In [2]:
import networkx as nx
%matplotlib inline
Outline:
In [3]:
G = nx.Graph() #create a graph
G.add_nodes_from([0,1,2,3]) #add some nodes
G.add_edges_from([(0,1),(1,2),(2,3),(3,0)]) #add some edges
pos = {0:[1,1],1:[1,2],2:[2,3],3:[3,2]} #dictionary of positions
In [4]:
nx.draw_networkx(G,pos) #plot edges as lines, nodes as dots + labels
In [5]:
nx.draw_networkx_nodes(G,pos) #plot only the nodes
Out[5]:
<matplotlib.collections.PathCollection at 0x7fe7d4ab3630>
In [6]:
nx.draw_networkx_edges(G,pos) #plot only the edges
Out[6]:
<matplotlib.collections.LineCollection at 0x7fe7d4a93e10>
Creating a position-dictionary each time is tedious. Sometimes graphs don't even have a geometry to use. Thankfully NetworkX provides us with some standard layouts to plot graphs.
In [7]:
#random graph with edge probability of 0.3
G = nx.gnp_random_graph(20,0.3)
In [9]:
pos_circular = nx.circular_layout(G)
nx.draw_networkx(G,pos_circular)
print(pos_circular)
{0: array([ 1., 0.]), 1: array([ 0.95105652, 0.30901699]), 2: array([ 0.80901699, 0.58778525]), 3: array([ 0.58778525, 0.80901699]), 4: array([ 0.30901699, 0.95105652]), 5: array([ 6.12323400e-17, 1.00000000e+00]), 6: array([-0.30901699, 0.95105652]), 7: array([-0.58778525, 0.80901699]), 8: array([-0.80901699, 0.58778525]), 9: array([-0.95105652, 0.30901699]), 10: array([ -1.00000000e+00, 1.22464680e-16]), 11: array([-0.95105652, -0.30901699]), 12: array([-0.80901699, -0.58778525]), 13: array([-0.58778525, -0.80901699]), 14: array([-0.30901699, -0.95105652]), 15: array([ -1.83697020e-16, -1.00000000e+00]), 16: array([ 0.30901699, -0.95105652]), 17: array([ 0.58778525, -0.80901699]), 18: array([ 0.80901699, -0.58778525]), 19: array([ 0.95105652, -0.30901699])}
In [10]:
pos_random = nx.random_layout(G)
nx.draw(G,pos_random)
In [12]:
pos_shell = nx.shell_layout(G)
nx.draw(G,pos_shell)
In [13]:
pos_spring = nx.spring_layout(G)
nx.draw(G,pos_spring)
In [14]:
pos_spectral = nx.spectral_layout(G)
nx.draw(G,pos_spectral)
Now we want to plot only the nodes [3,4,5,6] and all edges connected to them
In [15]:
nodes = [3,4,5,6]
edges = [e for e in G.edges() if e[0] in nodes or e[1] in nodes]
nx.draw_networkx_nodes(G,pos_spring, nodelist=nodes)
nx.draw_networkx_edges(G,pos_spring,edgelist=edges)
Out[15]:
<matplotlib.collections.LineCollection at 0x7fe7cefe2d68>
Nearly all of matplotlib's options for color, transparency etc. can be used via NetworkX's draw-functions:
node_size
and node_shape
node_color
or providing a cmap
width
and style
edge_color
and edge_cmap
alpha
In [17]:
import matplotlib.pyplot as plt
G = nx.gnp_random_graph(30,0.15)
pos = nx.circular_layout(G)
blues = plt.cm.Blues
reds = plt.cm.hot
nx.draw_networkx_nodes(G,pos,node_color=range(30),cmap=blues)
nx.draw_networkx_edges(G,pos,edge_color=range(len(G.edges())),edge_cmap=reds,width=3)
Out[17]:
<matplotlib.collections.LineCollection at 0x7fe7cee8a828>
We can store attrobutes for nodes and edges by assigning vaules in the node/edge dictionaries, remember?
In [19]:
G = nx.Graph()
G.add_nodes_from([1,2,3,4])
G.node[1]['mood'] = 'happy'
G.node[2]['mood'] = 'sad'
G.node[3]['mood'] = 'bored'
G.node[4]['x'] = 2.0
In [20]:
G.node[1]['mood']
Out[20]:
'happy'
In [22]:
G.node[4]['x']
Out[22]:
2.0
In [25]:
G = nx.read_graphml("../data/visualization/medium_graph.xml")
print(len(G.nodes()))
1032
In [7]:
G.nodes(data=True)
Out[7]:
[('2300', {'conductivity': 10.0, 'x': 698.200012207, 'y': 781.599975586}),
('687', {'conductivity': 7.0, 'x': 416.5, 'y': 821.0}),
('4825', {'conductivity': 9.0, 'x': 826.299987793, 'y': 582.0}),
('3911', {'conductivity': 6.0, 'x': 1018.0, 'y': 1046.0}),
('4884', {'conductivity': 7.0, 'x': 915.0, 'y': 493.5}),
('5436', {'conductivity': 7.0, 'x': 1150.5, 'y': 438.5}),
('2327', {'conductivity': 6.0, 'x': 737.5, 'y': 722.0}),
('5495', {'conductivity': 7.0, 'x': 1035.0, 'y': 401.5}),
('732', {'conductivity': 6.0, 'x': 557.5, 'y': 1338.5}),
('4180', {'conductivity': 5.0, 'x': 1142.5, 'y': 913.0}),
('1648', {'conductivity': 6.0, 'x': 495.0, 'y': 684.5}),
('5504', {'conductivity': 6.0, 'x': 1053.0, 'y': 420.5}),
('4982', {'conductivity': 7.0, 'x': 819.0, 'y': 252.0}),
('1343', {'conductivity': 6.0, 'x': 681.5, 'y': 854.5}),
('5158', {'conductivity': 6.0, 'x': 993.5, 'y': 779.0}),
('773', {'conductivity': 7.0, 'x': 608.5, 'y': 1361.0}),
('4945', {'conductivity': 6.0, 'x': 854.0, 'y': 446.5}),
('993', {'conductivity': 7.0, 'x': 712.0, 'y': 1274.0}),
('3280', {'conductivity': 8.0, 'x': 776.0, 'y': 933.0}),
('978', {'conductivity': 7.0, 'x': 656.5, 'y': 1254.0}),
('1231', {'conductivity': 6.0, 'x': 702.0, 'y': 961.0}),
('186', {'conductivity': 7.0, 'x': 467.0, 'y': 1281.0}),
('2054', {'conductivity': 7.0, 'x': 489.0, 'y': 385.5}),
('4234', {'conductivity': 7.0, 'x': 1232.0, 'y': 927.5}),
('4710', {'conductivity': 6.0, 'x': 801.0, 'y': 471.5}),
('1442', {'conductivity': 7.0, 'x': 260.5, 'y': 727.5}),
('3269', {'conductivity': 6.0, 'x': 775.0, 'y': 953.5}),
('2138', {'conductivity': 8.0, 'x': 618.0, 'y': 753.5}),
('2402', {'conductivity': 6.0, 'x': 739.5, 'y': 666.5}),
('860', {'conductivity': 6.0, 'x': 589.5, 'y': 1271.5}),
('4181', {'conductivity': 4.0, 'x': 1148.5, 'y': 915.5}),
('3235', {'conductivity': 9.0, 'x': 749.0, 'y': 975.75}),
('4356', {'conductivity': 5.0, 'x': 778.5, 'y': 743.0}),
('5634', {'conductivity': 7.0, 'x': 1170.0, 'y': 447.5}),
('36', {'conductivity': 6.0, 'x': 365.5, 'y': 1153.5}),
('1500', {'conductivity': 6.0, 'x': 270.0, 'y': 678.0}),
('1391', {'conductivity': 6.0, 'x': 720.0, 'y': 797.5}),
('4292', {'conductivity': 6.0, 'x': 759.5, 'y': 755.5}),
('4456', {'conductivity': 6.0, 'x': 866.5, 'y': 849.5}),
('4266', {'conductivity': 6.0, 'x': 778.0, 'y': 878.0}),
('5498', {'conductivity': 7.0, 'x': 1093.5, 'y': 427.0}),
('923', {'conductivity': 6.0, 'x': 735.5, 'y': 1398.0}),
('4583', {'conductivity': 6.0, 'x': 868.0, 'y': 714.0}),
('3180', {'conductivity': 6.0, 'x': 805.5, 'y': 988.5}),
('622', {'conductivity': 7.0, 'x': 373.399993896, 'y': 899.599975586}),
('5145', {'conductivity': 5.0, 'x': 1102.5, 'y': 839.5}),
('3892', {'conductivity': 6.0, 'x': 1035.0, 'y': 1065.0}),
('5273', {'conductivity': 6.0, 'x': 1161.0, 'y': 820.5}),
('2505', {'conductivity': 6.0, 'x': 587.5, 'y': 467.5}),
('3504', {'conductivity': 6.0, 'x': 957.0, 'y': 911.5}),
('2024', {'conductivity': 7.0, 'x': 460.5, 'y': 361.5}),
('4290', {'conductivity': 6.0, 'x': 773.5, 'y': 772.0}),
('4194', {'conductivity': 5.0, 'x': 1183.0, 'y': 909.5}),
('4171', {'conductivity': 7.0, 'x': 1152.0, 'y': 985.0}),
('1660', {'conductivity': 6.0, 'x': 404.5, 'y': 661.0}),
('5180', {'conductivity': 5.0, 'x': 1108.5, 'y': 884.5}),
('2045', {'conductivity': 6.0, 'x': 484.5, 'y': 412.5}),
('2519', {'conductivity': 7.0, 'x': 556.0, 'y': 344.5}),
('863', {'conductivity': 5.0, 'x': 646.0, 'y': 1361.5}),
('2446', {'conductivity': 9.0, 'x': 531.5, 'y': 574.5}),
('5240', {'conductivity': 7.0, 'x': 1236.0, 'y': 899.5}),
('3541', {'conductivity': 7.0, 'x': 1019.0, 'y': 1392.0}),
('3145', {'conductivity': 6.0, 'x': 791.0, 'y': 1056.5}),
('3169', {'conductivity': 9.0, 'x': 814.200012207, 'y': 997.099975586}),
('4838', {'conductivity': 7.0, 'x': 828.5, 'y': 514.0}),
('1594', {'conductivity': 7.0, 'x': 383.0, 'y': 728.0}),
('786', {'conductivity': 5.0, 'x': 573.0, 'y': 1286.0}),
('2213', {'conductivity': 8.0, 'x': 563.5, 'y': 663.5}),
('1106', {'conductivity': 7.0, 'x': 592.5, 'y': 1159.0}),
('660', {'conductivity': 7.0, 'x': 441.5, 'y': 953.5}),
('4191', {'conductivity': 5.0, 'x': 1176.5, 'y': 915.0}),
('5033', {'conductivity': 7.0, 'x': 966.5, 'y': 865.0}),
('2690', {'conductivity': 6.0, 'x': 639.0, 'y': 301.5}),
('1674', {'conductivity': 7.0, 'x': 414.5, 'y': 641.5}),
('5683', {'conductivity': 7.0, 'x': 1232.0, 'y': 582.5}),
('4055', {'conductivity': 6.0, 'x': 1093.0, 'y': 948.0}),
('2892', {'conductivity': 7.0, 'x': 772.0, 'y': 1235.0}),
('4793', {'conductivity': 6.0, 'x': 808.5, 'y': 281.0}),
('969', {'conductivity': 6.0, 'x': 683.5, 'y': 1266.0}),
('5581', {'conductivity': 7.0, 'x': 1290.0, 'y': 710.0}),
('1058', {'conductivity': 6.0, 'x': 541.0, 'y': 1104.0}),
('323', {'conductivity': 6.0, 'x': 481.5, 'y': 1104.0}),
('1797', {'conductivity': 5.0, 'x': 391.0, 'y': 591.0}),
('1250', {'conductivity': 7.0, 'x': 687.0, 'y': 907.5}),
('4547', {'conductivity': 6.0, 'x': 837.5, 'y': 729.0}),
('1729', {'conductivity': 7.0, 'x': 434.0, 'y': 607.0}),
('1435', {'conductivity': 8.0, 'x': 257.0, 'y': 736.5}),
('5576', {'conductivity': 7.0, 'x': 1258.0, 'y': 689.0}),
('1105', {'conductivity': 6.0, 'x': 586.5, 'y': 1154.5}),
('3674', {'conductivity': 8.0, 'x': 1055.5, 'y': 1188.0}),
('4759', {'conductivity': 6.0, 'x': 785.0, 'y': 417.5}),
('693', {'conductivity': 6.0, 'x': 364.0, 'y': 955.0}),
('3415', {'conductivity': 6.0, 'x': 954.5, 'y': 1045.0}),
('2340', {'conductivity': 6.0, 'x': 740.5, 'y': 727.0}),
('155', {'conductivity': 5.0, 'x': 415.0, 'y': 1062.0}),
('265', {'conductivity': 5.0, 'x': 476.0, 'y': 1124.0}),
('3217', {'conductivity': 7.0, 'x': 816.0, 'y': 1010.0}),
('621', {'conductivity': 5.0, 'x': 361.5, 'y': 890.5}),
('127', {'conductivity': 5.0, 'x': 352.5, 'y': 1092.5}),
('597', {'conductivity': 7.0, 'x': 454.0, 'y': 980.5}),
('337', {'conductivity': 6.0, 'x': 505.5, 'y': 1059.5}),
('4806', {'conductivity': 3.0, 'x': 819.5, 'y': 624.5}),
('3396', {'conductivity': 6.0, 'x': 959.0, 'y': 1053.0}),
('321', {'conductivity': 7.0, 'x': 481.5, 'y': 1103.0}),
('5491', {'conductivity': 7.0, 'x': 1032.0, 'y': 356.5}),
('5248', {'conductivity': 7.0, 'x': 1237.0, 'y': 896.5}),
('750', {'conductivity': 8.0, 'x': 637.599975586, 'y': 1371.3999939}),
('1545', {'conductivity': 5.0, 'x': 347.5, 'y': 669.5}),
('611', {'conductivity': 7.0, 'x': 384.5, 'y': 948.0}),
('2416', {'conductivity': 7.0, 'x': 727.5, 'y': 634.0}),
('887', {'conductivity': 5.0, 'x': 655.5, 'y': 1339.5}),
('948', {'conductivity': 7.0, 'x': 742.5, 'y': 1283.5}),
('2795', {'conductivity': 7.0, 'x': 764.200012207, 'y': 1287.6000061}),
('567', {'conductivity': 7.0, 'x': 472.5, 'y': 1009.5}),
('5106', {'conductivity': 6.0, 'x': 935.5, 'y': 790.0}),
('5589', {'conductivity': 7.0, 'x': 1220.0, 'y': 705.0}),
('5500', {'conductivity': 9.0, 'x': 1043.80004883, 'y': 417.699951172}),
('4449', {'conductivity': 6.0, 'x': 856.5, 'y': 838.0}),
('3010', {'conductivity': 7.0, 'x': 974.5, 'y': 1400.25}),
('1718', {'conductivity': 7.0, 'x': 437.5, 'y': 663.5}),
('4534', {'conductivity': 6.0, 'x': 831.0, 'y': 739.5}),
('161', {'conductivity': 5.0, 'x': 427.0, 'y': 1057.5}),
('3228', {'conductivity': 6.0, 'x': 845.5, 'y': 1026.5}),
('2314', {'conductivity': 6.0, 'x': 709.5, 'y': 764.0}),
('1710', {'conductivity': 6.0, 'x': 486.5, 'y': 667.0}),
('2935', {'conductivity': 7.0, 'x': 898.75, 'y': 1091.0}),
('4342', {'conductivity': 6.0, 'x': 784.0, 'y': 776.0}),
('3302', {'conductivity': 6.0, 'x': 854.0, 'y': 950.5}),
('3817', {'conductivity': 6.0, 'x': 1097.5, 'y': 1115.5}),
('5102', {'conductivity': 6.0, 'x': 956.0, 'y': 814.0}),
('5103', {'conductivity': 7.0, 'x': 958.0, 'y': 820.5}),
('922', {'conductivity': 7.0, 'x': 714.0, 'y': 1394.0}),
('4243', {'conductivity': 6.0, 'x': 1172.0, 'y': 1114.0}),
('3307', {'conductivity': 9.0, 'x': 817.5, 'y': 926.5}),
('2642', {'conductivity': 6.0, 'x': 717.0, 'y': 588.5}),
('525', {'conductivity': 6.0, 'x': 403.5, 'y': 1003.5}),
('2309', {'conductivity': 7.0, 'x': 701.0, 'y': 750.5}),
('1827', {'conductivity': 7.0, 'x': 348.5, 'y': 507.5}),
('5046', {'conductivity': 6.0, 'x': 1018.0, 'y': 891.5}),
('116', {'conductivity': 7.0, 'x': 313.0, 'y': 1045.5}),
('5235', {'conductivity': 5.0, 'x': 1181.0, 'y': 893.5}),
('416', {'conductivity': 5.0, 'x': 288.0, 'y': 961.5}),
('1653', {'conductivity': 7.0, 'x': 491.5, 'y': 678.5}),
('1452', {'conductivity': 7.0, 'x': 262.0, 'y': 715.0}),
('1474', {'conductivity': 5.0, 'x': 312.0, 'y': 765.5}),
('4789', {'conductivity': 8.0, 'x': 795.799987793, 'y': 262.400024414}),
('1053', {'conductivity': 7.0, 'x': 558.0, 'y': 1193.5}),
('106', {'conductivity': 5.0, 'x': 338.0, 'y': 1095.5}),
('3356', {'conductivity': 7.0, 'x': 867.5, 'y': 1046.0}),
('2593', {'conductivity': 8.0, 'x': 591.400024414, 'y': 370.199951172}),
('5135', {'conductivity': 6.0, 'x': 994.0, 'y': 847.0}),
('5090', {'conductivity': 6.0, 'x': 945.5, 'y': 799.5}),
('2622', {'conductivity': 5.0, 'x': 658.0, 'y': 556.5}),
('3052', {'conductivity': 7.0, 'x': 958.5, 'y': 1239.0}),
('2444', {'conductivity': 6.0, 'x': 553.5, 'y': 597.5}),
('1354', {'conductivity': 6.0, 'x': 698.5, 'y': 844.5}),
('4770', {'conductivity': 6.0, 'x': 796.5, 'y': 433.0}),
('5564', {'conductivity': 7.0, 'x': 1208.5, 'y': 617.0}),
('667', {'conductivity': 6.0, 'x': 435.5, 'y': 941.5}),
('5678', {'conductivity': 7.0, 'x': 1218.0, 'y': 573.0}),
('5608', {'conductivity': 7.0, 'x': 1228.5, 'y': 667.5}),
('3689', {'conductivity': 7.0, 'x': 1038.5, 'y': 1175.0}),
('339', {'conductivity': 6.0, 'x': 506.5, 'y': 1062.5}),
('3439', {'conductivity': 6.0, 'x': 908.0, 'y': 1011.0}),
('2334', {'conductivity': 6.0, 'x': 748.5, 'y': 741.0}),
('1904', {'conductivity': 7.0, 'x': 433.0, 'y': 397.0}),
('4003', {'conductivity': 6.0, 'x': 1047.0, 'y': 922.0}),
('1937', {'conductivity': 5.0, 'x': 439.0, 'y': 509.5}),
('3423', {'conductivity': 6.0, 'x': 917.0, 'y': 1015.0}),
('505', {'conductivity': 5.0, 'x': 321.5, 'y': 871.5}),
('1990', {'conductivity': 7.0, 'x': 497.5, 'y': 523.5}),
('4780', {'conductivity': 6.0, 'x': 801.5, 'y': 304.5}),
('495', {'conductivity': 5.0, 'x': 351.0, 'y': 886.0}),
('4569', {'conductivity': 9.0, 'x': 863.400024414, 'y': 702.450012207}),
('4819', {'conductivity': 6.0, 'x': 832.0, 'y': 589.0}),
('2952', {'conductivity': 6.0, 'x': 932.0, 'y': 1163.5}),
('1035', {'conductivity': 5.0, 'x': 540.5, 'y': 1198.5}),
('3955', {'conductivity': 6.0, 'x': 1099.5, 'y': 1006.0}),
('2471', {'conductivity': 7.0, 'x': 535.5, 'y': 520.0}),
('1098', {'conductivity': 7.0, 'x': 637.0, 'y': 1183.5}),
('5509', {'conductivity': 7.0, 'x': 1042.0, 'y': 324.5}),
('3864', {'conductivity': 7.0, 'x': 1174.0, 'y': 1129.5}),
('2427', {'conductivity': 6.0, 'x': 707.5, 'y': 790.0}),
('4207', {'conductivity': 6.0, 'x': 1183.0, 'y': 988.0}),
('2647', {'conductivity': 6.0, 'x': 744.5, 'y': 608.0}),
('4134', {'conductivity': 6.0, 'x': 1187.5, 'y': 1030.0}),
('764', {'conductivity': 7.0, 'x': 583.0, 'y': 1351.0}),
('2743', {'conductivity': 7.0, 'x': 706.0, 'y': 291.0}),
('4799', {'conductivity': 7.0, 'x': 809.5, 'y': 255.0}),
('731', {'conductivity': 6.0, 'x': 551.5, 'y': 1335.5}),
('2691', {'conductivity': 6.0, 'x': 606.5, 'y': 292.0}),
('726', {'conductivity': 5.0, 'x': 546.5, 'y': 1318.0}),
('1969', {'conductivity': 9.0, 'x': 494.0, 'y': 564.5}),
('4973', {'conductivity': 6.0, 'x': 854.0, 'y': 325.5}),
('5617', {'conductivity': 7.0, 'x': 1178.0, 'y': 592.0}),
('556', {'conductivity': 7.0, 'x': 389.5, 'y': 963.0}),
('514', {'conductivity': 5.0, 'x': 352.5, 'y': 791.0}),
('3843', {'conductivity': 7.0, 'x': 1172.5, 'y': 1178.0}),
('2368', {'conductivity': 6.0, 'x': 626.5, 'y': 639.5}),
('4015', {'conductivity': 7.0, 'x': 1064.0, 'y': 972.5}),
('5413', {'conductivity': 7.0, 'x': 1154.0, 'y': 441.0}),
('4303', {'conductivity': 6.0, 'x': 791.0, 'y': 885.5}),
('4893', {'conductivity': 6.0, 'x': 840.0, 'y': 479.5}),
('4855', {'conductivity': 6.0, 'x': 842.0, 'y': 569.5}),
('3705', {'conductivity': 5.0, 'x': 1061.5, 'y': 1362.0}),
('2142', {'conductivity': 9.0, 'x': 573.75, 'y': 727.900024414}),
('872', {'conductivity': 5.0, 'x': 650.0, 'y': 1353.5}),
('617', {'conductivity': 6.0, 'x': 379.5, 'y': 935.5}),
('2355', {'conductivity': 6.0, 'x': 664.5, 'y': 701.0}),
('4923', {'conductivity': 6.0, 'x': 832.0, 'y': 305.5}),
('1043', {'conductivity': 7.0, 'x': 541.5, 'y': 1178.0}),
('5216', {'conductivity': 5.0, 'x': 1151.0, 'y': 865.5}),
('2990', {'conductivity': 7.0, 'x': 948.0, 'y': 1288.0}),
('3265', {'conductivity': 6.0, 'x': 756.0, 'y': 924.5}),
('3629', {'conductivity': 7.0, 'x': 1006.0, 'y': 1146.0}),
('3377', {'conductivity': 8.0, 'x': 929.700012207, 'y': 1073.20001221}),
('3697', {'conductivity': 7.0, 'x': 1048.5, 'y': 1184.5}),
('4374', {'conductivity': 6.0, 'x': 758.0, 'y': 637.0}),
('5659', {'conductivity': 7.0, 'x': 1232.5, 'y': 584.0}),
('68', {'conductivity': 5.0, 'x': 401.5, 'y': 1160.5}),
('1211', {'conductivity': 8.0, 'x': 668.0, 'y': 835.0}),
('27', {'conductivity': 7.0, 'x': 357.0, 'y': 1138.0}),
('5620', {'conductivity': 7.0, 'x': 1187.0, 'y': 588.0}),
('1015', {'conductivity': 7.0, 'x': 711.5, 'y': 1209.5}),
('4244', {'conductivity': 6.0, 'x': 1034.0, 'y': 905.0}),
('4708', {'conductivity': 6.0, 'x': 801.5, 'y': 452.5}),
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('579', {'conductivity': 7.0, 'x': 482.0, 'y': 1025.0}),
('3860', {'conductivity': 7.0, 'x': 1185.0, 'y': 1158.5}),
('1209', {'conductivity': 9.0, 'x': 646.5, 'y': 816.5}),
('2826', {'conductivity': 6.0, 'x': 822.5, 'y': 1407.0}),
('2620', {'conductivity': 4.0, 'x': 654.0, 'y': 555.0}),
('4479', {'conductivity': 7.0, 'x': 873.5, 'y': 790.5}),
('4377', {'conductivity': 4.0, 'x': 755.5, 'y': 691.0}),
('3673', {'conductivity': 6.0, 'x': 1035.5, 'y': 1249.0}),
('2372', {'conductivity': 7.0, 'x': 622.5, 'y': 614.0}),
('4972', {'conductivity': 6.0, 'x': 854.0, 'y': 344.5}),
('5007', {'conductivity': 6.0, 'x': 949.0, 'y': 901.5}),
('1939', {'conductivity': 9.0, 'x': 458.600006104, 'y': 549.449951172}),
('5601', {'conductivity': 6.0, 'x': 1230.0, 'y': 633.0}),
('1876', {'conductivity': 5.0, 'x': 422.5, 'y': 457.5}),
('2819', {'conductivity': 7.0, 'x': 821.0, 'y': 1406.0}),
('4984', {'conductivity': 9.0, 'x': 817.400024414, 'y': 578.699951172}),
('3645', {'conductivity': 7.0, 'x': 1024.5, 'y': 1132.0}),
('1819', {'conductivity': 5.0, 'x': 362.5, 'y': 552.0}),
('3909', {'conductivity': 7.0, 'x': 1011.0, 'y': 1036.0}),
('4269', {'conductivity': 6.0, 'x': 770.5, 'y': 873.0}),
('1152', {'conductivity': 6.0, 'x': 574.0, 'y': 806.5}),
('4932', {'conductivity': 7.0, 'x': 821.5, 'y': 368.0}),
('2393', {'conductivity': 6.0, 'x': 734.0, 'y': 686.5}),
('1999', {'conductivity': 6.0, 'x': 439.5, 'y': 388.0}),
('971', {'conductivity': 6.0, 'x': 674.0, 'y': 1261.5}),
('2715', {'conductivity': 7.0, 'x': 645.0, 'y': 270.0}),
('2936', {'conductivity': 6.0, 'x': 890.5, 'y': 1080.0}),
('4251', {'conductivity': 6.0, 'x': 757.5, 'y': 839.5}),
('83', {'conductivity': 7.0, 'x': 432.5, 'y': 1247.0}),
('1489', {'conductivity': 5.0, 'x': 345.5, 'y': 784.5}),
('855', {'conductivity': 7.0, 'x': 617.75, 'y': 1235.75}),
('44', {'conductivity': 7.0, 'x': 391.0, 'y': 1194.5}),
('5671', {'conductivity': 7.0, 'x': 1203.5, 'y': 466.5}),
('4081', {'conductivity': 8.0, 'x': 1136.19995117, 'y': 1015.40002441}),
('2403', {'conductivity': 6.0, 'x': 735.5, 'y': 676.0}),
('2724', {'conductivity': 7.0, 'x': 690.5, 'y': 262.0}),
('5682', {'conductivity': 7.0, 'x': 1213.0, 'y': 564.5}),
('3376', {'conductivity': 6.0, 'x': 922.0, 'y': 1068.5}),
('5674', {'conductivity': 8.0, 'x': 1213.5, 'y': 572.25}),
('1850', {'conductivity': 6.0, 'x': 386.5, 'y': 457.0}),
('1571', {'conductivity': 5.0, 'x': 313.5, 'y': 641.0}),
('4849', {'conductivity': 6.0, 'x': 814.0, 'y': 547.5}),
('2192', {'conductivity': 12.0, 'x': 536.75, 'y': 637.25}),
('5592', {'conductivity': 7.0, 'x': 1227.0, 'y': 655.5}),
('5437', {'conductivity': 7.0, 'x': 995.0, 'y': 435.0}),
('5476', {'conductivity': 6.0, 'x': 973.0, 'y': 252.5}),
('5274', {'conductivity': 5.0, 'x': 1151.0, 'y': 822.0}),
('2267', {'conductivity': 8.0, 'x': 655.0, 'y': 773.0}),
('5127', {'conductivity': 6.0, 'x': 981.0, 'y': 763.5}),
('1308', {'conductivity': 7.0, 'x': 747.0, 'y': 944.5}),
('590', {'conductivity': 7.0, 'x': 449.0, 'y': 970.5}),
('2053', {'conductivity': 7.0, 'x': 491.5, 'y': 497.5}),
('4219', {'conductivity': 6.0, 'x': 1212.5, 'y': 983.5}),
('846', {'conductivity': 7.0, 'x': 589.5, 'y': 1217.0}),
('1141', {'conductivity': 7.0, 'x': 604.5, 'y': 854.5}),
('2584', {'conductivity': 7.0, 'x': 585.5, 'y': 328.5}),
('3009', {'conductivity': 6.0, 'x': 963.0, 'y': 1349.0}),
('716', {'conductivity': 7.0, 'x': 538.0, 'y': 1329.25}),
('4438', {'conductivity': 5.0, 'x': 804.5, 'y': 632.0}),
('5148', {'conductivity': 8.0, 'x': 1087.59997559, 'y': 827.5}),
('4103', {'conductivity': 6.0, 'x': 1126.5, 'y': 1016.0}),
('3318', {'conductivity': 6.0, 'x': 838.0, 'y': 938.5}),
('3366', {'conductivity': 6.0, 'x': 907.5, 'y': 1063.0}),
('3187', {'conductivity': 6.0, 'x': 823.0, 'y': 1064.5}),
('4617', {'conductivity': 6.0, 'x': 895.0, 'y': 692.0}),
('2347', {'conductivity': 7.0, 'x': 625.0, 'y': 700.0}),
('3631', {'conductivity': 10.0, 'x': 996.400024414, 'y': 1133.29998779}),
('5006', {'conductivity': 6.0, 'x': 945.0, 'y': 894.5}),
('538', {'conductivity': 7.0, 'x': 413.0, 'y': 1018.0}),
('5665', {'conductivity': 7.0, 'x': 1196.0, 'y': 459.5}),
('2489', {'conductivity': 7.0, 'x': 590.5, 'y': 565.0}),
('2238', {'conductivity': 7.0, 'x': 616.0, 'y': 633.0}),
('2078', {'conductivity': 11.0, 'x': 502.100006104, 'y': 333.849975586}),
('5313', {'conductivity': 7.0, 'x': 1273.0, 'y': 798.5}),
('3030', {'conductivity': 7.0, 'x': 984.5, 'y': 1278.5}),
('1284', {'conductivity': 6.0, 'x': 717.5, 'y': 983.0}),
('5648', {'conductivity': 7.0, 'x': 1223.0, 'y': 598.0}),
('1368', {'conductivity': 8.0, 'x': 724.5, 'y': 851.0}),
('3282', {'conductivity': 7.0, 'x': 796.0, 'y': 981.0}),
('4360', {'conductivity': 4.0, 'x': 759.5, 'y': 729.5}),
('3837', {'conductivity': 6.0, 'x': 1180.5, 'y': 1167.5}),
('5169', {'conductivity': 3.0, 'x': 1062.0, 'y': 820.0}),
('4672', {'conductivity': 7.0, 'x': 805.5, 'y': 584.0}),
('342', {'conductivity': 7.0, 'x': 495.0, 'y': 1045.0}),
('436', {'conductivity': 7.0, 'x': 258.0, 'y': 892.0}),
('4317', {'conductivity': 7.0, 'x': 795.0, 'y': 776.5}),
('3511', {'conductivity': 6.0, 'x': 974.0, 'y': 931.5}),
('2438', {'conductivity': 9.0, 'x': 535.5, 'y': 586.75}),
('5246', {'conductivity': 6.0, 'x': 1241.5, 'y': 882.5}),
('2846', {'conductivity': 5.0, 'x': 848.5, 'y': 1324.5}),
('5020', {'conductivity': 7.0, 'x': 927.0, 'y': 860.0}),
('1670', {'conductivity': 8.0, 'x': 419.700012207, 'y': 628.599975586}),
('957', {'conductivity': 6.0, 'x': 664.5, 'y': 1257.5}),
('3220', {'conductivity': 9.0, 'x': 851.799987793, 'y': 1037.40002441}),
('3788', {'conductivity': 9.0, 'x': 1106.40002441, 'y': 1167.29998779}),
('3736', {'conductivity': 7.0, 'x': 1079.0, 'y': 1268.0}),
('3059', {'conductivity': 7.0, 'x': 950.5, 'y': 1242.5}),
('1705', {'conductivity': 7.0, 'x': 446.0, 'y': 646.5}),
('3193', {'conductivity': 8.0, 'x': 817.75, 'y': 1042.0}),
('1392', {'conductivity': 6.0, 'x': 726.5, 'y': 801.5}),
('684', {'conductivity': 7.0, 'x': 422.5, 'y': 881.5}),
('5214', {'conductivity': 4.0, 'x': 1141.5, 'y': 863.5}),
('3157', {'conductivity': 6.0, 'x': 799.5, 'y': 1063.0}),
('1692', {'conductivity': 7.0, 'x': 430.0, 'y': 611.5}),
('2756', {'conductivity': 7.0, 'x': 707.0, 'y': 257.0}),
('3828', {'conductivity': 6.0, 'x': 1142.0, 'y': 1174.0}),
('1757', {'conductivity': 7.0, 'x': 312.0, 'y': 576.0}),
('260', {'conductivity': 5.0, 'x': 437.0, 'y': 1140.5}),
('403', {'conductivity': 7.0, 'x': 301.0, 'y': 1019.0}),
('4566', {'conductivity': 7.0, 'x': 853.0, 'y': 700.0}),
('1309', {'conductivity': 8.0, 'x': 732.0, 'y': 908.0}),
('2221', {'conductivity': 7.0, 'x': 610.5, 'y': 693.5}),
('999', {'conductivity': 6.0, 'x': 730.0, 'y': 1280.0}),
('4929', {'conductivity': 6.0, 'x': 840.0, 'y': 309.0}),
('2851', {'conductivity': 7.0, 'x': 848.5, 'y': 1297.75}),
('1362', {'conductivity': 9.0, 'x': 711.0, 'y': 891.0}),
('5260', {'conductivity': 7.0, 'x': 1251.0, 'y': 845.5}),
('5257', {'conductivity': 7.0, 'x': 1246.5, 'y': 867.0}),
('1172', {'conductivity': 5.0, 'x': 632.5, 'y': 876.5}),
('3648', {'conductivity': 7.0, 'x': 992.0, 'y': 1225.0}),
('3680', {'conductivity': 9.0, 'x': 1040.59997559, 'y': 1132.09997559}),
('2865', {'conductivity': 7.0, 'x': 931.0, 'y': 1293.0}),
('1076', {'conductivity': 7.0, 'x': 561.0, 'y': 1128.0}),
('1233', {'conductivity': 6.0, 'x': 694.0, 'y': 949.0}),
('881', {'conductivity': 6.0, 'x': 669.5, 'y': 1382.0}),
('3408', {'conductivity': 6.0, 'x': 932.0, 'y': 1021.5}),
('504', {'conductivity': 5.0, 'x': 307.5, 'y': 864.5}),
('5460', {'conductivity': 6.0, 'x': 1029.5, 'y': 381.0}),
('136', {'conductivity': 5.0, 'x': 363.5, 'y': 1086.0}),
('4633', {'conductivity': 6.0, 'x': 774.0, 'y': 612.5}),
('463', {'conductivity': 7.0, 'x': 252.600006104, 'y': 864.200012207}),
('5266', {'conductivity': 7.0, 'x': 1246.5, 'y': 863.5}),
('4189', {'conductivity': 4.0, 'x': 1165.5, 'y': 918.5}),
('167', {'conductivity': 6.0, 'x': 352.5, 'y': 1132.5}),
('4956', {'conductivity': 6.0, 'x': 843.0, 'y': 474.0}),
('1538', {'conductivity': 5.0, 'x': 336.0, 'y': 659.5}),
('3745', {'conductivity': 6.0, 'x': 1114.0, 'y': 1347.0}),
('4122', {'conductivity': 6.0, 'x': 1217.0, 'y': 1057.0}),
('4896', {'conductivity': 9.0, 'x': 831.0, 'y': 369.099975586}),
('2601', {'conductivity': 7.0, 'x': 610.0, 'y': 585.0}),
('4211', {'conductivity': 7.0, 'x': 1218.0, 'y': 976.5}),
('4525', {'conductivity': 6.0, 'x': 915.5, 'y': 767.0}),
('2770', {'conductivity': 6.0, 'x': 707.5, 'y': 284.5}),
('4593', {'conductivity': 6.0, 'x': 911.5, 'y': 758.5}),
('4407', {'conductivity': 5.0, 'x': 802.0, 'y': 740.5}),
('3565', {'conductivity': 5.0, 'x': 1021.5, 'y': 1302.0}),
('1742', {'conductivity': 11.0, 'x': 476.100006104, 'y': 596.599975586}),
('1217', {'conductivity': 6.0, 'x': 666.5, 'y': 1194.0}),
('4022', {'conductivity': 9.0, 'x': 1066.40002441, 'y': 955.599975586}),
('2030', {'conductivity': 6.0, 'x': 472.5, 'y': 350.5}),
('1967', {'conductivity': 10.0, 'x': 518.599975586, 'y': 542.5}),
('3699', {'conductivity': 5.0, 'x': 1039.5, 'y': 1118.5}),
('2065', {'conductivity': 6.0, 'x': 487.5, 'y': 338.0}),
('3818', {'conductivity': 6.0, 'x': 1120.0, 'y': 1163.5}),
('2346', {'conductivity': 7.0, 'x': 634.0, 'y': 703.5}),
('2464', {'conductivity': 7.0, 'x': 557.5, 'y': 546.0}),
('1063', {'conductivity': 6.0, 'x': 530.5, 'y': 1090.5}),
('2036', {'conductivity': 6.0, 'x': 463.0, 'y': 359.0}),
('686', {'conductivity': 7.0, 'x': 419.0, 'y': 868.0}),
('3959', {'conductivity': 6.0, 'x': 1071.0, 'y': 993.5}),
('4102', {'conductivity': 6.0, 'x': 1156.5, 'y': 1024.0}),
('3610', {'conductivity': 8.0, 'x': 1002.25, 'y': 1215.25}),
('305', {'conductivity': 6.0, 'x': 487.200012207, 'y': 1119.79998779}),
('3020', {'conductivity': 7.0, 'x': 969.5, 'y': 1402.0}),
('2274', {'conductivity': 8.0, 'x': 619.5, 'y': 756.0}),
('3715', {'conductivity': 7.0, 'x': 1080.0, 'y': 1364.5}),
('3663', {'conductivity': 9.0, 'x': 1050.5, 'y': 1237.25}),
('356', {'conductivity': 7.0, 'x': 277.25, 'y': 963.75}),
('3899', {'conductivity': 5.0, 'x': 998.5, 'y': 1020.5}),
('4411', {'conductivity': 5.0, 'x': 796.0, 'y': 700.5}),
('990', {'conductivity': 7.0, 'x': 696.0, 'y': 1205.0}),
('709', {'conductivity': 6.0, 'x': 566.0, 'y': 1343.0}),
('975', {'conductivity': 7.0, 'x': 649.0, 'y': 1250.0}),
('5658', {'conductivity': 9.0, 'x': 1230.90002441, 'y': 605.199951172}),
('2840', {'conductivity': 4.0, 'x': 851.5, 'y': 1333.5}),
('3049', {'conductivity': 6.0, 'x': 947.5, 'y': 1174.5}),
('4700', {'conductivity': 6.0, 'x': 797.5, 'y': 484.0}),
('1130', {'conductivity': 6.0, 'x': 588.0, 'y': 846.5}),
('1557', {'conductivity': 6.0, 'x': 295.0, 'y': 615.5}),
('1376', {'conductivity': 11.0, 'x': 745.099975586, 'y': 854.599975586}),
('1337', {'conductivity': 7.0, 'x': 701.0, 'y': 855.0}),
('1980', {'conductivity': 9.0, 'x': 491.5, 'y': 520.5}),
('3878', {'conductivity': 6.0, 'x': 1019.0, 'y': 1095.5}),
('3214', {'conductivity': 7.0, 'x': 845.599975586, 'y': 1009.20001221}),
('2764', {'conductivity': 9.0, 'x': 715.0, 'y': 257.0}),
('1179', {'conductivity': 6.0, 'x': 653.5, 'y': 912.0}),
('1199', {'conductivity': 6.0, 'x': 627.0, 'y': 857.0}),
('2227', {'conductivity': 8.0, 'x': 571.0, 'y': 691.5}),
('1743', {'conductivity': 6.0, 'x': 455.5, 'y': 620.5}),
('4514', {'conductivity': 6.0, 'x': 885.0, 'y': 805.5}),
('3772', {'conductivity': 7.0, 'x': 1096.0, 'y': 1357.5}),
('2923', {'conductivity': 6.0, 'x': 916.5, 'y': 1144.5}),
('987', {'conductivity': 7.0, 'x': 681.5, 'y': 1200.0}),
('3993', {'conductivity': 7.0, 'x': 1001.0, 'y': 956.0}),
('4384', {'conductivity': 5.0, 'x': 772.5, 'y': 664.0}),
('3135', {'conductivity': 6.0, 'x': 984.5, 'y': 1230.5}),
('2256', {'conductivity': 8.0, 'x': 632.5, 'y': 787.5}),
('2469', {'conductivity': 7.0, 'x': 555.0, 'y': 501.5}),
('4231', {'conductivity': 7.0, 'x': 1227.5, 'y': 945.0}),
('1334', {'conductivity': 7.0, 'x': 708.0, 'y': 883.5}),
('5197', {'conductivity': 5.0, 'x': 1125.0, 'y': 897.0}),
('415', {'conductivity': 5.0, 'x': 307.5, 'y': 959.5}),
('5094', {'conductivity': 6.0, 'x': 959.0, 'y': 849.5}),
('5628', {'conductivity': 6.0, 'x': 1188.0, 'y': 609.5}),
('2101', {'conductivity': 7.0, 'x': 551.0, 'y': 767.0}),
('2492', {'conductivity': 7.0, 'x': 560.5, 'y': 547.5}),
('1993', {'conductivity': 8.0, 'x': 512.0, 'y': 545.25}),
('2631', {'conductivity': 8.0, 'x': 695.0, 'y': 367.75}),
('2566', {'conductivity': 7.0, 'x': 599.0, 'y': 413.5}),
('1321', {'conductivity': 8.0, 'x': 695.25, 'y': 865.75}),
('4723', {'conductivity': 7.0, 'x': 753.5, 'y': 409.5}),
('429', {'conductivity': 6.0, 'x': 297.0, 'y': 1013.0}),
('5522', {'conductivity': 7.0, 'x': 1044.0, 'y': 321.5}),
('1517', {'conductivity': 8.0, 'x': 291.200012207, 'y': 626.5}),
('4868', {'conductivity': 6.0, 'x': 873.0, 'y': 533.5}),
('1453', {'conductivity': 5.0, 'x': 271.0, 'y': 743.5}),
('1915', {'conductivity': 7.0, 'x': 442.0, 'y': 591.5}),
('4621', {'conductivity': 6.0, 'x': 893.5, 'y': 901.0}),
('173', {'conductivity': 7.0, 'x': 461.0, 'y': 1273.5}),
('2792', {'conductivity': 5.0, 'x': 766.5, 'y': 1373.0}),
('2814', {'conductivity': 7.0, 'x': 791.0, 'y': 1292.0}),
('1047', {'conductivity': 8.0, 'x': 553.5, 'y': 1191.1000061}),
('3256', {'conductivity': 8.0, 'x': 778.25, 'y': 970.5}),
('2949', {'conductivity': 8.0, 'x': 927.0, 'y': 1088.5}),
('2889', {'conductivity': 7.0, 'x': 775.5, 'y': 1236.0}),
...]
In [27]:
pos = nx.spring_layout(G)
nx.draw_networkx_edges(G,pos,edgecolor="DarkSlateGray",alpha =0.4)
nx.draw_networkx_nodes(G,pos,color="FireBrick",alpha=0.6,node_size=10,linewidths=0.5)
Out[27]:
<matplotlib.collections.PathCollection at 0x7fe7cef926d8>
In [31]:
pos = {}
for k in G.node.keys():
pos[k] = (G.node[k]['x'],G.node[k]['y'])
print(pos)
{'3325': (820.5, 919.5), '342': (495.0, 1045.0), '3030': (984.5, 1278.5), '1195': (623.0, 829.0), '2427': (707.5, 790.0), '4407': (802.0, 740.5), '5564': (1208.5, 617.0), '629': (358.5, 794.0), '3388': (960.5, 1071.0), '5349': (1303.5, 723.0), '4655': (784.0, 523.5), '382': (270.0, 943.0), '2318': (712.5, 771.5), '5148': (1087.59997559, 827.5), '3550': (1000.0, 1281.0), '2272': (683.0, 778.5), '4672': (805.5, 584.0), '456': (267.5, 847.5), '4081': (1136.19995117, 1015.40002441), '4036': (1053.0, 933.5), '2747': (702.0, 305.5), '4189': (1165.5, 918.5), '462': (254.0, 824.5), '5235': (1181.0, 893.5), '4144': (1214.0, 1012.0), '5180': (1108.5, 884.5), '597': (454.0, 980.5), '1710': (486.5, 667.0), '2772': (763.5, 1396.3999939), '4449': (856.5, 838.0), '4755': (788.0, 314.0), '3244': (767.5, 972.0), '593': (460.5, 989.5), '5604': (1246.5, 681.0), '4098': (1148.0, 1021.5), '2653': (727.0, 595.0), '3987': (1008.0, 963.0), '4918': (812.0, 296.5), '294': (463.0, 1080.0), '2411': (702.0, 621.0), '4960': (847.0, 388.0), '1450': (265.0, 702.5), '383': (272.5, 952.5), '1016': (702.5, 1207.0), '3118': (960.0, 1115.0), '4721': (759.0, 365.5), '5367': (959.0, 705.5), '3423': (917.0, 1015.0), '1666': (412.0, 646.5), '3010': (974.5, 1400.25), '5559': (1230.30004883, 624.300048828), '1558': (301.5, 599.5), '4243': (1172.0, 1114.0), '3145': (791.0, 1056.5), '1697': (404.0, 612.5), '3441': (887.5, 994.5), '3367': (898.0, 1060.5), '3504': (957.0, 911.5), '763': (594.5, 1355.0), '1999': (439.5, 388.0), '2447': (546.0, 592.0), '4700': (797.5, 484.0), '5463': (1024.5, 425.0), '5313': (1273.0, 798.5), '3856': (1169.0, 1118.5), '3689': (1038.5, 1175.0), '426': (336.0, 955.0), '5240': (1236.0, 899.5), '4181': (1148.5, 915.5), '173': (461.0, 1273.5), '1217': (666.5, 1194.0), '1993': (512.0, 545.25), '924': (705.0, 1392.0), '567': (472.5, 1009.5), '1744': (481.0, 640.5), '1705': (446.0, 646.5), '4591': (914.0, 748.0), '4103': (1126.5, 1016.0), '3753': (1120.5, 1343.0), '5324': (1278.0, 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In [32]:
import matplotlib.pyplot as plt
In [33]:
fig = plt.figure()
ax = fig.add_subplot(1,1,1)
ax.set_aspect('equal')
nx.draw_networkx_edges(G,pos,edgecolor="DarkSlateGray",alpha=0.4)
nx.draw_networkx_nodes(G,pos,color="FireBrick",alpha=0.6,node_size=10,linewidths=0.5)
Out[33]:
<matplotlib.collections.PathCollection at 0x7fe7ced16c88>
In [ ]:
Content source: debsankha/network_course_python
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