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%matplotlib inline
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# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
#
# License: BSD (3-clause)
import matplotlib.pyplot as plt
import mne
from mne import io
from mne.datasets import sample
from mne.minimum_norm import read_inverse_operator, source_band_induced_power
print(__doc__)
Set parameters
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data_path = sample.data_path()
raw_fname = data_path + '/MEG/sample/sample_audvis_raw.fif'
fname_inv = data_path + '/MEG/sample/sample_audvis-meg-oct-6-meg-inv.fif'
tmin, tmax, event_id = -0.2, 0.5, 1
# Setup for reading the raw data
raw = io.read_raw_fif(raw_fname)
events = mne.find_events(raw, stim_channel='STI 014')
inverse_operator = read_inverse_operator(fname_inv)
include = []
raw.info['bads'] += ['MEG 2443', 'EEG 053'] # bads + 2 more
# picks MEG gradiometers
picks = mne.pick_types(raw.info, meg=True, eeg=False, eog=True,
stim=False, include=include, exclude='bads')
# Load condition 1
event_id = 1
events = events[:10] # take 10 events to keep the computation time low
# Use linear detrend to reduce any edge artifacts
epochs = mne.Epochs(raw, events, event_id, tmin, tmax, picks=picks,
baseline=(None, 0), reject=dict(grad=4000e-13, eog=150e-6),
preload=True, detrend=1)
# Compute a source estimate per frequency band
bands = dict(alpha=[9, 11], beta=[18, 22])
stcs = source_band_induced_power(epochs, inverse_operator, bands, n_cycles=2,
use_fft=False, n_jobs=1)
for b, stc in stcs.iteritems():
stc.save('induced_power_%s' % b)
plot mean power
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plt.plot(stcs['alpha'].times, stcs['alpha'].data.mean(axis=0), label='Alpha')
plt.plot(stcs['beta'].times, stcs['beta'].data.mean(axis=0), label='Beta')
plt.xlabel('Time (ms)')
plt.ylabel('Power')
plt.legend()
plt.title('Mean source induced power')
plt.show()