Method to try to match lines, mainly in absorption, with known lines at different velocities. The lineid must be identified first to discard wrong detections.
In [1]:
import sys
sys.path.append("/home/stephane/git/alma-calibrator/src")
import lineTools as lt
import pickle
import matplotlib.pyplot as pl
al = lt.analysisLines("/home/stephane/Science/RadioGalaxy/ALMA/absorptions/analysis/a/lineAll.db")
In [2]:
%matplotlib inline
We define the source to be scanned from the lineAll.db
In [3]:
def outputMatch(matches, minmatch = 5):
for m in matches:
imax = len(m)
ifound = 0
vel = m[0]
for i in range(1,len(m)):
if len(m[i]) > 0:
ifound += 1
if ifound >= minmatch:
print("########################")
print("## velocity: %f"%(vel))
print("## Freq. matched: %d"%(ifound))
print("##")
print("## Formula Name E_K Frequency")
print("## (K) (MHz)")
for i in range(1,len(m)):
if len(m[i]) > 0:
print("## Line:")
for line in m[i]:
print line
print("## \n###END###\n")
In [4]:
source = "J004916-445738"
redshift = 0.1213
lineid = [9520, 9527, 9532, 9534, 9535, 9542, 9545]
Scan through the lines (lineid) matching with a local splatalogue.db. emax is the maximum energy of the upper level to restrain to low energy transitions...
In [5]:
m = al.scanningSplatVelocitySourceLineid(lineid, velmin = -200. , velmax = 200, dv = 0.5 ,nrao = True, emax= 30., absorption = True, emission = True )
## Number of lines: 7
## Galactic scanning ...
## Connect to local splatalogue ...
## Velocity: -200.00000 (0.0% done)
### Lines found: 0
## Velocity: -199.50000 (0.1% done)
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## Velocity: -199.00000 (0.2% done)
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## Velocity: 127.50000 (81.9% done)
### Lines found: 0
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### Lines found: 1
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### Lines found: 0
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### Lines found: 0
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### Lines found: 0
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### Lines found: 0
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### Lines found: 0
## Velocity: 199.50000 (99.9% done)
### Lines found: 0
In [6]:
vel = []
lineDetected =[]
minmatch = 2
for l in m:
vel.append(l[0])
ifound = 0
for i in range(1,len(l)):
if len(l[i]) > 0:
ifound += 1
if ifound >= minmatch:
print("### Velocity: %f"%(l[0]))
print("##")
for line in l[1:-1]:
if len(line) > 0:
print line
print("\n\n")
lineDetected.append(ifound)
### Velocity: -24.000000
##
[(u'c-C3H', u'Cyclopropenylidyne', u' 3( 3, 1)- 3( 1, 2), J=5/2-7/2, F= 3- 3', 20.2069497099464, 110845.6673, 715)]
[(u'OCS v=0', u'Carbonyl Sulfide', u' 7 - 6', 16.3443182012578, 85139.104, 317)]
### Velocity: -15.000000
##
[(u'c-C3H', u'Cyclopropenylidyne', u' 3( 3, 1)- 3( 1, 2), J=5/2-7/2, F= 2- 3', 20.2067936346538, 110842.4152, 715)]
[(u'CH3SH v=0', u'Methyl Mercaptan', u' 2( 1) <sup>- </sup> - 2( 0) <sup>+</sup>A ', 8.75384467627945, 106524.098, 841)]
### Velocity: 177.500000
##
[(u'gGa-(CH2OH)2', u'Ethylene Glycol', u' 4( 4, 1) v= 1 - 3( 3, 0) v= 1', 13.1122944517761, 112645.6073, 121)]
[(u'c-H2C3O', u'Cyclopropenone', u' 6( 3, 3)- 5( 3, 2)', 25.0523087775789, 85081.8754, 136)]
Plot the detected lines vs. the velocity
In [7]:
pl.figure(figsize=(15,10))
pl.xlabel("velocity")
pl.ylabel("Lines")
pl.plot(vel, lineDetected, "k-")
pl.show()
In [8]:
## uncomment to save the data in a pickle file
#f = open("3c273-vel-scan.pickle","w")
#pickle.dump(m,f )
#f.close()
Display the matching transitions
In [9]:
outputMatch(m, minmatch)
########################
## velocity: -24.000000
## Freq. matched: 2
##
## Formula Name E_K Frequency
## (K) (MHz)
## Line:
(u'c-C3H', u'Cyclopropenylidyne', u' 3( 3, 1)- 3( 1, 2), J=5/2-7/2, F= 3- 3', 20.2069497099464, 110845.6673, 715)
## Line:
(u'OCS v=0', u'Carbonyl Sulfide', u' 7 - 6', 16.3443182012578, 85139.104, 317)
##
###END###
########################
## velocity: -15.000000
## Freq. matched: 2
##
## Formula Name E_K Frequency
## (K) (MHz)
## Line:
(u'c-C3H', u'Cyclopropenylidyne', u' 3( 3, 1)- 3( 1, 2), J=5/2-7/2, F= 2- 3', 20.2067936346538, 110842.4152, 715)
## Line:
(u'CH3SH v=0', u'Methyl Mercaptan', u' 2( 1) <sup>- </sup> - 2( 0) <sup>+</sup>A ', 8.75384467627945, 106524.098, 841)
##
###END###
########################
## velocity: 177.500000
## Freq. matched: 2
##
## Formula Name E_K Frequency
## (K) (MHz)
## Line:
(u'gGa-(CH2OH)2', u'Ethylene Glycol', u' 4( 4, 1) v= 1 - 3( 3, 0) v= 1', 13.1122944517761, 112645.6073, 121)
## Line:
(u'c-H2C3O', u'Cyclopropenone', u' 6( 3, 3)- 5( 3, 2)', 25.0523087775789, 85081.8754, 136)
##
###END###
Content source: bosscha/alma-calibrator
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