix:', '')
('name::', 'A4 neuron', 'id:', 'nlx_146711', 'prefix:', '')
('name::', 'Pb-no neuron', 'id:', 'nlx_147377', 'prefix:', '')
(' syn::', 'CCI (pb-no1)')
('name::', 'Fb-ltr neuron', 'id:', 'nlx_147376', 'prefix:', '')
('name::', 'Fb-eb-no neuron', 'id:', 'nlx_147375', 'prefix:', '')
('name::', 'Fb-eb neuron', 'id:', 'nlx_147374', 'prefix:', '')
('name::', 'Fb-no neuron', 'id:', 'nlx_147373', 'prefix:', '')
(' syn::', 'CCI (fb-no)')
('name::', 'Eb-no neuron', 'id:', 'nlx_147372', 'prefix:', '')
(' syn::', 'CCI (no-eb1)')
('name::', 'Anterior fascicle sensory neuron', 'id:', 'nlx_146718', 'prefix:', '')
('name::', 'DesA neuron', 'id:', 'nlx_146719', 'prefix:', '')
('name::', 'Rhabdomeric photoreceptor cell', 'id:', 'nlx_148044', 'prefix:', '')
('name::', 'Ciliated photoreceptor cell', 'id:', 'nlx_148045', 'prefix:', '')
('name::', 'Photoreceptor cell of Bolwig organ', 'id:', 'nlx_148046', 'prefix:', '')
(' syn::', "photoreceptor cell of Bolwig''s organ")
('name::', 'Cerebellum basket cell', 'id:', 'sao666951243', 'prefix:', '')
(' syn::', 'Cerebellar basket cell')
('name::', 'GABAergic neuron (FBbt Term)', 'id:', 'nlx_148043', 'prefix:', '')
(' syn::', 'GABA-ergic neuron')
('name::', 'Abdominal neuron', 'id:', 'nlx_146707', 'prefix:', '')
('name::', 'Posterior fascicle sensory neuron', 'id:', 'nlx_146756', 'prefix:', '')
('name::', 'Pb-fb-eb neuron', 'id:', 'nlx_147381', 'prefix:', '')
('name::', 'Inferior olivary nucleus principal neuron', 'id:', 'nlx_151561', 'prefix:', '')
('name::', 'Inferior olivary nucleus interneuron', 'id:', 'nlx_151562', 'prefix:', '')
('name::', 'Antennal lobe (Honey bee) interneuron', 'id:', 'nlx_151565', 'prefix:', '')
(' syn::', 'Antennal lobe local interneuron')
('name::', 'Antennal lobe (Honey bee) principal neuron', 'id:', 'nlx_151564', 'prefix:', '')
(' syn::', 'Antennal lobe principal neuron')
('name::', 'Retina On-Midget Ganglion Cell', 'id:', 'nlx_144271', 'prefix:', '')
(' syn::', 'P-Cell')
(' syn::', 'Retina Ganglion Cell On-Midget')
('name::', 'Retina Giant-Melanopsin Ganglion Cell', 'id:', 'nlx_144277', 'prefix:', '')
(' syn::', 'Retina Ganglion Cell Giant-Melanopsin')
('name::', 'Retina On/Off-Parasol Ganglion Cell', 'id:', 'nlx_144276', 'prefix:', '')
(' syn::', 'M-Cells')
(' syn::', 'Retina Ganglion Cell On/Off-Parasol')
('name::', 'Retina Off-Midget Ganglion Cell', 'id:', 'nlx_144275', 'prefix:', '')
(' syn::', 'P Cell')
(' syn::', 'Retina Ganglion Cell Off-Midget')
('name::', 'Neostriatum Neurogliaform cell', 'id:', 'nlx_149138', 'prefix:', '')
('name::', 'Subthalamic nucleus principal cell', 'id:', 'nlx_149137', 'prefix:', '')
('name::', 'Neostriatum indirect pathway spiny neuron', 'id:', 'nlx_149136', 'prefix:', '')
(' syn::', 'Medium spiny neuron')
(' syn::', 'Neostriatal spiny neuron')
(' syn::', 'Medium-sized spiny neuron')
(' syn::', 'Striatal spiny neuron')
(' syn::', 'Striatal medium spiny neuron')
('name::', 'Neostriatum direct pathway spiny neuron', 'id:', 'nlx_149135', 'prefix:', '')
(' syn::', 'Medium spiny neuron')
(' syn::', 'Neostriatal spiny neuron')
(' syn::', 'Medium-sized spiny neuron')
(' syn::', 'Striatal spiny neuron')
(' syn::', 'Striatal medium spiny neuron')
('name::', 'Substantia nigra pars compacta dopaminergic cell', 'id:', 'nifext_145', 'prefix:', '')
(' syn::', 'substantia nigra dopaminergic cell')
(' syn::', 'Nigral dopaminergic cell')
('name::', 'Spinal cord ventral horn motor neuron alpha', 'id:', 'sao1154704263', 'prefix:', '')
(' syn::', 'alpha motoneuron')
(' syn::', 'lower motor neuron')
(' syn::', 'alpha motor neuron')
('name::', 'Fan-shaped neuron F6', 'id:', 'nlx_148211', 'prefix:', '')
(' syn::', 'fan shaped neuron F6')
('name::', 'Retina medium complex ganglion cell', 'id:', 'nifext_19', 'prefix:', '')
(' syn::', 'Medium complex ganglion cell')
(' syn::', 'Retina ganglion cell medium complex')
('name::', 'Fan-shaped neuron F1', 'id:', 'nlx_148215', 'prefix:', '')
(' syn::', 'fan shaped neuron F1')
('name::', 'Protocerebral bridge lateral neuron PBl', 'id:', 'nlx_148214', 'prefix:', '')
('name::', 'Aplysia buccal 15', 'id:', 'nlx_152508', 'prefix:', '')
('name::', 'Fan-shaped neuron F2', 'id:', 'nlx_148216', 'prefix:', '')
(' syn::', 'fan shaped neuron F2')
('name::', 'Fan-shaped neuron F5', 'id:', 'nlx_148219', 'prefix:', '')
(' syn::', 'fan shaped neuron F5')
('name::', 'Class II dendritic arborizing neuron', 'id:', 'nlx_148057', 'prefix:', '')
(' syn::', 'class II da')
('name::', 'Class I dendritic arborizing neuron', 'id:', 'nlx_148056', 'prefix:', '')
(' syn::', 'class I dendritic arborising neuron')
('name::', 'Neocortex pyramidal cell', 'id:', 'sao2128417084', 'prefix:', '')
(' syn::', 'Neocortical pyramidal cell')
(' syn::', 'Neocortical pyramidal neuron')
(' syn::', 'Cortical pyramidal neuron')
(' syn::', 'neocortex pyramidal neuron')
('name::', 'Cochlear nucleus (dorsal) vertical cell', 'id:', 'nifext_73', 'prefix:', '')
(' syn::', 'tuberculoventral cell')
(' syn::', 'vertical cell')
(' syn::', 'corn cell')
('name::', 'Hippocampus CA1 neurogliaform neuron', 'id:', 'nlx_cell_1006031', 'prefix:', '')
(' syn::', 'CA1 NG cells')
(' syn::', 'NG cells')
('name::', 'Neurosecretory cell', 'id:', 'nlx_147719', 'prefix:', '')
('name::', 'Colliculus superior deep vertical fusiform cell', 'id:', 'BAMSC1122', 'prefix:', '')
(' syn::', 'deep vertical fusiform cell')
('name::', 'Colliculus superior intermediate vertical fusiform cell', 'id:', 'BAMSC1121', 'prefix:', '')
(' syn::', 'intermediate vertical fusiform cell')
('name::', 'Adult olfactory receptor neuron Ir64a', 'id:', 'nlx_148987', 'prefix:', '')
(' syn::', 'Ir64a')
('name::', 'Cochlear nucleus (ventral) globular bushy cell', 'id:', 'nifext_70', 'prefix:', '')
('name::', 'Neocortex primary motor area pyramidal layer 5 corticospinal cell', 'id:', 'nlx_151709', 'prefix:', '')
(' syn::', 'Upper motor neuron')
(' syn::', 'corticospinal neuron')
(' syn::', 'Betz cell')
('name::', 'Neocortex primary motor area stellate layer 4 cell', 'id:', 'nlx_151708', 'prefix:', '')
('name::', 'Superior colliculus type II ganglion cell', 'id:', 'BAMSC1127', 'prefix:', '')
(' syn::', 'type II ganglion cell')
('name::', 'Neocortex primary motor area pyramidal layer 2-3 cell', 'id:', 'nlx_151707', 'prefix:', '')
(' syn::', 'Superficial cortical pyramidal cell')
('name::', 'Hypoglossal nucleus GABA neuron', 'id:', 'nlx_90278', 'prefix:', '')
(' syn::', 'hypoglossal GABA neuron')
('name::', 'Colliculus superior type I ganglion cell', 'id:', 'BAMSC1126', 'prefix:', '')
(' syn::', 'type I ganglion cell')
('name::', 'Vestibular ganglion cell', 'id:', 'nifext_66', 'prefix:', '')
(' syn::', 'Vestibular ganglion neuron')
(' syn::', "Scarpa's ganglion cell")
('name::', 'Campaniform sensillum L3-3 of wing vein L3 neuron', 'id:', 'nlx_148490', 'prefix:', '')
('name::', 'Colliculus superior wide field vertical cell', 'id:', 'BAMSC1125', 'prefix:', '')
(' syn::', 'wide field vertical cell')
('name::', 'Superior colliculus stellate cell of the zone of optic fibers', 'id:', 'BAMSC1132', 'prefix:', '')
(' syn::', 'stellate cell of the zone of optic fibers')
('name::', 'Colliculus superior inverted pyramidal cell', 'id:', 'BAMSC1124', 'prefix:', '')
(' syn::', 'inverted pyramidal cell')
('name::', 'Cochlear nucleus (ventral) multipolar T cell', 'id:', 'nifext_68', 'prefix:', '')
(' syn::', 'T multipolar cell')
(' syn::', 'T stellate cell')
(' syn::', 'type I')
(' syn::', 'chopper')
(' syn::', 'planar multipolar')
('name::', 'Cochlear nucleus (ventral) multipolar D cell', 'id:', 'nifext_69', 'prefix:', '')
(' syn::', 'D multipolar cell')
(' syn::', 'type II (Cant')
(' syn::', '1981)')
(' syn::', 'onset-chopper responses to tones')
(' syn::', 'radial stellate')
(' syn::', 'wide-band inhibitor')
('name::', 'Hippocampus CA3 IS-I cell', 'id:', 'nlx_cell_091210', 'prefix:', '')
(' syn::', 'CA3 Interneuron-specific I cell')
('name::', 'Hippocampus CA3 IS-II cell', 'id:', 'nlx_cell_091211', 'prefix:', '')
(' syn::', 'CA3 interneuron-specific II cell')
('name::', 'Hippocampus CA3 axo-axonic cell', 'id:', 'nlx_cell_091212', 'prefix:', '')
(' syn::', 'CA3 chandelier cell')
('name::', 'Hippocampus CA3 basket cell', 'id:', 'nlx_cell_091213', 'prefix:', '')
(' syn::', 'CA3 pyramidal basket cell')
('name::', 'Hippocampus CA3 lacunosum moleculare neuron', 'id:', 'nlx_cell_091214', 'prefix:', '')
(' syn::', 'CA3 LM interneurons')
('name::', 'Hippocampus CA3 oriens interneuron', 'id:', 'nlx_cell_091215', 'prefix:', '')
(' syn::', 'CA3 SO interneuron')
(' syn::', 'CA3 SO neuron')
(' syn::', 'Hippocampus CA3 stratum oriens interneuron')
(' syn::', 'CA3 stratum oriens interneuron')
(' syn::', 'CA3 s. oriens interneuron')
('name::', 'Hippocampus CA3 oriens lacunosum moleculare neuron', 'id:', 'nlx_cell_091216', 'prefix:', '')
(' syn::', 'OLM cell')
('name::', 'Hippocampus CA3 radiatum neuron', 'id:', 'nlx_cell_091217', 'prefix:', '')
(' syn::', 'CA3 R interneuron')
('name::', 'Hippocampus CA3 spiny CR cell', 'id:', 'nlx_cell_091218', 'prefix:', '')
(' syn::', 'CA3 Spiny CR immunoreactive cell')
(' syn::', 'CA3 Spiny CR-positive interneurons')
('name::', 'Colliculus superior stellate neuron', 'id:', 'BAMSC1129', 'prefix:', '')
(' syn::', 'stellate neuron')
('name::', 'Olfactory bulb main tufted cell external', 'id:', 'nlx_82555', 'prefix:', '')
(' syn::', 'external tufted cell')
(' syn::', 'olfactory bulb external tufted cell')
(' syn::', 'external tufted neuron')
('name::', 'SP1 neuron', 'id:', 'nlx_146437', 'prefix:', '')
('name::', "DRG Meissner's corpuscle cell", 'id:', 'nifext_88', 'prefix:', '')
(' syn::', "Meissner's corpuscle cell")
('name::', 'Colliculus Inferior GABAergic Principal Cell', 'id:', 'nlx_60854', 'prefix:', '')
(' syn::', 'large GABAergic (LG) neurons')
('name::', 'Colliculus inferior principal cell', 'id:', 'nifext_82', 'prefix:', '')
(' syn::', 'Inferior colliculus principal neuron')
('name::', 'Colliculus inferior intrinsic cell', 'id:', 'nifext_83', 'prefix:', '')
(' syn::', 'small GABAergic (SG) neurons')
('name::', 'Neocortex primary motor area pyramidal layer 5 corticopontine-tectal cell', 'id:', 'nlx_152139', 'prefix:', '')
('name::', 'Motor neuron (FBbt Term)', 'id:', 'nlx_147828', 'prefix:', '')
('name::', 'DRG Pacinian corpuscle cell', 'id:', 'nifext_86', 'prefix:', '')
('name::', 'DRG Merckel disc cell', 'id:', 'nifext_87', 'prefix:', '')
(' syn::', 'Merckel disc cell')
('name::', 'Dorsal root ganglion A alpha-beta non-nociceptive neuron', 'id:', 'nifext_84', 'prefix:', '')
(' syn::', 'Dorsal root ganglion neuron')
(' syn::', 'Dorsal root ganglion cell')
('name::', 'DRG hair follicle cell', 'id:', 'nifext_85', 'prefix:', '')
(' syn::', 'Hair follicle cell')
('name::', 'Spinal cord dorsal horn substantia gelatinosa islet neuron', 'id:', 'nlx_143973', 'prefix:', '')
(' syn::', 'islet cell')
(' syn::', 'Spinal cord substantia gelatinosa islet cell')
('name::', 'Spinal cord dorsal horn substantia gelatinosa vertical neuron', 'id:', 'nlx_143972', 'prefix:', '')
(' syn::', 'stalked cell')
(' syn::', 'Spinal cord substantia gelatinosa stalked cell')
('name::', 'Olfactory tubercle Islets of Calleja dwarf neuron', 'id:', 'nlx_96825', 'prefix:', '')
('name::', 'Retina ganglion cell B1', 'id:', 'BAMSC1047', 'prefix:', '')
(' syn::', 'retinal ganglion cell B1')
('name::', 'Pb-eb-no neuron', 'id:', 'nlx_147380', 'prefix:', '')
(' syn::', 'CCI (pb-eb-no1)')
('name::', 'Prothoracic gland innervating neuron', 'id:', 'nlx_148148', 'prefix:', '')
('name::', 'Olfactory cortex deep pyramidal cell', 'id:', 'nlx_153868', 'prefix:', '')
(' syn::', 'Small pyramidal neuron')
(' syn::', 'Olfactory cortex pyramidal neuron')
(' syn::', 'piriform cortex deep pyramidal neuron')
('name::', 'Olfactory tubercle Islets of Calleja large hilar cell', 'id:', 'nlx_84634', 'prefix:', '')
(' syn::', 'Olfactory tubercle large hilar neuron')
('name::', 'Retina ganglion cell', 'id:', 'nifext_17', 'prefix:', '')
(' syn::', 'Retinal Ganglion Neuron')
(' syn::', 'Retinal ganglion cell')
('name::', 'Neocortex Dorsolateral Prefrontal Area layer 5 parvalbumin cell', 'id:', 'nlx_157282', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Neocortex Dorsolateral Prefrontal Area layer 6 parvalbumin cell', 'id:', 'nlx_157283', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Neocortex Dorsolateral Prefrontal Area layer 3 parvalbumin cell', 'id:', 'nlx_157280', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Cochlear nucleus (dorsal) stellate cell', 'id:', 'nlx_153843', 'prefix:', '')
('name::', 'Pdf neuron', 'id:', 'nlx_147480', 'prefix:', '')
(' syn::', 'pigment-dispersing hormone-immunoreactive neuron')
('name::', 'Spinal cord ventral horn interneuron V3', 'id:', 'nlx_cell_100208', 'prefix:', '')
(' syn::', 'V3 interneuron')
('name::', 'Dentate gyrus IS-II cell', 'id:', 'nlx_cell_091204', 'prefix:', '')
(' syn::', 'DG Interneruon-specific II cell')
('name::', 'Hypothalamus vasopressin neuroendocrine magnocellular neuron', 'id:', 'nlx_268', 'prefix:', '')
('name::', 'Segmental nerve pioneer neuron', 'id:', 'nlx_146443', 'prefix:', '')
(' syn::', 'SN-pioneer')
('name::', 'Cholinergic neuron (FBbt Term)', 'id:', 'nlx_148005', 'prefix:', '')
('name::', 'Olfactory receptor neuron of dorsal organ', 'id:', 'nlx_148006', 'prefix:', '')
(' syn::', 'DO ORN')
('name::', 'Dentate gyrus trilaminar interneuron', 'id:', 'nlx_cell_100204', 'prefix:', '')
('name::', 'Olfactory bulb (main) Blanes cell', 'id:', 'nifext_124', 'prefix:', '')
(' syn::', 'Blanes Cell')
(' syn::', 'Olfactory bulb (main) deep short axon cell')
(' syn::', 'short axon cell')
('name::', 'Trapezoid body intrinsic cell', 'id:', 'nifext_80', 'prefix:', '')
(' syn::', 'Trapezoid body intrinsic neuron')
('name::', 'Spinal cord ventral horn interneuron V0', 'id:', 'nlx_cell_100205', 'prefix:', '')
(' syn::', 'V0 interneuron')
('name::', 'Neocortex Dorsolateral prefrontal area layer 3 Calbindin cell', 'id:', 'nlx_156749', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Sound activated Johnston organ neuron', 'id:', 'nlx_148421', 'prefix:', '')
(' syn::', "sound activated Johnston''s organ neuron")
('name::', 'Antennal lobe (Manduca) principal neuron', 'id:', 'nlx_151688', 'prefix:', '')
(' syn::', 'uniglomerular projection neuron')
(' syn::', 'medial-antenno-protocerebral-tract projection neuron')
(' syn::', 'inner-antennocerebral-tract projection neuron')
('name::', 'Antennal lobe (Manduca) interneuron', 'id:', 'nlx_151689', 'prefix:', '')
(' syn::', 'multiglomerular local interneuron')
('name::', 'Olfactory bulb (main) mitral cell', 'id:', 'nifext_120', 'prefix:', '')
(' syn::', 'Mitral neuron')
('name::', 'Mushroom body (Honey bee) Kenyon cell', 'id:', 'nlx_151687', 'prefix:', '')
(' syn::', 'mushroom body intrinsic neuron')
('name::', 'Mesothoracic posterior fascicle neuron', 'id:', 'nlx_146841', 'prefix:', '')
('name::', 'Zone E Johnston organ neuron', 'id:', 'nlx_148440', 'prefix:', '')
(' syn::', 'zone E JON')
('name::', 'Dopaminergic PPL2c neuron', 'id:', 'nlx_148569', 'prefix:', '')
(' syn::', 'PPL2c')
('name::', 'Dopaminergic PPL2ab neuron', 'id:', 'nlx_148568', 'prefix:', '')
(' syn::', 'PPL2ab')
('name::', 'Dopaminergic PAL neuron', 'id:', 'nlx_148563', 'prefix:', '')
(' syn::', 'PAL')
('name::', 'Dopaminergic PAM neuron', 'id:', 'nlx_148562', 'prefix:', '')
(' syn::', 'PAM')
('name::', 'Dopaminergic PPL1 neuron', 'id:', 'nlx_148567', 'prefix:', '')
(' syn::', 'PPL1')
('name::', 'Dopaminergic PPM3 neuron', 'id:', 'nlx_148566', 'prefix:', '')
(' syn::', 'PPM3')
('name::', 'Dopaminergic PPM2 neuron', 'id:', 'nlx_148565', 'prefix:', '')
(' syn::', 'PPM2')
('name::', 'Dopaminergic PPM1 neuron', 'id:', 'nlx_148564', 'prefix:', '')
(' syn::', 'PPM1')
('name::', 'SpB neuron', 'id:', 'nlx_146741', 'prefix:', '')
('name::', 'Hippocampus CA1 stratum oriens neuron', 'id:', 'nlx_cell_090807', 'prefix:', '')
(' syn::', 'vertical cells (Lacaille and williams')
(' syn::', '1990)')
('name::', 'SpD neuron', 'id:', 'nlx_146743', 'prefix:', '')
('name::', 'SpC neuron', 'id:', 'nlx_146742', 'prefix:', '')
('name::', 'Zone B Johnston organ neuron', 'id:', 'nlx_148428', 'prefix:', '')
(' syn::', 'zone B JON')
('name::', 'Olfactory cortex multipolar cell', 'id:', 'nlx_cell_091001', 'prefix:', '')
(' syn::', 'Olfactory cortex large multipolar neuron')
(' syn::', 'Olfactory cortex large multipolar cell')
('name::', 'Olfactory cortex small globular cell', 'id:', 'nlx_cell_091002', 'prefix:', '')
('name::', 'Olfactory cortex semilunar cell', 'id:', 'nlx_cell_091005', 'prefix:', '')
(' syn::', 'semilunar cell')
(' syn::', 'semilunar neuron')
('name::', 'Hippocampus CA2 bistratified cell narrow', 'id:', 'nlx_cell_091004', 'prefix:', '')
(' syn::', 'CA2 bistratified cell')
('name::', 'LLN', 'id:', 'nlx_148099', 'prefix:', '')
('name::', 'VLN', 'id:', 'nlx_148098', 'prefix:', '')
('name::', 'Projection neuron (FBbt Term)', 'id:', 'nlx_148097', 'prefix:', '')
('name::', 'Local interneuron of adult antennal lobe', 'id:', 'nlx_148095', 'prefix:', '')
(' syn::', 'LI')
('name::', 'Embryonic / larval olfactory receptor neuron', 'id:', 'nlx_148093', 'prefix:', '')
(' syn::', 'larval ORN')
('name::', 'Ventral sensillum of wing vein 3 neuron', 'id:', 'nlx_148487', 'prefix:', '')
('name::', 'Adult olfactory receptor neuron', 'id:', 'nlx_148091', 'prefix:', '')
(' syn::', 'adult odorant receptor neuron')
('name::', 'Neurosecretory neuron', 'id:', 'nlx_147834', 'prefix:', '')
('name::', 'DRG temperature cell', 'id:', 'nifext_90', 'prefix:', '')
(' syn::', 'Temperature cell')
('name::', 'Intrinsic neuron', 'id:', 'nlx_cell_1003113', 'prefix:', '')
(' syn::', 'local circuit neuron')
(' syn::', 'interneuron')
('name::', 'Olfactory tubercle Islets of Calleja large Type 2 hilar cell', 'id:', 'nlx_19563', 'prefix:', '')
('name::', 'Serotonergic neuron (FBbt Term)', 'id:', 'nlx_147837', 'prefix:', '')
(' syn::', 'serotonin neuron')
('name::', 'Neocortex stellate smooth cell', 'id:', 'sao770302354', 'prefix:', '')
(' syn::', 'Cortical Smooth Stellate Cell')
('name::', 'Gracilis nucleus intrinsic cell', 'id:', 'nifext_95', 'prefix:', '')
('name::', 'Gracilis nucleus principal cell', 'id:', 'nifext_94', 'prefix:', '')
('name::', 'Mushroom body ventral lobe arborizing neuron 3', 'id:', 'nlx_148586', 'prefix:', '')
(' syn::', 'MB-V3')
('name::', 'Pioneer neuron', 'id:', 'nlx_147832', 'prefix:', '')
('name::', 'Mushroom body alpha / beta neuron', 'id:', 'nlx_148596', 'prefix:', '')
(' syn::', 'alpha / beta Kenyon cell')
('name::', "Mushroom body alpha' / beta' neuron", 'id:', 'nlx_148597', 'prefix:', '')
(' syn::', "mushroom body alpha'' / beta'' Kenyon cell")
('name::', 'Mushroom body pedunculus-medial lobe and vertical lobe arborizing neuron 2', 'id:', 'nlx_148594', 'prefix:', '')
(' syn::', 'MB-MVP2')
('name::', 'Mushroom body gamma neuron', 'id:', 'nlx_148595', 'prefix:', '')
(' syn::', 'gamma Kenyon cell')
('name::', 'Mushroom body pedunculus-vertical lobe arborizing neuron 1', 'id:', 'nlx_148592', 'prefix:', '')
(' syn::', 'MB-VP1')
('name::', 'Mushroom body pedunculus-medial lobe and vertical lobe arborizing neuron 1', 'id:', 'nlx_148593', 'prefix:', '')
(' syn::', 'MB-MVP1')
('name::', 'Mushroom body medial-vertical lobe arborizing neuron 2', 'id:', 'nlx_148590', 'prefix:', '')
(' syn::', 'MB-MV2')
('name::', 'Mushroom body pedunculus-medial lobe arborizing neuron 1', 'id:', 'nlx_148591', 'prefix:', '')
(' syn::', 'MB-MP1')
('name::', 'Adult dorsomedial neurosecretory cell', 'id:', 'nlx_149065', 'prefix:', '')
(' syn::', 'MNC')
('name::', 'Dopaminergic dorso-lateral neuron', 'id:', 'nlx_148953', 'prefix:', '')
('name::', 'Median fan-shaped neuron Fm2', 'id:', 'nlx_148187', 'prefix:', '')
('name::', 'Gustatory receptor neuron', 'id:', 'nlx_147910', 'prefix:', '')
(' syn::', 'GRN')
('name::', 'Dentate gyrus HICAP cell', 'id:', 'nlx_32288', 'prefix:', '')
(' syn::', 'Hilar cell')
(' syn::', 'Hilar neuron')
('name::', 'Hippocampus CA1 lacunosum moleculare neuron', 'id:', 'nlx_92500', 'prefix:', '')
(' syn::', 'CA1 LM neuron')
('name::', 'Bed nucleus of the stria terminalis beaded neuron', 'id:', 'BAMSC995', 'prefix:', '')
(' syn::', 'BNST beaded cell')
(' syn::', 'BNST beaded neuron')
('name::', 'Bed nucleus of the stria terminalis superficial spiny neuron', 'id:', 'BAMSC990', 'prefix:', '')
(' syn::', 'superficial spiny cell')
(' syn::', 'BNST superficial spiny neuron')
('name::', 'Bed nucleus of the stria terminalis common spiny neuron', 'id:', 'BAMSC991', 'prefix:', '')
(' syn::', 'common spiny cell')
(' syn::', 'BNST common spiny neuron')
('name::', 'Aplysia buccal 4', 'id:', 'nlx_152070', 'prefix:', '')
(' syn::', 'Aplysia buccal 5')
('name::', 'Bed nucleus of the stria terminalis dense axon plexus-forming neuron', 'id:', 'BAMSC993', 'prefix:', '')
(' syn::', 'beaded cell')
(' syn::', 'BNST dense axon plexus-forming neuron')
('name::', 'Tritonia dorsal swim interneuron', 'id:', 'Tri0001043', 'prefix:', '')
(' syn::', 'Cerebral Serotonergic Posterior Neuron')
(' syn::', 'Dorsal swim interneuron')
(' syn::', 'DSI')
('name::', 'Dentate gyrus axo-axonic cell', 'id:', 'nlx_54328', 'prefix:', '')
(' syn::', 'DG Chandelier cell')
('name::', 'Pdf neuron close to calyx', 'id:', 'nlx_147484', 'prefix:', '')
('name::', 'Spinal cord dorsal horn layer III-V interneuron', 'id:', 'nlx_151678', 'prefix:', '')
('name::', 'Dentate gyrus MOPP cell', 'id:', 'nlx_47009', 'prefix:', '')
('name::', 'Median fan-shaped neuron Fm1', 'id:', 'nlx_148186', 'prefix:', '')
('name::', 'Small field neuron of the central complex', 'id:', 'nlx_148189', 'prefix:', '')
(' syn::', 'columnar neuron of central complex')
('name::', 'Median fan-shaped neuron Fm3', 'id:', 'nlx_148188', 'prefix:', '')
('name::', 'Spinal cord dorsal horn layer III-V projection neuron', 'id:', 'nlx_151677', 'prefix:', '')
('name::', 'Spinal cord dorsal horn marginal neuron', 'id:', 'nlx_151676', 'prefix:', '')
('name::', 'Prothoracic ventral neurosecretory neuron', 'id:', 'nlx_147768', 'prefix:', '')
('name::', 'Larval olfactory receptor neuron Or83a', 'id:', 'nlx_148743', 'prefix:', '')
(' syn::', 'ORN (Or83a)')
('name::', 'Larval olfactory receptor neuron Or82a', 'id:', 'nlx_148742', 'prefix:', '')
(' syn::', 'ORN (Or82a)')
('name::', 'Larval olfactory receptor neuron Or74a', 'id:', 'nlx_148741', 'prefix:', '')
(' syn::', 'ORN (Or74a)')
('name::', 'Larval olfactory receptor neuron Or67b', 'id:', 'nlx_148740', 'prefix:', '')
(' syn::', 'ORN (Or67b)')
('name::', 'Larval olfactory receptor neuron Or94b', 'id:', 'nlx_148745', 'prefix:', '')
(' syn::', 'ORN (Or94b)')
('name::', 'Hypothalamus oxytocin releasing neuroendocrine magnocellular neuron', 'id:', 'nlx_84773', 'prefix:', '')
('name::', 'Medullary commissural inhibitory neuron', 'id:', 'nlx_152083', 'prefix:', '')
('name::', 'Medullary collateral inhibitory neuron', 'id:', 'nlx_152082', 'prefix:', '')
('name::', 'Neocortex chandelier cell', 'id:', 'nifext_57', 'prefix:', '')
(' syn::', 'Cortical chandelier cell')
(' syn::', 'Chandelier cell')
(' syn::', 'Chandelier-type cell')
('name::', 'Neocortex basket cell', 'id:', 'nifext_56', 'prefix:', '')
(' syn::', 'cortical basket cell')
(' syn::', 'basket cell')
(' syn::', 'cortical basket neuron')
(' syn::', 'Neocortical basket cell')
(' syn::', 'parvalbumin interneuron')
('name::', 'Neocortex polymorphic cell layer 5-6', 'id:', 'nifext_51', 'prefix:', '')
(' syn::', 'polymorphic cell')
(' syn::', 'Layer 5-6 polymorphic cell')
(' syn::', 'Neocortex polymorphic neuron layer 5-6')
('name::', 'Neocortex pyramidal cell layer 5-6', 'id:', 'nifext_50', 'prefix:', '')
(' syn::', 'deep pyramidal cell')
(' syn::', 'Neocortex pyramidal neuron layer 5-6')
(' syn::', 'Layer 5-6 pyramidal cell')
(' syn::', 'layer 5 pyramidal neuron')
(' syn::', 'layer 5 pyramidal cell')
(' syn::', 'Tufted layer 5 (TL5) pyramidal neurons')
('name::', 'Neocortex stellate layer 4 cell', 'id:', 'nifext_53', 'prefix:', '')
(' syn::', 'Cortical stellate cell')
(' syn::', 'cortical stellate neuron')
(' syn::', 'cortical spiny stellate cell')
('name::', 'Cranial relay neuron', 'id:', 'nlx_152084', 'prefix:', '')
('name::', 'Lch1 neuron', 'id:', 'nlx_148449', 'prefix:', '')
('name::', 'Horizontal fiber system neuron pb2', 'id:', 'nlx_148248', 'prefix:', '')
('name::', 'Aplysia buccal 51', 'id:', 'nlx_152108', 'prefix:', '')
('name::', 'Hirudo P Cell', 'id:', 'nlx_79073', 'prefix:', '')
(' syn::', 'Pressure Cell')
(' syn::', 'P Cell')
('name::', 'Cerebellum Lugaro cell', 'id:', 'nifext_133', 'prefix:', '')
('name::', 'Cerebellum unipolar brush cell', 'id:', 'nifext_132', 'prefix:', '')
(' syn::', 'Unipolar brush neuron')
(' syn::', 'Unipolar brush cell')
('name::', 'Dorsal root ganglion C non-nociceptive neuron', 'id:', 'nlx_152100', 'prefix:', '')
('name::', 'Cerebellum stellate cell', 'id:', 'nifext_130', 'prefix:', '')
(' syn::', 'Cerebellar stellate neuron')
(' syn::', 'Cerebellar stellate cell')
('name::', 'Ocellus retinula cell', 'id:', 'nlx_147816', 'prefix:', '')
('name::', 'Aplysia buccal 20', 'id:', 'nlx_152107', 'prefix:', '')
('name::', 'Cochlear nucleus (dorsal) unipolar brush cell', 'id:', 'nifext_135', 'prefix:', '')
(' syn::', 'DCN glutamatergic cell')
(' syn::', 'Dorsal cochlear nucleus glutamatergic cell')
('name::', 'Neocortex candelabrum cell', 'id:', 'nifext_134', 'prefix:', '')
(' syn::', 'candelabrum neuron')
(' syn::', 'candelabrum cell')
('name::', 'U1sib neuron', 'id:', 'nlx_146561', 'prefix:', '')
('name::', 'Usib neuron', 'id:', 'nlx_146560', 'prefix:', '')
('name::', 'U3sib neuron', 'id:', 'nlx_146563', 'prefix:', '')
('name::', 'U2sib neuron', 'id:', 'nlx_146562', 'prefix:', '')
('name::', 'Neocortex stellate cell', 'id:', 'nifext_52', 'prefix:', '')
(' syn::', 'cortical stellate cell')
(' syn::', 'layer 4 stellate cell')
(' syn::', 'stellate cell cortical')
('name::', 'Pupal Pdf neuron close to calyx', 'id:', 'nlx_148525', 'prefix:', '')
('name::', 'Pupal Pdf neuron', 'id:', 'nlx_148522', 'prefix:', '')
('name::', 'Adult Pdf neuron', 'id:', 'nlx_148521', 'prefix:', '')
('name::', 'Extra LNd neuron', 'id:', 'nlx_148520', 'prefix:', '')
('name::', 'Aplysia buccal 30', 'id:', 'nlx_152511', 'prefix:', '')
('name::', 'Pupal s-LNv neuron', 'id:', 'nlx_148529', 'prefix:', '')
('name::', 'Large field neuron', 'id:', 'nlx_147382', 'prefix:', '')
('name::', 'Ring neuron', 'id:', 'nlx_147383', 'prefix:', '')
('name::', 'Class IV dendritic arborizing neuron', 'id:', 'nlx_148059', 'prefix:', '')
(' syn::', 'class IV da')
('name::', 'Class III dendritic arborizing neuron', 'id:', 'nlx_148058', 'prefix:', '')
(' syn::', 'class III da')
('name::', 'SpA neuron', 'id:', 'nlx_146740', 'prefix:', '')
('name::', 'A2 neuron', 'id:', 'nlx_146709', 'prefix:', '')
('name::', 'A1 neuron', 'id:', 'nlx_146708', 'prefix:', '')
('name::', 'Type B interneuron', 'id:', 'nlx_147749', 'prefix:', '')
('name::', 'Accumbens nucleus shell neuron', 'id:', 'nlx_151893', 'prefix:', '')
('name::', 'Johnston organ neuron', 'id:', 'nlx_148419', 'prefix:', '')
(' syn::', 'JON')
('name::', 'Accumbens nucleus core nucleus neuron', 'id:', 'nlx_151892', 'prefix:', '')
('name::', 'Cerebellar deep nucleus principal neuron', 'id:', 'nlx_151895', 'prefix:', '')
('name::', 'Suprachiasmatic nucleus principal neuron', 'id:', 'nlx_151894', 'prefix:', '')
(' syn::', 'SCN neuron')
('name::', 'Head direction cell', 'id:', 'nlx_144208', 'prefix:', '')
(' syn::', 'Head-direction cell')
('name::', 'Grid cell', 'id:', 'nlx_144209', 'prefix:', '')
('name::', 'Adult dMP2 ILP7 neuron', 'id:', 'nlx_148840', 'prefix:', '')
('name::', 'Neocortex stellate spiny cell', 'id:', 'sao1236796660', 'prefix:', '')
(' syn::', 'Cortical Spiny Stellate Cell')
('name::', 'Bed nucleus of the stria terminalis triangular neuron', 'id:', 'BAMSC989', 'prefix:', '')
(' syn::', 'triangular cell')
(' syn::', 'BNST triangular neuron')
('name::', 'Mesothoracic ventral neurosecretory neuron', 'id:', 'nlx_147774', 'prefix:', '')
('name::', 'Neocortex Dorsolateral Prefrontal Area layer 2 parvalbumin cell', 'id:', 'nlx_157279', 'prefix:', '')
(' syn::', 'Neocortical interneurons')
(' syn::', 'GABAergic interneurons')
(' syn::', 'Inhibitory interneurons')
('name::', 'Pupal tachykinin neuron of the central nervous system', 'id:', 'nlx_149021', 'prefix:', '')
('name::', 'Adult tachykinin neuron of the central nervous system', 'id:', 'nlx_149020', 'prefix:', '')
('name::', 'Adult leucokinin neuron of the central nervous system', 'id:', 'nlx_149023', 'prefix:', '')
('name::', 'Aplysia buccal 31', 'id:', 'nlx_152516', 'prefix:', '')
(' syn::', 'Aplysia buccal 31')
(' syn::', 'Aplysia buccal 32')
('name::', 'Hippocampus CA1 pyramidal cell', 'id:', 'sao830368389', 'prefix:', '')
(' syn::', 'Hippocampal CA1 Pyramidal Neuron')
(' syn::', 'CA1 pyramidal neuron')
(' syn::', 'Hippocampal CA1 pyramidal cell')
('name::', 'Aplysia buccal 61', 'id:', 'nlx_152510', 'prefix:', '')
(' syn::', 'Aplysia buccal 62')
(' syn::', 'B62')
done :-)
In [5]:
import pickle
pickle.dump(hbp_cell_names_processed, open('hbp_cell_names_processed.pckl', 'wb'))
pickle.dump(nlex_cell_names_processed, open('nlex_cell_names_processed.pckl', 'wb'))
In [6]:
print hbp_cell_names['HBP_CELL:0000064']
print hbp_cell_names_processed['HBP_CELL:0000064']
('Nest Basket Cell', ['arcade cell', 'willow cell', 'NBC'])
[[u'ABA_REGION:315', u'HBP_MORPHOLOGY:0000018', u'HBP_MORPHOLOGY:0000019'], [u'ABA_REGION:315', 'Missing:arcade'], [u'ABA_REGION:315', 'Missing:willow'], [u'ABA_REGION:315', u'NCBI_GENE:54403']]
In [17]:
print nlex_cell_names['nifext_56']
print nlex_cell_names_processed['nifext_56']
('Neocortex basket cell', ['cortical basket cell', 'basket cell', 'cortical basket neuron', 'Neocortical basket cell', 'parvalbumin interneuron'])
[[u'ABA_REGION:315', u'HBP_MORPHOLOGY:0000019'], [u'ABA_REGION:688', u'HBP_MORPHOLOGY:0000019'], [u'HBP_MORPHOLOGY:0000019'], [u'ABA_REGION:688', u'HBP_MORPHOLOGY:0000019'], [u'ABA_REGION:315', u'HBP_MORPHOLOGY:0000019'], [u'NCBI_GENE:19293']]
In [18]:
similarity2(hbp_cell_names_processed['HBP_CELL:0000064'][0], nlex_cell_names_processed['nifext_56'][0])
Out[18]:
(0.8333333333333334,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]])
In [20]:
#%debug
hbp_hits={}
for hbp_id, hbp_cell_variants in hbp_cell_names_processed.items():
hbp_variant = hbp_cell_variants[0] # just the 1st one TODO
if len(hbp_variant) == 0:
print('NO VARIANT FOR ', hbp_id, hbp_cell_names[hbp_id])
else:
hits = []
for nlex_id, nlex_cell_variants in nlex_cell_names_processed.items():
for variant in nlex_cell_variants:
if len(variant) == 0: continue
#print("sim: HBP::",hbp_variant, "NLEX::",variant, "nlex_id",nlex_id)
sim = similarity2(hbp_variant, variant, use_inter_similarity=True)
if sim[0] > 0:
#print('hit for',hbp_variant, 'WITH',variant[0])
hits.append((nlex_id,) + sim)
hbp_hits[hbp_id] = hits
print('hits', len(hbp_hits))
#hit: (nlex_id, sim_score, explanations...)
('hits', 133)
In [21]:
hbp_hits['HBP_CELL:0000064']
Out[21]:
[('nlx_143940',
0.3673469387755102,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_134',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156753',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156753',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156750',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156750',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156754',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156754',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('BAMSC988',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('BAMSC988',
0.4,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('BAMSC988',
0.4,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('BAMSC988',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('BAMSC988',
0.4444444444444444,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('sao910084726',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_cell_20081206',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157255',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157255',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_cell_091207',
0.3076923076923077,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_cell_091207',
0.4,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_cell_091205',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_cell_091205',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_cell_091208',
0.3076923076923077,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_cell_091208',
0.4,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_cell_100201',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_cell_100201',
0.36363636363636365,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nifext_52',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_149090',
0.23529411764705882,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nifext_49',
0.35714285714285715,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_49',
0.35714285714285715,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_49',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_152139',
0.3461538461538462,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157282',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157282',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157283',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157283',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157280',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157280',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_152226',
0.35714285714285715,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_152140',
0.3461538461538462,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_143938',
0.3461538461538462,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156739',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156739',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('sao666951243',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('sao666951243',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('sao2128417084',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('sao2128417084',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('sao2128417084',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('sao2128417084',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_151709',
0.2368421052631579,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_151708',
0.3461538461538462,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_151707',
0.35714285714285715,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_cell_091213',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_cell_091213',
0.2857142857142857,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nlx_152138',
0.32727272727272727,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156749',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156749',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_81',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('sao770302354',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_55',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_57',
0.5,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_56',
0.8333333333333334,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nifext_56',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nifext_56',
0.4444444444444444,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nifext_56',
0.3333333333333333,
[[],
[],
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nifext_56',
0.8333333333333334,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
([u'HBP_MORPHOLOGY:0000019'], 'shares morphology'),
[],
[],
[]]),
('nifext_51',
0.35714285714285715,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_51',
0.35714285714285715,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_50',
0.35714285714285715,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_50',
0.35714285714285715,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nifext_53',
0.3461538461538462,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('sao1236796660',
0.42857142857142855,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157279',
0.3103448275862069,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157279',
0.6,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]])]
In [60]:
#%debug
import collections
def flatten(l):
for el in l:
if isinstance(el, collections.Iterable) and not isinstance(el, basestring):
for sub in flatten(el):
yield sub
else:
yield el
def get_key(item):
return item[1]
with open('hbp-neurolex.tsv', 'w') as outf:
outf.write('BBP label BBP rdf Neurolex name % Neurolex ID\n')
for hbp_id, hits in hbp_hits.items():
if len(hits) > 0:
hits_sorted = sorted(hits, key=get_key, reverse=True)
#print('{} ({})'.format(hbp_cell_names[hbp_id][0], hbp_id))
already_printed = []
for nlex_id, score, explain in hits_sorted[:5]:
# only if more than Neocortex
explain_str = ' '.join(flatten(explain))
if nlex_id not in already_printed and explain_str != 'ABA_REGION:315 exact same brain region':
already_printed.append(nlex_id)
#print explain_str
#print '* {} ({}, {})'.format(nlex_cell_names[nlex_id][0], round(score, 2), nlex_id)
outf.write('{}\t{}\t{}\t{}\t{}\t{}\n'.format(hbp_cell_names[hbp_id][0], hbp_id, nlex_cell_names[nlex_id][0], round(score, 2), nlex_id, explain_str))
In [45]:
cell_= 'Nest Basket Cell' #'nest basket cell'
_cleanup(neuroner.annotate(cell_).annotations)
Out[45]:
[u'HBP_MORPHOLOGY:0000018', u'HBP_MORPHOLOGY:0000019']
In [47]:
sorted(hbp_hits['HBP_CELL:0000061'], key=get_key, reverse=True)[:5]
Out[47]:
[('nlx_cell_20081206',
1.0,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
([u'HBP_MORPHOLOGY:0000008'], 'shares morphology'),
[],
[],
[]]),
('nlx_156753',
0.75,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156750',
0.75,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_156754',
0.75,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]]),
('nlx_157255',
0.75,
[[],
(['ABA_REGION:315'], 'exact same brain region'),
[],
[],
[],
[],
[],
[]])]
In [ ]:
Content source: renaud/neuroNER
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