Claim 9: Count the total number of vesicles in Cylinder 1 of Kasthuri

The paper agrees with the result in the paper (n = 162,259)



In [10]:

    
import ndio.remote.neurodata as neurodata
import ndio.ramon as ramon
nd = neurodata()

token = "kasthuri2015_ramon_v4"
channel = "vesicles"

# Here we do a filter query on RAMONOrganelles in channel vesicle
# This is sufficient to uniquely identify vesicles in this case

ids = nd.get_ramon_ids(token, channel)#, ramon_type=ramon.RAMONOrganelle)



In [11]:

    
print 'The total number of vesicles manually annotated in cylinder 1 is: ' + str(len(ids))









    



The total number of vesicles manually annotated in cylinder 1 is: 161368



In [12]:

    
import ndio
ndio.version









    Out[12]:





'1.0.0'