In [47]:
import gensim
import pymongo
from pymongo import MongoClient
mongo_url = 'mongodb://localhost:27017/'
db = 'CamSim'
coll = 'CamAuthors'
client = MongoClient(mongo_url)
ca = client[db][coll]
sim_name = 'SimEngine'
model = gensim.models.Word2Vec.load(sim_name)
In [66]:
import time
cur1=ca.find()
for rec1 in cur1[0:1]:
corp1 = rec['corpus']
sims = []
x = time.time()
cur2 = ca.find()
for rec2 in cur2:
corp2 = rec2['corpus']
s = model.n_similarity(corp1.split(),corp2.split())
sims.append({rec2['name']:s})
ca.update_one({'name':rec1['name']},{'$set':{'sims':sims}})
print (unicode(str(time.time() - x)) + u' seconds to produce sims for '+rec1['name'])
5.73730301857 seconds to produce sims for lc smeeton
In [40]:
print corp1
[u'structures', u'energy', u'landscapes', u'hydrated', u'sulfate', u'clusters']
In [17]:
'{} {} {} '.format(*['key1','key2','key3'])
Out[17]:
'key1 key2 key3 '
In [71]:
c =ca.find_one({'name':'lc smeeton'})
c['sims']
Out[71]:
[{u'lc smeeton': 1.0},
{u'lk chan': 0.25804894026371106},
{u'ap ivanov': 0.6765211782238125},
{u'h-f chow': 0.28222684365228345},
{u't rovis': 0.28222684365228345},
{u'g filippini': 0.7620304001789949},
{u'e esposito': 0.8113688266721876},
{u'y chebaro': 0.8570649472872396},
{u'ka thomas': 0.5200207567545527},
{u'r mezzenga': 0.7402659294986236},
{u'e ertekin': 0.7474813942300051},
{u'aj liu': 0.8512073929304566},
{u'ic mangialavori': 0.5562615378894965},
{u"tv o'halloran": 0.41561443139799314},
{u'n shivananju': 0.007994889633517419},
{u'ap johnson': 0.666169134054157},
{u'va makarov': 0.47030720945257554},
{u'f kawasaki': 0.4404916430290201},
{u'gt heller': 0.7001570668343831},
{u'i landrieu': 0.3505365468080689},
{u'aj mcconnell': 0.6531464176068522},
{u'e bouvier': 0.7598955375509691},
{u'a nekrutenko': 0.7598955375509691},
{u's g\xe9rard': 0.6620338613206621},
{u'a oliynyk': 0.7574368546779484},
{u'kh sutherland-casha': 0.7898343130561664},
{u'r gaji\u0107': 0.8355676797917466},
{u'lh thamdrup': 0.5533213246318083},
{u'ra stockman': 0.7828714576486103},
{u'sj fernstad': 0.5133961239929467},
{u'aj kooistra': 0.7579366618451837},
{u'n cohrs': 0.41319284319625266},
{u'sb lou': 0.5317313950996037},
{u'em llamas': 0.4463475020916444},
{u'd montes-grajales': 0.31456973218458145},
{u'yk motamedi': 0.7005425640781344},
{u'm peymani': 0.7005425640781344},
{u'mh nasr-esfahani': 0.7005425640781344},
{u'c combadi\xe8re': 0.47176658658189613},
{u'r barton': 0.8388089056885702},
{u'c huynen': 0.43443981838788154},
{u'n willet': 0.43443981838788154},
{u'q lu': 0.5718683871568536},
{u'hg hiscock': 0.6520703553406388},
{u'xd liu': 0.7452824567779577},
{u'nm wilf': 0.5394396992071904},
{u'f kundel': 0.646515115825771},
{u'pms cunha': 0.7953016907556987},
{u'z rong': 0.6935245663950586},
{u'v andr\xe9': 0.4771499324410926},
{u'j negele': 0.7519357058508721},
{u'ac bra\u0144ka': 0.7959669175090609},
{u's ball': 0.27169972516992497},
{u'lc andreani': 0.6731029745058987},
{u'jl sussman': -0.7796450414033707},
{u'ce atkinson': -0.09984641555522353},
{u'p deoliveira': 0.37772125288458536},
{u'jg kircz': 0.8571974302982955},
{u'y kong': 0.5693413014404212},
{u'c rovira': 0.5693413014404212},
{u'p bernad\xf3': 0.5693413014404212},
{u'h clausen': 0.5693413014404212},
{u'a lostao': 0.5693413014404212},
{u'p nogueira': 0.5562615378894965},
{u'j freitas': 0.5562615378894965},
{u'g lacroix': 0.5562615378894965},
{u'a moreira': 0.5562615378894965},
{u'jp rossi': 0.5562615378894965},
{u'p braeuninger-weimer': 0.6708261522675526},
{u'z cournia': 0.5688457422323954},
{u'tw allen': 0.5688457422323954},
{u'i andricioaei': 0.5688457422323954},
{u'b antonny': 0.5688457422323954},
{u'd baum': 0.5688457422323954},
{u'g brannigan': 0.5688457422323954},
{u'jt deckman': 0.5688457422323954},
{u'l delemotte': 0.5688457422323954},
{u'c del val': 0.5688457422323954},
{u'r friedman': 0.5688457422323954},
{u'p gkeka': 0.5688457422323954},
{u'hc hege': 0.5688457422323954},
{u'j h\xe9nin': 0.5688457422323954},
{u'ma kasimova': 0.5688457422323954},
{u'a kolocouris': 0.5688457422323954},
{u'mj lemieux': 0.5688457422323954},
{u'n lindow': 0.5688457422323954},
{u'm roy': 0.5688457422323954},
{u'j selent': 0.5688457422323954},
{u'm tarek': 0.5688457422323954},
{u'f tofoleanu': 0.5688457422323954},
{u's vanni': 0.5688457422323954},
{u's urban': 0.5688457422323954},
{u'jc smith': 0.5688457422323954},
{u'an bondar': 0.5688457422323954},
{u'ys yu': 0.6851170601895096},
{u'c kim': 0.6851170601895096},
{u'da shapiro': 0.6851170601895096},
{u'm farmand': 0.6851170601895096},
{u't tyliszczak': 0.6851170601895096},
{u'al kilcoyne': 0.6851170601895096},
{u'r celestre': 0.6851170601895096},
{u's marchesini': 0.6851170601895096},
{u'j joseph': 0.6851170601895096},
{u'p denes': 0.6851170601895096},
{u't warwick': 0.6851170601895096},
{u'h padmore': 0.6851170601895096},
{u's castill\xf3n': 0.08603016365723612},
{u'i sovago': 0.2236019515198537},
{u'r pini': 0.4987869419356544},
{u'j castro-l\xf5pez': 0.6286693517734577},
{u'i compa\xf1\xf5n': 0.6286693517734577},
{u'm salvad\xf5': 0.6286693517734577},
{u'rc walsh': 0.8491597926194829},
{u'tds young': 0.8491597926194829},
{u't cao': 0.7841084938807179},
{u'c chen': 0.7841084938807179},
{u'h jia': 0.7841084938807179},
{u'x zhou': 0.7841084938807179},
{u'c calero': 0.5894356646818838},
{u'j mart\xed': 0.5894356646818838},
{u'a sinha': 0.007994889633517419},
{u'pr preiser': 0.007994889633517419},
{u'r chandramohanadas': 0.007994889633517419},
{u'ia boutle': 0.8202344339490797},
{u'ob riabova': 0.47030720945257554},
{u'dm walther': 0.05386313251164653},
{u'p kasturi': 0.05386313251164653},
{u'm zheng': 0.05386313251164653},
{u'g vecchi': 0.05386313251164653},
{u'm mann': 0.05386313251164653},
{u're hardisty': 0.4404916430290201},
{u'hm walker': 0.6681333066854},
{u'a colette': 0.7335259187235926},
{u'e-r jane\u010dek': 0.7484621579389477},
{u'ns gandhi': 0.3505365468080689},
{u'ljc jeuken': 0.6485944187619704},
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{u'a renzetti': 0.6620338613206621},
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{u'j sapi': 0.6620338613206621},
{u'c villani': 0.6620338613206621},
{u'j medley-hallam': 0.710523828302539},
{u'fr manby': 0.8069182684883409},
{u'pp upadhyay': -0.1714077876870926},
{u'me briggs': 0.32780751447899437},
{u'ag slater': 0.32780751447899437},
{u'jj velasco-velez': 0.6064292371164671},
{u'v pfeifer': 0.6064292371164671},
{u'r arrigo': 0.6064292371164671},
{u'p biswas': 0.3356654225941874},
{u'j ma': 0.11079638191214002},
{u'wn zhao': 0.39310240337168184},
{u'sd kloss': 0.6161520921464435},
{u'e meneguz': 0.7791900422490776},
{u'pj butterworth': 0.05824801251401955},
{u'wd blaylock': 0.6827990086143281},
{u'se dutton': -0.06265635197951576},
{u'n nikolovski': 0.6402946485811534},
{u'dm lienhard': 0.6402946485811534},
{u'c teichert': 0.8355676797917466},
{u'l br\xe9gonzio-rozier': 0.5988694092383448},
{u'js bett': 0.5721054136446703},
{u'ms ritorto': 0.5721054136446703},
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{u'wa vigor': 0.6100571286735811},
{u't nielsen': 0.5533213246318083},
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{u'aj johnston': -0.011962324333102063},
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{u't te\u015fileanu': 0.35293474357042265},
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{u'm yagi-utsumi': 0.42402018521881685},
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{u'el hogg': 0.22496915761069694},
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{u'sm bijvoets': 0.04434084342374495},
{u'cj chandler': 0.44334350668162703},
{u'j brodie': 0.44334350668162703},
{u't gregory': 0.44334350668162703},
{u'rh walker': 0.44334350668162703},
{u'ar choudhury': 0.4240452623810896},
{u'e sikorska': 0.4240452623810896},
{u'j van den boom': 0.4240452623810896},
{u'p bayer': 0.4240452623810896},
{u'\u0142 popenda': 0.4240452623810896},
{u'i zhukov': 0.4240452623810896},
{u's passamonti': 0.4240452623810896},
{u'm novi\u010d': 0.4240452623810896},
{u'r kundra': 0.39749111675323584},
{u's collins': 0.2569018762863152},
{u'u weininger': 0.6508665774385092},
{u'k bernfur': 0.6508665774385092},
{u'sc hook': 0.28579159784112074},
{u'c deville': 0.1437906024405865},
{u'm finsel': 0.1437906024405865},
{u'dp de sousa': 0.1437906024405865},
{u'b szafranowska': 0.1437906024405865},
{u'j behnken': 0.1437906024405865},
{u's svane': 0.1437906024405865},
{u'n baumlin': 0.7335421955374236},
{u'c str\xe4hl': 0.7335421955374236},
{u'l d\xfcmbgen': 0.7335421955374236},
{u'sm dean': 0.8256898690381885},
{u'm joshi': 0.7531648854393062},
{u'a osprey': 0.6924718078925167},
{u'ns blunt': 0.6699886370794916},
{u'ms frei': -0.2862003753277198},
{u'mk bilyard': -0.2862003753277198},
{u'd sanfelice': 0.19521052005383},
{u's faggiano': 0.19521052005383},
{u"a d'urzo": 0.6144787759310434},
{u'a konijnenberg': 0.6144787759310434},
{u'r grandori': 0.6144787759310434},
{u'i hands-portman': 0.7822015604693492},
{u'n martinez-s\xe1ez': 0.3605503104429742},
{u'd andreu': 0.3605503104429742},
{u'j l asensio': 0.3605503104429742},
{u'cn johnson': 0.1546169179601414},
{u'd hurst': 0.1546169179601414},
{u'a cridland': 0.1546169179601414},
{u'd vesey': 0.1546169179601414},
{u'i wall': 0.1546169179601414},
{u'm ahmed': 0.1546169179601414},
{u'd rivers': 0.1546169179601414},
{u'j myatt': 0.1546169179601414},
{u'g giblin': 0.1546169179601414},
{u'k philpott': 0.1546169179601414},
{u'u kumar': 0.1546169179601414},
{u'a stevens': 0.1546169179601414},
{u'ra bit': 0.1546169179601414},
{u'r watson': 0.1546169179601414},
{u'j witherington': 0.1546169179601414},
{u'e demont': 0.1546169179601414},
{u'm carraro': -0.20070081299533304},
{u'c meloni': -0.20070081299533304},
{u'i murgia': -0.20070081299533304},
{u'm pittalis': -0.20070081299533304},
{u'ar pallipurath': 0.49184134161417603},
{u'h coelho': 0.5433472085887868},
{u'j valero-gonz\xe1lez': 0.72780544890632},
{u'j castro-l\xf3pez': 0.7046669475674083},
{u'sp tiwari': 0.3270151806113392},
{u'kr kemplen': 0.48876180199559194},
{u'n reuter': 0.3270151806113392},
{u'p fariselli': 0.6309640686768684},
{u'l lozano': -0.13296292006594246},
{u'st chill': 0.6409265197637345},
{u'j stevenson': 0.6409265197637345},
{u'v ruehle': 0.6409265197637345},
{u'aj ballard': 0.8369030714211748},
{u'c jer\xf4me': 0.43443981838788154},
{u'gf wei': 0.7512097477047511},
{u'j philpott': 0.6356673425000483},
{u'nw waggoner': 0.3813903657242474},
{u'b saccoccia': 0.3813903657242474},
{u'ia ibarra': 0.3813903657242474},
{u'vm lynch': 0.3813903657242474},
{u'i efimov': 0.3684654660037165},
{u'ks \xe5kerfeldt': 0.3684654660037165},
{u'b berger': 0.6441610763450416},
{u'j bernard': 0.6441610763450416},
{u'm bhattacharjee': 0.6441610763450416},
{u'k bhuvaneshwar': 0.6441610763450416},
{u'aa bieberich': 0.6441610763450416},
{u'f boehm': 0.6441610763450416},
{u'yc chebaro': 0.5287079309425664},
{u'f fazeli': 0.7638726189265731},
{u'p maxwell': 0.89817990858175},
{u'n south': 0.8911230793800029},
{u'j kling': 0.7841031579540944},
{u'a lipovsky': 0.2919919804103477},
{u'r hommel': 0.7725589633164162},
{u'lw thomason': 0.7725589633164162},
{u't mueller': 0.4500121962736325},
{u'j billaud': 0.5226516322436968},
{u'j canales-v\xe1zquez': 0.5226516322436968},
{u'p rozier': 0.5226516322436968},
{u'mk mishra': 0.6838944099625129},
{u're turner': 0.8154637678678028},
{u'ka see': 0.360539614981376},
{u's britto': 0.5553680421515232},
{u'a emly': 0.360539614981376},
{u'a van der ven': 0.360539614981376},
{u'te allen': 0.4791365408089771},
{u's gutsell': 0.4791365408089771},
{u'b amgarten': 0.3774043922011907},
{u'bl oliveira': 0.6017596271280096},
{u'y song': 0.18518384734230325},
{u'j brujic': 0.18518384734230325},
{u'hc shum': 0.18518384734230325},
{u'it lucas': 0.5610296680804403},
{u'as mcleod': 0.5610296680804403},
{u'js syzdek': 0.5610296680804403},
{u'dn basov': 0.5610296680804403},
{u'de fitzpatrick': 0.4617462549466549},
{u'gi lampronti': 0.393242990441628},
{u'j luo': 0.5574208922931468},
{u'y naro': 0.5574208922931468},
{u's fenner': 0.15192082007432045},
{u'wj venstra': 0.7679456045299659},
{u'j hirst': 0.058648860944193686},
{u'ico ciriano': 0.8533676146444207},
{u'r jeffrey': -0.2987029546222533},
{u'pgj plaza-alexander': -0.2987029546222533},
{u'm greiner': 0.8185431708855375},
{u'pc seville': 0.7563201985352402},
{u'l nicoud': 0.42708183019636536},
{u'm morbidelli': 0.42708183019636536},
{u'jp rodrigues': 0.4055415756652684},
{u'v pandey': 0.33629785188458233},
{u'mk shanmugam': 0.33629785188458233},
{u'a deivasigamani': 0.33629785188458233},
{u'km hui': 0.33629785188458233},
{u'pe lobie': 0.33629785188458233},
{u'l josa-culler\xe9': 0.5671968091268575},
{u'v oleinikovas': 0.3658457360002886},
{u'cm baker': 0.3658457360002886},
{u'kj huang': 0.6623324733175441},
{u'ss qamar': 0.6311059498499381},
{u'p farah': 0.8090380511267528},
{u'k hadje-georgiou': 0.5315648068967886},
{u'c lucas': 0.2389008959762163},
{u'cjl goddard': 0.7402050773657636},
{u'jc meyer': 0.7402050773657636},
{u's uhl': 0.7946461984248279},
{u't journot': 0.7946461984248279},
{u'a snyder-keller': 0.3367462365467169},
{u's-jm hsieh': 0.13540707362051901},
{u'lsh dixon': -0.13149136184965188},
{u'da jacques': 0.30238053379825164},
{u'wa mcewan': 0.30238053379825164},
{u's essig': 0.30238053379825164},
{u'pmsd cal': 0.4887786666725877},
{u'pmp gois': 0.4887786666725877},
{u'a grossmann': 0.27220849059541385},
{u's bartlett': 0.4581798577981614},
{u'b baptiste': 0.44134858706551483},
{u'ic ciriano': 0.8533676146444207},
{u'n simon-delso': 0.7395429417670007},
{u'v amaral-rogers': 0.7318753036434127},
{u'h van dyck': 0.7318753036434127},
{u'jh pereira': 0.30442570804053276},
{u'c petchprayoon': 0.30442570804053276},
{u'pd adams': 0.30442570804053276},
{u'm ogawa': 0.6662368477920725},
{u'a toto': 0.29443848916601906},
{u'd bonetti': 0.29443848916601906},
{u'a morrone': 0.29443848916601906},
{u'h takahashi': 0.12196042764874773},
{u't shirafuji': 0.12196042764874773},
{u's danno': 0.12196042764874773},
{u't ueyama': 0.12196042764874773},
{u'an shuvaev': 0.12196042764874773},
{u'jm mart\xedn-\xe1lvarez': -0.05012464150554355},
{u'vm ray\xf3n': 0.5381810860083597},
{u'p bombelli': 0.7694866801377107},
{u'cj howe': 0.7694866801377107},
{u'm aggerbeck': 0.7371344722613711},
{u's canulescu': 0.7820314887414341},
{u'k dirscherl': 0.7371344722613711},
{u's engberg': 0.7371344722613711},
{u'j schou': 0.7820314887414341},
{u'mf mohamed': 0.5896495498552673},
{u'i ivani': 0.5472330012665729},
{u'g kieslich': 0.43479415894612805},
{u'i lieberwirth': 0.43479415894612805},
{u'd schiavone': 0.45078555853833524},
{u'g guilbaud': 0.45078555853833524},
{u'c papadopoulou': 0.45078555853833524},
{u'p sarkies': 0.3840457472912829},
{u'mn prioleau': 0.45078555853833524},
{u'je sale': 0.3840457472912829},
{u'h amara': 0.8336765693093324},
{u'm diarra': 0.8336765693093324},
{u'f ducastelle': 0.8336765693093324},
...]
In [64]:
print(len(sims))
4570
In [ ]:
Content source: patrick-s-h-lewis/CamSim
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