In [32]:
import nglview
import rna_pdb_tools.Seq as Seq
import rna_pdb_tools.BlastPDB
from rna_pdb_tools.BlastPDB import BlastPDB
reload(rna_pdb_tools.BlastPDB);
reload(Seq);
In [49]:
seq = Seq.Seq("GGGGCGCGGCGCUCAUUCCUGCGCAAGCAGGGCAAGGCCCAGUCCCGUGCAAGCCGGGACCGCCCC")
In [50]:
seq
Out[50]:
GGGGCGCGGCGCUCAUUCCUGCGCAAGCAGGGCAAGGCCCAGUCCCGUGCAAGCCGGGACCGCCCC
In [51]:
print seq.predict_ss()
((((((.((.(((...((((((....))))))...))))).((((((.......))))))))))))
In [52]:
print seq.predict_ss(method='RNAsubopt')
GGGGCGCGGCGCUCAUUCCUGCGCAAGCAGGGCAAGGCCCAGUCCCGUGCAAGCCGGGACCGCCCC -3490 100
(((((((.((((........))))..)).((((...)))).((((((.......)))))).))))) -34.40
(((((((.((((........))))..)).((((...)))).((((((.(....))))))).))))) -34.40
((((((.((.(((...((((((....))))))...))))).(((((((....)).))))))))))) -33.90
((((((.((.(((...((((((....))))))...))))).((((((.......)))))))))))) -34.90
((((((.((.(((...((((((....))))))...))))).((((((.(....))))))))))))) -34.90
((((((.((.(((...((((((....))))))...))))).(((((((....).)))))))))))) -33.90
((((((.(((.((...((((((....))))))..)))))..((((((.......)))))))))))) -33.90
((((((.(((.((...((((((....))))))..)))))..((((((.(....))))))))))))) -33.90
In [53]:
print seq.predict_ss(method='ipknot')
((((((.((.(((...((((((....))))))...))))).((((((.......))))))))))))
In [54]:
print seq.predict_ss(method='centroid_fold')
((((((.((.(((...((((((....))))))...))))).((((((.......)))))))))))) (g=1,th=0.5,e=-27.53)
In [55]:
print seq.predict_ss(method='contextfold')
((((((....(((...((((((....))))))...)))...((((((.......))))))))))))
In [48]:
import rna_pdb_tools.RfamSearch as rf
#reload(rf)
#seq = Seq.Seq("GGGUCAGGCCGGCGAAAGUCGCCACAGUUUGGGGAAAGCUGUGCAGCCUGUAACCCCCCCACGAAAGUGGG")
rs = rf.RfamSearch()
print rs.cmscan(seq)
GCAGGGCAAGGCCCAGUCCCGUGCAAGCCGGGACCGCCCCGCAAGGGGCGCGGCGCUCAUUCCUGC
# cmscan :: search sequence(s) against a CM database
# INFERNAL 1.1.2 (July 2016)
# Copyright (C) 2016 Howard Hughes Medical Institute.
# Freely distributed under a BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: /tmp/ss.fa
# target CM database: Rfam.cm
# sequence reporting threshold: E-value <= 1
# number of worker threads: 4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: test [L=65]
Hit scores:
rank E-value score bias modelname start end mdl trunc gc description
---- --------- ------ ----- --------- ------ ------ --- ----- ---- -----------
[No hits detected that satisfy reporting thresholds]
Hit alignments:
[No hits detected that satisfy reporting thresholds]
Internal HMM-only pipeline statistics summary: (run for model(s) with zero basepairs)
--------------------------------------------------------------------------------------
Query sequence(s): 1 (130 residues searched)
Target model(s): 347 (40911 consensus positions)
Windows passing local HMM SSV filter: 5 (0.007205); expected (0.02)
Windows passing local HMM MSV bias filter: 3 (0.004323); expected (0.02)
Windows passing local HMM Viterbi filter: 0 (0); expected (0.001)
Windows passing local HMM Forward filter: 0 (0); expected (1e-05)
Total HMM hits reported: 0 (0)
Internal CM pipeline statistics summary:
----------------------------------------
Query sequence(s): 1 (130 residues searched)
Query sequences re-searched for truncated hits: 1 (378.5 residues re-searched, avg per model)
Target model(s): 2126 (267652 consensus positions)
Windows passing local HMM SSV filter: 1136 (0.06392); expected (0.35)
Windows passing local HMM Viterbi filter: (off)
Windows passing local HMM Viterbi bias filter: (off)
Windows passing local HMM Forward filter: 570 (0.0328); expected (0.02)
Windows passing local HMM Forward bias filter: 451 (0.02601); expected (0.02)
Windows passing glocal HMM Forward filter: 138 (0.008112); expected (0.02)
Windows passing glocal HMM Forward bias filter: 122 (0.00715); expected (0.02)
Envelopes passing glocal HMM envelope defn filter: 118 (0.006324); expected (0.02)
Envelopes passing local CM CYK filter: 17 (0.0006004); expected (0.0001)
Total CM hits reported: 0 (0); includes 0 truncated hit(s)
Total CM and HMM hits reported: 0
# CPU time: 4.46u 0.47s 00:00:04.93 Elapsed: 00:00:02.36
//
[ok]
In [31]:
p = BlastPDB(seq.seq)
p.search()
print p.result
<HTML>
<TITLE>BLAST Search Results</TITLE>
<BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099">
<PRE>
<b>BLASTN 2.2.18 [Mar-02-2008]</b>
<b><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids
=9254694&dopt=Citation">Reference</a>:</b>
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
<b>Query=</b> UNKNOWN_SEQUENCE
(65 letters)
<b>Database:</b> pdb_nucleotide
15,787 sequences; 2,694,141 total letters
Searching..................................................done
<PRE>
Score E
Sequences producing significant alignments: (bits) Value
5J8B:1:A|pdbid|entity|chain(s)|sequence <a href = #15237> 24</a> 6.2
5J4D:2:B,GB|pdbid|entity|chain(s)|sequence <a href = #15214> 24</a> 6.2
5J4C:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #15209> 24</a> 6.2
5J4B:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #15203> 24</a> 6.2
5J3C:1:RA,YA|pdbid|entity|chain(s)|sequence <a href = #15194> 24</a> 6.2
5J30:1:RA,YA|pdbid|entity|chain(s)|sequence <a href = #15188> 24</a> 6.2
5IMR:23:D|pdbid|entity|chain(s)|sequence <a href = #15032> 24</a> 6.2
5IMQ:7:D|pdbid|entity|chain(s)|sequence <a href = #15027> 24</a> 6.2
5IBB:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14998> 24</a> 6.2
5IB8:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14990> 24</a> 6.2
5IB7:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14982> 24</a> 6.2
5HD1:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14918> 24</a> 6.2
5HCR:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14913> 24</a> 6.2
5HCQ:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14908> 24</a> 6.2
5HCP:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14903> 24</a> 6.2
5HAU:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14893> 24</a> 6.2
5FDV:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14725> 24</a> 6.2
5FDU:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14722> 24</a> 6.2
5F8K:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14694> 24</a> 6.2
5EL7:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14626> 24</a> 6.2
5EL6:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14618> 24</a> 6.2
5EL5:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14611> 24</a> 6.2
5EL4:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14602> 24</a> 6.2
5E81:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14551> 24</a> 6.2
5E7K:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #14544> 24</a> 6.2
5DOY:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14459> 24</a> 6.2
5DOX:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #14453> 24</a> 6.2
5DFE:4:RA,YA|pdbid|entity|chain(s)|sequence <a href = #14394> 24</a> 6.2
5D8B:51:VC,ZC|pdbid|entity|chain(s)|sequence <a href = #14324> 24</a> 6.2
5CZP:1:RA,YA|pdbid|entity|chain(s)|sequence <a href = #14282> 24</a> 6.2
5AA0:1:AA|pdbid|entity|chain(s)|sequence <a href = #13948> 24</a> 6.2
5A9Z:1:AA|pdbid|entity|chain(s)|sequence <a href = #13943> 24</a> 6.2
4ZSN:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #13896> 24</a> 6.2
4ZER:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #13867> 24</a> 6.2
4Z8C:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #13854> 24</a> 6.2
4Z3S:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #13796> 24</a> 6.2
4YZV:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #13770> 24</a> 6.2
4YPB:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #13742> 24</a> 6.2
4Y4P:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #13629> 24</a> 6.2
4Y4O:1:1A,2A|pdbid|entity|chain(s)|sequence <a href = #13623> 24</a> 6.2
4XEJ:51:A23S,B23S|pdbid|entity|chain(s)|sequence <a href = #13532> 24</a> 6.2
4WZO:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #13449> 24</a> 6.2
4WZD:24:14,1H|pdbid|entity|chain(s)|sequence <a href = #13435> 24</a> 6.2
4WU1:24:14,1H|pdbid|entity|chain(s)|sequence <a href = #13411> 24</a> 6.2
4WT1:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #13382> 24</a> 6.2
4WSM:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #13375> 24</a> 6.2
4WSD:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #13368> 24</a> 6.2
4WRO:5:14,1H|pdbid|entity|chain(s)|sequence <a href = #13352> 24</a> 6.2
4WRA:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #13346> 24</a> 6.2
4WR6:25:14,1H|pdbid|entity|chain(s)|sequence <a href = #13338> 24</a> 6.2
4WQY:1:AA,CA|pdbid|entity|chain(s)|sequence <a href = #13327> 24</a> 6.2
4WQU:1:AA,CA|pdbid|entity|chain(s)|sequence <a href = #13322> 24</a> 6.2
4WQR:26:14,1H|pdbid|entity|chain(s)|sequence <a href = #13315> 24</a> 6.2
4WQF:1:AA,CA|pdbid|entity|chain(s)|sequence <a href = #13307> 24</a> 6.2
4WQ1:25:14,1H|pdbid|entity|chain(s)|sequence <a href = #13303> 24</a> 6.2
4WPO:1:AA,CA|pdbid|entity|chain(s)|sequence <a href = #13295> 24</a> 6.2
4W4G:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #13225> 24</a> 6.2
4W2I:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13220> 24</a> 6.2
4W2H:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13214> 24</a> 6.2
4W2G:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13208> 24</a> 6.2
4W2F:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13202> 24</a> 6.2
4W2E:1:A|pdbid|entity|chain(s)|sequence <a href = #13194> 24</a> 6.2
4W29:59:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13187> 24</a> 6.2
4V9S:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13184> 24</a> 6.2
4V9R:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13179> 24</a> 6.2
4V9Q:1:AA,CA|pdbid|entity|chain(s)|sequence <a href = #13173> 24</a> 6.2
4V9N:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13163> 24</a> 6.2
4V9M:58:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13156> 24</a> 6.2
4V9L:59:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13151> 24</a> 6.2
4V9K:59:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13146> 24</a> 6.2
4V9J:60:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13140> 24</a> 6.2
4V9I:26:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13138> 24</a> 6.2
4V9H:25:BA|pdbid|entity|chain(s)|sequence <a href = #13130> 24</a> 6.2
4V9B:24:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13108> 24</a> 6.2
4V9A:24:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13103> 24</a> 6.2
4V97:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13100> 24</a> 6.2
4V95:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13094> 24</a> 6.2
4V90:35:BA|pdbid|entity|chain(s)|sequence <a href = #13084> 24</a> 6.2
4V8X:36:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13067> 24</a> 6.2
4V8U:36:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13060> 24</a> 6.2
4V8Q:11:AA|pdbid|entity|chain(s)|sequence <a href = #13047> 24</a> 6.2
4V8O:35:BA|pdbid|entity|chain(s)|sequence <a href = #13039> 24</a> 6.2
4V8N:35:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13034> 24</a> 6.2
4V8J:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13018> 24</a> 6.2
4V8I:23:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13012> 24</a> 6.2
4V8H:23:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13009> 24</a> 6.2
4V8G:23:BA,DA|pdbid|entity|chain(s)|sequence <a href = #13006> 24</a> 6.2
4V8F:1:AA,DA|pdbid|entity|chain(s)|sequence <a href = #13002> 24</a> 6.2
4V8E:1:AA,CA|pdbid|entity|chain(s)|sequence <a href = #12996> 24</a> 6.2
4V8D:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12991> 24</a> 6.2
4V8C:1:AA,BA|pdbid|entity|chain(s)|sequence <a href = #12984> 24</a> 6.2
4V8B:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12979> 24</a> 6.2
4V8A:1:AA,BA|pdbid|entity|chain(s)|sequence <a href = #12972> 24</a> 6.2
4V87:1:AA,DA|pdbid|entity|chain(s)|sequence <a href = #12960> 24</a> 6.2
4V84:23:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12950> 24</a> 6.2
4V83:23:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12946> 24</a> 6.2
4V7P:25:BA,CA|pdbid|entity|chain(s)|sequence <a href = #12908> 24</a> 6.2
4V7M:27:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12902> 24</a> 6.2
4V7L:27:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12894> 24</a> 6.2
4V7K:57:AA,BA|pdbid|entity|chain(s)|sequence <a href = #12884> 24</a> 6.2
4V7J:57:AA,BA|pdbid|entity|chain(s)|sequence <a href = #12878> 24</a> 6.2
4V6G:24:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12680> 24</a> 6.2
4V6F:1:AA|pdbid|entity|chain(s)|sequence <a href = #12677> 24</a> 6.2
4V6F:55:DA|pdbid|entity|chain(s)|sequence <a href = #12673> 24</a> 6.2
4V6A:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12652> 24</a> 6.2
4V67:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12632> 24</a> 6.2
4V63:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12614> 24</a> 6.2
4V5S:36:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12402> 24</a> 6.2
4V5R:36:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12396> 24</a> 6.2
4V5Q:36:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12390> 24</a> 6.2
4V5P:36:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12384> 24</a> 6.2
4V5N:35:BA|pdbid|entity|chain(s)|sequence <a href = #12377> 24</a> 6.2
4V5M:35:BA|pdbid|entity|chain(s)|sequence <a href = #12372> 24</a> 6.2
4V5L:36:BA|pdbid|entity|chain(s)|sequence <a href = #12367> 24</a> 6.2
4V5K:35:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12361> 24</a> 6.2
4V5J:35:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12355> 24</a> 6.2
4V5G:36:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12345> 24</a> 6.2
4V5F:35:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12339> 24</a> 6.2
4V5E:35:BA,DA|pdbid|entity|chain(s)|sequence <a href = #12334> 24</a> 6.2
4V4Z:25:BA|pdbid|entity|chain(s)|sequence <a href = #12278> 24</a> 6.2
4V4Y:24:BA|pdbid|entity|chain(s)|sequence <a href = #12269> 24</a> 6.2
4V4X:24:BA|pdbid|entity|chain(s)|sequence <a href = #12264> 24</a> 6.2
4V4T:26:BA|pdbid|entity|chain(s)|sequence <a href = #12255> 24</a> 6.2
4V4S:27:BA|pdbid|entity|chain(s)|sequence <a href = #12249> 24</a> 6.2
4V4R:27:BA|pdbid|entity|chain(s)|sequence <a href = #12243> 24</a> 6.2
4V4P:2:AA|pdbid|entity|chain(s)|sequence <a href = #12231> 24</a> 6.2
4V4J:1:w|pdbid|entity|chain(s)|sequence <a href = #12220> 24</a> 6.2
4V4I:1:w|pdbid|entity|chain(s)|sequence <a href = #12214> 24</a> 6.2
4V42:25:BA|pdbid|entity|chain(s)|sequence <a href = #12184> 24</a> 6.2
4TUE:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #11881> 24</a> 6.2
4TUD:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #11874> 24</a> 6.2
4TUC:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #11867> 24</a> 6.2
4TUB:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #11860> 24</a> 6.2
4TUA:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #11853> 24</a> 6.2
4P70:22:RA,YA|pdbid|entity|chain(s)|sequence <a href = #11364> 24</a> 6.2
4P6F:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #11357> 24</a> 6.2
4LT8:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #10916> 24</a> 6.2
4LSK:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #10907> 24</a> 6.2
4LNT:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #10893> 24</a> 6.2
4LFZ:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #10873> 24</a> 6.2
4LEL:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #10855> 24</a> 6.2
4L71:22:RA,YA|pdbid|entity|chain(s)|sequence <a href = #10834> 24</a> 6.2
4L47:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #10822> 24</a> 6.2
1VY7:26:BA,DA|pdbid|entity|chain(s)|sequence <a href = #3079> 24</a> 6.2
1VY6:25:BA,DA|pdbid|entity|chain(s)|sequence <a href = #3072> 24</a> 6.2
1VY5:26:BA,DA|pdbid|entity|chain(s)|sequence <a href = #3066> 24</a> 6.2
1VY4:26:BA,DA|pdbid|entity|chain(s)|sequence <a href = #3059> 24</a> 6.2
1VVJ:25:RA,YA|pdbid|entity|chain(s)|sequence <a href = #3052> 24</a> 6.2
1ML5:4:a|pdbid|entity|chain(s)|sequence <a href = #1790> 24</a> 6.2
</PRE>
<PRE>
><a name = 15237></a>5J8B:1:A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 15214></a>5J4D:2:B,GB|pdbid|entity|chain(s)|sequence
Length = 2880
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 561 gccccgcaaggg 572
</PRE>
<PRE>
><a name = 15209></a>5J4C:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 15203></a>5J4B:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 15194></a>5J3C:1:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 15188></a>5J30:1:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 15032></a>5IMR:23:D|pdbid|entity|chain(s)|sequence
Length = 2893
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 15027></a>5IMQ:7:D|pdbid|entity|chain(s)|sequence
Length = 2893
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 14998></a>5IBB:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14990></a>5IB8:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14982></a>5IB7:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14918></a>5HD1:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14913></a>5HCR:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14908></a>5HCQ:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14903></a>5HCP:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14893></a>5HAU:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14725></a>5FDV:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14722></a>5FDU:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14694></a>5F8K:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14626></a>5EL7:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14618></a>5EL6:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14611></a>5EL5:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14602></a>5EL4:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14551></a>5E81:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14544></a>5E7K:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 14459></a>5DOY:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14453></a>5DOX:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14394></a>5DFE:4:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 14324></a>5D8B:51:VC,ZC|pdbid|entity|chain(s)|sequence
Length = 2893
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 14282></a>5CZP:1:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13948></a>5AA0:1:AA|pdbid|entity|chain(s)|sequence
Length = 2889
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13943></a>5A9Z:1:AA|pdbid|entity|chain(s)|sequence
Length = 2889
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13896></a>4ZSN:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13867></a>4ZER:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13854></a>4Z8C:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13796></a>4Z3S:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13770></a>4YZV:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13742></a>4YPB:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13629></a>4Y4P:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13623></a>4Y4O:1:1A,2A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13532></a>4XEJ:51:A23S,B23S|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 13449></a>4WZO:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13435></a>4WZD:24:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13411></a>4WU1:24:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13382></a>4WT1:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13375></a>4WSM:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13368></a>4WSD:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13352></a>4WRO:5:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13346></a>4WRA:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2918
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 566 gccccgcaaggg 577
</PRE>
<PRE>
><a name = 13338></a>4WR6:25:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13327></a>4WQY:1:AA,CA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13322></a>4WQU:1:AA,CA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13315></a>4WQR:26:14,1H|pdbid|entity|chain(s)|sequence
Length = 2917
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13307></a>4WQF:1:AA,CA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13303></a>4WQ1:25:14,1H|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13295></a>4WPO:1:AA,CA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13225></a>4W4G:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13220></a>4W2I:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13214></a>4W2H:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13208></a>4W2G:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13202></a>4W2F:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13194></a>4W2E:1:A|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13187></a>4W29:59:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 13184></a>4V9S:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13179></a>4V9R:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13173></a>4V9Q:1:AA,CA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 13163></a>4V9N:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 13156></a>4V9M:58:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 13151></a>4V9L:59:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 13146></a>4V9K:59:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 13140></a>4V9J:60:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 13138></a>4V9I:26:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13130></a>4V9H:25:BA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13108></a>4V9B:24:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13103></a>4V9A:24:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 13100></a>4V97:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13094></a>4V95:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13084></a>4V90:35:BA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13067></a>4V8X:36:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2848
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 558 gccccgcaaggg 569
</PRE>
<PRE>
><a name = 13060></a>4V8U:36:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13047></a>4V8Q:11:AA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13039></a>4V8O:35:BA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13034></a>4V8N:35:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13018></a>4V8J:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 13012></a>4V8I:23:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13009></a>4V8H:23:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2913
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 561 gccccgcaaggg 572
</PRE>
<PRE>
><a name = 13006></a>4V8G:23:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 13002></a>4V8F:1:AA,DA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12996></a>4V8E:1:AA,CA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12991></a>4V8D:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12984></a>4V8C:1:AA,BA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12979></a>4V8B:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12972></a>4V8A:1:AA,BA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 12960></a>4V87:1:AA,DA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12950></a>4V84:23:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 12946></a>4V83:23:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 12908></a>4V7P:25:BA,CA|pdbid|entity|chain(s)|sequence
Length = 2879
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 12902></a>4V7M:27:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 12894></a>4V7L:27:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 12884></a>4V7K:57:AA,BA|pdbid|entity|chain(s)|sequence
Length = 2848
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 558 gccccgcaaggg 569
</PRE>
<PRE>
><a name = 12878></a>4V7J:57:AA,BA|pdbid|entity|chain(s)|sequence
Length = 2848
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 558 gccccgcaaggg 569
</PRE>
<PRE>
><a name = 12680></a>4V6G:24:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2898
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 560 gccccgcaaggg 571
</PRE>
<PRE>
><a name = 12677></a>4V6F:1:AA|pdbid|entity|chain(s)|sequence
Length = 2909
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 562 gccccgcaaggg 573
</PRE>
<PRE>
><a name = 12673></a>4V6F:55:DA|pdbid|entity|chain(s)|sequence
Length = 2912
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12652></a>4V6A:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 12632></a>4V67:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2894
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12614></a>4V63:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2894
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12402></a>4V5S:36:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12396></a>4V5R:36:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12390></a>4V5Q:36:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12384></a>4V5P:36:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12377></a>4V5N:35:BA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12372></a>4V5M:35:BA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12367></a>4V5L:36:BA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12361></a>4V5K:35:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2848
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 558 gccccgcaaggg 569
</PRE>
<PRE>
><a name = 12355></a>4V5J:35:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12345></a>4V5G:36:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12339></a>4V5F:35:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 12334></a>4V5E:35:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2901
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 558 gccccgcaaggg 569
</PRE>
<PRE>
><a name = 12278></a>4V4Z:25:BA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12269></a>4V4Y:24:BA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12264></a>4V4X:24:BA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12255></a>4V4T:26:BA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12249></a>4V4S:27:BA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12243></a>4V4R:27:BA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12231></a>4V4P:2:AA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12220></a>4V4J:1:w|pdbid|entity|chain(s)|sequence
Length = 2889
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12214></a>4V4I:1:w|pdbid|entity|chain(s)|sequence
Length = 2889
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 12184></a>4V42:25:BA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
><a name = 11881></a>4TUE:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 11874></a>4TUD:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 11867></a>4TUC:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 11860></a>4TUB:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 11853></a>4TUA:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 11364></a>4P70:22:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 11357></a>4P6F:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 10916></a>4LT8:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 10907></a>4LSK:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 10893></a>4LNT:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 10873></a>4LFZ:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 10855></a>4LEL:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 10834></a>4L71:22:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 10822></a>4L47:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 3079></a>1VY7:26:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 3072></a>1VY6:25:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 3066></a>1VY5:26:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 3059></a>1VY4:26:BA,DA|pdbid|entity|chain(s)|sequence
Length = 2915
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 563 gccccgcaaggg 574
</PRE>
<PRE>
><a name = 3052></a>1VVJ:25:RA,YA|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 564 gccccgcaaggg 575
</PRE>
<PRE>
><a name = 1790></a>1ML5:4:a|pdbid|entity|chain(s)|sequence
Length = 2916
Score = 24.3 bits (12), Expect = 6.2
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 36 gccccgcaaggg 47
||||||||||||
Sbjct: 565 gccccgcaaggg 576
</PRE>
<PRE>
Database: pdb_nucleotide
Posted date: Oct 30, 2016 3:26 AM
Number of letters in database: 2,694,141
Number of sequences in database: 15,787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 15787
Number of Hits to DB: 2101
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 10.0: 149
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 149
Length of query: 65
Length of database: 2,694,141
Length adjustment: 14
Effective length of query: 51
Effective length of database: 2,473,123
Effective search space: 126129273
Effective search space used: 126129273
X1: 10 (19.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 10 (20.3 bits)
S2: 12 (24.3 bits)
</PRE>
</BODY>
</HTML>
In [ ]:
from rna_pdb_tools.pdb_parser_lib import RNAStructure
fn = "rna_pdb_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb"
s = RNAStructure(fn)
print s.get_report()
print s.get_info_chains()
print s.get_head()
#print s.view() # image paste here :-)
In [ ]:
%%bash
cd rna_pdb_tools
./rna-pdb-tools.py --no_hr --get_seq data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb
In [ ]:
# model using SimRNA
#res = SimRNA(ss,seq.get_ss())
In [ ]:
# fake import, should be
res = "rna_pdb_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb"
# view
view = nglview.show_structure_file(res)
view.add_representation(repr_type='cartoon')
view
In [ ]:
%%bash
cd rna_pdb_tools
./rna-pdb-tools.py --no_hr --get_seq input/5k7c.pdb
In [ ]:
%%bash
cd rna_pdb_tools
./rna-pdb-tools.py --no_hr --get_seq input/5k7c.pdb
./rna-pdb-tools.py --no_hr --get_seq input/tetraloop.pdb
./rna-pdb-tools.py --get_seq input/1xjr.pdb
In [ ]:
Content source: m4rx9/rna-pdb-tools
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