In [1]:

    

workDir = '/home/nick/notebook/SIPSim/dev/bac_genome1210/'
buildDir = os.path.join(workDir, 'atomIncorp_evenness')
genomeDir = '/home/nick/notebook/SIPSim/dev/bac_genome1210/genomes/'
R_dir = '/home/nick/notebook/SIPSim/lib/R/'


    

In [2]:

    

import glob
from os.path import abspath
import nestly
from IPython.display import Image, display


    

In [3]:

    

%load_ext rpy2.ipython


    

In [4]:

    

%%R
library(ggplot2)
library(dplyr)
library(tidyr)
library(gridExtra)


    

    






Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

Loading required package: grid

In [5]:

    

if not os.path.isdir(buildDir):
    os.makedirs(buildDir)


    

In [6]:

    

!cd $buildDir; \
    SIPSim fragments \
    $genomeDir/genome_index.txt \
    --fp $genomeDir \
    --fr ../../515F-806R.fna \
    --fld skewed-normal,9000,2500,-5 \
    --flr None,None \
    --nf 10000 \
    --np 24 \
    2> ampFrags.log \
    > ampFrags.pkl


    

In [7]:

    

!cd $buildDir; \
    SIPSim fragment_kde \
    ampFrags.pkl \
    > ampFrags_kde.pkl


    

In [8]:

    

!cd $buildDir; \
    SIPSim diffusion \
    ampFrags_kde.pkl \
    --np 24 \
    > ampFrags_kde_dif.pkl


    

    




Processing: Vibrio_vulnificus_MO6-24_O
Processing: Dyella_japonica_A8
Processing: Citrobacter_koseri_ATCC_BAA-895
Processing: Leisingera_methylohalidivorans_DSM_14336
Processing: Arthrobacter_arilaitensis_Re117
Processing: Veillonella_parvula_DSM_2008
Processing: Rhodococcus_jostii_RHA1
Processing: Croceibacter_atlanticus_HTCC2559
Processing: Corynebacterium_diphtheriae_C7_beta
Processing: Borrelia_burgdorferi_ZS7
Processing: Desulfovibrio_salexigens_DSM_2638
Processing: Glaciecola_psychrophila_170
Processing: Mycoplasma_haemocanis_str_Illinois
Processing: Hyphomicrobium_nitrativorans_NL23
Processing: Pedobacter_heparinus_DSM_2366
Processing: Candidatus_Rickettsia_amblyommii_str_GAT-30V
Processing: Beutenbergia_cavernae_DSM_12333
Processing: Chlorobaculum_parvum_NCIB_8327
Processing: Spiroplasma_diminutum_CUAS-1
Processing: Bifidobacterium_adolescentis_ATCC_15703
Processing: Morganella_morganii_subsp_morganii_KT
Processing: Desulfurobacterium_thermolithotrophum_DSM_11699
Processing: Pseudomonas_aeruginosa_RP73
Processing: Treponema_primitia_ZAS-2
Processing: Echinicola_vietnamensis_DSM_17526
Processing: Alteromonas_macleodii_str_Balearic_Sea_AD45
Processing: Methylovorus_glucosetrophus_SIP3-4
Processing: Klebsiella_pneumoniae_30660_NJST258_1
Processing: Alkalilimnicola_ehrlichii_MLHE-1
Processing: Chromobacterium_violaceum_ATCC_12472
Processing: Runella_slithyformis_DSM_19594
Processing: Meiothermus_ruber_DSM_1279
Processing: Haemophilus_somnus_129PT
Processing: Vibrio_tubiashii_ATCC_19109
Processing: Leadbetterella_byssophila_DSM_17132
Processing: Helicobacter_cetorum_MIT_00-7128
Processing: Caldisericum_exile_AZM16c01
Processing: Spiroplasma_taiwanense_CT-1
Processing: Acidiphilium_multivorum_AIU301
Processing: Prevotella_sp_oral_taxon_299_str_F0039
Processing: Campylobacter_lari_RM2100
Processing: Candidatus_Koribacter_versatilis_Ellin345
Processing: Burkholderia_multivorans_ATCC_17616
Processing: Pseudomonas_denitrificans_ATCC_13867
Processing: Corynebacterium_efficiens_YS-314
Processing: Capnocytophaga_ochracea_DSM_7271
Processing: Thalassospira_xiamenensis_M-5_DSM_17429
Processing: Thermodesulfatator_indicus_DSM_15286
Processing: Corynebacterium_urealyticum_DSM_7109
Processing: Magnetospirillum_gryphiswaldense_MSR-1_v2
Processing: Treponema_paraluiscuniculi_Cuniculi_A
Processing: Hyphomicrobium_denitrificans_1NES1
Processing: Gallionella_capsiferriformans_ES-2
Processing: Enterococcus_faecalis_D32
Processing: Candidatus_Kinetoplastibacterium_galatii_TCC219
Processing: Lactococcus_garvieae_ATCC_49156
Processing: Polymorphum_gilvum_SL003B-26A1
Processing: Vibrio_parahaemolyticus_RIMD_2210633
Processing: Blattabacterium_sp_Blatta_orientalis_str_Tarazona
Processing: Erysipelothrix_rhusiopathiae_SY1027
Processing: Rickettsia_sibirica_246
Processing: Microlunatus_phosphovorus_NM-1
Processing: Enterobacter_aerogenes_KCTC_2190
Processing: Shewanella_sediminis_HAW-EB3
Processing: Aequorivita_sublithincola_DSM_14238
Processing: Treponema_brennaborense_DSM_12168
Processing: Prevotella_intermedia_17
Processing: Janthinobacterium_agaricidamnosum_NBRC_102515_DSM_9628
Processing: Flavobacterium_johnsoniae_UW101
Processing: Isosphaera_pallida_ATCC_43644
Processing: Thermoanaerobacter_wiegelii_Rt8_B1
Processing: Nitrosococcus_watsonii_C-113
Processing: Enterococcus_casseliflavus_EC20
Processing: Capnocytophaga_canimorsus_Cc5
Processing: Sphingomonas_wittichii_RW1
Processing: Mycoplasma_arthritidis_158L3-1
Processing: Erwinia_pyrifoliae_Ep1_96
Processing: Helicobacter_cinaedi_PAGU611
Processing: Chloroflexus_aurantiacus_J-10-fl
Processing: Tropheryma_whipplei_str_Twist
Processing: Rhodobacter_capsulatus_SB_1003
Processing: Methylotenera_versatilis_301
Processing: Spirochaeta_thermophila_DSM_6578
Processing: Phaeobacter_gallaeciensis_2_10
Processing: Orientia_tsutsugamushi_str_Boryong
Processing: Leuconostoc_kimchii_IMSNU_11154
Processing: Liberibacter_crescens_BT-1
Processing: Castellaniella_defragrans_65Phen
Processing: Mycoplasma_crocodyli_MP145
Processing: Serratia_symbiotica_str_Cinara_cedri
Processing: Bibersteinia_trehalosi_USDA-ARS-USMARC-189
Processing: Treponema_azotonutricium_ZAS-9
Processing: Brucella_ceti_TE28753-12
Processing: Lactobacillus_amylovorus_GRL1118
Processing: Thermobaculum_terrenum_ATCC_BAA-798
Processing: Dehalogenimonas_lykanthroporepellens_BL-DC-9
Processing: Chloroherpeton_thalassium_ATCC_35110
Processing: Amycolatopsis_methanolica_239
Processing: Rhodospirillum_photometricum_DSM_122
Processing: Escherichia_albertii_KF1
Processing: Rickettsia_helvetica_C9P9
Processing: Anabaena_cylindrica_PCC_7122
Processing: Pantoea_ananatis_PA13
Processing: Serratia_liquefaciens_ATCC_27592
Processing: Burkholderia_cepacia_GG4
Processing: Staphylococcus_warneri_SG1
Processing: Micavibrio_aeruginosavorus_EPB
Processing: Syntrophothermus_lipocalidus_DSM_12680
Processing: Dactylococcopsis_salina_PCC_8305
Processing: Pseudomonas_syringae_pv_tomato_str_DC3000
Processing: Corynebacterium_argentoratense_DSM_44202
Processing: Desulfomonile_tiedjei_DSM_6799
Processing: Acinetobacter_oleivorans_DR1
Processing: Rickettsia_africae_ESF-5
Processing: Candidatus_Mycoplasma_haemolamae_str_Purdue
Processing: Alcanivorax_pacificus_W11-5
Processing: Brachyspira_hyodysenteriae_WA1
Processing: Bifidobacterium_indicum_LMG_11587_DSM_20214
Processing: Enterobacter_cloacae_subsp_cloacae_ATCC_13047
Processing: Mycobacterium_vanbaalenii_PYR-1
Processing: Clostridium_perfringens_str_13
Processing: Mycoplasma_yeatsii_GM274B
Processing: Rickettsia_massiliae_MTU5
Processing: Streptomyces_pratensis_ATCC_33331
Processing: Burkholderia_phymatum_STM815
Processing: Hirschia_baltica_ATCC_49814
Processing: Raoultella_ornithinolytica_B6
Processing: Mesorhizobium_ciceri_biovar_biserrulae_WSM1271
Processing: Lactobacillus_sanfranciscensis_TMW_1_1304
Processing: Rothia_mucilaginosa_DY-18
Processing: Geobacter_uraniireducens_Rf4
Processing: Listeria_seeligeri_serovar_1_2b_str_SLCC3954
Processing: Geobacillus_thermoglucosidasius_C56-YS93
Processing: Mycoplasma_genitalium_M6320
Processing: Rhizobium_etli_bv_phaseoli_str_IE4803
Processing: Haemophilus_parainfluenzae_T3T1
Processing: Nakamurella_multipartita_DSM_44233
Processing: Mycoplasma_bovis_HB0801
Processing: Chlorobium_luteolum_DSM_273
Processing: Sebaldella_termitidis_ATCC_33386
Processing: Rickettsia_philipii_str_364D
Processing: Mesoplasma_florum_L1
Processing: Rickettsia_canadensis_str_McKiel
Processing: Thermotoga_caldifontis_AZM44c09
Processing: Agrobacterium_vitis_S4
Processing: Actinobacillus_equuli_subsp_equuli
Processing: Spiroplasma_apis_B31
Processing: Treponema_pedis_str_T_A4
Processing: Eggerthella_lenta_DSM_2243
Processing: Bacillus_anthracis_str_H9401
Processing: Desulfotomaculum_ruminis_DSM_2154
Processing: Ehrlichia_ruminantium_str_Welgevonden
Processing: Corynebacterium_glycinophilum_AJ_3170
Processing: Streptococcus_thermophilus_LMG_18311
Processing: Acidaminococcus_intestini_RyC-MR95
Processing: _Clostridium_stercorarium_subsp_stercorarium_DSM_8532
Processing: Cyanobacterium_aponinum_PCC_10605
Processing: Paenibacillus_mucilaginosus_KNP414
Processing: Gloeobacter_kilaueensis_JS1
Processing: Chlamydia_muridarum_str_Nigg3_CMUT3-5
Processing: Cycloclasticus_zancles_7-ME
Processing: Aggregatibacter_aphrophilus_NJ8700
Processing: Paenibacillus_larvae_subsp_larvae_DSM_25430
Processing: Desulfitobacterium_metallireducens_DSM_15288
Processing: Streptosporangium_roseum_DSM_43021
Processing: Bacillus_cytotoxicus_NVH_391-98
Processing: Candidatus_Moranella_endobia_PCVAL
Processing: Pseudomonas_knackmussii_B13
Processing: Delftia_acidovorans_SPH-1
Processing: Rickettsia_conorii_str_Malish_7
Processing: Roseobacter_denitrificans_OCh_114
Processing: Pseudomonas_poae_RE*1-1-14
Processing: Pelagibacterium_halotolerans_B2
Processing: Candidatus_Hodgkinia_cicadicola_Dsem
Processing: Chromohalobacter_salexigens_DSM_3043
Processing: Thermobacillus_composti_KWC4
Processing: Bacillus_coagulans_DSM_1_ATCC_7050
Processing: Cellulophaga_baltica_NN016038
Processing: Marinomonas_mediterranea_MMB-1
Processing: Aster_yellows_witches-broom_phytoplasma_AYWB
Processing: Pleurocapsa_sp_PCC_7327
Processing: Pasteurella_multocida_subsp_multocida_str_HN06
Processing: Bifidobacterium_thermophilum_RBL67
Processing: Desulfosporosinus_meridiei_DSM_13257
Processing: Bartonella_vinsonii_subsp_berkhoffii_str_Winnie
Processing: Spiroplasma_mirum_ATCC_29335
Processing: Leuconostoc_carnosum_JB16
Processing: Saccharothrix_espanaensis_DSM_44229
Processing: Xanthobacter_autotrophicus_Py2
Processing: Mannheimia_succiniciproducens_MBEL55E
Processing: Tetragenococcus_halophilus_NBRC_12172
Processing: Rickettsia_australis_str_Cutlack
Processing: Mycoplasma_putrefaciens_KS1
Processing: Escherichia_fergusonii_ATCC_35469
Processing: Aminobacterium_colombiense_DSM_12261
Processing: Beijerinckia_indica_subsp_indica_ATCC_9039
Processing: Leptospira_borgpetersenii_serovar_Hardjo-bovis_str_L550
Processing: Bacillus_cereus_G9241
Processing: Sulfurimonas_gotlandica_GD1
Processing: Prosthecochloris_aestuarii_DSM_271
Processing: Candidatus_Blochmannia_chromaiodes_str_640
Processing: Gardnerella_vaginalis_ATCC_14019
Processing: Mycobacterium_neoaurum_VKM_Ac-1815D
Processing: Bacillus_pumilus_SAFR-032
Processing: Rhizobium_tropici_CIAT_899
Processing: Aerococcus_urinae_ACS-120-V-Col10a
Processing: Terriglobus_roseus_DSM_18391
Processing: Alcanivorax_dieselolei_B5
Processing: Caldanaerobacter_subterraneus_subsp_tengcongensis_MB4
Processing: Candidatus_Liberibacter_americanus_str_Sao_Paulo
Processing: Octadecabacter_arcticus_238
Processing: Kribbella_flavida_DSM_17836
Processing: Alkaliphilus_oremlandii_OhILAs
Processing: Cronobacter_turicensis_z3032
Processing: Weeksella_virosa_DSM_16922
Processing: Chlorobium_phaeobacteroides_DSM_266
Processing: Desulfocapsa_sulfexigens_DSM_10523
Processing: Persephonella_marina_EX-H1
Processing: cyanobacterium_endosymbiont_of_Epithemia_turgida_isolate_EtSB_Lake_Yunoko
Processing: Mycoplasma_agalactiae_PG2
Processing: Legionella_longbeachae_NSW150
Processing: Rubrobacter_xylanophilus_DSM_9941
Processing: Blastococcus_saxobsidens_DD2
Processing: Acidiphilium_cryptum_JF-5
Processing: Pseudomonas_resinovorans_NBRC_106553
Processing: Ehrlichia_muris_AS145
Processing: Lawsonia_intracellularis_N343
Processing: Clavibacter_michiganensis_subsp_sepedonicus
Processing: Halothiobacillus_neapolitanus_c2
Processing: Rhodopseudomonas_palustris_BisB5
Processing: Bifidobacterium_kashiwanohense_PV20-2
Processing: Desulfovibrio_vulgaris_str_Miyazaki_F
Processing: Mycoplasma_hyorhinis_SK76
Processing: Neorickettsia_risticii_str_Illinois
Processing: Zymomonas_mobilis_subsp_mobilis_NRRL_B-12526
Processing: Sulfurihydrogenibium_azorense_Az-Fu1
Processing: Deinococcus_peraridilitoris_DSM_19664
Processing: Desulfobacula_toluolica_Tol2
Processing: Candidatus_Kinetoplastibacterium_oncopeltii_TCC290E
Processing: Bacillus_infantis_NRRL_B-14911
Processing: Gloeobacter_violaceus_PCC_7421
Processing: Denitrovibrio_acetiphilus_DSM_12809
Processing: Mesorhizobium_loti_MAFF303099
Processing: Sulfurospirillum_deleyianum_DSM_6946
Processing: Thermosipho_africanus_TCF52B
Processing: Leuconostoc_mesenteroides_subsp_mesenteroides_J18
Processing: Polynucleobacter_necessarius_subsp_necessarius_STIR1
Processing: Aeromonas_salmonicida_subsp_salmonicida_A449
Processing: Xenorhabdus_bovienii_SS-2004
Processing: Roseobacter_litoralis_Och_149
Processing: Bartonella_tribocorum_CIP_105476
Processing: Pelodictyon_phaeoclathratiforme_BU-1
Processing: Catenulispora_acidiphila_DSM_44928
Processing: Flexibacter_litoralis_DSM_6794
Processing: Candidatus_Zinderia_insecticola_CARI
Processing: Corallococcus_coralloides_DSM_2259
Processing: Acinetobacter_calcoaceticus_PHEA-2
Processing: Haliscomenobacter_hydrossis_DSM_1100
Processing: Streptococcus_lutetiensis_033
Processing: Granulibacter_bethesdensis_CGDNIH4
Processing: Corynebacterium_halotolerans_YIM_70093_DSM_44683
Processing: Caulobacter_crescentus_NA1000
Processing: Thermomonospora_curvata_DSM_43183
Processing: Methylobacterium_extorquens_AM1
Processing: Staphylococcus_aureus_subsp_aureus_T0131
Processing: Enterobacter_asburiae_LF7a
Processing: Pelotomaculum_thermopropionicum_SI
Processing: Deinococcus_radiodurans_R1
Processing: Nocardiopsis_alba_ATCC_BAA-2165
Processing: Chitinophaga_pinensis_DSM_2588
Processing: Streptococcus_equi_subsp_zooepidemicus
Processing: Calothrix_sp_PCC_6303
Processing: Planctomyces_brasiliensis_DSM_5305
Processing: Cellulomonas_fimi_ATCC_484
Processing: Corynebacterium_glutamicum_ATCC_13032
Processing: Marinithermus_hydrothermalis_DSM_14884
Processing: Clostridium_acetobutylicum_DSM_1731
Processing: Dickeya_zeae_EC1
Processing: Acetobacterium_woodii_DSM_1030
Processing: Thermoanaerobacterium_xylanolyticum_LX-11
Processing: Thermincola_potens_JR
Processing: Burkholderia_rhizoxinica_HKI_454
Processing: Symbiobacterium_thermophilum_IAM_14863
Processing: Acidaminococcus_fermentans_DSM_20731
Processing: Bacillus_pseudofirmus_OF4
Processing: Rhizobium_leguminosarum_bv_trifolii_WSM2304
Processing: Sinorhizobium_medicae_WSM419
Processing: Lactobacillus_casei_subsp_casei_ATCC_393
Processing: Pseudomonas_fulva_12-X
Processing: Robiginitalea_biformata_HTCC2501
Processing: Candidatus_Riesia_pediculicola_USDA
Processing: Acinetobacter_baumannii_BJAB07104
Processing: Staphylococcus_pasteuri_SP1
Processing: Candidatus_Symbiobacter_mobilis_CR
Processing: Desulfococcus_oleovorans_Hxd3
Processing: Corynebacterium_maris_DSM_45190
Processing: Sphaerobacter_thermophilus_DSM_20745
Processing: Pseudomonas_entomophila_L48
Processing: Sphaerochaeta_coccoides_DSM_17374
Processing: Mycoplasma_leachii_PG50
Processing: Gramella_forsetii_KT0803
Processing: Candidatus_Arthromitus_sp_SFB-mouse-Yit
Processing: Cyanobium_gracile_PCC_6307
Processing: Actinobacillus_pleuropneumoniae_serovar_5b_str_L20
Processing: Desulfovibrio_magneticus_RS-1
Processing: Elusimicrobium_minutum_Pei191
Processing: Burkholderia_xenovorans_LB400
Processing: Anaerococcus_prevotii_DSM_20548
Processing: Chlamydophila_pneumoniae_CWL029
Processing: Exiguobacterium_sibiricum_255-15
Processing: Arthrobacter_chlorophenolicus_A6
Processing: Streptococcus_sanguinis_SK36
Processing: Spiribacter_salinus_M19-40
Processing: Streptomyces_lividans_TK24
Processing: Crinalium_epipsammum_PCC_9333
Processing: Mycoplasma_bovoculi_M165_69
Processing: Marinomonas_posidonica_IVIA-Po-181
Processing: Ferrimonas_balearica_DSM_9799
Processing: Nautilia_profundicola_AmH
Processing: Mycoplasma_wenyonii_str_Massachusetts
Processing: Caldicellulosiruptor_lactoaceticus_6A
Processing: Rickettsia_typhi_str_TH1527
Processing: Oscillibacter_valericigenes_Sjm18-20
Processing: Thioalkalimicrobium_cyclicum_ALM1
Processing: Kytococcus_sedentarius_DSM_20547
Processing: Vibrio_alginolyticus_NBRC_15630_ATCC_17749
Processing: Shewanella_loihica_PV-4
Processing: Candidatus_Azobacteroides_pseudotrichonymphae_genomovar_CFP2
Processing: Borrelia_afzelii_Tom3107
Processing: Fimbriimonas_ginsengisoli_Gsoil_348
Processing: Brucella_ovis_ATCC_25840
Processing: Bradyrhizobium_japonicum_USDA_6
Processing: Chlamydophila_felis_Fe_C-56
Processing: Mycobacterium_gilvum_PYR-GCK
Processing: Brachyspira_murdochii_DSM_12563
Processing: Thermus_thermophilus_HB8
Processing: Brucella_melitensis_ATCC_23457
Processing: Waddlia_chondrophila_WSU_86-1044
Processing: Maricaulis_maris_MCS10
Processing: Candidatus_Endolissoclinum_faulkneri_L2
Processing: Streptococcus_uberis_0140J
Processing: Dehalococcoides_mccartyi_CG5
Processing: Deinococcus_proteolyticus_MRP
Processing: Rickettsia_rhipicephali_str_3-7-female6-CWPP
Processing: Desulfobulbus_propionicus_DSM_2032
Processing: Enterococcus_mundtii_QU_25
Processing: Myxococcus_fulvus_HW-1
Processing: Ammonifex_degensii_KC4
Processing: Bacteroides_vulgatus_ATCC_8482
Processing: _Cellvibrio_gilvus_ATCC_13127
Processing: Streptococcus_infantarius_subsp_infantarius_CJ18
Processing: Klebsiella_variicola_At-22
Processing: Shewanella_putrefaciens_200
Processing: _Clostridium_clariflavum_DSM_19732
Processing: Thioalkalivibrio_nitratireducens_DSM_14787
Processing: Helicobacter_pylori_F16
Processing: Paracoccus_aminophilus_JCM_7686
Processing: Leuconostoc_gelidum_JB7
Processing: Acetohalobium_arabaticum_DSM_5501
Processing: Pediococcus_claussenii_ATCC_BAA-344
Processing: Variovorax_paradoxus_EPS
Processing: Aromatoleum_aromaticum_EbN1
Processing: _Clostridium_acidurici_9a
Processing: Psychromonas_ingrahamii_37
Processing: Synechococcus_elongatus_PCC_7942
Processing: Bacillus_megaterium_NBRC_15308_ATCC_14581
Processing: Thioflavicoccus_mobilis_8321
Processing: Serratia_proteamaculans_568
Processing: Frankia_alni_ACN14a
Processing: Gordonia_bronchialis_DSM_43247
Processing: Rhodobacter_sphaeroides_2_4_1
Processing: Yersinia_aldovae_670-83
Processing: Terriglobus_saanensis_SP1PR4
Processing: Nocardia_cyriacigeorgica_GUH-2
Processing: Wolbachia_endosymbiont_of_Drosophila_simulans_wHa
Processing: Turneriella_parva_DSM_21527
Processing: Candidatus_Portiera_aleyrodidarum_MED_Bemisia_tabaci
Processing: Streptomyces_cattleya_NRRL_8057_DSM_46488
Processing: Ochrobactrum_anthropi_ATCC_49188
Processing: Aliivibrio_salmonicida_LFI1238
Processing: Leptospira_interrogans_serovar_Copenhageni_str_Fiocruz_L1-130
Processing: Cellulomonas_flavigena_DSM_20109
Processing: Borrelia_garinii_SZ
Processing: Mycobacterium_yongonense_05-1390
Processing: Rickettsia_peacockii_str_Rustic
Processing: Shewanella_halifaxensis_HAW-EB4
Processing: Haemophilus_parasuis_ZJ0906
Processing: Corynebacterium_variabile_DSM_44702
Processing: Burkholderia_ambifaria_AMMD
Processing: Nitrosomonas_europaea_ATCC_19718
Processing: Xanthomonas_axonopodis_pv_citrumelo_F1
Processing: Solibacillus_silvestris_StLB046
Processing: Desulfotalea_psychrophila_LSv54
Processing: Enterococcus_hirae_ATCC_9790
Processing: Edwardsiella_ictaluri_93-146
Processing: Roseibacterium_elongatum_DSM_19469
Processing: Mycobacterium_marinum_M
Processing: Blattabacterium_sp_Panesthia_angustipennis_spadica_str_BPAA
Processing: Synechocystis_sp_PCC_6803_substr_PCC-P
Processing: Lactobacillus_acidophilus_NCFM
Processing: Butyrivibrio_proteoclasticus_B316
Processing: Bartonella_henselae_str_Houston-1
Processing: Campylobacter_insulaenigrae_NCTC_12927
Processing: Mycobacterium_rhodesiae_NBB3
Processing: Saccharophagus_degradans_2-40
Processing: Glaciecola_nitratireducens_FR1064
Processing: Basilea_psittacipulmonis_DSM_24701
Processing: Desulfosporosinus_orientis_DSM_765
Processing: Streptomyces_fulvissimus_DSM_40593
Processing: Listeria_ivanovii_subsp_ivanovii
Processing: Tannerella_forsythia_ATCC_43037
Processing: Prochlorococcus_marinus_str_MIT_9313
Processing: Dehalobacter_restrictus_DSM_9455
Processing: Borrelia_duttonii_Ly
Processing: Pseudomonas_mendocina_NK-01
Processing: Mycobacterium_ulcerans_Agy99
Processing: Arcobacter_butzleri_7h1h
Processing: Candidatus_Desulforudis_audaxviator_MP104C
Processing: Neisseria_gonorrhoeae_FA_1090
Processing: Gallibacterium_anatis_UMN179
Processing: Nocardia_nova_SH22a
Processing: Desulfotomaculum_carboxydivorans_CO-1-SRB
Processing: Verrucomicrobium_spinosum_DSM_4136_JCM_18804
Processing: Kutzneria_albida_DSM_43870
Processing: Thermoanaerobacter_mathranii_subsp_mathranii_str_A3
Processing: Mycoplasma_haemofelis_str_Langford_1
Processing: _Bacillus_selenitireducens_MLS10
Processing: Streptomyces_scabiei_87_22
Processing: Thioalkalivibrio_sulfidiphilus_HL-EbGr7
Processing: Cardinium_endosymbiont_cEper1_of_Encarsia_pergandiella
Processing: Fluviicola_taffensis_DSM_16823
Processing: Pandoraea_pnomenusa_3kgm
Processing: Xanthomonas_campestris_pv_vesicatoria_str_85-10
Processing: Enterobacter_lignolyticus_SCF1
Processing: Cupriavidus_metallidurans_CH34
Processing: Chlorobium_phaeovibrioides_DSM_265
Processing: Hahella_chejuensis_KCTC_2396
Processing: Alkaliphilus_metalliredigens_QYMF
Processing: Burkholderia_glumae_BGR1
Processing: Nitrosomonas_eutropha_C91
Processing: Rickettsia_slovaca_str_D-CWPP
Processing: Streptomyces_collinus_Tu_365
Processing: Alicyclobacillus_acidocaldarius_subsp_acidocaldarius_DSM_446
Processing: Amycolatopsis_mediterranei_S699
Processing: Bacillus_methanolicus_MGA3
Processing: Sulfuritalea_hydrogenivorans_sk43H
Processing: Thermoanaerobacter_pseudethanolicus_ATCC_33223
Processing: Methylocella_silvestris_BL2
Processing: Xanthomonas_axonopodis_pv_citri_str_306
Processing: Thermus_scotoductus_SA-01
Processing: Muricauda_ruestringensis_DSM_13258
Processing: Geobacter_lovleyi_SZ
Processing: Bacillus_subtilis_PY79
Processing: Thermobifida_fusca_YX
Processing: Methylobacterium_radiotolerans_JCM_2831
Processing: Mycobacterium_chubuense_NBB4
Processing: Flexistipes_sinusarabici_DSM_4947
Processing: Salinispora_arenicola_CNS-205
Processing: Propionibacterium_avidum_44067
Processing: Thermosediminibacter_oceani_DSM_16646
Processing: Prevotella_ruminicola_23
Processing: Dickeya_dadantii_3937
Processing: Ruegeria_pomeroyi_DSS-3
Processing: Bifidobacterium_longum_DJO10A
Processing: Sulfurospirillum_multivorans_DSM_12446
Processing: Sulfobacillus_acidophilus_DSM_10332
Processing: Rhizobium_gallicum_bv_gallicum_R602
Processing: Flavobacterium_psychrophilum_JIP02_86
Processing: Rahnella_aquatilis_HX2
Processing: Bacillus_weihenstephanensis_KBAB4
Processing: Streptomyces_griseus_subsp_griseus_NBRC_13350
Processing: Yersinia_enterocolitica_subsp_palearctica_105_5R_r
Processing: Shewanella_baltica_OS117
Processing: Kineococcus_radiotolerans_SRS30216_ATCC_BAA-149
Processing: Xanthomonas_oryzae_pv_oryzae_PXO99A
Processing: Clostridium_botulinum_202F
Processing: Mycoplasma_ovis_str_Michigan
Processing: Bradyrhizobium_diazoefficiens_USDA_110
Processing: Sanguibacter_keddieii_DSM_10542
Processing: Pseudomonas_protegens_Pf-5
Processing: Parabacteroides_distasonis_ATCC_8503
Processing: Hafnia_alvei_FB1
Processing: Serratia_fonticola_RB-25
Processing: Gemmatimonas_aurantiaca_T-27
Processing: Chroococcidiopsis_thermalis_PCC_7203
Processing: Lactobacillus_buchneri_NRRL_B-30929
Processing: Candidatus_Ishikawaella_capsulata_Mpkobe
Processing: Sodalis_glossinidius_str_morsitans
Processing: Truepera_radiovictrix_DSM_17093
Processing: Solitalea_canadensis_DSM_3403
Processing: Thermosipho_melanesiensis_BI429
Processing: Mycobacterium_liflandii_128FXT
Processing: Proteus_mirabilis_BB2000
Processing: Bartonella_australis_Aust_NH1
Processing: Desulfovibrio_desulfuricans_subsp_desulfuricans_str_ATCC_27774
Processing: Deinococcus_maricopensis_DSM_21211
Processing: Geobacter_daltonii_FRC-32
Processing: Bacillus_clausii_KSM-K16
Processing: Mycoplasma_flocculare_ATCC_27399
Processing: Streptococcus_gallolyticus_UCN34
Processing: Campylobacter_coli_RM1875
Processing: Pectobacterium_carotovorum_subsp_odoriferum
Processing: Cellulophaga_lytica_DSM_7489
Processing: Psychrobacter_arcticus_273-4
Processing: Salinispora_tropica_CNB-440
Processing: Deferribacter_desulfuricans_SSM1
Processing: Kosakonia_sacchari_SP1
Processing: Lactobacillus_delbrueckii_subsp_bulgaricus_2038
Processing: Acidovorax_citrulli_AAC00-1
Processing: Bacillus_halodurans_C-125
Processing: Chlamydia_psittaci_MN
Processing: Melissococcus_plutonius_DAT561
Processing: Rickettsia_japonica_YH
Processing: Agrobacterium_fabrum_str_C58
Processing: Rickettsia_prowazekii_str_GvV257
Processing: Staphylococcus_haemolyticus_JCSC1435
Processing: Microbacterium_testaceum_StLB037
Processing: Mesorhizobium_opportunistum_WSM2075
Processing: Lactobacillus_plantarum_ZJ316
Processing: Rickettsia_parkeri_str_Portsmouth
Processing: Octadecabacter_antarcticus_307
Processing: Providencia_stuartii_MRSN_2154
Processing: Phycisphaera_mikurensis_NBRC_102666
Processing: Cellulophaga_algicola_DSM_14237
Processing: Erwinia_amylovora_LA636
Processing: Pantoea_vagans_C9-1
Processing: Shigella_boydii_Sb227
Processing: Intrasporangium_calvum_DSM_43043
Processing: Pseudoxanthomonas_spadix_BD-a59
Processing: Anaerobaculum_mobile_DSM_13181
Processing: Peptoclostridium_difficile_BI1
Processing: Staphylococcus_saprophyticus_subsp_saprophyticus_ATCC_15305
Processing: Sinorhizobium_meliloti_AK83
Processing: Petrotoga_mobilis_SJ95
Processing: Arcanobacterium_haemolyticum_DSM_20595
Processing: Actinobacillus_succinogenes_130Z
Processing: Lactobacillus_sakei_subsp_sakei_23K
Processing: Listonella_anguillarum_M3
Processing: Geobacter_sulfurreducens_KN400
Processing: Amycolatopsis_orientalis_HCCB10007
Processing: Bordetella_avium_197N
Processing: Leifsonia_xyli_subsp_cynodontis_DSM_46306
Processing: Wolbachia_endosymbiont_wPip_Mol_of_Culex_molestus
Processing: Carboxydothermus_hydrogenoformans_Z-2901
Processing: Acaryochloris_marina_MBIC11017
Processing: Shewanella_amazonensis_SB2B
Processing: Chlorobium_tepidum_TLS
Processing: Corynebacterium_casei_LMG_S-19264
Processing: Stanieria_cyanosphaera_PCC_7437
Processing: Oceanithermus_profundus_DSM_14977
Processing: Streptococcus_parauberis_NCFD_2020
Processing: Paludibacter_propionicigenes_WB4
Processing: Corynebacterium_aurimucosum_ATCC_700975
Processing: Ehrlichia_chaffeensis_str_West_Paces
Processing: Bradyrhizobium_oligotrophicum_S58
Processing: Brucella_microti_CCM_4915
Processing: Pseudomonas_balearica_DSM_6083
Processing: Geobacillus_thermoleovorans_CCB_US3_UF5
Processing: Herbaspirillum_seropedicae_SmR1
Processing: Sorangium_cellulosum_So_ce56
Processing: Mycobacterium_indicus_pranii_MTCC_9506
Processing: Helicobacter_acinonychis_str_Sheeba
Processing: Vibrio_furnissii_NCTC_11218
Processing: Ralstonia_pickettii_12J
Processing: Desulfurella_acetivorans_A63
Processing: Marinobacter_adhaerens_HP15
Processing: Candidatus_Hepatoplasma_crinochetorum_Av
Processing: Spiroplasma_chrysopicola_DF-1
Processing: Candidatus_Pelagibacter_ubique_HTCC1062
Processing: Erythrobacter_litoralis_HTCC2594
Processing: Erwinia_tasmaniensis_Et1_99
Processing: Ralstonia_eutropha_H16
Processing: Thermotoga_maritima_MSB8
Processing: Spirosoma_linguale_DSM_74
Processing: Ethanoligenens_harbinense_YUAN-3
Processing: Lactococcus_lactis_subsp_cremoris_UC509_9
Processing: Simiduia_agarivorans_SA1_DSM_21679
Processing: Jonesia_denitrificans_DSM_20603
Processing: Streptococcus_dysgalactiae_subsp_equisimilis_167
Processing: Desulfosporosinus_acidiphilus_SJ4
Processing: Streptobacillus_moniliformis_DSM_12112
Processing: Mycobacterium_avium_subsp_avium_2285_R
Processing: Allochromatium_vinosum_DSM_180
Processing: Bifidobacterium_breve_689b
Processing: Bacteroides_helcogenes_P_36-108
Processing: Kosmotoga_olearia_TBF_19_5_1
Processing: Paenibacillus_terrae_HPL-003
Processing: Halothermothrix_orenii_H_168
Processing: Spirochaeta_smaragdinae_DSM_11293
Processing: Simkania_negevensis_Z
Processing: Borrelia_bissettii_DN127
Processing: Thermus_oshimai_JL-2
Processing: Erwinia_billingiae_Eb661
Processing: Nitratifractor_salsuginis_DSM_16511
Processing: Burkholderia_pseudomallei_BPC006
Processing: Slackia_heliotrinireducens_DSM_20476
Processing: Neisseria_lactamica_020-06
Processing: Hippea_maritima_DSM_10411
Processing: Granulicella_tundricola_MP5ACTX9
Processing: Desulfitobacterium_hafniense_DCB-2
Processing: Paenibacillus_polymyxa_CR1
Processing: Thermodesulfovibrio_yellowstonii_DSM_11347
Processing: Streptococcus_intermedius_JTH08
Processing: Candidatus_Kinetoplastibacterium_desouzaii_TCC079E
Processing: Streptococcus_salivarius_JIM8777
Processing: Akkermansia_muciniphila_ATCC_BAA-835
Processing: Corynebacterium_humireducens_NBRC_106098_DSM_45392
Processing: Xylanimonas_cellulosilytica_DSM_15894
Processing: Marinobacter_hydrocarbonoclasticus_ATCC_49840
Processing: Helicobacter_mustelae_12198
Processing: Bordetella_holmesii_44057
Processing: Methylomonas_methanica_MC09
Processing: Helicobacter_hepaticus_ATCC_51449
Processing: Tolumonas_auensis_DSM_9187
Processing: Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi
Processing: Thermotoga_hypogea_NBRC_106472
Processing: Psychrobacter_cryohalolentis_K5
Processing: Lactobacillus_helveticus_H10
Processing: Sulfurimonas_denitrificans_DSM_1251
Processing: Flavobacterium_indicum_GPTSA100-9_DSM_17447
Processing: Lactobacillus_brevis_ATCC_367
Processing: Candidatus_Blochmannia_pennsylvanicus_str_BPEN
Processing: Onion_yellows_phytoplasma_OY-M
Processing: Wigglesworthia_glossinidia_endosymbiont_of_Glossina_brevipalpis
Processing: Rickettsia_felis_URRWXCal2
Processing: Baumannia_cicadellinicola_str_Hc_Homalodisca_coagulata
Processing: Streptococcus_suis_6407
Processing: Brevundimonas_subvibrioides_ATCC_15264
Processing: Sinorhizobium_fredii_NGR234
Processing: Streptococcus_mitis_B6
Processing: Francisella_noatunensis_subsp_orientalis_str_Toba_04
Processing: Lysinibacillus_sphaericus_C3-41
Processing: Alcanivorax_borkumensis_SK2
Processing: Clostridium_novyi_NT
Processing: Oligotropha_carboxidovorans_OM4
Processing: Bacteroides_fragilis_638R
Processing: Thiomonas_intermedia_K12
Processing: Desulfotomaculum_reducens_MI-1
Processing: Streptococcus_pyogenes_NZ131
Processing: Aeromonas_hydrophila_AL09-71
Processing: Cytophaga_hutchinsonii_ATCC_33406
Processing: Candidatus_Sodalis_pierantonius_str_SOPE
Processing: Candidatus_Amoebophilus_asiaticus_5a2
Processing: Micromonospora_aurantiaca_ATCC_27029
Processing: Brucella_abortus_S19
Processing: Clostridium_tetani_E88
Processing: Chlamydophila_abortus_S26_3
Processing: Salinibacter_ruber_DSM_13855
Processing: Anoxybacillus_flavithermus_WK1
Processing: Mycobacterium_tuberculosis_str_Beijing_NITR203
Processing: Hydrogenobacter_thermophilus_TK-6
Processing: Snodgrassella_alvi_wkB2
Processing: Candidatus_Puniceispirillum_marinum_IMCC1322
Processing: Gluconobacter_oxydans_DSM_3504
Processing: Heliobacterium_modesticaldum_Ice1
Processing: Corynebacterium_doosanense_CAU_212_DSM_45436
Processing: Candidatus_Atelocyanobacterium_thalassa_isolate_ALOHA
Processing: Borrelia_recurrentis_A1
Processing: Haemophilus_ducreyi_35000HP
Processing: Rickettsia_heilongjiangensis_054
Processing: Paracoccus_denitrificans_PD1222
Processing: Desulfotomaculum_acetoxidans_DSM_771
Processing: Taylorella_equigenitalis_MCE9
Processing: Mycobacterium_leprae_Br4923
Processing: Burkholderia_vietnamiensis_G4
Processing: Aeromonas_media_WS
Processing: Actinoplanes_friuliensis_DSM_7358
Processing: Sphingopyxis_alaskensis_RB2256
Processing: Sphingobium_chlorophenolicum_L-1
Processing: Campylobacter_concisus_13826
Processing: Treponema_succinifaciens_DSM_2489
Processing: Campylobacter_fetus_subsp_venerealis_cfvi03_293
Processing: Thermoanaerobacter_italicus_Ab9
Processing: Treponema_denticola_ATCC_35405
Processing: Acidithiobacillus_caldus_ATCC_51756
Processing: Shewanella_woodyi_ATCC_51908
Processing: Syntrophus_aciditrophicus_SB
Processing: Nitrosococcus_halophilus_Nc_4
Processing: Achromobacter_xylosoxidans_A8
Processing: Lactobacillus_reuteri_SD2112
Processing: Sphingobium_japonicum_UT26S
Processing: Eubacterium_rectale_ATCC_33656
Processing: Candidatus_Blochmannia_vafer_str_BVAF
Processing: Shimwellia_blattae_DSM_4481_NBRC_105725
Processing: Mahella_australiensis_50-1_BON
Processing: Alicycliphilus_denitrificans_BC
Processing: Kyrpidia_tusciae_DSM_2912
Processing: Flavobacterium_columnare_ATCC_49512
Processing: Dictyoglomus_turgidum_DSM_6724
Processing: Laribacter_hongkongensis_HLHK9
Processing: Streptococcus_mutans_NN2025
Processing: Salmonella_enterica_subsp_enterica_serovar_Heidelberg_str_CFSAN002069
Processing: Spiroplasma_syrphidicola_EA-1
Processing: Comamonas_testosteroni_TK102
Processing: Campylobacter_hominis_ATCC_BAA-381
Processing: Coraliomargarita_akajimensis_DSM_45221
Processing: Shewanella_frigidimarina_NCIMB_400
Processing: Streptococcus_parasanguinis_ATCC_15912
Processing: Lactobacillus_johnsonii_DPC_6026
Processing: _Eubacterium_eligens_ATCC_27750
Processing: Ilyobacter_polytropus_DSM_2926
Processing: Streptococcus_iniae_SF1
Processing: Thioalkalimicrobium_aerophilum_AL3
Processing: Clostridium_lentocellum_DSM_5427
Processing: Thermoanaerobacterium_thermosaccharolyticum_M0795
Processing: Odoribacter_splanchnicus_DSM_20712
Processing: Methylococcus_capsulatus_str_Bath
Processing: Novosphingobium_aromaticivorans_DSM_12444
Processing: Aquifex_aeolicus_VF5
Processing: Aeromonas_veronii_B565
Processing: Halobacteroides_halobius_DSM_5150
Processing: Advenella_mimigardefordensis_DPN7
Processing: Renibacterium_salmoninarum_ATCC_33209
Processing: Porphyromonas_asaccharolytica_DSM_20707
Processing: Fervidobacterium_nodosum_Rt17-B1
Processing: Kangiella_koreensis_DSM_16069
Processing: Pirellula_staleyi_DSM_6068
Processing: Micrococcus_luteus_NCTC_2665
Processing: Mycobacterium_kansasii_ATCC_12478
Processing: Shewanella_violacea_DSS12
Processing: Streptococcus_pasteurianus_ATCC_43144
Processing: Campylobacter_jejuni_subsp_jejuni_M1
Processing: Burkholderia_cenocepacia_HI2424
Processing: Nocardia_brasiliensis_ATCC_700358
Processing: Chlamydia_pecorum_P787
Processing: Syntrophobotulus_glycolicus_DSM_8271
Processing: Streptomyces_avermitilis_MA-4680_NBRC_14893
Processing: Corynebacterium_resistens_DSM_45100
Processing: Mycoplasma_synoviae_53
Processing: Planktomarina_temperata_RCA23
Processing: Carnobacterium_maltaromaticum_LMA28
Processing: Syntrophobacter_fumaroxidans_MPOB
Processing: Dechlorosoma_suillum_PS
Processing: Klebsiella_oxytoca_E718
Processing: Filifactor_alocis_ATCC_35896
Processing: Thermacetogenium_phaeum_DSM_12270
Processing: Lactobacillus_kefiranofaciens_ZW3
Processing: Prevotella_dentalis_DSM_3688
Processing: Magnetococcus_marinus_MC-1
Processing: Rhodococcus_equi_103S
Processing: Rickettsia_bellii_RML369-C
Processing: Blattabacterium_sp_Mastotermes_darwiniensis_str_MADAR
Processing: Streptococcus_constellatus_subsp_pharyngis_C232
Processing: Shewanella_pealeana_ATCC_700345
Processing: Rhodospirillum_rubrum_F11
Processing: Planctomyces_limnophilus_DSM_3776
Processing: Acholeplasma_laidlawii_PG-8A
Processing: Prevotella_melaninogenica_ATCC_25845
Processing: Myxococcus_stipitatus_DSM_14675
Processing: Coxiella_burnetii_Dugway_5J108-111
Processing: Pseudomonas_monteilii_SB3101
Processing: Candidatus_Liberibacter_asiaticus_str_Ishi-1
Processing: Mycobacterium_intracellulare_1956
Processing: Thermomicrobium_roseum_DSM_5159
Processing: Helicobacter_felis_ATCC_49179
Processing: Blattabacterium_sp_Cryptocercus_punctulatus_str_Cpu
Processing: Bartonella_bacilliformis_KC583
Processing: Thalassolituus_oleivorans_MIL-1
Processing: Enterococcus_faecium_NRRL_B-2354
Processing: Methylotenera_mobilis_JLW8
Processing: Streptococcus_oralis_Uo5
Processing: Amycolicicoccus_subflavus_DQS3-9A1
Processing: Deinococcus_gobiensis_I-0
Processing: Rhodoferax_ferrireducens_T118
Processing: Bordetella_parapertussis_Bpp5
Processing: Thermovibrio_ammonificans_HB-1
Processing: Corynebacterium_jeikeium_K411
Processing: Pectobacterium_atrosepticum_SCRI1043
Processing: Lachnoclostridium_phytofermentans_ISDg
Processing: Idiomarina_loihiensis_GSL_199
Processing: Pediococcus_pentosaceus_ATCC_25745
Processing: Meiothermus_silvanus_DSM_9946
Processing: Verminephrobacter_eiseniae_EF01-2
Processing: Xanthomonas_campestris_pv_raphani_756C
Processing: Magnetospirillum_magneticum_AMB-1
Processing: Burkholderia_thailandensis_2002721723
Processing: Staphylococcus_carnosus_subsp_carnosus_TM300
Processing: Acetobacter_pasteurianus_IFO_3283-12
Processing: Mycoplasma_pneumoniae_309
Processing: Sulfurospirillum_barnesii_SES-3
Processing: Chlorobium_limicola_DSM_245
Processing: Strawberry_lethal_yellows_phytoplasma_CPA_str_NZSb11
Processing: Taylorella_asinigenitalis_MCE3
Processing: Pseudomonas_cichorii_JBC1
Processing: Vibrio_fischeri_ES114
Processing: Nitrobacter_winogradskyi_Nb-255
Processing: Thermanaerovibrio_acidaminovorans_DSM_6589
Processing: Myxococcus_xanthus_DK_1622
Processing: Sphaerochaeta_globosa_str_Buddy
Processing: Desulfatibacillum_alkenivorans_AK-01
Processing: Thiobacillus_denitrificans_ATCC_25259
Processing: Selenomonas_ruminantium_subsp_lactilytica_TAM6421
Processing: Calditerrivibrio_nitroreducens_DSM_19672
Processing: Chlamydia_avium_10DC88
Processing: Trichodesmium_erythraeum_IMS101
Processing: Neorickettsia_helminthoeca_str_Oregon
Processing: Yersinia_pseudotuberculosis_YPIII
Processing: Nonlabens_dokdonensis_DSW-6
Processing: Pseudoalteromonas_atlantica_T6c
Processing: Chlamydia_trachomatis_L3_404_LN
Processing: Chlorobium_chlorochromatii_CaD3
Processing: Geobacillus_thermodenitrificans_NG80-2
Processing: Candidatus_Sulcia_muelleri_PSPU
Processing: Spiroplasma_culicicola_AES-1
Processing: Shigella_dysenteriae_Sd197
Processing: Streptomyces_albus_J1074
Processing: Ureaplasma_parvum_serovar_3_str_ATCC_700970
Processing: Pelobacter_propionicus_DSM_2379
Processing: Thermaerobacter_marianensis_DSM_12885
Processing: Brachybacterium_faecium_DSM_4810
Processing: Rhodospirillum_centenum_SW
Processing: Fervidobacterium_pennivorans_DSM_9078
Processing: Geodermatophilus_obscurus_DSM_43160
Processing: Phenylobacterium_zucineum_HLK1
Processing: Bacillus_bombysepticus_str_Wang
Processing: Clostridium_cellulovorans_743B
Processing: Adlercreutzia_equolifaciens_DSM_19450
Processing: Azorhizobium_caulinodans_ORS_571
Processing: Citrobacter_rodentium_ICC168
Processing: Acidovorax_ebreus_TPSY
Processing: Bdellovibrio_exovorus_JSS
Processing: Azotobacter_vinelandii_CA6
Processing: Campylobacter_peloridis_LMG_23910
Processing: Edwardsiella_tarda_FL6-60
Processing: Halanaerobium_praevalens_DSM_2228
Processing: Sulfurimonas_autotrophica_DSM_16294
Processing: Rubrivivax_gelatinosus_IL144
Processing: Thermoanaerobacterium_saccharolyticum_JW_SL-YS485
Processing: Stenotrophomonas_maltophilia_R551-3
Processing: Oenococcus_kitaharae_DSM_17330
Processing: Desulfurivibrio_alkaliphilus_AHT2
Processing: Conexibacter_woesei_DSM_14684
Processing: Borrelia_parkeri_HR1
Processing: Bacillus_atrophaeus_1942
Processing: Brucella_canis_HSK_A52141
Processing: Thermodesulfobacterium_commune_DSM_2178
Processing: Lactobacillus_salivarius_CECT_5713
Processing: Xylella_fastidiosa_subsp_fastidiosa_GB514
Processing: Roseburia_hominis_A2-183
Processing: Ralstonia_eutropha_JMP134
Processing: Thioalkalivibrio_thiocyanoxidans_ARh_4
Processing: Mycoplasma_hominis_ATCC_23114
Processing: Fibrobacter_succinogenes_subsp_succinogenes_S85
Processing: Rhodococcus_erythropolis_PR4
Processing: Acidothermus_cellulolyticus_11B
Processing: Amphibacillus_xylanus_NBRC_15112
Processing: Desulfovibrio_aespoeensis_Aspo-2
Processing: Sulfuricurvum_kujiense_DSM_16994
Processing: Granulicella_mallensis_MP5ACTX8
Processing: Komagataeibacter_medellinensis_NBRC_3288
Processing: Citrobacter_freundii_CFNIH1
Processing: Haliangium_ochraceum_DSM_14365
Processing: Selenomonas_sputigena_ATCC_35185
Processing: Niastella_koreensis_GR20-10
Processing: Nitrosospira_multiformis_ATCC_25196
Processing: Saprospira_grandis_str_Lewin
Processing: Atopobium_parvulum_DSM_20469
Processing: Streptococcus_gordonii_str_Challis_substr_CH1
Processing: Clostridium_saccharoperbutylacetonicum_N1-4_HMT
Processing: Opitutus_terrae_PB90-1
Processing: Methylobacillus_flagellatus_KT
Processing: Prevotella_denticola_F0289
Processing: Arthrobacter_aurescens_TC1
Processing: Candidatus_Tremblaya_phenacola_PAVE
Processing: Treponema_pallidum_subsp_pallidum_str_Sea_81-4
Processing: Trueperella_pyogenes_TP8
Processing: Bifidobacterium_pseudolongum_PV8-2
Processing: Mannheimia_haemolytica_USDA-ARS-USMARC-185
Processing: Candidatus_Liberibacter_solanacearum_CLso-ZC1
Processing: Acidobacterium_capsulatum_ATCC_51196
Processing: Candidatus_Cloacimonas_acidaminovorans_str_Evry
Processing: Pseudoalteromonas_haloplanktis_TAC125
Processing: Mycoplasma_gallisepticum_str_F
Processing: Caldicellulosiruptor_saccharolyticus_DSM_8903
Processing: Stackebrandtia_nassauensis_DSM_44728
Processing: Syntrophomonas_wolfei_subsp_wolfei_str_Goettingen_G311
Processing: Acidithiobacillus_ferrivorans_SS3
Processing: Treponema_caldaria_DSM_7334
Processing: Pectobacterium_wasabiae_WPP163
Processing: Mycoplasma_californicum_HAZ160_1
Processing: Methylobacterium_populi_BJ001
Processing: Thiomicrospira_crunogena_XCL-2
Processing: Serratia_marcescens_subsp_marcescens_Db11
Processing: Thermodesulfobacterium_geofontis_OPF15
Processing: Mycoplasma_penetrans_HF-2
Processing: Agrobacterium_radiobacter_K84
Processing: _Clostridium_saccharolyticum_WM1
Processing: Staphylococcus_pseudintermedius_ED99
Processing: Xanthomonas_albilineans_GPE_PC73
Processing: Desulfovibrio_alaskensis_G20
Processing: Vibrio_campbellii_ATCC_BAA-1116
Processing: Asticcacaulis_excentricus_CB_48
Processing: Halobacillus_halophilus_DSM_2266
Processing: Melioribacter_roseus_P3M-2
Processing: Ignavibacterium_album_JCM_16511
Processing: Caldicellulosiruptor_obsidiansis_OB47
Processing: Stigmatella_aurantiaca_DW4_3-1
Processing: Yersinia_pestis_biovar_Microtus_str_91001
Processing: Kocuria_rhizophila_DC2201
Processing: Caldicellulosiruptor_kronotskyensis_2002
Processing: Eubacterium_acidaminophilum_DSM_3953
Processing: Shigella_sonnei_53G
Processing: Thiocystis_violascens_DSM_198
Processing: Riemerella_anatipestifer_RA-GD
Processing: Porphyromonas_gingivalis_TDC60
Processing: Corynebacterium_terpenotabidum_Y-11
Processing: Campylobacter_volucris_LMG_24379
Processing: Acidovorax_avenae_subsp_avenae_ATCC_19860
Processing: Listeria_monocytogenes_serotype_4b_str_CLIP_80459
Processing: Brucella_pinnipedialis_B2_94
Processing: Corynebacterium_marinum_DSM_44953
Processing: Leptospira_biflexa_serovar_Patoc_strain_Patoc_1_Paris
Processing: Lactobacillus_gasseri_ATCC_33323_JCM_1131
Processing: Barnesiella_viscericola_DSM_18177
Processing: Clostridium_kluyveri_NBRC_12016
Processing: Arthrobacter_phenanthrenivorans_Sphe3
Processing: Desulfarculus_baarsii_DSM_2075
Processing: Oceanobacillus_iheyensis_HTE831
Processing: Marivirga_tractuosa_DSM_4126
Processing: Pedobacter_saltans_DSM_12145
Processing: Pseudonocardia_dioxanivorans_CB1190
Processing: Actinoplanes_missouriensis_431
Processing: Segniliparus_rotundus_DSM_44985
Processing: Actinosynnema_mirum_DSM_43827
Processing: Legionella_oakridgensis_ATCC_33761_DSM_21215
Processing: Lactobacillus_ruminis_ATCC_27782
Processing: Oscillatoria_nigro-viridis_PCC_7112
Processing: Spirochaeta_africana_DSM_8902
Processing: Burkholderia_phenoliruptrix_BR3459a
Processing: Eubacterium_limosum_KIST612
Processing: Brachyspira_intermedia_PWS_A
Processing: Bdellovibrio_bacteriovorus_W
Processing: Mycoplasma_mycoides_subsp_mycoides
Processing: Desulfovibrio_africanus_str_Walvis_Bay
Processing: Bacillus_amyloliquefaciens_SQR9
Processing: Burkholderia_mallei_ATCC_23344
Processing: Methylibium_petroleiphilum_PM1
Processing: Clostridiales_genomosp_BVAB3_str_UPII9-5
Processing: Mycoplasma_capricolum_subsp_capricolum_ATCC_27343
Processing: Colwellia_psychrerythraea_34H
Processing: Phaeobacter_inhibens_DSM_17395
Processing: Ehrlichia_canis_str_Jake
Processing: Bordetella_pertussis_18323
Processing: Thermotoga_neapolitana_DSM_4359
Processing: Clostridium_beijerinckii_ATCC_35702
Processing: Dechloromonas_aromatica_RCB
Processing: Cryptobacterium_curtum_DSM_15641
Processing: Leptospirillum_ferrooxidans_C2-3
Processing: Legionella_pneumophila_subsp_pneumophila_str_Philadelphia_1
Processing: Edwardsiella_piscicida_C07-087
Processing: Methylobacterium_oryzae_CBMB20
Processing: Rhodothermus_marinus_DSM_4252
Processing: Salmonella_bongori_NCTC_12419
Processing: Bifidobacterium_animalis_subsp_lactis_ATCC_27673
Processing: Leuconostoc_citreum_KM20
Processing: Saccharomonospora_viridis_DSM_43017
Processing: Nitrobacter_hamburgensis_X14
Processing: Corynebacterium_pseudotuberculosis_FRC41
Processing: Clostridium_baratii_str_Sullivan
Processing: Pseudomonas_fluorescens_F113
Processing: Thermoanaerobacter_brockii_subsp_finnii_Ako-1
Processing: Anaerolinea_thermophila_UNI-1
Processing: Advenella_kashmirensis_WT001
Processing: Thermotoga_lettingae_TMO
Processing: Cyanobacterium_stanieri_PCC_7202
Processing: Serratia_plymuthica_RVH1
Processing: Propionibacterium_propionicum_F0230a
Processing: Candidatus_Ruthia_magnifica_str_Cm_Calyptogena_magnifica
Processing: Caulobacter_segnis_ATCC_21756
Processing: Sideroxydans_lithotrophicus_ES-1
Processing: Corynebacterium_vitaeruminis_DSM_20294
Processing: Mycobacterium_abscessus_subsp_bolletii_50594
Processing: Alistipes_finegoldii_DSM_17242
Processing: Sphingomonas_sanxanigenens_DSM_19645_NX02
Processing: Listeria_welshimeri_serovar_6b_str_SLCC5334
Processing: Marinitoga_piezophila_KA3
Processing: Deinococcus_deserti_VCD115
Processing: Thermotoga_petrophila_RKU-1
Processing: Buchnera_aphidicola_str_G002_Myzus_persicae
Processing: Mycobacterium_bovis_BCG_str_Pasteur_1173P2
Processing: Exiguobacterium_antarcticum_B7
Processing: Yersinia_frederiksenii_Y225
Processing: Streptomyces_violaceusniger_Tu_4113
Processing: Mycoplasma_hyopneumoniae_7448
Processing: Francisella_cf_tularensis_subsp_novicida_3523
Processing: Natranaerobius_thermophilus_JW_NM-WN-LF
Processing: Bacillus_cellulosilyticus_DSM_2522
Processing: Neisseria_elongata_subsp_glycolytica_ATCC_29315
Processing: Desulfitobacterium_dichloroeliminans_LMG_P-21439
Processing: Pseudomonas_mosselii_SJ10
Processing: Borrelia_turicatae_91E135
Processing: Mannheimia_varigena_USDA-ARS-USMARC-1388
Processing: Neisseria_meningitidis_LNP21362
Processing: Desulfurispirillum_indicum_S5
Processing: Thermotoga_naphthophila_RKU-10
Processing: Mycoplasma_mobile_163K
Processing: Bifidobacterium_asteroides_PRL2011
Processing: Shewanella_piezotolerans_WP3
Processing: Clostridium_pasteurianum_DSM_525_ATCC_6013
Processing: Borrelia_miyamotoi_LB-2001
Processing: Thermotoga_profunda_AZM34c06
Processing: Nocardiopsis_dassonvillei_subsp_dassonvillei_DSM_43111
Processing: Thermodesulfobium_narugense_DSM_14796
Processing: Bartonella_quintana_RM-11
Processing: Mycobacterium_canettii_CIPT_140010059
Processing: Acidithiobacillus_ferrooxidans_ATCC_53993
Processing: Corynebacterium_falsenii_DSM_44353
Processing: Pseudomonas_syringae_pv_phaseolicola_1448A
Processing: Shewanella_denitrificans_OS217
Processing: Thermobispora_bispora_DSM_43833
Processing: Corynebacterium_callunae_DSM_20147
Processing: Psychroflexus_torquis_ATCC_700755
Processing: Azotobacter_chroococcum_NCIMB_8003
Processing: Caldicellulosiruptor_owensensis_OL
Processing: Microcystis_aeruginosa_NIES-843
Processing: Deinococcus_geothermalis_DSM_11300
Processing: Thermocrinis_albus_DSM_14484
Processing: Arcobacter_nitrofigilis_DSM_7299
Processing: Kitasatospora_setae_KM-6054
Processing: Actinobacillus_suis_ATCC_33415
Processing: Zunongwangia_profunda_SM-A87
Processing: Parachlamydia_acanthamoebae_UV-7
Processing: Staphylococcus_epidermidis_RP62A
Processing: Ornithobacterium_rhinotracheale_ORT-UMN_88
Processing: Shewanella_oneidensis_MR-1
Processing: Clostridium_autoethanogenum_DSM_10061
Processing: Mesotoga_prima_MesG1_Ag_4_2
Processing: Candidatus_Accumulibacter_phosphatis_clade_IIA_str_UW-1
Processing: Mycoplasma_cynos_C142
Processing: Fusobacterium_nucleatum_subsp_nucleatum_ATCC_25586
Processing: Lactobacillus_fermentum_F-6
Processing: Leptospirillum_ferriphilum_YSK
Processing: Novosphingobium_pentaromativorans_US6-1
Processing: Halorhodospira_halophila_SL1
Processing: Borrelia_valaisiana_VS116
Processing: Komagataeibacter_xylinus_E25
Processing: Mobiluncus_curtisii_ATCC_43063
Processing: Emticicia_oligotrophica_DSM_17448
Processing: Pseudomonas_brassicacearum_subsp_brassicacearum_NFM421
Processing: Oenococcus_oeni_PSU-1
Processing: Macrococcus_caseolyticus_JCSC5402
Processing: Belliella_baltica_DSM_15883
Processing: Saccharopolyspora_erythraea_NRRL_2338
Processing: Corynebacterium_ulcerans_BR-AD22
Processing: uncultured_Termite_group_1_bacterium_phylotype_Rs-D17
Processing: Desulfobacterium_autotrophicum_HRM2
Processing: Candidatus_Midichloria_mitochondrii_IricVA
Processing: Coprothermobacter_proteolyticus_DSM_5265
Processing: Anaeromyxobacter_dehalogenans_2CP-C
Processing: Polaromonas_naphthalenivorans_CJ2
Processing: Candidatus_Uzinura_diaspidicola_str_ASNER
Processing: Anabaena_variabilis_ATCC_29413
Processing: Ilumatobacter_coccineus_YM16-304
Processing: Gordonia_polyisoprenivorans_VH2
Processing: Ralstonia_solanacearum_GMI1000
Processing: Anaplasma_phagocytophilum_str_HZ2
Processing: Rickettsia_akari_str_Hartford
Processing: Bacillus_toyonensis_BCT-7112
Processing: Anaplasma_marginale_str_Florida
Processing: Bartonella_clarridgeiae_73
Processing: Chlamydophila_caviae_GPIC
Processing: Paenibacillus_sabinae_T27
Processing: Vibrio_tasmaniensis_LGP32
Processing: Bacillus_thuringiensis_serovar_galleriae
Processing: Vibrio_cholerae_MJ-1236
Processing: Leptotrichia_buccalis_C-1013-b
Processing: Candidatus_Kinetoplastibacterium_blastocrithidii_TCC012E
Processing: Bartonella_grahamii_as4aup
Processing: Hymenobacter_swuensis_DY53
Processing: Thermosynechococcus_elongatus_BP-1
Processing: Pseudomonas_putida_F1
Processing: Staphylococcus_lugdunensis_N920143
Processing: Nostoc_azollae_0708
Processing: Corynebacterium_kroppenstedtii_DSM_44385
Processing: Mycoplasma_suis_KI3806
Processing: Mycoplasma_fermentans_JER
Processing: Pseudomonas_mandelii_JR-1
Processing: Frateuria_aurantia_DSM_6220
Processing: Moraxella_catarrhalis_BBH18
Processing: Streptomyces_hygroscopicus_subsp_jinggangensis_5008
Processing: Desulfotomaculum_gibsoniae_DSM_7213
Processing: Blattabacterium_sp_Blattella_germanica_str_Bge
Processing: Pseudomonas_chlororaphis_subsp_aurantiaca
Processing: Desulfotomaculum_kuznetsovii_DSM_6115
Processing: Halomonas_elongata_DSM_2581
Processing: Propionibacterium_freudenreichii_subsp_shermanii_CIRM-BIA1
Processing: Bacillus_lehensis_G1
Processing: Thermotoga_elfii_NBRC_107921
Processing: Wolbachia_endosymbiont_of_Onchocerca_volvulus_str_Cameroon
Processing: Roseiflexus_castenholzii_DSM_13941
Processing: Ureaplasma_urealyticum_serovar_10_str_ATCC_33699
Processing: Lactobacillus_paracasei_subsp_paracasei_JCM_8130
Processing: Haemophilus_influenzae_PittEE
Processing: Dictyoglomus_thermophilum_H-6-12
Processing: Nostoc_punctiforme_PCC_73102
Processing: Pseudomonas_stutzeri_DSM_4166
Processing: Candidatus_Carsonella_ruddii_PV
Processing: Flavobacterium_branchiophilum_FL-15
Processing: Burkholderia_phytofirmans_PsJN
Processing: Mycobacterium_smegmatis_JS623
Processing: Caldicellulosiruptor_bescii_DSM_6725
Processing: Propionibacterium_acnes_6609
Processing: Campylobacter_curvus_525_92
Processing: Bacteroides_thetaiotaomicron_VPI-5482
Processing: Burkholderia_gladioli_BSR3
Processing: Clostridium_ljungdahlii_DSM_13528
Processing: Thermotoga_thermarum_DSM_5069
Processing: Propionibacterium_acidipropionici_ATCC_4875
Processing: Streptococcus_anginosus_C238
Processing: Bacillus_licheniformis_DSM_13_ATCC_14580
Processing: Herpetosiphon_aurantiacus_DSM_785
Processing: Cellvibrio_japonicus_Ueda107
Processing: Clostridium_saccharobutylicum_DSM_13864
Processing: Sphaerochaeta_pleomorpha_str_Grapes
Processing: Verrucosispora_maris_AB-18-032
Processing: Streptococcus_pneumoniae_ST556
Processing: Mycoplasma_parvum_str_Indiana
Processing: Candidatus_Kinetoplastibacterium_crithidii_ex_Angomonas_deanei_ATCC_30255
Processing: Pseudoxanthomonas_suwonensis_11-1
Processing: Neorickettsia_sennetsu_str_Miyayama
Processing: Methylobacterium_nodulans_ORS_2060
Processing: Gluconacetobacter_diazotrophicus_PA1_5
Processing: Rhodococcus_opacus_B4
Processing: Rhodomicrobium_vannielii_ATCC_17100
Processing: Azospirillum_lipoferum_4B
Processing: Parvibaculum_lavamentivorans_DS-1
Processing: Lactobacillus_rhamnosus_Lc_705
Processing: Cyclobacterium_marinum_DSM_745
Processing: Candidatus_Tremblaya_princeps_PCVAL
Processing: Cronobacter_sakazakii_SP291
Processing: Caldilinea_aerophila_DSM_14535_NBRC_104270
Processing: Geobacter_metallireducens_GS-15
Processing: Parvularcula_bermudensis_HTCC2503
Processing: Escherichia_coli_1303
Processing: Geobacter_bemidjiensis_Bem
Processing: Ramlibacter_tataouinensis_TTB310
Processing: Ruminococcus_albus_7_DSM_20455
Processing: Desulfomicrobium_baculatum_DSM_4028
Processing: Teredinibacter_turnerae_T7901
Processing: Nitrosococcus_oceani_ATCC_19707
Processing: Pseudomonas_syringae_pv_syringae_B728a
Processing: Mycobacterium_africanum_GM041182
Processing: Singulisphaera_acidiphila_DSM_18658
Processing: Clostridium_cellulolyticum_H10
Processing: Olsenella_uli_DSM_7084
Processing: Tistrella_mobilis_KA081020-065
Processing: Starkeya_novella_DSM_506
Processing: Finegoldia_magna_ATCC_29328
Processing: Desulfohalobium_retbaense_DSM_5692
Processing: Oscillatoria_acuminata_PCC_6304
Processing: Mesorhizobium_australicum_WSM2073
Processing: Methylacidiphilum_infernorum_V4
Processing: Borrelia_garinii_PBi
Processing: Acidimicrobium_ferrooxidans_DSM_10331
Processing: Chloroflexus_aggregans_DSM_9485
Processing: Thermovirga_lienii_DSM_17291
Processing: Rhodococcus_pyridinivorans_SB3094
Processing: Caldicellulosiruptor_kristjanssonii_I77R1B
Processing: Ruminiclostridium_thermocellum_DSM_1313
Processing: Rothia_dentocariosa_ATCC_17931
Processing: Owenweeksia_hongkongensis_DSM_17368
Processing: Candidatus_Nasuia_deltocephalinicola_str_NAS-ALF
Processing: Streptomyces_bingchenggensis_BCW-1
Processing: Neorhizobium_galegae_bv_officinalis_bv_officinalis_str_HAMBI_1141
Processing: Bacteriovorax_marinus_SJ
Processing: Rickettsia_rickettsii_str_Hino
Processing: Blattabacterium_sp_Periplaneta_americana_str_BPLAN
Processing: Dinoroseobacter_shibae_DFL_12_DSM_16493
Processing: Candidatus_Chloracidobacterium_thermophilum_B
Processing: Geobacillus_kaustophilus_HTA426
Processing: Leptothrix_cholodnii_SP-6
Processing: Spiroplasma_sabaudiense_Ar-1343
Processing: Streptococcus_pseudopneumoniae_IS7493
Processing: Aggregatibacter_actinomycetemcomitans_D7S-1
Processing: Bifidobacterium_bifidum_BGN4
Processing: Xanthomonas_axonopodis_Xac29-1
Processing: Desulfobacca_acetoxidans_DSM_11109
Processing: Rickettsia_montanensis_str_OSU_85-930
Processing: Streptococcus_oligofermentans_AS_1_3089
Processing: Streptococcus_macedonicus_ACA-DC_198
Processing: Bifidobacterium_dentium_Bd1
Processing: Francisella_philomiragia_subsp_philomiragia_ATCC_25015
Processing: Collimonas_fungivorans_Ter331
Processing: Desulfitobacterium_dehalogenans_ATCC_51507
Processing: Isoptericola_variabilis_225
Processing: Anaplasma_centrale_str_Israel
Processing: Caldicellulosiruptor_hydrothermalis_108
Processing: Weissella_koreensis_KACC_15510
Processing: Elizabethkingia_anophelis_NUHP1
Processing: Hyphomonas_neptunium_ATCC_15444
Processing: Coriobacterium_glomerans_PW2
Processing: Bordetella_bronchiseptica_253
Processing: Brachyspira_pilosicoli_95_1000
Processing: Moorella_thermoacetica_ATCC_39073
Processing: Campylobacter_subantarcticus_LMG_24377
Processing: Brucella_suis_bv_1_str_S2
Processing: Sulfuricella_denitrificans_skB26
Processing: Shigella_flexneri_Shi06HN006
Processing: Tsukamurella_paurometabola_DSM_20162
Processing: Bacteroides_salanitronis_DSM_18170
Processing: Tepidanaerobacter_acetatoxydans_Re1
Processing: Streptococcus_agalactiae_COH1
Processing: Ketogulonicigenium_vulgare_WSH-001
Processing: Pelobacter_carbinolicus_DSM_2380
Processing: Dichelobacter_nodosus_VCS1703A
Processing: Brevibacillus_brevis_NBRC_100599
Processing: Candidatus_Vesicomyosocius_okutanii_HA
Processing: Nocardia_farcinica_IFM_10152
Processing: Candidatus_Solibacter_usitatus_Ellin6076
Processing: Dyadobacter_fermentans_DSM_18053

In [9]:

    

!cd $buildDir; \
    SIPSim communities \
    $genomeDir/genome_index.txt \
    --abund_dist_p=mean:10,sigma:1 \
    --n_comm 1 \
    > comm_m10-s1.txt


    

In [10]:

    

!cd $buildDir; \
    SIPSim communities \
    $genomeDir/genome_index.txt \
    --abund_dist_p=mean:10,sigma:2 \
    --n_comm 1 \
    > comm_m10-s2.txt


    

In [11]:

    

!cd $buildDir; \
    SIPSim communities \
    $genomeDir/genome_index.txt \
    --abund_dist_p=mean:10,sigma:3 \
    --n_comm 1 \
    > comm_m10-s3.txt


    

In [12]:

    

%%R -i buildDir
# loading comm files
setwd(buildDir)

inFiles = c('comm_m10-s1.txt', 'comm_m10-s2.txt', 'comm_m10-s3.txt')

tbl.l = list()
for (x in inFiles){
    tbl.l[[x]] = read.delim(x, sep='\t')
    }
tbl = do.call(rbind, tbl.l)


    

In [13]:

    

%%R -w 800

tbl$distribution = gsub('[0-9]+$', '', rownames(tbl))

ggplot(tbl, aes(rank, rel_abund_perc, color=distribution)) +
    geom_point() +
    scale_y_log10() +
    labs(x='Rank', y='Percent relative abundance') +
    theme_bw() +
    theme(
        text=element_text(size=16)
        )


    

In [18]:

    

%%R
# min-max relative abundance 

tbl %>% 
    group_by(distribution) %>%
    summarize(
        min_abund = min(rel_abund_perc),
        max_abund = max(rel_abund_perc),
        min_max_ratio = max_abund / min_abund
        )


    

    






Source: local data frame [3 x 4]

      distribution   min_abund  max_abund min_max_ratio
1 comm_m10-s1.txt. 0.002576322  0.7859413  3.050633e+02
2 comm_m10-s2.txt. 0.000004035  9.6347390  2.387792e+06
3 comm_m10-s3.txt. 0.000000168 21.3495127  1.270804e+08

In [19]:

    

# building tree structure
nest = nestly.Nest()

## varying params
#-- full run --#
nest.add('abund_dist_p', ['mean:10,sigma:1','mean:10,sigma:2','mean:10,sigma:3'])
nest.add('percIncorp', [0,5,10,15,20,30,40,50,75,100])
nest.add('rep', range(1,21))

## set params
nest.add('percTaxa', [10], create_dir=False)
nest.add('np', [6], create_dir=False)
nest.add('abs', ['1e9'], create_dir=False)
nest.add('subsample_mean', [30000], create_dir=False) 
nest.add('subsample_scale', [5000], create_dir=False) 
nest.add('BD_min', [1.71], create_dir=False)
nest.add('BD_max', [1.75], create_dir=False)
nest.add('padj', [0.1], create_dir=False)
nest.add('log2', [0.25], create_dir=False)
nest.add('topTaxaToPlot', [100], create_dir=False)

## input/output files
nest.add('buildDir', [buildDir], create_dir=False)
nest.add('frag_file', ['ampFrags_kde_dif'], create_dir=False)
nest.add('comm_file', ['comm.txt'], create_dir=False)
nest.add('genome_index', [os.path.join(genomeDir, 'genome_index.txt')], create_dir=False)
nest.add('R_dir', [R_dir], create_dir=False)

# building directory tree
nest.build(buildDir)


    

In [20]:

    

bashFile = os.path.join(buildDir, 'SIPSimRun.sh')


    

In [21]:

    

%%writefile $bashFile
#!/bin/bash

# symlinking input files
ln -s {buildDir}/{frag_file}.pkl {frag_file}.pkl

# Creating a community file
SIPSim communities \
    {genome_index} \
    --abund_dist_p {abund_dist_p} \
    --n_comm 2 \
    > comm.txt    

# simulating gradient fractions
SIPSim gradient_fractions \
    {comm_file} \
    > fracs.txt
    
# making incorp file
SIPSim incorpConfigExample \
  --percTaxa {percTaxa} \
  --percIncorpUnif {percIncorp} \
  > {percTaxa}_{percIncorp}.config

# adding isotope incorporation to BD distribution
SIPSim isotope_incorp \
    {frag_file}.pkl \
    {percTaxa}_{percIncorp}.config \
    --comm {comm_file} \
    --np {np} \
    > {frag_file}_incorp.pkl
 
# calculating BD shift from isotope incorporation
SIPSim BD_shift \
    {frag_file}.pkl \
    {frag_file}_incorp.pkl \
    --np {np} \
    > {frag_file}_incorp_BD-shift.txt

# simulating an OTU table
SIPSim OTU_table \
    {frag_file}_incorp.pkl \
    {comm_file} \
    fracs.txt \
    --abs {abs} \
    --np {np} \
    > OTU_n2_abs{abs}.txt
    
# subsampling from the OTU table (simulating sequencing of the DNA pool)
SIPSim OTU_subsample \
    --dist normal \
    --dist_params loc:{subsample_mean},scale:{subsample_scale} \
    OTU_n2_abs{abs}.txt \
    > OTU_n2_abs{abs}_sub-norm.txt

# making a wide table
SIPSim OTU_wideLong -w \
    OTU_n2_abs{abs}_sub-norm.txt \
    > OTU_n2_abs{abs}_sub-norm_w.txt
    
# making metadata (phyloseq: sample_data)
SIPSim OTU_sampleData \
    OTU_n2_abs{abs}_sub-norm.txt \
    > OTU_n2_abs{abs}_sub-norm_meta.txt


    

    




Writing /home/nick/notebook/SIPSim/dev/bac_genome1210/atomIncorp_evenness/SIPSimRun.sh

In [22]:

    

!chmod 775 $bashFile


    

In [ ]:

    

!cd $workDir; \
    nestrun -j 5 --template-file $bashFile -d atomIncorp_evenness --log-file log.txt


    

    




2015-08-05 13:06:20,059 * INFO * Template: ./SIPSimRun.sh
2015-08-05 13:06:20,062 * INFO * [233453] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/20
2015-08-05 13:06:20,065 * INFO * [233454] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/14
2015-08-05 13:06:20,069 * INFO * [233456] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/7
2015-08-05 13:06:20,073 * INFO * [233459] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/19
2015-08-05 13:06:20,077 * INFO * [233460] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/18

In [73]:

    

%%writefile $bashFile
#!/bin/bash

#-- R analysis --#
export PATH={R_dir}:$PATH
    
# plotting taxon abundances
OTU_taxonAbund.r \
    OTU_n2_abs{abs}.txt \
    -r {topTaxaToPlot} \
    -o OTU_n2_abs{abs}
# plotting taxon abundances
OTU_taxonAbund.r \
    OTU_n2_abs{abs}_sub-norm.txt \
    -r {topTaxaToPlot} \
    -o OTU_n2_abs{abs}_subsub-norm
# running DeSeq2 and making confusion matrix on predicting incorporators
## making phyloseq object from OTU table
phyloseq_make.r \
    OTU_n2_abs{abs}_sub-norm_w.txt \
    -s OTU_n2_abs{abs}_sub-norm_meta.txt \
    > OTU_n2_abs{abs}_sub-norm.physeq
## filtering phyloseq object to just taxa/samples of interest
phyloseq_edit.r \
    OTU_n2_abs{abs}_sub-norm.physeq \
    --BD_min {BD_min} \
    --BD_max {BD_max} \
    > OTU_n2_abs{abs}_sub-norm_filt.physeq
## making ordination
phyloseq_ordination.r \
    OTU_n2_abs{abs}_sub-norm_filt.physeq \
    OTU_n2_abs{abs}_sub-norm_bray-NMDS.pdf
## DESeq2
phyloseq_DESeq2.r \
    OTU_n2_abs{abs}_sub-norm_filt.physeq \
    --log2 {log2} \
    --hypo greater \
    > OTU_n2_abs{abs}_sub-norm_DESeq2
## Confusion matrix
DESeq2_confuseMtx.r \
    {frag_file}_incorp_BD-shift.txt \
    OTU_n2_abs{abs}_sub-norm_DESeq2 \
    --padj {padj}


    

    




Overwriting /home/nick/notebook/SIPSim/dev/bac_genome1210/atomIncorp_evenness/SIPSimRun.sh

In [74]:

    

!chmod 775 $bashFile


    

In [75]:

    

!cd $workDir; \
    nestrun -j 30 --template-file $bashFile -d atomIncorp_evenness --log-file logR.txt


    

    




2015-08-08 08:02:14,179 * INFO * Template: ./SIPSimRun.sh
2015-08-08 08:02:14,181 * INFO * [24418] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/20
2015-08-08 08:02:14,183 * INFO * [24419] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/14
2015-08-08 08:02:14,185 * INFO * [24421] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/7
2015-08-08 08:02:14,187 * INFO * [24424] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/19
2015-08-08 08:02:14,190 * INFO * [24431] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/18
2015-08-08 08:02:14,193 * INFO * [24439] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/15
2015-08-08 08:02:14,195 * INFO * [24447] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/11
2015-08-08 08:02:14,197 * INFO * [24451] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/16
2015-08-08 08:02:14,199 * INFO * [24456] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/9
2015-08-08 08:02:14,201 * INFO * [24460] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/17
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2015-08-08 08:02:14,209 * INFO * [24491] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/20/10
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2015-08-08 08:03:55,669 * INFO * [24517] atomIncorp_evenness/mean:10,sigma:3/20/1 Finished with 0
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2015-08-08 08:05:32,737 * INFO * [27253] atomIncorp_evenness/mean:10,sigma:3/30/6 Finished with 0
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2015-08-08 08:05:33,541 * INFO * [27152] atomIncorp_evenness/mean:10,sigma:3/30/1 Finished with 0
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2015-08-08 08:05:35,287 * INFO * [27376] atomIncorp_evenness/mean:10,sigma:3/50/18 Finished with 0
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2015-08-08 08:05:35,666 * INFO * [27494] atomIncorp_evenness/mean:10,sigma:3/50/8 Finished with 0
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2015-08-08 08:05:36,814 * INFO * [27689] atomIncorp_evenness/mean:10,sigma:3/50/4 Finished with 0
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2015-08-08 08:05:36,838 * INFO * [27335] atomIncorp_evenness/mean:10,sigma:3/50/19 Finished with 0
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2015-08-08 08:05:40,070 * INFO * [27656] atomIncorp_evenness/mean:10,sigma:3/50/2 Finished with 0
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2015-08-08 08:05:44,908 * INFO * [27829] atomIncorp_evenness/mean:10,sigma:3/50/6 Finished with 0
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2015-08-08 08:07:00,190 * INFO * [29929] atomIncorp_evenness/mean:10,sigma:3/75/7 Finished with 0
2015-08-08 08:07:00,193 * INFO * [32747] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/15/13
2015-08-08 08:07:02,492 * INFO * [30425] atomIncorp_evenness/mean:10,sigma:3/15/7 Finished with 0
2015-08-08 08:07:02,495 * INFO * [32808] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/15/10
2015-08-08 08:07:03,744 * INFO * [30041] atomIncorp_evenness/mean:10,sigma:3/75/11 Finished with 0
2015-08-08 08:07:03,746 * INFO * [32829] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/15/2
2015-08-08 08:07:05,021 * INFO * [30050] atomIncorp_evenness/mean:10,sigma:3/75/16 Finished with 0
2015-08-08 08:07:05,023 * INFO * [32856] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/15/12
2015-08-08 08:07:05,828 * INFO * [29970] atomIncorp_evenness/mean:10,sigma:3/75/19 Finished with 0
2015-08-08 08:07:05,831 * INFO * [32898] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/15/1
2015-08-08 08:07:07,375 * INFO * [30201] atomIncorp_evenness/mean:10,sigma:3/75/13 Finished with 0
2015-08-08 08:07:07,378 * INFO * [32959] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/15/4
2015-08-08 08:07:07,935 * INFO * [30273] atomIncorp_evenness/mean:10,sigma:3/75/2 Finished with 0
2015-08-08 08:07:07,938 * INFO * [32989] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/15/5
2015-08-08 08:07:08,279 * INFO * [30165] atomIncorp_evenness/mean:10,sigma:3/75/3 Finished with 0
2015-08-08 08:07:08,282 * INFO * [33007] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/15/6
2015-08-08 08:07:08,514 * INFO * [30375] atomIncorp_evenness/mean:10,sigma:3/15/20 Finished with 0
2015-08-08 08:07:08,516 * INFO * [33027] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/20
2015-08-08 08:07:09,066 * INFO * [30144] atomIncorp_evenness/mean:10,sigma:3/75/17 Finished with 0
2015-08-08 08:07:09,069 * INFO * [33044] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/14
2015-08-08 08:07:09,111 * INFO * [30311] atomIncorp_evenness/mean:10,sigma:3/75/1 Finished with 0
2015-08-08 08:07:09,113 * INFO * [33055] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/7
2015-08-08 08:07:09,113 * INFO * [30216] atomIncorp_evenness/mean:10,sigma:3/75/10 Finished with 0
2015-08-08 08:07:09,115 * INFO * [33057] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/19
2015-08-08 08:07:09,517 * INFO * [30320] atomIncorp_evenness/mean:10,sigma:3/75/4 Finished with 0
2015-08-08 08:07:09,520 * INFO * [33079] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/18
2015-08-08 08:07:09,591 * INFO * [29979] atomIncorp_evenness/mean:10,sigma:3/75/18 Finished with 0
2015-08-08 08:07:09,594 * INFO * [33088] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/15
2015-08-08 08:07:09,832 * INFO * [30452] atomIncorp_evenness/mean:10,sigma:3/15/19 Finished with 0
2015-08-08 08:07:09,835 * INFO * [33099] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/11
2015-08-08 08:07:09,901 * INFO * [29989] atomIncorp_evenness/mean:10,sigma:3/75/15 Finished with 0
2015-08-08 08:07:09,903 * INFO * [33114] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/16
2015-08-08 08:07:10,336 * INFO * [30153] atomIncorp_evenness/mean:10,sigma:3/75/8 Finished with 0
2015-08-08 08:07:10,338 * INFO * [33125] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/9
2015-08-08 08:07:10,370 * INFO * [30075] atomIncorp_evenness/mean:10,sigma:3/75/9 Finished with 0
2015-08-08 08:07:10,372 * INFO * [33132] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/17
2015-08-08 08:07:11,498 * INFO * [30358] atomIncorp_evenness/mean:10,sigma:3/75/6 Finished with 0
2015-08-08 08:07:11,501 * INFO * [33155] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/8
2015-08-08 08:07:13,394 * INFO * [30406] atomIncorp_evenness/mean:10,sigma:3/15/14 Finished with 0
2015-08-08 08:07:13,396 * INFO * [33212] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/3
2015-08-08 08:07:14,893 * INFO * [30282] atomIncorp_evenness/mean:10,sigma:3/75/12 Finished with 0
2015-08-08 08:07:14,895 * INFO * [33269] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/13
2015-08-08 08:07:14,977 * INFO * [30337] atomIncorp_evenness/mean:10,sigma:3/75/5 Finished with 0
2015-08-08 08:07:14,980 * INFO * [33278] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/10
2015-08-08 08:07:18,099 * INFO * [30579] atomIncorp_evenness/mean:10,sigma:3/15/11 Finished with 0
2015-08-08 08:07:18,103 * INFO * [33403] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/2
2015-08-08 08:07:19,652 * INFO * [30476] atomIncorp_evenness/mean:10,sigma:3/15/15 Finished with 0
2015-08-08 08:07:19,655 * INFO * [33466] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/12
2015-08-08 08:07:21,459 * INFO * [30459] atomIncorp_evenness/mean:10,sigma:3/15/18 Finished with 0
2015-08-08 08:07:21,462 * INFO * [33521] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/1
2015-08-08 08:07:21,619 * INFO * [30718] atomIncorp_evenness/mean:10,sigma:3/15/16 Finished with 0
2015-08-08 08:07:21,621 * INFO * [33530] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/4
2015-08-08 08:07:29,087 * INFO * [30768] atomIncorp_evenness/mean:10,sigma:3/15/9 Finished with 0
2015-08-08 08:07:29,090 * INFO * [33747] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/5
2015-08-08 08:07:32,020 * INFO * [30784] atomIncorp_evenness/mean:10,sigma:3/15/17 Finished with 0
2015-08-08 08:07:32,023 * INFO * [33808] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/0/6
2015-08-08 08:08:32,714 * INFO * [32686] atomIncorp_evenness/mean:10,sigma:3/15/3 Finished with 0
2015-08-08 08:08:32,717 * INFO * [35522] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/20
2015-08-08 08:08:34,075 * INFO * [32611] atomIncorp_evenness/mean:10,sigma:3/15/8 Finished with 0
2015-08-08 08:08:34,079 * INFO * [35567] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/14
2015-08-08 08:08:38,245 * INFO * [32747] atomIncorp_evenness/mean:10,sigma:3/15/13 Finished with 0
2015-08-08 08:08:38,248 * INFO * [35636] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/7
2015-08-08 08:08:40,005 * INFO * [32898] atomIncorp_evenness/mean:10,sigma:3/15/1 Finished with 0
2015-08-08 08:08:40,008 * INFO * [35691] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/19
2015-08-08 08:08:42,632 * INFO * [32856] atomIncorp_evenness/mean:10,sigma:3/15/12 Finished with 0
2015-08-08 08:08:42,635 * INFO * [35748] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/18
2015-08-08 08:08:43,534 * INFO * [32808] atomIncorp_evenness/mean:10,sigma:3/15/10 Finished with 0
2015-08-08 08:08:43,536 * INFO * [35804] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/15
2015-08-08 08:08:44,678 * INFO * [32989] atomIncorp_evenness/mean:10,sigma:3/15/5 Finished with 0
2015-08-08 08:08:44,680 * INFO * [35842] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/11
2015-08-08 08:08:45,173 * INFO * [33079] atomIncorp_evenness/mean:10,sigma:3/0/18 Finished with 0
2015-08-08 08:08:45,175 * INFO * [35857] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/16
2015-08-08 08:08:45,233 * INFO * [32959] atomIncorp_evenness/mean:10,sigma:3/15/4 Finished with 0
2015-08-08 08:08:45,234 * INFO * [35866] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/9
2015-08-08 08:08:45,331 * INFO * [33212] atomIncorp_evenness/mean:10,sigma:3/0/3 Finished with 0
2015-08-08 08:08:45,333 * INFO * [35875] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/17
2015-08-08 08:08:45,838 * INFO * [32829] atomIncorp_evenness/mean:10,sigma:3/15/2 Finished with 0
2015-08-08 08:08:45,841 * INFO * [35890] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/8
2015-08-08 08:08:46,006 * INFO * [33027] atomIncorp_evenness/mean:10,sigma:3/0/20 Finished with 0
2015-08-08 08:08:46,009 * INFO * [35905] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/3
2015-08-08 08:08:47,545 * INFO * [33155] atomIncorp_evenness/mean:10,sigma:3/0/8 Finished with 0
2015-08-08 08:08:47,548 * INFO * [35942] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/13
2015-08-08 08:08:47,753 * INFO * [33114] atomIncorp_evenness/mean:10,sigma:3/0/16 Finished with 0
2015-08-08 08:08:47,756 * INFO * [35967] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/10
2015-08-08 08:08:48,070 * INFO * [33007] atomIncorp_evenness/mean:10,sigma:3/15/6 Finished with 0
2015-08-08 08:08:48,072 * INFO * [35994] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/2
2015-08-08 08:08:48,620 * INFO * [33099] atomIncorp_evenness/mean:10,sigma:3/0/11 Finished with 0
2015-08-08 08:08:48,623 * INFO * [36015] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/12
2015-08-08 08:08:48,634 * INFO * [33125] atomIncorp_evenness/mean:10,sigma:3/0/9 Finished with 0
2015-08-08 08:08:48,636 * INFO * [36022] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/1
2015-08-08 08:08:48,838 * INFO * [33088] atomIncorp_evenness/mean:10,sigma:3/0/15 Finished with 0
2015-08-08 08:08:48,841 * INFO * [36031] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/4
2015-08-08 08:08:52,115 * INFO * [33055] atomIncorp_evenness/mean:10,sigma:3/0/7 Finished with 0
2015-08-08 08:08:52,117 * INFO * [36124] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/5
2015-08-08 08:08:52,606 * INFO * [33132] atomIncorp_evenness/mean:10,sigma:3/0/17 Finished with 0
2015-08-08 08:08:52,609 * INFO * [36147] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/100/6
2015-08-08 08:08:53,895 * INFO * [33044] atomIncorp_evenness/mean:10,sigma:3/0/14 Finished with 0
2015-08-08 08:08:53,897 * INFO * [36186] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/20
2015-08-08 08:08:54,682 * INFO * [33057] atomIncorp_evenness/mean:10,sigma:3/0/19 Finished with 0
2015-08-08 08:08:54,685 * INFO * [36211] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/14
2015-08-08 08:08:56,305 * INFO * [33269] atomIncorp_evenness/mean:10,sigma:3/0/13 Finished with 0
2015-08-08 08:08:56,308 * INFO * [36261] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/7
2015-08-08 08:08:57,495 * INFO * [33403] atomIncorp_evenness/mean:10,sigma:3/0/2 Finished with 0
2015-08-08 08:08:57,498 * INFO * [36314] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/19
2015-08-08 08:09:00,080 * INFO * [33530] atomIncorp_evenness/mean:10,sigma:3/0/4 Finished with 0
2015-08-08 08:09:00,082 * INFO * [36411] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/18
2015-08-08 08:09:00,111 * INFO * [33278] atomIncorp_evenness/mean:10,sigma:3/0/10 Finished with 0
2015-08-08 08:09:00,114 * INFO * [36418] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/15
2015-08-08 08:09:00,508 * INFO * [33466] atomIncorp_evenness/mean:10,sigma:3/0/12 Finished with 0
2015-08-08 08:09:00,511 * INFO * [36433] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/11
2015-08-08 08:09:00,849 * INFO * [33747] atomIncorp_evenness/mean:10,sigma:3/0/5 Finished with 0
2015-08-08 08:09:00,852 * INFO * [36444] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/16
2015-08-08 08:09:01,471 * INFO * [33808] atomIncorp_evenness/mean:10,sigma:3/0/6 Finished with 0
2015-08-08 08:09:01,473 * INFO * [36463] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/9
2015-08-08 08:09:03,956 * INFO * [33521] atomIncorp_evenness/mean:10,sigma:3/0/1 Finished with 0
2015-08-08 08:09:03,959 * INFO * [36528] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/17
2015-08-08 08:10:14,489 * INFO * [35691] atomIncorp_evenness/mean:10,sigma:3/100/19 Finished with 0
2015-08-08 08:10:14,491 * INFO * [38425] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/8
2015-08-08 08:10:17,259 * INFO * [35875] atomIncorp_evenness/mean:10,sigma:3/100/17 Finished with 0
2015-08-08 08:10:17,262 * INFO * [38520] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/3
2015-08-08 08:10:18,063 * INFO * [35567] atomIncorp_evenness/mean:10,sigma:3/100/14 Finished with 0
2015-08-08 08:10:18,065 * INFO * [38545] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/13
2015-08-08 08:10:18,571 * INFO * [35522] atomIncorp_evenness/mean:10,sigma:3/100/20 Finished with 0
2015-08-08 08:10:18,573 * INFO * [38564] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/10
2015-08-08 08:10:19,853 * INFO * [35748] atomIncorp_evenness/mean:10,sigma:3/100/18 Finished with 0
2015-08-08 08:10:19,857 * INFO * [38585] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/2
2015-08-08 08:10:21,769 * INFO * [36031] atomIncorp_evenness/mean:10,sigma:3/100/4 Finished with 0
2015-08-08 08:10:21,772 * INFO * [38640] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/12
2015-08-08 08:10:21,890 * INFO * [35942] atomIncorp_evenness/mean:10,sigma:3/100/13 Finished with 0
2015-08-08 08:10:21,893 * INFO * [38652] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/1
2015-08-08 08:10:22,070 * INFO * [35636] atomIncorp_evenness/mean:10,sigma:3/100/7 Finished with 0
2015-08-08 08:10:22,072 * INFO * [38667] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/4
2015-08-08 08:10:24,531 * INFO * [36022] atomIncorp_evenness/mean:10,sigma:3/100/1 Finished with 0
2015-08-08 08:10:24,534 * INFO * [38728] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/5
2015-08-08 08:10:24,549 * INFO * [35890] atomIncorp_evenness/mean:10,sigma:3/100/8 Finished with 0
2015-08-08 08:10:24,552 * INFO * [38738] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/10/6
2015-08-08 08:10:27,237 * INFO * [35804] atomIncorp_evenness/mean:10,sigma:3/100/15 Finished with 0
2015-08-08 08:10:27,239 * INFO * [38834] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/20
2015-08-08 08:10:27,426 * INFO * [35842] atomIncorp_evenness/mean:10,sigma:3/100/11 Finished with 0
2015-08-08 08:10:27,429 * INFO * [38843] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/14
2015-08-08 08:10:27,647 * INFO * [35994] atomIncorp_evenness/mean:10,sigma:3/100/2 Finished with 0
2015-08-08 08:10:27,650 * INFO * [38866] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/7
2015-08-08 08:10:28,470 * INFO * [35866] atomIncorp_evenness/mean:10,sigma:3/100/9 Finished with 0
2015-08-08 08:10:28,473 * INFO * [38888] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/19
2015-08-08 08:10:28,616 * INFO * [35905] atomIncorp_evenness/mean:10,sigma:3/100/3 Finished with 0
2015-08-08 08:10:28,618 * INFO * [38900] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/18
2015-08-08 08:10:29,222 * INFO * [35857] atomIncorp_evenness/mean:10,sigma:3/100/16 Finished with 0
2015-08-08 08:10:29,225 * INFO * [38931] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/15
2015-08-08 08:10:29,683 * INFO * [36124] atomIncorp_evenness/mean:10,sigma:3/100/5 Finished with 0
2015-08-08 08:10:29,685 * INFO * [38948] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/11
2015-08-08 08:10:30,366 * INFO * [36314] atomIncorp_evenness/mean:10,sigma:3/10/19 Finished with 0
2015-08-08 08:10:30,368 * INFO * [38983] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/16
2015-08-08 08:10:31,356 * INFO * [35967] atomIncorp_evenness/mean:10,sigma:3/100/10 Finished with 0
2015-08-08 08:10:31,360 * INFO * [39051] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/9
2015-08-08 08:10:31,559 * INFO * [36015] atomIncorp_evenness/mean:10,sigma:3/100/12 Finished with 0
2015-08-08 08:10:31,562 * INFO * [39071] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/17
2015-08-08 08:10:31,691 * INFO * [36211] atomIncorp_evenness/mean:10,sigma:3/10/14 Finished with 0
2015-08-08 08:10:31,694 * INFO * [39080] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/8
2015-08-08 08:10:32,729 * INFO * [36186] atomIncorp_evenness/mean:10,sigma:3/10/20 Finished with 0
2015-08-08 08:10:32,732 * INFO * [39105] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/3
2015-08-08 08:10:36,077 * INFO * [36147] atomIncorp_evenness/mean:10,sigma:3/100/6 Finished with 0
2015-08-08 08:10:36,079 * INFO * [39220] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/13
2015-08-08 08:10:37,685 * INFO * [36411] atomIncorp_evenness/mean:10,sigma:3/10/18 Finished with 0
2015-08-08 08:10:37,688 * INFO * [39257] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/10
2015-08-08 08:10:37,863 * INFO * [36261] atomIncorp_evenness/mean:10,sigma:3/10/7 Finished with 0
2015-08-08 08:10:37,864 * INFO * [39266] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/2
2015-08-08 08:10:38,654 * INFO * [36433] atomIncorp_evenness/mean:10,sigma:3/10/11 Finished with 0
2015-08-08 08:10:38,657 * INFO * [39321] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/12
2015-08-08 08:10:39,727 * INFO * [36528] atomIncorp_evenness/mean:10,sigma:3/10/17 Finished with 0
2015-08-08 08:10:39,730 * INFO * [39344] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/1
2015-08-08 08:10:41,082 * INFO * [36463] atomIncorp_evenness/mean:10,sigma:3/10/9 Finished with 0
2015-08-08 08:10:41,084 * INFO * [39419] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/4
2015-08-08 08:10:42,190 * INFO * [36444] atomIncorp_evenness/mean:10,sigma:3/10/16 Finished with 0
2015-08-08 08:10:42,192 * INFO * [39462] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/5
2015-08-08 08:10:42,384 * INFO * [36418] atomIncorp_evenness/mean:10,sigma:3/10/15 Finished with 0
2015-08-08 08:10:42,386 * INFO * [39473] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/5/6
2015-08-08 08:11:50,347 * INFO * [38425] atomIncorp_evenness/mean:10,sigma:3/10/8 Finished with 0
2015-08-08 08:11:50,349 * INFO * [41272] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/20
2015-08-08 08:11:50,995 * INFO * [38545] atomIncorp_evenness/mean:10,sigma:3/10/13 Finished with 0
2015-08-08 08:11:50,998 * INFO * [41287] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/14
2015-08-08 08:11:52,290 * INFO * [38564] atomIncorp_evenness/mean:10,sigma:3/10/10 Finished with 0
2015-08-08 08:11:52,292 * INFO * [41302] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/7
2015-08-08 08:11:57,746 * INFO * [38652] atomIncorp_evenness/mean:10,sigma:3/10/1 Finished with 0
2015-08-08 08:11:57,748 * INFO * [41451] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/19
2015-08-08 08:11:57,870 * INFO * [38834] atomIncorp_evenness/mean:10,sigma:3/5/20 Finished with 0
2015-08-08 08:11:57,874 * INFO * [41460] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/18
2015-08-08 08:11:58,588 * INFO * [38728] atomIncorp_evenness/mean:10,sigma:3/10/5 Finished with 0
2015-08-08 08:11:58,590 * INFO * [41482] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/15
2015-08-08 08:12:00,088 * INFO * [38585] atomIncorp_evenness/mean:10,sigma:3/10/2 Finished with 0
2015-08-08 08:12:00,091 * INFO * [41510] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/11
2015-08-08 08:12:00,995 * INFO * [38640] atomIncorp_evenness/mean:10,sigma:3/10/12 Finished with 0
2015-08-08 08:12:00,998 * INFO * [41553] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/16
2015-08-08 08:12:01,649 * INFO * [38520] atomIncorp_evenness/mean:10,sigma:3/10/3 Finished with 0
2015-08-08 08:12:01,651 * INFO * [41586] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/9
2015-08-08 08:12:03,285 * INFO * [38738] atomIncorp_evenness/mean:10,sigma:3/10/6 Finished with 0
2015-08-08 08:12:03,289 * INFO * [41625] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/17
2015-08-08 08:12:03,849 * INFO * [38866] atomIncorp_evenness/mean:10,sigma:3/5/7 Finished with 0
2015-08-08 08:12:03,852 * INFO * [41662] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/8
2015-08-08 08:12:04,803 * INFO * [38667] atomIncorp_evenness/mean:10,sigma:3/10/4 Finished with 0
2015-08-08 08:12:04,806 * INFO * [41705] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/3
2015-08-08 08:12:05,731 * INFO * [38983] atomIncorp_evenness/mean:10,sigma:3/5/16 Finished with 0
2015-08-08 08:12:05,734 * INFO * [41720] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/13
2015-08-08 08:12:08,127 * INFO * [38931] atomIncorp_evenness/mean:10,sigma:3/5/15 Finished with 0
2015-08-08 08:12:08,129 * INFO * [41793] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/10
2015-08-08 08:12:08,485 * INFO * [38888] atomIncorp_evenness/mean:10,sigma:3/5/19 Finished with 0
2015-08-08 08:12:08,488 * INFO * [41810] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/2
2015-08-08 08:12:08,657 * INFO * [38948] atomIncorp_evenness/mean:10,sigma:3/5/11 Finished with 0
2015-08-08 08:12:08,659 * INFO * [41819] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/12
2015-08-08 08:12:09,272 * INFO * [38843] atomIncorp_evenness/mean:10,sigma:3/5/14 Finished with 0
2015-08-08 08:12:09,275 * INFO * [41844] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/1
2015-08-08 08:12:09,802 * INFO * [39080] atomIncorp_evenness/mean:10,sigma:3/5/8 Finished with 0
2015-08-08 08:12:09,804 * INFO * [41861] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/4
2015-08-08 08:12:10,523 * INFO * [39344] atomIncorp_evenness/mean:10,sigma:3/5/1 Finished with 0
2015-08-08 08:12:10,526 * INFO * [41878] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/5
2015-08-08 08:12:10,746 * INFO * [39071] atomIncorp_evenness/mean:10,sigma:3/5/17 Finished with 0
2015-08-08 08:12:10,749 * INFO * [41887] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:3/40/6
2015-08-08 08:12:14,476 * INFO * [39220] atomIncorp_evenness/mean:10,sigma:3/5/13 Finished with 0
2015-08-08 08:12:14,478 * INFO * [41996] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/20
2015-08-08 08:12:15,389 * INFO * [39257] atomIncorp_evenness/mean:10,sigma:3/5/10 Finished with 0
2015-08-08 08:12:15,392 * INFO * [42065] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/14
2015-08-08 08:12:16,632 * INFO * [38900] atomIncorp_evenness/mean:10,sigma:3/5/18 Finished with 0
2015-08-08 08:12:16,635 * INFO * [42108] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/7
2015-08-08 08:12:16,765 * INFO * [39051] atomIncorp_evenness/mean:10,sigma:3/5/9 Finished with 0
2015-08-08 08:12:16,767 * INFO * [42117] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/19
2015-08-08 08:12:16,955 * INFO * [39473] atomIncorp_evenness/mean:10,sigma:3/5/6 Finished with 0
2015-08-08 08:12:16,957 * INFO * [42128] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/18
2015-08-08 08:12:16,960 * INFO * [39266] atomIncorp_evenness/mean:10,sigma:3/5/2 Finished with 0
2015-08-08 08:12:16,963 * INFO * [42131] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/15
2015-08-08 08:12:18,366 * INFO * [39462] atomIncorp_evenness/mean:10,sigma:3/5/5 Finished with 0
2015-08-08 08:12:18,369 * INFO * [42200] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/11
2015-08-08 08:12:20,415 * INFO * [39105] atomIncorp_evenness/mean:10,sigma:3/5/3 Finished with 0
2015-08-08 08:12:20,417 * INFO * [42245] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/16
2015-08-08 08:12:22,596 * INFO * [39419] atomIncorp_evenness/mean:10,sigma:3/5/4 Finished with 0
2015-08-08 08:12:22,599 * INFO * [42324] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/9
2015-08-08 08:12:28,235 * INFO * [39321] atomIncorp_evenness/mean:10,sigma:3/5/12 Finished with 0
2015-08-08 08:12:28,238 * INFO * [42475] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/17
2015-08-08 08:13:29,562 * INFO * [41287] atomIncorp_evenness/mean:10,sigma:3/40/14 Finished with 0
2015-08-08 08:13:29,565 * INFO * [44102] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/8
2015-08-08 08:13:30,336 * INFO * [41302] atomIncorp_evenness/mean:10,sigma:3/40/7 Finished with 0
2015-08-08 08:13:30,339 * INFO * [44124] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/3
2015-08-08 08:13:30,340 * INFO * [41272] atomIncorp_evenness/mean:10,sigma:3/40/20 Finished with 0
2015-08-08 08:13:30,343 * INFO * [44128] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/13
2015-08-08 08:13:31,765 * INFO * [41451] atomIncorp_evenness/mean:10,sigma:3/40/19 Finished with 0
2015-08-08 08:13:31,768 * INFO * [44179] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/10
2015-08-08 08:13:32,816 * INFO * [41586] atomIncorp_evenness/mean:10,sigma:3/40/9 Finished with 0
2015-08-08 08:13:32,819 * INFO * [44214] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/2
2015-08-08 08:13:35,747 * INFO * [41460] atomIncorp_evenness/mean:10,sigma:3/40/18 Finished with 0
2015-08-08 08:13:35,749 * INFO * [44290] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/12
2015-08-08 08:13:36,947 * INFO * [41482] atomIncorp_evenness/mean:10,sigma:3/40/15 Finished with 0
2015-08-08 08:13:36,949 * INFO * [44350] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/1
2015-08-08 08:13:40,023 * INFO * [41844] atomIncorp_evenness/mean:10,sigma:3/40/1 Finished with 0
2015-08-08 08:13:40,026 * INFO * [44437] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/4
2015-08-08 08:13:40,026 * INFO * [41705] atomIncorp_evenness/mean:10,sigma:3/40/3 Finished with 0
2015-08-08 08:13:40,029 * INFO * [44438] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/5
2015-08-08 08:13:41,632 * INFO * [41819] atomIncorp_evenness/mean:10,sigma:3/40/12 Finished with 0
2015-08-08 08:13:41,635 * INFO * [44463] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/20/6
2015-08-08 08:13:42,161 * INFO * [41662] atomIncorp_evenness/mean:10,sigma:3/40/8 Finished with 0
2015-08-08 08:13:42,165 * INFO * [44484] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/20
2015-08-08 08:13:44,379 * INFO * [41553] atomIncorp_evenness/mean:10,sigma:3/40/16 Finished with 0
2015-08-08 08:13:44,382 * INFO * [44575] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/14
2015-08-08 08:13:45,528 * INFO * [41810] atomIncorp_evenness/mean:10,sigma:3/40/2 Finished with 0
2015-08-08 08:13:45,531 * INFO * [44600] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/7
2015-08-08 08:13:45,871 * INFO * [41625] atomIncorp_evenness/mean:10,sigma:3/40/17 Finished with 0
2015-08-08 08:13:45,873 * INFO * [44609] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/19
2015-08-08 08:13:46,431 * INFO * [41720] atomIncorp_evenness/mean:10,sigma:3/40/13 Finished with 0
2015-08-08 08:13:46,434 * INFO * [44648] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/18
2015-08-08 08:13:48,751 * INFO * [41510] atomIncorp_evenness/mean:10,sigma:3/40/11 Finished with 0
2015-08-08 08:13:48,754 * INFO * [44691] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/15
2015-08-08 08:13:48,857 * INFO * [41887] atomIncorp_evenness/mean:10,sigma:3/40/6 Finished with 0
2015-08-08 08:13:48,859 * INFO * [44708] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/11
2015-08-08 08:13:49,058 * INFO * [41793] atomIncorp_evenness/mean:10,sigma:3/40/10 Finished with 0
2015-08-08 08:13:49,061 * INFO * [44725] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/16
2015-08-08 08:13:50,449 * INFO * [41878] atomIncorp_evenness/mean:10,sigma:3/40/5 Finished with 0
2015-08-08 08:13:50,451 * INFO * [44782] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/9
2015-08-08 08:13:50,986 * INFO * [42131] atomIncorp_evenness/mean:10,sigma:1/20/15 Finished with 0
2015-08-08 08:13:50,989 * INFO * [44807] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/17
2015-08-08 08:13:52,193 * INFO * [41996] atomIncorp_evenness/mean:10,sigma:1/20/20 Finished with 0
2015-08-08 08:13:52,196 * INFO * [44848] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/8
2015-08-08 08:13:52,756 * INFO * [41861] atomIncorp_evenness/mean:10,sigma:3/40/4 Finished with 0
2015-08-08 08:13:52,759 * INFO * [44865] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/3
2015-08-08 08:13:53,252 * INFO * [42108] atomIncorp_evenness/mean:10,sigma:1/20/7 Finished with 0
2015-08-08 08:13:53,255 * INFO * [44882] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/13
2015-08-08 08:13:55,632 * INFO * [42245] atomIncorp_evenness/mean:10,sigma:1/20/16 Finished with 0
2015-08-08 08:13:55,634 * INFO * [44967] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/10
2015-08-08 08:13:57,588 * INFO * [42128] atomIncorp_evenness/mean:10,sigma:1/20/18 Finished with 0
2015-08-08 08:13:57,590 * INFO * [45020] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/2
2015-08-08 08:13:57,660 * INFO * [42200] atomIncorp_evenness/mean:10,sigma:1/20/11 Finished with 0
2015-08-08 08:13:57,663 * INFO * [45033] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/12
2015-08-08 08:14:04,590 * INFO * [42117] atomIncorp_evenness/mean:10,sigma:1/20/19 Finished with 0
2015-08-08 08:14:04,593 * INFO * [45259] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/1
2015-08-08 08:14:04,618 * INFO * [42324] atomIncorp_evenness/mean:10,sigma:1/20/9 Finished with 0
2015-08-08 08:14:04,620 * INFO * [45267] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/4
2015-08-08 08:14:05,755 * INFO * [42475] atomIncorp_evenness/mean:10,sigma:1/20/17 Finished with 0
2015-08-08 08:14:05,758 * INFO * [45284] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/5
2015-08-08 08:14:06,099 * INFO * [42065] atomIncorp_evenness/mean:10,sigma:1/20/14 Finished with 0
2015-08-08 08:14:06,101 * INFO * [45305] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/30/6
2015-08-08 08:15:06,972 * INFO * [44179] atomIncorp_evenness/mean:10,sigma:1/20/10 Finished with 0
2015-08-08 08:15:06,975 * INFO * [46894] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/20
2015-08-08 08:15:08,067 * INFO * [44290] atomIncorp_evenness/mean:10,sigma:1/20/12 Finished with 0
2015-08-08 08:15:08,070 * INFO * [46925] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/14
2015-08-08 08:15:08,118 * INFO * [44214] atomIncorp_evenness/mean:10,sigma:1/20/2 Finished with 0
2015-08-08 08:15:08,120 * INFO * [46937] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/7
2015-08-08 08:15:11,877 * INFO * [44102] atomIncorp_evenness/mean:10,sigma:1/20/8 Finished with 0
2015-08-08 08:15:11,879 * INFO * [46989] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/19
2015-08-08 08:15:14,997 * INFO * [44128] atomIncorp_evenness/mean:10,sigma:1/20/13 Finished with 0
2015-08-08 08:15:14,999 * INFO * [47106] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/18
2015-08-08 08:15:17,608 * INFO * [44124] atomIncorp_evenness/mean:10,sigma:1/20/3 Finished with 0
2015-08-08 08:15:17,611 * INFO * [47197] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/15
2015-08-08 08:15:18,439 * INFO * [44350] atomIncorp_evenness/mean:10,sigma:1/20/1 Finished with 0
2015-08-08 08:15:18,442 * INFO * [47212] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/11
2015-08-08 08:15:19,013 * INFO * [44438] atomIncorp_evenness/mean:10,sigma:1/20/5 Finished with 0
2015-08-08 08:15:19,016 * INFO * [47245] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/16
2015-08-08 08:15:19,449 * INFO * [44575] atomIncorp_evenness/mean:10,sigma:1/30/14 Finished with 0
2015-08-08 08:15:19,451 * INFO * [47264] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/9
2015-08-08 08:15:19,514 * INFO * [44437] atomIncorp_evenness/mean:10,sigma:1/20/4 Finished with 0
2015-08-08 08:15:19,517 * INFO * [47273] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/17
2015-08-08 08:15:20,198 * INFO * [44484] atomIncorp_evenness/mean:10,sigma:1/30/20 Finished with 0
2015-08-08 08:15:20,201 * INFO * [47296] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/8
2015-08-08 08:15:23,061 * INFO * [44463] atomIncorp_evenness/mean:10,sigma:1/20/6 Finished with 0
2015-08-08 08:15:23,063 * INFO * [47337] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/3
2015-08-08 08:15:26,269 * INFO * [44865] atomIncorp_evenness/mean:10,sigma:1/30/3 Finished with 0
2015-08-08 08:15:26,272 * INFO * [47422] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/13
2015-08-08 08:15:27,108 * INFO * [44609] atomIncorp_evenness/mean:10,sigma:1/30/19 Finished with 0
2015-08-08 08:15:27,111 * INFO * [47465] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/10
2015-08-08 08:15:27,828 * INFO * [44782] atomIncorp_evenness/mean:10,sigma:1/30/9 Finished with 0
2015-08-08 08:15:27,830 * INFO * [47500] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/2
2015-08-08 08:15:28,362 * INFO * [44848] atomIncorp_evenness/mean:10,sigma:1/30/8 Finished with 0
2015-08-08 08:15:28,364 * INFO * [47512] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/12
2015-08-08 08:15:29,835 * INFO * [44648] atomIncorp_evenness/mean:10,sigma:1/30/18 Finished with 0
2015-08-08 08:15:29,839 * INFO * [47562] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/1
2015-08-08 08:15:30,016 * INFO * [44725] atomIncorp_evenness/mean:10,sigma:1/30/16 Finished with 0
2015-08-08 08:15:30,018 * INFO * [47581] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/4
2015-08-08 08:15:31,103 * INFO * [45020] atomIncorp_evenness/mean:10,sigma:1/30/2 Finished with 0
2015-08-08 08:15:31,105 * INFO * [47604] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/5
2015-08-08 08:15:31,753 * INFO * [44708] atomIncorp_evenness/mean:10,sigma:1/30/11 Finished with 0
2015-08-08 08:15:31,756 * INFO * [47643] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/50/6
2015-08-08 08:15:33,461 * INFO * [44807] atomIncorp_evenness/mean:10,sigma:1/30/17 Finished with 0
2015-08-08 08:15:33,463 * INFO * [47686] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/20
2015-08-08 08:15:33,579 * INFO * [44600] atomIncorp_evenness/mean:10,sigma:1/30/7 Finished with 0
2015-08-08 08:15:33,582 * INFO * [47695] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/14
2015-08-08 08:15:35,720 * INFO * [45033] atomIncorp_evenness/mean:10,sigma:1/30/12 Finished with 0
2015-08-08 08:15:35,722 * INFO * [47772] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/7
2015-08-08 08:15:35,949 * INFO * [44691] atomIncorp_evenness/mean:10,sigma:1/30/15 Finished with 0
2015-08-08 08:15:35,952 * INFO * [47789] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/19
2015-08-08 08:15:37,870 * INFO * [44882] atomIncorp_evenness/mean:10,sigma:1/30/13 Finished with 0
2015-08-08 08:15:37,872 * INFO * [47830] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/18
2015-08-08 08:15:41,802 * INFO * [45305] atomIncorp_evenness/mean:10,sigma:1/30/6 Finished with 0
2015-08-08 08:15:41,805 * INFO * [47949] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/15
2015-08-08 08:15:42,157 * INFO * [44967] atomIncorp_evenness/mean:10,sigma:1/30/10 Finished with 0
2015-08-08 08:15:42,161 * INFO * [47974] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/11
2015-08-08 08:15:42,872 * INFO * [45267] atomIncorp_evenness/mean:10,sigma:1/30/4 Finished with 0
2015-08-08 08:15:42,874 * INFO * [48005] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/16
2015-08-08 08:15:43,823 * INFO * [45259] atomIncorp_evenness/mean:10,sigma:1/30/1 Finished with 0
2015-08-08 08:15:43,826 * INFO * [48044] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/9
2015-08-08 08:15:51,182 * INFO * [45284] atomIncorp_evenness/mean:10,sigma:1/30/5 Finished with 0
2015-08-08 08:15:51,185 * INFO * [48273] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/17
2015-08-08 08:16:40,982 * INFO * [46925] atomIncorp_evenness/mean:10,sigma:1/50/14 Finished with 0
2015-08-08 08:16:40,985 * INFO * [49588] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/8
2015-08-08 08:16:43,342 * INFO * [46937] atomIncorp_evenness/mean:10,sigma:1/50/7 Finished with 0
2015-08-08 08:16:43,345 * INFO * [49651] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/3
2015-08-08 08:16:45,548 * INFO * [46894] atomIncorp_evenness/mean:10,sigma:1/50/20 Finished with 0
2015-08-08 08:16:45,551 * INFO * [49695] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/13
2015-08-08 08:16:51,628 * INFO * [46989] atomIncorp_evenness/mean:10,sigma:1/50/19 Finished with 0
2015-08-08 08:16:51,630 * INFO * [49850] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/10
2015-08-08 08:16:53,141 * INFO * [47264] atomIncorp_evenness/mean:10,sigma:1/50/9 Finished with 0
2015-08-08 08:16:53,144 * INFO * [49889] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/2
2015-08-08 08:16:56,093 * INFO * [47197] atomIncorp_evenness/mean:10,sigma:1/50/15 Finished with 0
2015-08-08 08:16:56,096 * INFO * [49950] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/12
2015-08-08 08:16:58,845 * INFO * [47273] atomIncorp_evenness/mean:10,sigma:1/50/17 Finished with 0
2015-08-08 08:16:58,847 * INFO * [50043] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/1
2015-08-08 08:16:59,446 * INFO * [47106] atomIncorp_evenness/mean:10,sigma:1/50/18 Finished with 0
2015-08-08 08:16:59,448 * INFO * [50070] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/4
2015-08-08 08:17:01,713 * INFO * [47422] atomIncorp_evenness/mean:10,sigma:1/50/13 Finished with 0
2015-08-08 08:17:01,716 * INFO * [50145] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/5
2015-08-08 08:17:01,778 * INFO * [47245] atomIncorp_evenness/mean:10,sigma:1/50/16 Finished with 0
2015-08-08 08:17:01,781 * INFO * [50154] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/75/6
2015-08-08 08:17:02,804 * INFO * [47212] atomIncorp_evenness/mean:10,sigma:1/50/11 Finished with 0
2015-08-08 08:17:02,806 * INFO * [50182] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/20
2015-08-08 08:17:04,016 * INFO * [47337] atomIncorp_evenness/mean:10,sigma:1/50/3 Finished with 0
2015-08-08 08:17:04,019 * INFO * [50199] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/14
2015-08-08 08:17:04,479 * INFO * [47296] atomIncorp_evenness/mean:10,sigma:1/50/8 Finished with 0
2015-08-08 08:17:04,481 * INFO * [50208] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/7
2015-08-08 08:17:08,316 * INFO * [47465] atomIncorp_evenness/mean:10,sigma:1/50/10 Finished with 0
2015-08-08 08:17:08,319 * INFO * [50305] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/19
2015-08-08 08:17:08,986 * INFO * [47562] atomIncorp_evenness/mean:10,sigma:1/50/1 Finished with 0
2015-08-08 08:17:08,989 * INFO * [50364] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/18
2015-08-08 08:17:09,518 * INFO * [47789] atomIncorp_evenness/mean:10,sigma:1/75/19 Finished with 0
2015-08-08 08:17:09,520 * INFO * [50395] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/15
2015-08-08 08:17:11,011 * INFO * [47604] atomIncorp_evenness/mean:10,sigma:1/50/5 Finished with 0
2015-08-08 08:17:11,014 * INFO * [50428] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/11
2015-08-08 08:17:12,028 * INFO * [47686] atomIncorp_evenness/mean:10,sigma:1/75/20 Finished with 0
2015-08-08 08:17:12,031 * INFO * [50459] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/16
2015-08-08 08:17:12,526 * INFO * [47512] atomIncorp_evenness/mean:10,sigma:1/50/12 Finished with 0
2015-08-08 08:17:12,529 * INFO * [50470] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/9
2015-08-08 08:17:13,677 * INFO * [47695] atomIncorp_evenness/mean:10,sigma:1/75/14 Finished with 0
2015-08-08 08:17:13,680 * INFO * [50517] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/17
2015-08-08 08:17:14,305 * INFO * [48005] atomIncorp_evenness/mean:10,sigma:1/75/16 Finished with 0
2015-08-08 08:17:14,307 * INFO * [50568] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/8
2015-08-08 08:17:15,432 * INFO * [47581] atomIncorp_evenness/mean:10,sigma:1/50/4 Finished with 0
2015-08-08 08:17:15,435 * INFO * [50607] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/3
2015-08-08 08:17:17,595 * INFO * [47949] atomIncorp_evenness/mean:10,sigma:1/75/15 Finished with 0
2015-08-08 08:17:17,598 * INFO * [50666] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/13
2015-08-08 08:17:17,712 * INFO * [47643] atomIncorp_evenness/mean:10,sigma:1/50/6 Finished with 0
2015-08-08 08:17:17,715 * INFO * [50675] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/10
2015-08-08 08:17:20,155 * INFO * [48044] atomIncorp_evenness/mean:10,sigma:1/75/9 Finished with 0
2015-08-08 08:17:20,158 * INFO * [50734] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/2
2015-08-08 08:17:20,924 * INFO * [47772] atomIncorp_evenness/mean:10,sigma:1/75/7 Finished with 0
2015-08-08 08:17:20,927 * INFO * [50757] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/12
2015-08-08 08:17:21,409 * INFO * [47500] atomIncorp_evenness/mean:10,sigma:1/50/2 Finished with 0
2015-08-08 08:17:21,412 * INFO * [50766] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/1
2015-08-08 08:17:23,566 * INFO * [47974] atomIncorp_evenness/mean:10,sigma:1/75/11 Finished with 0
2015-08-08 08:17:23,568 * INFO * [50839] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/4
2015-08-08 08:17:26,921 * INFO * [47830] atomIncorp_evenness/mean:10,sigma:1/75/18 Finished with 0
2015-08-08 08:17:26,924 * INFO * [50944] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/5
2015-08-08 08:17:30,351 * INFO * [48273] atomIncorp_evenness/mean:10,sigma:1/75/17 Finished with 0
2015-08-08 08:17:30,354 * INFO * [51075] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/15/6
2015-08-08 08:18:22,523 * INFO * [49651] atomIncorp_evenness/mean:10,sigma:1/75/3 Finished with 0
2015-08-08 08:18:22,525 * INFO * [52452] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/20
2015-08-08 08:18:25,060 * INFO * [49588] atomIncorp_evenness/mean:10,sigma:1/75/8 Finished with 0
2015-08-08 08:18:25,063 * INFO * [52506] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/14
2015-08-08 08:18:27,560 * INFO * [49695] atomIncorp_evenness/mean:10,sigma:1/75/13 Finished with 0
2015-08-08 08:18:27,563 * INFO * [52568] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/7
2015-08-08 08:18:28,509 * INFO * [49889] atomIncorp_evenness/mean:10,sigma:1/75/2 Finished with 0
2015-08-08 08:18:28,511 * INFO * [52593] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/19
2015-08-08 08:18:33,942 * INFO * [49850] atomIncorp_evenness/mean:10,sigma:1/75/10 Finished with 0
2015-08-08 08:18:33,945 * INFO * [52737] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/18
2015-08-08 08:18:37,382 * INFO * [50199] atomIncorp_evenness/mean:10,sigma:1/15/14 Finished with 0
2015-08-08 08:18:37,385 * INFO * [52814] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/15
2015-08-08 08:18:37,841 * INFO * [50070] atomIncorp_evenness/mean:10,sigma:1/75/4 Finished with 0
2015-08-08 08:18:37,844 * INFO * [52839] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/11
2015-08-08 08:18:39,507 * INFO * [50145] atomIncorp_evenness/mean:10,sigma:1/75/5 Finished with 0
2015-08-08 08:18:39,509 * INFO * [52892] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/16
2015-08-08 08:18:41,375 * INFO * [49950] atomIncorp_evenness/mean:10,sigma:1/75/12 Finished with 0
2015-08-08 08:18:41,378 * INFO * [52925] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/9
2015-08-08 08:18:41,891 * INFO * [50043] atomIncorp_evenness/mean:10,sigma:1/75/1 Finished with 0
2015-08-08 08:18:41,895 * INFO * [52934] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/17
2015-08-08 08:18:44,849 * INFO * [50182] atomIncorp_evenness/mean:10,sigma:1/15/20 Finished with 0
2015-08-08 08:18:44,852 * INFO * [53049] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/8
2015-08-08 08:18:44,898 * INFO * [50305] atomIncorp_evenness/mean:10,sigma:1/15/19 Finished with 0
2015-08-08 08:18:44,901 * INFO * [53058] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/3
2015-08-08 08:18:45,333 * INFO * [50154] atomIncorp_evenness/mean:10,sigma:1/75/6 Finished with 0
2015-08-08 08:18:45,336 * INFO * [53077] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/13
2015-08-08 08:18:45,423 * INFO * [50208] atomIncorp_evenness/mean:10,sigma:1/15/7 Finished with 0
2015-08-08 08:18:45,426 * INFO * [53096] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/10
2015-08-08 08:18:47,909 * INFO * [50517] atomIncorp_evenness/mean:10,sigma:1/15/17 Finished with 0
2015-08-08 08:18:47,911 * INFO * [53184] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/2
2015-08-08 08:18:49,507 * INFO * [50568] atomIncorp_evenness/mean:10,sigma:1/15/8 Finished with 0
2015-08-08 08:18:49,509 * INFO * [53243] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/12
2015-08-08 08:18:52,595 * INFO * [50428] atomIncorp_evenness/mean:10,sigma:1/15/11 Finished with 0
2015-08-08 08:18:52,598 * INFO * [53327] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/1
2015-08-08 08:18:54,129 * INFO * [50459] atomIncorp_evenness/mean:10,sigma:1/15/16 Finished with 0
2015-08-08 08:18:54,132 * INFO * [53359] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/4
2015-08-08 08:18:54,922 * INFO * [50364] atomIncorp_evenness/mean:10,sigma:1/15/18 Finished with 0
2015-08-08 08:18:54,925 * INFO * [53402] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/5
2015-08-08 08:18:54,931 * INFO * [50470] atomIncorp_evenness/mean:10,sigma:1/15/9 Finished with 0
2015-08-08 08:18:54,935 * INFO * [53409] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/0/6
2015-08-08 08:18:55,693 * INFO * [50395] atomIncorp_evenness/mean:10,sigma:1/15/15 Finished with 0
2015-08-08 08:18:55,696 * INFO * [53464] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/20
2015-08-08 08:18:57,305 * INFO * [50607] atomIncorp_evenness/mean:10,sigma:1/15/3 Finished with 0
2015-08-08 08:18:57,307 * INFO * [53503] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/14
2015-08-08 08:18:57,977 * INFO * [50666] atomIncorp_evenness/mean:10,sigma:1/15/13 Finished with 0
2015-08-08 08:18:57,980 * INFO * [53526] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/7
2015-08-08 08:18:59,226 * INFO * [50766] atomIncorp_evenness/mean:10,sigma:1/15/1 Finished with 0
2015-08-08 08:18:59,228 * INFO * [53575] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/19
2015-08-08 08:18:59,470 * INFO * [50675] atomIncorp_evenness/mean:10,sigma:1/15/10 Finished with 0
2015-08-08 08:18:59,472 * INFO * [53584] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/18
2015-08-08 08:19:03,275 * INFO * [50734] atomIncorp_evenness/mean:10,sigma:1/15/2 Finished with 0
2015-08-08 08:19:03,277 * INFO * [53695] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/15
2015-08-08 08:19:04,692 * INFO * [50839] atomIncorp_evenness/mean:10,sigma:1/15/4 Finished with 0
2015-08-08 08:19:04,695 * INFO * [53726] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/11
2015-08-08 08:19:08,030 * INFO * [50757] atomIncorp_evenness/mean:10,sigma:1/15/12 Finished with 0
2015-08-08 08:19:08,033 * INFO * [53843] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/16
2015-08-08 08:19:08,033 * INFO * [50944] atomIncorp_evenness/mean:10,sigma:1/15/5 Finished with 0
2015-08-08 08:19:08,037 * INFO * [53845] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/9
2015-08-08 08:19:12,137 * INFO * [51075] atomIncorp_evenness/mean:10,sigma:1/15/6 Finished with 0
2015-08-08 08:19:12,140 * INFO * [53971] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/17
2015-08-08 08:19:58,650 * INFO * [52452] atomIncorp_evenness/mean:10,sigma:1/0/20 Finished with 0
2015-08-08 08:19:58,653 * INFO * [55212] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/8
2015-08-08 08:20:02,243 * INFO * [52506] atomIncorp_evenness/mean:10,sigma:1/0/14 Finished with 0
2015-08-08 08:20:02,246 * INFO * [55297] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/3
2015-08-08 08:20:03,856 * INFO * [52568] atomIncorp_evenness/mean:10,sigma:1/0/7 Finished with 0
2015-08-08 08:20:03,858 * INFO * [55328] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/13
2015-08-08 08:20:06,529 * INFO * [52593] atomIncorp_evenness/mean:10,sigma:1/0/19 Finished with 0
2015-08-08 08:20:06,531 * INFO * [55397] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/10
2015-08-08 08:20:11,699 * INFO * [52839] atomIncorp_evenness/mean:10,sigma:1/0/11 Finished with 0
2015-08-08 08:20:11,702 * INFO * [55548] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/2
2015-08-08 08:20:13,447 * INFO * [52892] atomIncorp_evenness/mean:10,sigma:1/0/16 Finished with 0
2015-08-08 08:20:13,450 * INFO * [55583] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/12
2015-08-08 08:20:13,824 * INFO * [52737] atomIncorp_evenness/mean:10,sigma:1/0/18 Finished with 0
2015-08-08 08:20:13,828 * INFO * [55606] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/1
2015-08-08 08:20:15,900 * INFO * [52814] atomIncorp_evenness/mean:10,sigma:1/0/15 Finished with 0
2015-08-08 08:20:15,903 * INFO * [55661] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/4
2015-08-08 08:20:17,692 * INFO * [53077] atomIncorp_evenness/mean:10,sigma:1/0/13 Finished with 0
2015-08-08 08:20:17,695 * INFO * [55686] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/5
2015-08-08 08:20:21,319 * INFO * [52925] atomIncorp_evenness/mean:10,sigma:1/0/9 Finished with 0
2015-08-08 08:20:21,321 * INFO * [55815] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/100/6
2015-08-08 08:20:22,666 * INFO * [52934] atomIncorp_evenness/mean:10,sigma:1/0/17 Finished with 0
2015-08-08 08:20:22,669 * INFO * [55854] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/20
2015-08-08 08:20:23,999 * INFO * [53096] atomIncorp_evenness/mean:10,sigma:1/0/10 Finished with 0
2015-08-08 08:20:24,002 * INFO * [55896] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/14
2015-08-08 08:20:28,732 * INFO * [53049] atomIncorp_evenness/mean:10,sigma:1/0/8 Finished with 0
2015-08-08 08:20:28,734 * INFO * [55990] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/7
2015-08-08 08:20:29,566 * INFO * [53058] atomIncorp_evenness/mean:10,sigma:1/0/3 Finished with 0
2015-08-08 08:20:29,569 * INFO * [56047] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/19
2015-08-08 08:20:32,546 * INFO * [53464] atomIncorp_evenness/mean:10,sigma:1/100/20 Finished with 0
2015-08-08 08:20:32,548 * INFO * [56114] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/18
2015-08-08 08:20:34,449 * INFO * [53184] atomIncorp_evenness/mean:10,sigma:1/0/2 Finished with 0
2015-08-08 08:20:34,452 * INFO * [56197] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/15
2015-08-08 08:20:34,539 * INFO * [53327] atomIncorp_evenness/mean:10,sigma:1/0/1 Finished with 0
2015-08-08 08:20:34,542 * INFO * [56206] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/11
2015-08-08 08:20:35,300 * INFO * [53359] atomIncorp_evenness/mean:10,sigma:1/0/4 Finished with 0
2015-08-08 08:20:35,303 * INFO * [56235] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/16
2015-08-08 08:20:35,314 * INFO * [53526] atomIncorp_evenness/mean:10,sigma:1/100/7 Finished with 0
2015-08-08 08:20:35,316 * INFO * [56242] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/9
2015-08-08 08:20:35,988 * INFO * [53243] atomIncorp_evenness/mean:10,sigma:1/0/12 Finished with 0
2015-08-08 08:20:35,991 * INFO * [56257] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/17
2015-08-08 08:20:36,189 * INFO * [53409] atomIncorp_evenness/mean:10,sigma:1/0/6 Finished with 0
2015-08-08 08:20:36,191 * INFO * [56266] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/8
2015-08-08 08:20:39,231 * INFO * [53575] atomIncorp_evenness/mean:10,sigma:1/100/19 Finished with 0
2015-08-08 08:20:39,233 * INFO * [56345] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/3
2015-08-08 08:20:39,238 * INFO * [53503] atomIncorp_evenness/mean:10,sigma:1/100/14 Finished with 0
2015-08-08 08:20:39,241 * INFO * [56348] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/13
2015-08-08 08:20:42,442 * INFO * [53402] atomIncorp_evenness/mean:10,sigma:1/0/5 Finished with 0
2015-08-08 08:20:42,445 * INFO * [56461] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/10
2015-08-08 08:20:47,238 * INFO * [53584] atomIncorp_evenness/mean:10,sigma:1/100/18 Finished with 0
2015-08-08 08:20:47,240 * INFO * [56610] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/2
2015-08-08 08:20:47,532 * INFO * [53971] atomIncorp_evenness/mean:10,sigma:1/100/17 Finished with 0
2015-08-08 08:20:47,535 * INFO * [56639] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/12
2015-08-08 08:20:48,476 * INFO * [53843] atomIncorp_evenness/mean:10,sigma:1/100/16 Finished with 0
2015-08-08 08:20:48,479 * INFO * [56668] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/1
2015-08-08 08:20:50,170 * INFO * [53695] atomIncorp_evenness/mean:10,sigma:1/100/15 Finished with 0
2015-08-08 08:20:50,173 * INFO * [56709] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/4
2015-08-08 08:20:52,163 * INFO * [53726] atomIncorp_evenness/mean:10,sigma:1/100/11 Finished with 0
2015-08-08 08:20:52,166 * INFO * [56776] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/5
2015-08-08 08:20:53,137 * INFO * [53845] atomIncorp_evenness/mean:10,sigma:1/100/9 Finished with 0
2015-08-08 08:20:53,141 * INFO * [56801] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/10/6
2015-08-08 08:21:37,316 * INFO * [55212] atomIncorp_evenness/mean:10,sigma:1/100/8 Finished with 0
2015-08-08 08:21:37,319 * INFO * [57968] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/20
2015-08-08 08:21:41,547 * INFO * [55328] atomIncorp_evenness/mean:10,sigma:1/100/13 Finished with 0
2015-08-08 08:21:41,549 * INFO * [58107] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/14
2015-08-08 08:21:43,229 * INFO * [55397] atomIncorp_evenness/mean:10,sigma:1/100/10 Finished with 0
2015-08-08 08:21:43,232 * INFO * [58146] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/7
2015-08-08 08:21:44,525 * INFO * [55297] atomIncorp_evenness/mean:10,sigma:1/100/3 Finished with 0
2015-08-08 08:21:44,527 * INFO * [58173] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/19
2015-08-08 08:21:49,518 * INFO * [55686] atomIncorp_evenness/mean:10,sigma:1/100/5 Finished with 0
2015-08-08 08:21:49,524 * INFO * [58276] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/18
2015-08-08 08:21:52,501 * INFO * [55548] atomIncorp_evenness/mean:10,sigma:1/100/2 Finished with 0
2015-08-08 08:21:52,503 * INFO * [58369] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/15
2015-08-08 08:21:53,957 * INFO * [55583] atomIncorp_evenness/mean:10,sigma:1/100/12 Finished with 0
2015-08-08 08:21:53,959 * INFO * [58426] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/11
2015-08-08 08:21:55,654 * INFO * [55815] atomIncorp_evenness/mean:10,sigma:1/100/6 Finished with 0
2015-08-08 08:21:55,656 * INFO * [58481] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/16
2015-08-08 08:21:56,738 * INFO * [55661] atomIncorp_evenness/mean:10,sigma:1/100/4 Finished with 0
2015-08-08 08:21:56,741 * INFO * [58508] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/9
2015-08-08 08:22:00,700 * INFO * [56047] atomIncorp_evenness/mean:10,sigma:1/10/19 Finished with 0
2015-08-08 08:22:00,703 * INFO * [58595] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/17
2015-08-08 08:22:03,961 * INFO * [55606] atomIncorp_evenness/mean:10,sigma:1/100/1 Finished with 0
2015-08-08 08:22:03,963 * INFO * [58700] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/8
2015-08-08 08:22:05,749 * INFO * [56114] atomIncorp_evenness/mean:10,sigma:1/10/18 Finished with 0
2015-08-08 08:22:05,752 * INFO * [58741] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/3
2015-08-08 08:22:05,911 * INFO * [55990] atomIncorp_evenness/mean:10,sigma:1/10/7 Finished with 0
2015-08-08 08:22:05,915 * INFO * [58750] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/13
2015-08-08 08:22:08,747 * INFO * [55896] atomIncorp_evenness/mean:10,sigma:1/10/14 Finished with 0
2015-08-08 08:22:08,751 * INFO * [58843] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/10
2015-08-08 08:22:09,885 * INFO * [55854] atomIncorp_evenness/mean:10,sigma:1/10/20 Finished with 0
2015-08-08 08:22:09,887 * INFO * [58866] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/2
2015-08-08 08:22:12,092 * INFO * [56235] atomIncorp_evenness/mean:10,sigma:1/10/16 Finished with 0
2015-08-08 08:22:12,096 * INFO * [58911] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/12
2015-08-08 08:22:15,107 * INFO * [56345] atomIncorp_evenness/mean:10,sigma:1/10/3 Finished with 0
2015-08-08 08:22:15,110 * INFO * [59004] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/1
2015-08-08 08:22:16,234 * INFO * [56242] atomIncorp_evenness/mean:10,sigma:1/10/9 Finished with 0
2015-08-08 08:22:16,237 * INFO * [59041] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/4
2015-08-08 08:22:16,351 * INFO * [56266] atomIncorp_evenness/mean:10,sigma:1/10/8 Finished with 0
2015-08-08 08:22:16,354 * INFO * [59054] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/5
2015-08-08 08:22:17,642 * INFO * [56257] atomIncorp_evenness/mean:10,sigma:1/10/17 Finished with 0
2015-08-08 08:22:17,644 * INFO * [59087] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/5/6
2015-08-08 08:22:18,923 * INFO * [56197] atomIncorp_evenness/mean:10,sigma:1/10/15 Finished with 0
2015-08-08 08:22:18,926 * INFO * [59128] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/20
2015-08-08 08:22:21,193 * INFO * [56348] atomIncorp_evenness/mean:10,sigma:1/10/13 Finished with 0
2015-08-08 08:22:21,195 * INFO * [59213] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/14
2015-08-08 08:22:21,785 * INFO * [56206] atomIncorp_evenness/mean:10,sigma:1/10/11 Finished with 0
2015-08-08 08:22:21,787 * INFO * [59233] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/7
2015-08-08 08:22:21,830 * INFO * [56461] atomIncorp_evenness/mean:10,sigma:1/10/10 Finished with 0
2015-08-08 08:22:21,833 * INFO * [59251] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/19
2015-08-08 08:22:23,966 * INFO * [56639] atomIncorp_evenness/mean:10,sigma:1/10/12 Finished with 0
2015-08-08 08:22:23,969 * INFO * [59326] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/18
2015-08-08 08:22:26,774 * INFO * [56668] atomIncorp_evenness/mean:10,sigma:1/10/1 Finished with 0
2015-08-08 08:22:26,777 * INFO * [59401] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/15
2015-08-08 08:22:30,058 * INFO * [56801] atomIncorp_evenness/mean:10,sigma:1/10/6 Finished with 0
2015-08-08 08:22:30,060 * INFO * [59540] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/11
2015-08-08 08:22:31,770 * INFO * [56610] atomIncorp_evenness/mean:10,sigma:1/10/2 Finished with 0
2015-08-08 08:22:31,773 * INFO * [59559] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/16
2015-08-08 08:22:33,803 * INFO * [56776] atomIncorp_evenness/mean:10,sigma:1/10/5 Finished with 0
2015-08-08 08:22:33,805 * INFO * [59596] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/9
2015-08-08 08:22:37,023 * INFO * [56709] atomIncorp_evenness/mean:10,sigma:1/10/4 Finished with 0
2015-08-08 08:22:37,026 * INFO * [59741] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/17
2015-08-08 08:23:13,492 * INFO * [58146] atomIncorp_evenness/mean:10,sigma:1/5/7 Finished with 0
2015-08-08 08:23:13,495 * INFO * [60694] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/8
2015-08-08 08:23:23,197 * INFO * [58276] atomIncorp_evenness/mean:10,sigma:1/5/18 Finished with 0
2015-08-08 08:23:23,200 * INFO * [60945] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/3
2015-08-08 08:23:24,598 * INFO * [58107] atomIncorp_evenness/mean:10,sigma:1/5/14 Finished with 0
2015-08-08 08:23:24,601 * INFO * [61006] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/13
2015-08-08 08:23:25,207 * INFO * [57968] atomIncorp_evenness/mean:10,sigma:1/5/20 Finished with 0
2015-08-08 08:23:25,209 * INFO * [61015] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/10
2015-08-08 08:23:30,362 * INFO * [58426] atomIncorp_evenness/mean:10,sigma:1/5/11 Finished with 0
2015-08-08 08:23:30,365 * INFO * [61111] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/2
2015-08-08 08:23:34,439 * INFO * [58173] atomIncorp_evenness/mean:10,sigma:1/5/19 Finished with 0
2015-08-08 08:23:34,442 * INFO * [61217] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/12
2015-08-08 08:23:35,696 * INFO * [58369] atomIncorp_evenness/mean:10,sigma:1/5/15 Finished with 0
2015-08-08 08:23:35,698 * INFO * [61280] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/1
2015-08-08 08:23:36,023 * INFO * [58481] atomIncorp_evenness/mean:10,sigma:1/5/16 Finished with 0
2015-08-08 08:23:36,025 * INFO * [61292] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/4
2015-08-08 08:23:36,684 * INFO * [58700] atomIncorp_evenness/mean:10,sigma:1/5/8 Finished with 0
2015-08-08 08:23:36,686 * INFO * [61320] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/5
2015-08-08 08:23:38,356 * INFO * [58595] atomIncorp_evenness/mean:10,sigma:1/5/17 Finished with 0
2015-08-08 08:23:38,358 * INFO * [61373] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:1/40/6
2015-08-08 08:23:39,395 * INFO * [58508] atomIncorp_evenness/mean:10,sigma:1/5/9 Finished with 0
2015-08-08 08:23:39,397 * INFO * [61388] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/20
2015-08-08 08:23:43,494 * INFO * [58741] atomIncorp_evenness/mean:10,sigma:1/5/3 Finished with 0
2015-08-08 08:23:43,497 * INFO * [61471] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/14
2015-08-08 08:23:46,001 * INFO * [59087] atomIncorp_evenness/mean:10,sigma:1/5/6 Finished with 0
2015-08-08 08:23:46,004 * INFO * [61566] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/7
2015-08-08 08:23:46,341 * INFO * [58866] atomIncorp_evenness/mean:10,sigma:1/5/2 Finished with 0
2015-08-08 08:23:46,343 * INFO * [61584] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/19
2015-08-08 08:23:47,459 * INFO * [58750] atomIncorp_evenness/mean:10,sigma:1/5/13 Finished with 0
2015-08-08 08:23:47,462 * INFO * [61626] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/18
2015-08-08 08:23:49,421 * INFO * [58843] atomIncorp_evenness/mean:10,sigma:1/5/10 Finished with 0
2015-08-08 08:23:49,423 * INFO * [61691] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/15
2015-08-08 08:23:49,424 * INFO * [59041] atomIncorp_evenness/mean:10,sigma:1/5/4 Finished with 0
2015-08-08 08:23:49,426 * INFO * [61693] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/11
2015-08-08 08:23:52,099 * INFO * [59054] atomIncorp_evenness/mean:10,sigma:1/5/5 Finished with 0
2015-08-08 08:23:52,102 * INFO * [61741] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/16
2015-08-08 08:23:56,656 * INFO * [59004] atomIncorp_evenness/mean:10,sigma:1/5/1 Finished with 0
2015-08-08 08:23:56,659 * INFO * [61888] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/9
2015-08-08 08:23:57,892 * INFO * [58911] atomIncorp_evenness/mean:10,sigma:1/5/12 Finished with 0
2015-08-08 08:23:57,894 * INFO * [61921] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/17
2015-08-08 08:24:01,238 * INFO * [59233] atomIncorp_evenness/mean:10,sigma:1/40/7 Finished with 0
2015-08-08 08:24:01,241 * INFO * [62020] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/8
2015-08-08 08:24:02,248 * INFO * [59128] atomIncorp_evenness/mean:10,sigma:1/40/20 Finished with 0
2015-08-08 08:24:02,251 * INFO * [62061] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/3
2015-08-08 08:24:03,613 * INFO * [59326] atomIncorp_evenness/mean:10,sigma:1/40/18 Finished with 0
2015-08-08 08:24:03,616 * INFO * [62136] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/13
2015-08-08 08:24:03,970 * INFO * [59213] atomIncorp_evenness/mean:10,sigma:1/40/14 Finished with 0
2015-08-08 08:24:03,973 * INFO * [62145] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/10
2015-08-08 08:24:06,443 * INFO * [59251] atomIncorp_evenness/mean:10,sigma:1/40/19 Finished with 0
2015-08-08 08:24:06,445 * INFO * [62196] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/2
2015-08-08 08:24:08,921 * INFO * [59596] atomIncorp_evenness/mean:10,sigma:1/40/9 Finished with 0
2015-08-08 08:24:08,924 * INFO * [62281] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/12
2015-08-08 08:24:11,328 * INFO * [59559] atomIncorp_evenness/mean:10,sigma:1/40/16 Finished with 0
2015-08-08 08:24:11,330 * INFO * [62354] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/1
2015-08-08 08:24:13,479 * INFO * [59401] atomIncorp_evenness/mean:10,sigma:1/40/15 Finished with 0
2015-08-08 08:24:13,481 * INFO * [62431] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/4
2015-08-08 08:24:17,410 * INFO * [59741] atomIncorp_evenness/mean:10,sigma:1/40/17 Finished with 0
2015-08-08 08:24:17,412 * INFO * [62532] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/5
2015-08-08 08:24:17,857 * INFO * [59540] atomIncorp_evenness/mean:10,sigma:1/40/11 Finished with 0
2015-08-08 08:24:17,860 * INFO * [62549] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/20/6
2015-08-08 08:24:51,389 * INFO * [60694] atomIncorp_evenness/mean:10,sigma:1/40/8 Finished with 0
2015-08-08 08:24:51,393 * INFO * [63497] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/20
2015-08-08 08:25:00,767 * INFO * [60945] atomIncorp_evenness/mean:10,sigma:1/40/3 Finished with 0
2015-08-08 08:25:00,770 * INFO * [63744] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/14
2015-08-08 08:25:01,362 * INFO * [61006] atomIncorp_evenness/mean:10,sigma:1/40/13 Finished with 0
2015-08-08 08:25:01,364 * INFO * [63753] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/7
2015-08-08 08:25:08,427 * INFO * [61015] atomIncorp_evenness/mean:10,sigma:1/40/10 Finished with 0
2015-08-08 08:25:08,430 * INFO * [63935] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/19
2015-08-08 08:25:10,925 * INFO * [61217] atomIncorp_evenness/mean:10,sigma:1/40/12 Finished with 0
2015-08-08 08:25:10,927 * INFO * [63976] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/18
2015-08-08 08:25:11,559 * INFO * [61292] atomIncorp_evenness/mean:10,sigma:1/40/4 Finished with 0
2015-08-08 08:25:11,561 * INFO * [64031] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/15
2015-08-08 08:25:14,065 * INFO * [61111] atomIncorp_evenness/mean:10,sigma:1/40/2 Finished with 0
2015-08-08 08:25:14,067 * INFO * [64082] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/11
2015-08-08 08:25:15,690 * INFO * [61320] atomIncorp_evenness/mean:10,sigma:1/40/5 Finished with 0
2015-08-08 08:25:15,692 * INFO * [64133] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/16
2015-08-08 08:25:17,804 * INFO * [61471] atomIncorp_evenness/mean:10,sigma:2/20/14 Finished with 0
2015-08-08 08:25:17,807 * INFO * [64200] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/9
2015-08-08 08:25:18,045 * INFO * [61280] atomIncorp_evenness/mean:10,sigma:1/40/1 Finished with 0
2015-08-08 08:25:18,047 * INFO * [64215] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/17
2015-08-08 08:25:21,365 * INFO * [61388] atomIncorp_evenness/mean:10,sigma:2/20/20 Finished with 0
2015-08-08 08:25:21,368 * INFO * [64304] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/8
2015-08-08 08:25:26,121 * INFO * [61373] atomIncorp_evenness/mean:10,sigma:1/40/6 Finished with 0
2015-08-08 08:25:26,124 * INFO * [64429] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/3
2015-08-08 08:25:26,465 * INFO * [61584] atomIncorp_evenness/mean:10,sigma:2/20/19 Finished with 0
2015-08-08 08:25:26,467 * INFO * [64466] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/13
2015-08-08 08:25:28,855 * INFO * [61693] atomIncorp_evenness/mean:10,sigma:2/20/11 Finished with 0
2015-08-08 08:25:28,857 * INFO * [64527] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/10
2015-08-08 08:25:30,750 * INFO * [61566] atomIncorp_evenness/mean:10,sigma:2/20/7 Finished with 0
2015-08-08 08:25:30,753 * INFO * [64590] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/2
2015-08-08 08:25:33,165 * INFO * [61626] atomIncorp_evenness/mean:10,sigma:2/20/18 Finished with 0
2015-08-08 08:25:33,168 * INFO * [64629] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/12
2015-08-08 08:25:35,838 * INFO * [61888] atomIncorp_evenness/mean:10,sigma:2/20/9 Finished with 0
2015-08-08 08:25:35,841 * INFO * [64722] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/1
2015-08-08 08:25:36,082 * INFO * [61691] atomIncorp_evenness/mean:10,sigma:2/20/15 Finished with 0
2015-08-08 08:25:36,085 * INFO * [64731] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/4
2015-08-08 08:25:37,051 * INFO * [61741] atomIncorp_evenness/mean:10,sigma:2/20/16 Finished with 0
2015-08-08 08:25:37,054 * INFO * [64740] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/5
2015-08-08 08:25:41,522 * INFO * [62196] atomIncorp_evenness/mean:10,sigma:2/20/2 Finished with 0
2015-08-08 08:25:41,524 * INFO * [64891] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/30/6
2015-08-08 08:25:41,919 * INFO * [62061] atomIncorp_evenness/mean:10,sigma:2/20/3 Finished with 0
2015-08-08 08:25:41,921 * INFO * [64908] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/20
2015-08-08 08:25:41,936 * INFO * [62281] atomIncorp_evenness/mean:10,sigma:2/20/12 Finished with 0
2015-08-08 08:25:41,939 * INFO * [64915] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/14
2015-08-08 08:25:42,353 * INFO * [61921] atomIncorp_evenness/mean:10,sigma:2/20/17 Finished with 0
2015-08-08 08:25:42,355 * INFO * [64927] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/7
2015-08-08 08:25:43,433 * INFO * [62354] atomIncorp_evenness/mean:10,sigma:2/20/1 Finished with 0
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2015-08-08 08:25:43,902 * INFO * [62020] atomIncorp_evenness/mean:10,sigma:2/20/8 Finished with 0
2015-08-08 08:25:43,904 * INFO * [64986] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/18
2015-08-08 08:25:46,556 * INFO * [62145] atomIncorp_evenness/mean:10,sigma:2/20/10 Finished with 0
2015-08-08 08:25:46,558 * INFO * [65059] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/15
2015-08-08 08:25:47,877 * INFO * [62136] atomIncorp_evenness/mean:10,sigma:2/20/13 Finished with 0
2015-08-08 08:25:47,879 * INFO * [65122] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/11
2015-08-08 08:25:50,446 * INFO * [62532] atomIncorp_evenness/mean:10,sigma:2/20/5 Finished with 0
2015-08-08 08:25:50,449 * INFO * [65231] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/16
2015-08-08 08:25:56,717 * INFO * [62431] atomIncorp_evenness/mean:10,sigma:2/20/4 Finished with 0
2015-08-08 08:25:56,721 * INFO * [65412] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/9
2015-08-08 08:26:01,524 * INFO * [62549] atomIncorp_evenness/mean:10,sigma:2/20/6 Finished with 0
2015-08-08 08:26:01,527 * INFO * [65529] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/17
2015-08-08 08:26:31,661 * INFO * [63744] atomIncorp_evenness/mean:10,sigma:2/30/14 Finished with 0
2015-08-08 08:26:31,663 * INFO * [66322] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/8
2015-08-08 08:26:33,494 * INFO * [63497] atomIncorp_evenness/mean:10,sigma:2/30/20 Finished with 0
2015-08-08 08:26:33,497 * INFO * [66373] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/3
2015-08-08 08:26:41,441 * INFO * [63753] atomIncorp_evenness/mean:10,sigma:2/30/7 Finished with 0
2015-08-08 08:26:41,444 * INFO * [66580] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/13
2015-08-08 08:26:49,064 * INFO * [64082] atomIncorp_evenness/mean:10,sigma:2/30/11 Finished with 0
2015-08-08 08:26:49,066 * INFO * [66803] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/10
2015-08-08 08:26:49,525 * INFO * [64031] atomIncorp_evenness/mean:10,sigma:2/30/15 Finished with 0
2015-08-08 08:26:49,528 * INFO * [66817] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/2
2015-08-08 08:26:51,102 * INFO * [63976] atomIncorp_evenness/mean:10,sigma:2/30/18 Finished with 0
2015-08-08 08:26:51,104 * INFO * [66854] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/12
2015-08-08 08:26:53,105 * INFO * [64215] atomIncorp_evenness/mean:10,sigma:2/30/17 Finished with 0
2015-08-08 08:26:53,108 * INFO * [66900] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/1
2015-08-08 08:26:54,292 * INFO * [63935] atomIncorp_evenness/mean:10,sigma:2/30/19 Finished with 0
2015-08-08 08:26:54,294 * INFO * [66936] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/4
2015-08-08 08:26:54,727 * INFO * [64133] atomIncorp_evenness/mean:10,sigma:2/30/16 Finished with 0
2015-08-08 08:26:54,729 * INFO * [66955] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/5
2015-08-08 08:26:55,303 * INFO * [64304] atomIncorp_evenness/mean:10,sigma:2/30/8 Finished with 0
2015-08-08 08:26:55,305 * INFO * [66986] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/50/6
2015-08-08 08:26:58,644 * INFO * [64527] atomIncorp_evenness/mean:10,sigma:2/30/10 Finished with 0
2015-08-08 08:26:58,647 * INFO * [67071] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/20
2015-08-08 08:26:58,831 * INFO * [64429] atomIncorp_evenness/mean:10,sigma:2/30/3 Finished with 0
2015-08-08 08:26:58,834 * INFO * [67080] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/14
2015-08-08 08:27:03,003 * INFO * [64200] atomIncorp_evenness/mean:10,sigma:2/30/9 Finished with 0
2015-08-08 08:27:03,006 * INFO * [67211] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/7
2015-08-08 08:27:10,955 * INFO * [64629] atomIncorp_evenness/mean:10,sigma:2/30/12 Finished with 0
2015-08-08 08:27:10,958 * INFO * [67438] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/19
2015-08-08 08:27:12,016 * INFO * [64466] atomIncorp_evenness/mean:10,sigma:2/30/13 Finished with 0
2015-08-08 08:27:12,019 * INFO * [67481] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/18
2015-08-08 08:27:13,477 * INFO * [64722] atomIncorp_evenness/mean:10,sigma:2/30/1 Finished with 0
2015-08-08 08:27:13,479 * INFO * [67504] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/15
2015-08-08 08:27:14,383 * INFO * [64731] atomIncorp_evenness/mean:10,sigma:2/30/4 Finished with 0
2015-08-08 08:27:14,385 * INFO * [67513] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/11
2015-08-08 08:27:16,929 * INFO * [64590] atomIncorp_evenness/mean:10,sigma:2/30/2 Finished with 0
2015-08-08 08:27:16,931 * INFO * [67584] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/16
2015-08-08 08:27:18,751 * INFO * [64986] atomIncorp_evenness/mean:10,sigma:2/50/18 Finished with 0
2015-08-08 08:27:18,753 * INFO * [67667] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/9
2015-08-08 08:27:20,057 * INFO * [64740] atomIncorp_evenness/mean:10,sigma:2/30/5 Finished with 0
2015-08-08 08:27:20,059 * INFO * [67704] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/17
2015-08-08 08:27:20,985 * INFO * [64915] atomIncorp_evenness/mean:10,sigma:2/50/14 Finished with 0
2015-08-08 08:27:20,989 * INFO * [67713] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/8
2015-08-08 08:27:21,373 * INFO * [64927] atomIncorp_evenness/mean:10,sigma:2/50/7 Finished with 0
2015-08-08 08:27:21,376 * INFO * [67722] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/3
2015-08-08 08:27:24,780 * INFO * [64971] atomIncorp_evenness/mean:10,sigma:2/50/19 Finished with 0
2015-08-08 08:27:24,782 * INFO * [67889] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/13
2015-08-08 08:27:25,840 * INFO * [64908] atomIncorp_evenness/mean:10,sigma:2/50/20 Finished with 0
2015-08-08 08:27:25,843 * INFO * [67922] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/10
2015-08-08 08:27:26,245 * INFO * [64891] atomIncorp_evenness/mean:10,sigma:2/30/6 Finished with 0
2015-08-08 08:27:26,247 * INFO * [67937] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/2
2015-08-08 08:27:26,357 * INFO * [65231] atomIncorp_evenness/mean:10,sigma:2/50/16 Finished with 0
2015-08-08 08:27:26,360 * INFO * [67948] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/12
2015-08-08 08:27:26,386 * INFO * [65059] atomIncorp_evenness/mean:10,sigma:2/50/15 Finished with 0
2015-08-08 08:27:26,389 * INFO * [67956] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/1
2015-08-08 08:27:31,504 * INFO * [65122] atomIncorp_evenness/mean:10,sigma:2/50/11 Finished with 0
2015-08-08 08:27:31,507 * INFO * [68082] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/4
2015-08-08 08:27:36,056 * INFO * [65412] atomIncorp_evenness/mean:10,sigma:2/50/9 Finished with 0
2015-08-08 08:27:36,058 * INFO * [68243] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/5
2015-08-08 08:27:42,997 * INFO * [65529] atomIncorp_evenness/mean:10,sigma:2/50/17 Finished with 0
2015-08-08 08:27:43,001 * INFO * [68438] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/75/6
2015-08-08 08:28:09,290 * INFO * [66373] atomIncorp_evenness/mean:10,sigma:2/50/3 Finished with 0
2015-08-08 08:28:09,293 * INFO * [69131] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/20
2015-08-08 08:28:10,806 * INFO * [66322] atomIncorp_evenness/mean:10,sigma:2/50/8 Finished with 0
2015-08-08 08:28:10,809 * INFO * [69198] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/14
2015-08-08 08:28:18,926 * INFO * [66580] atomIncorp_evenness/mean:10,sigma:2/50/13 Finished with 0
2015-08-08 08:28:18,929 * INFO * [69401] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/7
2015-08-08 08:28:26,235 * INFO * [66900] atomIncorp_evenness/mean:10,sigma:2/50/1 Finished with 0
2015-08-08 08:28:26,237 * INFO * [69596] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/19
2015-08-08 08:28:30,248 * INFO * [66803] atomIncorp_evenness/mean:10,sigma:2/50/10 Finished with 0
2015-08-08 08:28:30,251 * INFO * [69681] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/18
2015-08-08 08:28:31,225 * INFO * [66986] atomIncorp_evenness/mean:10,sigma:2/50/6 Finished with 0
2015-08-08 08:28:31,227 * INFO * [69708] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/15
2015-08-08 08:28:34,559 * INFO * [66817] atomIncorp_evenness/mean:10,sigma:2/50/2 Finished with 0
2015-08-08 08:28:34,561 * INFO * [69790] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/11
2015-08-08 08:28:37,099 * INFO * [66955] atomIncorp_evenness/mean:10,sigma:2/50/5 Finished with 0
2015-08-08 08:28:37,102 * INFO * [69874] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/16
2015-08-08 08:28:37,835 * INFO * [66854] atomIncorp_evenness/mean:10,sigma:2/50/12 Finished with 0
2015-08-08 08:28:37,838 * INFO * [69907] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/9
2015-08-08 08:28:38,967 * INFO * [66936] atomIncorp_evenness/mean:10,sigma:2/50/4 Finished with 0
2015-08-08 08:28:38,969 * INFO * [69946] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/17
2015-08-08 08:28:41,134 * INFO * [67071] atomIncorp_evenness/mean:10,sigma:2/75/20 Finished with 0
2015-08-08 08:28:41,137 * INFO * [69989] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/8
2015-08-08 08:28:41,834 * INFO * [67080] atomIncorp_evenness/mean:10,sigma:2/75/14 Finished with 0
2015-08-08 08:28:41,837 * INFO * [70008] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/3
2015-08-08 08:28:44,914 * INFO * [67211] atomIncorp_evenness/mean:10,sigma:2/75/7 Finished with 0
2015-08-08 08:28:44,917 * INFO * [70095] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/13
2015-08-08 08:28:48,612 * INFO * [67438] atomIncorp_evenness/mean:10,sigma:2/75/19 Finished with 0
2015-08-08 08:28:48,615 * INFO * [70206] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/10
2015-08-08 08:28:50,101 * INFO * [67504] atomIncorp_evenness/mean:10,sigma:2/75/15 Finished with 0
2015-08-08 08:28:50,104 * INFO * [70265] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/2
2015-08-08 08:28:50,806 * INFO * [67513] atomIncorp_evenness/mean:10,sigma:2/75/11 Finished with 0
2015-08-08 08:28:50,809 * INFO * [70286] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/12
2015-08-08 08:28:54,267 * INFO * [67481] atomIncorp_evenness/mean:10,sigma:2/75/18 Finished with 0
2015-08-08 08:28:54,271 * INFO * [70359] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/1
2015-08-08 08:28:56,345 * INFO * [67584] atomIncorp_evenness/mean:10,sigma:2/75/16 Finished with 0
2015-08-08 08:28:56,348 * INFO * [70426] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/4
2015-08-08 08:28:58,284 * INFO * [67667] atomIncorp_evenness/mean:10,sigma:2/75/9 Finished with 0
2015-08-08 08:28:58,287 * INFO * [70491] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/5
2015-08-08 08:28:58,551 * INFO * [67704] atomIncorp_evenness/mean:10,sigma:2/75/17 Finished with 0
2015-08-08 08:28:58,553 * INFO * [70510] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/15/6
2015-08-08 08:28:59,161 * INFO * [67722] atomIncorp_evenness/mean:10,sigma:2/75/3 Finished with 0
2015-08-08 08:28:59,164 * INFO * [70525] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/20
2015-08-08 08:29:01,120 * INFO * [67937] atomIncorp_evenness/mean:10,sigma:2/75/2 Finished with 0
2015-08-08 08:29:01,123 * INFO * [70566] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/14
2015-08-08 08:29:01,283 * INFO * [67889] atomIncorp_evenness/mean:10,sigma:2/75/13 Finished with 0
2015-08-08 08:29:01,286 * INFO * [70594] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/7
2015-08-08 08:29:02,584 * INFO * [67922] atomIncorp_evenness/mean:10,sigma:2/75/10 Finished with 0
2015-08-08 08:29:02,587 * INFO * [70652] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/19
2015-08-08 08:29:03,342 * INFO * [67948] atomIncorp_evenness/mean:10,sigma:2/75/12 Finished with 0
2015-08-08 08:29:03,344 * INFO * [70669] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/18
2015-08-08 08:29:06,391 * INFO * [67713] atomIncorp_evenness/mean:10,sigma:2/75/8 Finished with 0
2015-08-08 08:29:06,394 * INFO * [70796] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/15
2015-08-08 08:29:07,280 * INFO * [67956] atomIncorp_evenness/mean:10,sigma:2/75/1 Finished with 0
2015-08-08 08:29:07,283 * INFO * [70836] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/11
2015-08-08 08:29:14,489 * INFO * [68082] atomIncorp_evenness/mean:10,sigma:2/75/4 Finished with 0
2015-08-08 08:29:14,491 * INFO * [71033] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/16
2015-08-08 08:29:16,760 * INFO * [68243] atomIncorp_evenness/mean:10,sigma:2/75/5 Finished with 0
2015-08-08 08:29:16,763 * INFO * [71074] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/9
2015-08-08 08:29:20,216 * INFO * [68438] atomIncorp_evenness/mean:10,sigma:2/75/6 Finished with 0
2015-08-08 08:29:20,219 * INFO * [71170] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/17
2015-08-08 08:29:43,664 * INFO * [69198] atomIncorp_evenness/mean:10,sigma:2/15/14 Finished with 0
2015-08-08 08:29:43,667 * INFO * [71834] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/8
2015-08-08 08:29:46,719 * INFO * [69131] atomIncorp_evenness/mean:10,sigma:2/15/20 Finished with 0
2015-08-08 08:29:46,722 * INFO * [71885] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/3
2015-08-08 08:30:00,036 * INFO * [69401] atomIncorp_evenness/mean:10,sigma:2/15/7 Finished with 0
2015-08-08 08:30:00,039 * INFO * [72266] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/13
2015-08-08 08:30:00,600 * INFO * [69681] atomIncorp_evenness/mean:10,sigma:2/15/18 Finished with 0
2015-08-08 08:30:00,603 * INFO * [72281] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/10
2015-08-08 08:30:12,058 * INFO * [69596] atomIncorp_evenness/mean:10,sigma:2/15/19 Finished with 0
2015-08-08 08:30:12,061 * INFO * [72560] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/2
2015-08-08 08:30:12,768 * INFO * [69874] atomIncorp_evenness/mean:10,sigma:2/15/16 Finished with 0
2015-08-08 08:30:12,771 * INFO * [72582] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/12
2015-08-08 08:30:13,714 * INFO * [69790] atomIncorp_evenness/mean:10,sigma:2/15/11 Finished with 0
2015-08-08 08:30:13,717 * INFO * [72630] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/1
2015-08-08 08:30:16,462 * INFO * [69989] atomIncorp_evenness/mean:10,sigma:2/15/8 Finished with 0
2015-08-08 08:30:16,465 * INFO * [72675] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/4
2015-08-08 08:30:17,991 * INFO * [69907] atomIncorp_evenness/mean:10,sigma:2/15/9 Finished with 0
2015-08-08 08:30:17,993 * INFO * [72720] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/5
2015-08-08 08:30:18,233 * INFO * [69708] atomIncorp_evenness/mean:10,sigma:2/15/15 Finished with 0
2015-08-08 08:30:18,235 * INFO * [72743] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/0/6
2015-08-08 08:30:21,245 * INFO * [69946] atomIncorp_evenness/mean:10,sigma:2/15/17 Finished with 0
2015-08-08 08:30:21,247 * INFO * [72832] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/20
2015-08-08 08:30:22,164 * INFO * [70206] atomIncorp_evenness/mean:10,sigma:2/15/10 Finished with 0
2015-08-08 08:30:22,167 * INFO * [72841] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/14
2015-08-08 08:30:22,455 * INFO * [70008] atomIncorp_evenness/mean:10,sigma:2/15/3 Finished with 0
2015-08-08 08:30:22,458 * INFO * [72858] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/7
2015-08-08 08:30:23,607 * INFO * [70095] atomIncorp_evenness/mean:10,sigma:2/15/13 Finished with 0
2015-08-08 08:30:23,610 * INFO * [72921] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/19
2015-08-08 08:30:28,413 * INFO * [70426] atomIncorp_evenness/mean:10,sigma:2/15/4 Finished with 0
2015-08-08 08:30:28,415 * INFO * [73036] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/18
2015-08-08 08:30:28,851 * INFO * [70265] atomIncorp_evenness/mean:10,sigma:2/15/2 Finished with 0
2015-08-08 08:30:28,854 * INFO * [73051] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/15
2015-08-08 08:30:30,177 * INFO * [70491] atomIncorp_evenness/mean:10,sigma:2/15/5 Finished with 0
2015-08-08 08:30:30,180 * INFO * [73101] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/11
2015-08-08 08:30:32,681 * INFO * [70359] atomIncorp_evenness/mean:10,sigma:2/15/1 Finished with 0
2015-08-08 08:30:32,684 * INFO * [73207] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/16
2015-08-08 08:30:34,141 * INFO * [70286] atomIncorp_evenness/mean:10,sigma:2/15/12 Finished with 0
2015-08-08 08:30:34,144 * INFO * [73238] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/9
2015-08-08 08:30:38,116 * INFO * [70594] atomIncorp_evenness/mean:10,sigma:2/0/7 Finished with 0
2015-08-08 08:30:38,119 * INFO * [73315] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/17
2015-08-08 08:30:40,112 * INFO * [70510] atomIncorp_evenness/mean:10,sigma:2/15/6 Finished with 0
2015-08-08 08:30:40,114 * INFO * [73404] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/8
2015-08-08 08:30:40,829 * INFO * [70652] atomIncorp_evenness/mean:10,sigma:2/0/19 Finished with 0
2015-08-08 08:30:40,833 * INFO * [73427] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/3
2015-08-08 08:30:40,849 * INFO * [70566] atomIncorp_evenness/mean:10,sigma:2/0/14 Finished with 0
2015-08-08 08:30:40,853 * INFO * [73435] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/13
2015-08-08 08:30:43,681 * INFO * [70796] atomIncorp_evenness/mean:10,sigma:2/0/15 Finished with 0
2015-08-08 08:30:43,684 * INFO * [73523] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/10
2015-08-08 08:30:44,847 * INFO * [70525] atomIncorp_evenness/mean:10,sigma:2/0/20 Finished with 0
2015-08-08 08:30:44,849 * INFO * [73558] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/2
2015-08-08 08:30:46,533 * INFO * [70669] atomIncorp_evenness/mean:10,sigma:2/0/18 Finished with 0
2015-08-08 08:30:46,535 * INFO * [73617] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/12
2015-08-08 08:30:51,675 * INFO * [70836] atomIncorp_evenness/mean:10,sigma:2/0/11 Finished with 0
2015-08-08 08:30:51,678 * INFO * [73762] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/1
2015-08-08 08:30:55,878 * INFO * [71033] atomIncorp_evenness/mean:10,sigma:2/0/16 Finished with 0
2015-08-08 08:30:55,881 * INFO * [73887] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/4
2015-08-08 08:30:59,304 * INFO * [71074] atomIncorp_evenness/mean:10,sigma:2/0/9 Finished with 0
2015-08-08 08:30:59,307 * INFO * [74004] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/5
2015-08-08 08:31:00,999 * INFO * [71170] atomIncorp_evenness/mean:10,sigma:2/0/17 Finished with 0
2015-08-08 08:31:01,002 * INFO * [74055] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/100/6
2015-08-08 08:31:21,893 * INFO * [71834] atomIncorp_evenness/mean:10,sigma:2/0/8 Finished with 0
2015-08-08 08:31:21,897 * INFO * [74598] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/20
2015-08-08 08:31:27,766 * INFO * [71885] atomIncorp_evenness/mean:10,sigma:2/0/3 Finished with 0
2015-08-08 08:31:27,769 * INFO * [74751] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/14
2015-08-08 08:31:37,546 * INFO * [72281] atomIncorp_evenness/mean:10,sigma:2/0/10 Finished with 0
2015-08-08 08:31:37,549 * INFO * [75028] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/7
2015-08-08 08:31:37,988 * INFO * [72266] atomIncorp_evenness/mean:10,sigma:2/0/13 Finished with 0
2015-08-08 08:31:37,991 * INFO * [75037] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/19
2015-08-08 08:31:41,564 * INFO * [72582] atomIncorp_evenness/mean:10,sigma:2/0/12 Finished with 0
2015-08-08 08:31:41,566 * INFO * [75126] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/18
2015-08-08 08:31:50,580 * INFO * [72560] atomIncorp_evenness/mean:10,sigma:2/0/2 Finished with 0
2015-08-08 08:31:50,583 * INFO * [75373] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/15
2015-08-08 08:31:54,778 * INFO * [72743] atomIncorp_evenness/mean:10,sigma:2/0/6 Finished with 0
2015-08-08 08:31:54,781 * INFO * [75458] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/11
2015-08-08 08:31:55,685 * INFO * [72630] atomIncorp_evenness/mean:10,sigma:2/0/1 Finished with 0
2015-08-08 08:31:55,687 * INFO * [75507] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/16
2015-08-08 08:31:57,137 * INFO * [72675] atomIncorp_evenness/mean:10,sigma:2/0/4 Finished with 0
2015-08-08 08:31:57,139 * INFO * [75543] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/9
2015-08-08 08:31:57,443 * INFO * [72832] atomIncorp_evenness/mean:10,sigma:2/100/20 Finished with 0
2015-08-08 08:31:57,445 * INFO * [75563] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/17
2015-08-08 08:32:01,907 * INFO * [72720] atomIncorp_evenness/mean:10,sigma:2/0/5 Finished with 0
2015-08-08 08:32:01,911 * INFO * [75687] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/8
2015-08-08 08:32:02,513 * INFO * [73036] atomIncorp_evenness/mean:10,sigma:2/100/18 Finished with 0
2015-08-08 08:32:02,516 * INFO * [75699] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/3
2015-08-08 08:32:04,080 * INFO * [72841] atomIncorp_evenness/mean:10,sigma:2/100/14 Finished with 0
2015-08-08 08:32:04,082 * INFO * [75758] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/13
2015-08-08 08:32:04,140 * INFO * [72921] atomIncorp_evenness/mean:10,sigma:2/100/19 Finished with 0
2015-08-08 08:32:04,143 * INFO * [75767] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/10
2015-08-08 08:32:09,671 * INFO * [73207] atomIncorp_evenness/mean:10,sigma:2/100/16 Finished with 0
2015-08-08 08:32:09,673 * INFO * [75940] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/2
2015-08-08 08:32:12,032 * INFO * [72858] atomIncorp_evenness/mean:10,sigma:2/100/7 Finished with 0
2015-08-08 08:32:12,035 * INFO * [75999] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/12
2015-08-08 08:32:12,685 * INFO * [73238] atomIncorp_evenness/mean:10,sigma:2/100/9 Finished with 0
2015-08-08 08:32:12,688 * INFO * [76012] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/1
2015-08-08 08:32:13,074 * INFO * [73427] atomIncorp_evenness/mean:10,sigma:2/100/3 Finished with 0
2015-08-08 08:32:13,077 * INFO * [76027] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/4
2015-08-08 08:32:13,267 * INFO * [73051] atomIncorp_evenness/mean:10,sigma:2/100/15 Finished with 0
2015-08-08 08:32:13,270 * INFO * [76036] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/5
2015-08-08 08:32:16,480 * INFO * [73523] atomIncorp_evenness/mean:10,sigma:2/100/10 Finished with 0
2015-08-08 08:32:16,482 * INFO * [76127] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/10/6
2015-08-08 08:32:18,069 * INFO * [73315] atomIncorp_evenness/mean:10,sigma:2/100/17 Finished with 0
2015-08-08 08:32:18,072 * INFO * [76154] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/20
2015-08-08 08:32:18,417 * INFO * [73101] atomIncorp_evenness/mean:10,sigma:2/100/11 Finished with 0
2015-08-08 08:32:18,420 * INFO * [76177] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/14
2015-08-08 08:32:20,028 * INFO * [73558] atomIncorp_evenness/mean:10,sigma:2/100/2 Finished with 0
2015-08-08 08:32:20,031 * INFO * [76245] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/7
2015-08-08 08:32:22,537 * INFO * [73617] atomIncorp_evenness/mean:10,sigma:2/100/12 Finished with 0
2015-08-08 08:32:22,541 * INFO * [76309] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/19
2015-08-08 08:32:26,686 * INFO * [73435] atomIncorp_evenness/mean:10,sigma:2/100/13 Finished with 0
2015-08-08 08:32:26,689 * INFO * [76487] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/18
2015-08-08 08:32:27,288 * INFO * [73404] atomIncorp_evenness/mean:10,sigma:2/100/8 Finished with 0
2015-08-08 08:32:27,291 * INFO * [76524] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/15
2015-08-08 08:32:32,335 * INFO * [73887] atomIncorp_evenness/mean:10,sigma:2/100/4 Finished with 0
2015-08-08 08:32:32,337 * INFO * [76611] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/11
2015-08-08 08:32:38,841 * INFO * [73762] atomIncorp_evenness/mean:10,sigma:2/100/1 Finished with 0
2015-08-08 08:32:38,843 * INFO * [76808] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/16
2015-08-08 08:32:39,398 * INFO * [74055] atomIncorp_evenness/mean:10,sigma:2/100/6 Finished with 0
2015-08-08 08:32:39,401 * INFO * [76825] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/9
2015-08-08 08:32:40,852 * INFO * [74004] atomIncorp_evenness/mean:10,sigma:2/100/5 Finished with 0
2015-08-08 08:32:40,855 * INFO * [76882] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/17
2015-08-08 08:32:55,165 * INFO * [74598] atomIncorp_evenness/mean:10,sigma:2/10/20 Finished with 0
2015-08-08 08:32:55,167 * INFO * [77255] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/8
2015-08-08 08:33:12,585 * INFO * [75028] atomIncorp_evenness/mean:10,sigma:2/10/7 Finished with 0
2015-08-08 08:33:12,588 * INFO * [77729] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/3
2015-08-08 08:33:15,605 * INFO * [74751] atomIncorp_evenness/mean:10,sigma:2/10/14 Finished with 0
2015-08-08 08:33:15,608 * INFO * [77817] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/13
2015-08-08 08:33:17,550 * INFO * [75126] atomIncorp_evenness/mean:10,sigma:2/10/18 Finished with 0
2015-08-08 08:33:17,552 * INFO * [77860] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/10
2015-08-08 08:33:18,704 * INFO * [75037] atomIncorp_evenness/mean:10,sigma:2/10/19 Finished with 0
2015-08-08 08:33:18,706 * INFO * [77903] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/2
2015-08-08 08:33:29,616 * INFO * [75507] atomIncorp_evenness/mean:10,sigma:2/10/16 Finished with 0
2015-08-08 08:33:29,618 * INFO * [78210] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/12
2015-08-08 08:33:31,021 * INFO * [75543] atomIncorp_evenness/mean:10,sigma:2/10/9 Finished with 0
2015-08-08 08:33:31,023 * INFO * [78245] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/1
2015-08-08 08:33:31,990 * INFO * [75373] atomIncorp_evenness/mean:10,sigma:2/10/15 Finished with 0
2015-08-08 08:33:31,993 * INFO * [78286] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/4
2015-08-08 08:33:36,498 * INFO * [75699] atomIncorp_evenness/mean:10,sigma:2/10/3 Finished with 0
2015-08-08 08:33:36,500 * INFO * [78373] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/5
2015-08-08 08:33:37,211 * INFO * [75563] atomIncorp_evenness/mean:10,sigma:2/10/17 Finished with 0
2015-08-08 08:33:37,214 * INFO * [78390] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/5/6
2015-08-08 08:33:37,260 * INFO * [75687] atomIncorp_evenness/mean:10,sigma:2/10/8 Finished with 0
2015-08-08 08:33:37,263 * INFO * [78397] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/20
2015-08-08 08:33:40,320 * INFO * [75458] atomIncorp_evenness/mean:10,sigma:2/10/11 Finished with 0
2015-08-08 08:33:40,323 * INFO * [78499] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/14
2015-08-08 08:33:43,587 * INFO * [75767] atomIncorp_evenness/mean:10,sigma:2/10/10 Finished with 0
2015-08-08 08:33:43,589 * INFO * [78627] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/7
2015-08-08 08:33:44,787 * INFO * [75758] atomIncorp_evenness/mean:10,sigma:2/10/13 Finished with 0
2015-08-08 08:33:44,790 * INFO * [78646] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/19
2015-08-08 08:33:48,297 * INFO * [76012] atomIncorp_evenness/mean:10,sigma:2/10/1 Finished with 0
2015-08-08 08:33:48,299 * INFO * [78751] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/18
2015-08-08 08:33:52,632 * INFO * [76154] atomIncorp_evenness/mean:10,sigma:2/5/20 Finished with 0
2015-08-08 08:33:52,635 * INFO * [78828] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/15
2015-08-08 08:33:54,981 * INFO * [76127] atomIncorp_evenness/mean:10,sigma:2/10/6 Finished with 0
2015-08-08 08:33:54,985 * INFO * [78927] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/11
2015-08-08 08:33:55,072 * INFO * [76036] atomIncorp_evenness/mean:10,sigma:2/10/5 Finished with 0
2015-08-08 08:33:55,075 * INFO * [78936] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/16
2015-08-08 08:33:55,157 * INFO * [76027] atomIncorp_evenness/mean:10,sigma:2/10/4 Finished with 0
2015-08-08 08:33:55,159 * INFO * [78951] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/9
2015-08-08 08:33:56,810 * INFO * [75999] atomIncorp_evenness/mean:10,sigma:2/10/12 Finished with 0
2015-08-08 08:33:56,812 * INFO * [78994] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/17
2015-08-08 08:33:57,440 * INFO * [75940] atomIncorp_evenness/mean:10,sigma:2/10/2 Finished with 0
2015-08-08 08:33:57,443 * INFO * [79005] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/8
2015-08-08 08:33:57,654 * INFO * [76177] atomIncorp_evenness/mean:10,sigma:2/5/14 Finished with 0
2015-08-08 08:33:57,656 * INFO * [79014] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/3
2015-08-08 08:34:02,542 * INFO * [76309] atomIncorp_evenness/mean:10,sigma:2/5/19 Finished with 0
2015-08-08 08:34:02,544 * INFO * [79180] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/13
2015-08-08 08:34:03,344 * INFO * [76245] atomIncorp_evenness/mean:10,sigma:2/5/7 Finished with 0
2015-08-08 08:34:03,347 * INFO * [79207] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/10
2015-08-08 08:34:05,321 * INFO * [76487] atomIncorp_evenness/mean:10,sigma:2/5/18 Finished with 0
2015-08-08 08:34:05,324 * INFO * [79270] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/2
2015-08-08 08:34:07,974 * INFO * [76611] atomIncorp_evenness/mean:10,sigma:2/5/11 Finished with 0
2015-08-08 08:34:07,976 * INFO * [79351] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/12
2015-08-08 08:34:09,343 * INFO * [76524] atomIncorp_evenness/mean:10,sigma:2/5/15 Finished with 0
2015-08-08 08:34:09,346 * INFO * [79388] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/1
2015-08-08 08:34:12,108 * INFO * [76808] atomIncorp_evenness/mean:10,sigma:2/5/16 Finished with 0
2015-08-08 08:34:12,111 * INFO * [79493] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/4
2015-08-08 08:34:19,874 * INFO * [76882] atomIncorp_evenness/mean:10,sigma:2/5/17 Finished with 0
2015-08-08 08:34:19,877 * INFO * [79712] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/5
2015-08-08 08:34:20,056 * INFO * [76825] atomIncorp_evenness/mean:10,sigma:2/5/9 Finished with 0
2015-08-08 08:34:20,058 * INFO * [79731] Started ./SIPSimRun.sh in atomIncorp_evenness/mean:10,sigma:2/40/6
2015-08-08 08:34:34,601 * INFO * [77255] atomIncorp_evenness/mean:10,sigma:2/5/8 Finished with 0
2015-08-08 08:34:48,935 * INFO * [77729] atomIncorp_evenness/mean:10,sigma:2/5/3 Finished with 0
2015-08-08 08:34:49,971 * INFO * [77817] atomIncorp_evenness/mean:10,sigma:2/5/13 Finished with 0
2015-08-08 08:34:50,815 * INFO * [77860] atomIncorp_evenness/mean:10,sigma:2/5/10 Finished with 0
2015-08-08 08:34:51,214 * INFO * [77903] atomIncorp_evenness/mean:10,sigma:2/5/2 Finished with 0
2015-08-08 08:35:03,407 * INFO * [78286] atomIncorp_evenness/mean:10,sigma:2/5/4 Finished with 0
2015-08-08 08:35:08,752 * INFO * [78210] atomIncorp_evenness/mean:10,sigma:2/5/12 Finished with 0
2015-08-08 08:35:10,364 * INFO * [78245] atomIncorp_evenness/mean:10,sigma:2/5/1 Finished with 0
2015-08-08 08:35:13,329 * INFO * [78397] atomIncorp_evenness/mean:10,sigma:2/40/20 Finished with 0
2015-08-08 08:35:14,961 * INFO * [78390] atomIncorp_evenness/mean:10,sigma:2/5/6 Finished with 0
2015-08-08 08:35:16,417 * INFO * [78373] atomIncorp_evenness/mean:10,sigma:2/5/5 Finished with 0
2015-08-08 08:35:18,519 * INFO * [78627] atomIncorp_evenness/mean:10,sigma:2/40/7 Finished with 0
2015-08-08 08:35:18,660 * INFO * [78499] atomIncorp_evenness/mean:10,sigma:2/40/14 Finished with 0
2015-08-08 08:35:22,648 * INFO * [78646] atomIncorp_evenness/mean:10,sigma:2/40/19 Finished with 0
2015-08-08 08:35:23,179 * INFO * [78828] atomIncorp_evenness/mean:10,sigma:2/40/15 Finished with 0
2015-08-08 08:35:23,240 * INFO * [78751] atomIncorp_evenness/mean:10,sigma:2/40/18 Finished with 0
2015-08-08 08:35:25,101 * INFO * [78927] atomIncorp_evenness/mean:10,sigma:2/40/11 Finished with 0
2015-08-08 08:35:26,057 * INFO * [79005] atomIncorp_evenness/mean:10,sigma:2/40/8 Finished with 0
2015-08-08 08:35:26,719 * INFO * [78936] atomIncorp_evenness/mean:10,sigma:2/40/16 Finished with 0
2015-08-08 08:35:28,584 * INFO * [79180] atomIncorp_evenness/mean:10,sigma:2/40/13 Finished with 0
2015-08-08 08:35:29,092 * INFO * [78994] atomIncorp_evenness/mean:10,sigma:2/40/17 Finished with 0
2015-08-08 08:35:30,282 * INFO * [79014] atomIncorp_evenness/mean:10,sigma:2/40/3 Finished with 0
2015-08-08 08:35:30,519 * INFO * [78951] atomIncorp_evenness/mean:10,sigma:2/40/9 Finished with 0
2015-08-08 08:35:33,178 * INFO * [79270] atomIncorp_evenness/mean:10,sigma:2/40/2 Finished with 0
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2015-08-08 08:35:35,073 * INFO * [79207] atomIncorp_evenness/mean:10,sigma:2/40/10 Finished with 0
2015-08-08 08:35:38,217 * INFO * [79388] atomIncorp_evenness/mean:10,sigma:2/40/1 Finished with 0
2015-08-08 08:35:39,494 * INFO * [79731] atomIncorp_evenness/mean:10,sigma:2/40/6 Finished with 0
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2015-08-08 08:35:41,631 * INFO * [79712] atomIncorp_evenness/mean:10,sigma:2/40/5 Finished with 0

In [ ]:

    

# aggregating confusion matrix data
## table
!cd $workDir; \
    nestagg delim \
        -d atomIncorp_evenness \
        -k abund_dist_p,percIncorp,rep \
        -o ./atomIncorp_evenness/DESeq2-cMtx_table.csv \
        DESeq2-cMtx_table.csv

## overall
!cd $workDir; \
    nestagg delim \
        -d atomIncorp_evenness \
        -k abund_dist_p,percIncorp,rep \
        -o ./atomIncorp_evenness/DESeq2-cMtx_overall.csv \
        DESeq2-cMtx_overall.csv
    
## byClass
!cd $workDir; \
    nestagg delim \
        -d atomIncorp_evenness \
        -k abund_dist_p,percIncorp,rep \
        -o ./atomIncorp_evenness/DESeq2-cMtx_byClass.csv \
        DESeq2-cMtx_byClass.csv


    

In [32]:

    

%%R -i workDir
setwd(workDir)

byClass = read.csv('./atomIncorp_evenness/DESeq2-cMtx_byClass.csv')
#byClass$byClass[is.na(byClass$byClass)] = 0
byClass %>% head


    

    






               X     byClass    abund_dist_p percIncorp rep
1    Sensitivity 0.043478261 mean:10,sigma:3         20  20
2    Specificity 1.000000000 mean:10,sigma:3         20  20
3 Pos Pred Value 1.000000000 mean:10,sigma:3         20  20
4 Neg Pred Value 0.892682927 mean:10,sigma:3         20  20
5     Prevalence 0.111650485 mean:10,sigma:3         20  20
6 Detection Rate 0.004854369 mean:10,sigma:3         20  20

In [45]:

    

%%R -w 700
to.keep = c('Sensitivity', 'Specificity', 'Balanced Accuracy')

byClass.f = byClass %>%
    filter(X %in% to.keep) %>%
    mutate(percIncorp = as.character(percIncorp))

byClass.f$percIncorp = factor(byClass.f$percIncorp, levels=sort(unique(as.numeric(byClass.f$percIncorp))))

ggplot(byClass.f, aes(percIncorp, byClass, fill=abund_dist_p)) +
    geom_boxplot() +
    labs(y='Value', x='Atom percent 13C') +
    facet_grid(X ~ .) +
        theme(
        text = element_text(size=16)
        )


    

In [60]:

    

%%R -w 700 -h 400

byClass.f.s = byClass.f %>%
    group_by(X, abund_dist_p, percIncorp) %>%
    summarize(mean.val = mean(byClass),
              sd.val = sd(byClass)) %>%
    ungroup() %>%
    mutate(percIncorp = as.numeric(as.character(percIncorp)))

#byClass.f.s %>% head

ggplot(byClass.f.s, aes(percIncorp, mean.val, group=abund_dist_p, fill=abund_dist_p)) +
    geom_smooth(method='loess') +
    labs(y='Value', x='Atom percent 13C') +
    facet_grid(X ~ .) +
        theme(
        text = element_text(size=16)
        )


    

In [72]:

    

%%R -w 800 -h 450

byClass.f.s = byClass.f %>%
    group_by(X, abund_dist_p, percIncorp) %>%
    summarize(mean.val = mean(byClass),
              sd.val = sd(byClass)) %>%
    ungroup() %>%
    mutate(percIncorp = as.numeric(as.character(percIncorp)))


ggplot(byClass.f.s, aes(percIncorp, mean.val, group=abund_dist_p, color=abund_dist_p,
                       ymin=mean.val - sd.val, ymax=mean.val + sd.val)) +
    geom_pointrange(alpha=0.6, size=0.7) +
    geom_line() +
    labs(y='Value', x='Atom percent 13C') +
    theme_bw() +
    facet_grid(X ~ .) +
        theme(
        text = element_text(size=16)
        )