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Parameter scan

Perform a parameter scan.


In [2]:
%matplotlib inline
from __future__ import print_function
import tellurium as te

r = te.loada('''
    J1: $Xo -> x; 0.1 + k1*x^4/(k2+x^4);
    x -> $w; k3*x;

    k1 = 0.9;
    k2 = 0.3;
    k3 = 0.7;
    x = 0;
''')

# parameter scan
p = te.ParameterScan(r,
    # settings
    startTime = 0,
    endTime = 15,
    numberOfPoints = 50,
    polyNumber = 10,
    endValue = 1.8,
    alpha = 0.8,
    value = "x",
    selection = "x",
    color = ['#0F0F3D', '#141452', '#1A1A66', '#1F1F7A', '#24248F', '#2929A3',
               '#2E2EB8', '#3333CC', '#4747D1', '#5C5CD6']                    
)
# plot
p.plotPolyArray()



In [3]:
r = te.loada('''
    $Xo -> S1; vo;
    S1 -> S2; k1*S1 - k2*S2;
    S2 -> $X1; k3*S2;
    
    vo = 1
    k1 = 2; k2 = 0; k3 = 3;
''')

# parameter scan
p = te.ParameterScan(r,
    # settings
    startTime = 0,
    endTime = 6,
    numberOfPoints = 50,
    startValue = 1,
    endValue = 5,
    colormap = "cool",
    independent = ["Time", "k1"],
    dependent = "S1",
    xlabel = "Time",
    ylabel = "x",
    title = "Model"                                  
)
# plot
p.plotSurface()



In [ ]: