In [159]:
import sys
sys.path.append('../../') # or non-Unix equivalent (add wikienergy/ to path)
from collections import OrderedDict
import itertools
import numpy as np
from hmmlearn import hmm
import matplotlib.pyplot as plt
import matplotlib.cm as cm
%matplotlib inline
import pylab
from pylab import plot, show, title, xlabel, ylabel, subplot
pylab.rcParams['figure.figsize'] = 12,9
In [174]:
import pickle
with open('../../data/may_air.pkl','rb') as f:
devices_models['air1']=pickle.load(f)
In [173]:
with open('may_air.pkl','w') as f:
pickle.dump(devices_models['air1'],f)
In [176]:
Out[176]:
OrderedDict([(26, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (59, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (1782, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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transmat=None, transmat_prior=None)), (8218, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
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means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (8292, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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means_prior=None, means_weight=0, n_components=3, n_iter=10,
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means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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transmat=None, transmat_prior=None)), (8419, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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transmat=None, transmat_prior=None)), (8645, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9160, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9343, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9356, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9484, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9499, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9609, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9613, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
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means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9701, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
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init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9737, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9771, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9830, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9875, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9915, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9922, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9926, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9932, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9934, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9938, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9939, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9982, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None)), (9983, GaussianHMM(algorithm='viterbi', covariance_type='full', covars_prior=0.01,
covars_weight=1,
init_params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
means_prior=None, means_weight=0, n_components=3, n_iter=10,
params='abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ',
random_state=None, startprob=None, startprob_prior=None, thresh=0.01,
transmat=None, transmat_prior=None))])
In [161]:
#startprob_
#means_
#transmat_
#covars_
state_0=[]
state_1=[]
state_2=[]
for model_num in devices_models['air1']:
a=devices_models['air1'][model_num].means_
state_0.append(a[0][0])
state_1.append(a[1][0])
state_2.append(a[2][0])
high_lim=10
bins=30
plt.subplot(3,1,1)
plt.hist(state_0,bins,range=[0,high_lim])
plt.xlim([0 ,high_lim])
plt.subplot(3,1,2)
plt.hist(state_1,bins,range=[0,high_lim])
plt.xlim([0 ,high_lim])
plt.subplot(3,1,3)
plt.hist(state_2,bins,range=[0,high_lim])
plt.xlim([0 ,high_lim])
Out[161]:
(0, 10)
In [162]:
"""
Show how to modify the coordinate formatter to report the image "z"
value of the nearest pixel given x and y
"""
def format_coord(x, y):
col = int(x+0.5)
row = int(y+0.5)
if col>=0 and col<numcols and row>=0 and row<numrows:
z = X[row,col]
return 'x=%1.4f, y=%1.4f, z=%1.4f'%(x, y, z)
else:
return 'x=%1.4f, y=%1.4f'%(x, y)
In [163]:
X = 10*np.random.rand(5,3)
a=[]
for model_num in devices_models['air1']:
a.extend(np.array([devices_models['air1'][model_num].means_[0],devices_models['air1'][model_num].means_[1],devices_models['air1'][model_num].means_[2]]).T)
a=np.array(a).T
idx = np.argsort(a[2])
c = a.copy()
for i in range(len(idx)):
a[:,i] = c[:,idx[i]]
pylab.rcParams['figure.figsize'] = 10, 10
fig, ax = plt.subplots()
ax.imshow(a, cmap='Blues', interpolation='nearest',aspect='auto')
plt.show()
In [ ]:
Content source: dssg/wikienergy
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