

In [1]:

    
%matplotlib inline
import os, sys
import ntpath
from eden.util import display
# -----------------------------------------------------------------------------



In [2]:

    
from graph_finder import GraphFinder

Experiments:

read a single '.sto' file and converted to a graph



In [3]:

    
file_path = "StoExamples/StoExmapleSmall/positives-sto/550-53949-1-0.sto"
abs_path = os.path.abspath(file_path)
gf = GraphFinder()
Graph = gf.file_to_graph(file_path)









    



{'graph_title': '550-53949-1-0'}

display the created graph



In [4]:

    
display.draw_graph(Graph, size=40, node_size=400, font_size=20, node_border=True, prog='neato')

transform the created graph to have the desired type of info(end user specification)



In [5]:

    
graph_transform = gf.transform(Graph, use_seq= False, use_cov = True, use_cor = False, use_ent = True)

draw the transformed graph



In [6]:

    
display.draw_graph(Graph, size=40, node_size=400, font_size=20, node_border=True, prog='neato')