In [1]:
Pkg.update()
pkgInstalled = Pkg.installed()
if !haskey(pkgInstalled, "Plots")
Pkg.add("Plots")
end
if !haskey(pkgInstalled, "PlotsJS")
Pkg.add("PlotlyJS")
end
if !haskey(pkgInstalled, "Interact")
Pkg.add("Interact")
Pkg.checkout("Interact")
end
if !haskey(pkgInstalled, "SeaMass")
ENV["PYTHON"]=""
Pkg.clone("https://github.com/biospi/SeaMass.jl")
end
INFO: Updating METADATA...
INFO: Computing changes...
INFO: No packages to install, update or remove
INFO: Cloning cache of ColorTypes from https://github.com/JuliaGraphics/ColorTypes.jl.git
INFO: Cloning cache of Colors from https://github.com/JuliaGraphics/Colors.jl.git
INFO: Cloning cache of FixedPointNumbers from https://github.com/JuliaMath/FixedPointNumbers.jl.git
INFO: Cloning cache of FixedSizeArrays from https://github.com/SimonDanisch/FixedSizeArrays.jl.git
INFO: Cloning cache of Iterators from https://github.com/JuliaLang/Iterators.jl.git
INFO: Cloning cache of Measures from https://github.com/dcjones/Measures.jl.git
INFO: Cloning cache of PlotUtils from https://github.com/JuliaPlots/PlotUtils.jl.git
INFO: Cloning cache of Plots from https://github.com/tbreloff/Plots.jl.git
INFO: Cloning cache of RecipesBase from https://github.com/JuliaPlots/RecipesBase.jl.git
INFO: Cloning cache of Reexport from https://github.com/simonster/Reexport.jl.git
INFO: Cloning cache of Showoff from https://github.com/JuliaGraphics/Showoff.jl.git
INFO: Installing ColorTypes v0.2.11
INFO: Installing Colors v0.6.9
INFO: Installing FixedPointNumbers v0.2.1
INFO: Installing FixedSizeArrays v0.2.4
INFO: Installing Iterators v0.2.0
INFO: Installing Measures v0.0.3
INFO: Installing PlotUtils v0.1.1
INFO: Installing Plots v0.9.4
INFO: Installing RecipesBase v0.1.0
INFO: Installing Reexport v0.0.3
INFO: Installing Showoff v0.0.7
INFO: Building Plots
INFO: Cannot find deps/plotly-latest.min.js... downloading latest version.
% Total % Received % Xferd Average Speed Time Time Time Current
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INFO: Package database updated
INFO: Cloning cache of Blink from https://github.com/JunoLab/Blink.jl.git
INFO: Cloning cache of Codecs from https://github.com/dcjones/Codecs.jl.git
INFO: Cloning cache of DocStringExtensions from https://github.com/JuliaDocs/DocStringExtensions.jl.git
INFO: Cloning cache of Hiccup from https://github.com/JunoLab/Hiccup.jl.git
INFO: Cloning cache of HttpCommon from https://github.com/JuliaWeb/HttpCommon.jl.git
INFO: Cloning cache of HttpParser from https://github.com/JuliaWeb/HttpParser.jl.git
INFO: Cloning cache of HttpServer from https://github.com/JuliaWeb/HttpServer.jl.git
INFO: Cloning cache of Juno from https://github.com/JunoLab/Juno.jl.git
INFO: Cloning cache of LaTeXStrings from https://github.com/stevengj/LaTeXStrings.jl.git
INFO: Cloning cache of Lazy from https://github.com/MikeInnes/Lazy.jl.git
INFO: Cloning cache of MacroTools from https://github.com/MikeInnes/MacroTools.jl.git
INFO: Cloning cache of MbedTLS from https://github.com/JuliaWeb/MbedTLS.jl.git
INFO: Cloning cache of Media from https://github.com/JunoLab/Media.jl.git
INFO: Cloning cache of Mustache from https://github.com/jverzani/Mustache.jl.git
INFO: Cloning cache of Mux from https://github.com/JuliaWeb/Mux.jl.git
INFO: Cloning cache of PlotlyJS from https://github.com/spencerlyon2/PlotlyJS.jl.git
INFO: Cloning cache of WebSockets from https://github.com/JuliaWeb/WebSockets.jl.git
INFO: Installing Blink v0.4.3
INFO: Installing Codecs v0.2.0
INFO: Installing DocStringExtensions v0.2.1
INFO: Installing Hiccup v0.0.3
INFO: Installing HttpCommon v0.2.6
INFO: Installing HttpParser v0.2.0
INFO: Installing HttpServer v0.1.7
INFO: Installing Juno v0.2.3
INFO: Installing LaTeXStrings v0.2.0
INFO: Installing Lazy v0.11.4
INFO: Installing MacroTools v0.3.2
INFO: Installing MbedTLS v0.3.0
INFO: Installing Media v0.2.3
INFO: Installing Mustache v0.1.2
INFO: Installing Mux v0.2.2
INFO: Installing PlotlyJS v0.5.0
INFO: Installing WebSockets v0.2.1
INFO: Building HttpParser
INFO: Attempting to Create directory /Users/awd/.julia/v0.5/HttpParser/deps/downloads
INFO: Attempting to Create directory /Users/awd/.julia/v0.5/HttpParser/deps/downloads
INFO: Directory /Users/awd/.julia/v0.5/HttpParser/deps/downloads already created
INFO: Downloading file https://github.com/nodejs/http-parser/archive/v2.7.1.zip
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100 123 0 123 0 0 161 0 --:--:-- --:--:-- --:--:-- 161
100 55365 100 55365 0 0 31213 0 0:00:01 0:00:01 --:--:-- 134k
Archive: /Users/awd/.julia/v0.5/HttpParser/deps/downloads/v2.7.1.zip
feae95a3a69f111bc1897b9048d9acbc290992f9
creating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/.gitignore
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/.mailmap
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/.travis.yml
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/AUTHORS
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/LICENSE-MIT
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/Makefile
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/README.md
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/bench.c
creating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/contrib/
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/contrib/parsertrace.c
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/contrib/url_parser.c
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/http_parser.c
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/http_parser.gyp
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/http_parser.h
inflating: /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1/test.c
cc -I. -DHTTP_PARSER_STRICT=0 -Wall -Wextra -Werror -O3 -fPIC -c http_parser.c -o libhttp_parser.o
INFO: Done downloading file https://github.com/nodejs/http-parser/archive/v2.7.1.zip
INFO: Attempting to Create directory /Users/awd/.julia/v0.5/HttpParser/deps
INFO: Directory /Users/awd/.julia/v0.5/HttpParser/deps already created
INFO: Attempting to Create directory /Users/awd/.julia/v0.5/HttpParser/deps/usr/lib
INFO: Changing Directory to /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1
INFO: Changing Directory to /Users/awd/.julia/v0.5/HttpParser/deps/src/http-parser-2.7.1
INFO: Changing Directory to /Users/awd/.julia/v0.5/HttpParser/deps/src
INFO: Attempting to Create directory /Users/awd/.julia/v0.5/HttpParser/deps/usr/lib
INFO: Directory /Users/awd/.julia/v0.5/HttpParser/deps/usr/lib already created
INFO: Changing Directory to /Users/awd/.julia/v0.5/HttpParser/deps/src
cc -shared -o libhttp_parser.dylib libhttp_parser.o
INFO: Changing Directory to /Users/awd/.julia/v0.5/HttpParser/deps/src
INFO: Building Homebrew
Updated 1 tap (homebrew/core).
==> Updated Formulae
apache-flink
aws-sdk-cpp
bsdconv
certbot
cppcheck
cromwell
kerl
libxmp
node
progress
vultr
INFO: Building MbedTLS
WARNING: The following packages do not have relocatable bottles, installation may fail!
Please report these packages to https://github.com/JuliaLang/Homebrew.jl:
staticfloat/juliadeps/mbedtls
==> Installing mbedtls from staticfloat/juliadeps
==> Installing dependencies for staticfloat/juliadeps/mbedtls: cmake
==> Installing staticfloat/juliadeps/mbedtls dependency: cmake
==> Downloading https://homebrew.bintray.com/bottles/cmake-3.6.2.sierra.bottle.tar.gz
==> Pouring cmake-3.6.2.sierra.bottle.tar.gz
==> Caveats
Emacs Lisp files have been installed to:
/Users/awd/.julia/v0.5/Homebrew/deps/usr/share/emacs/site-lisp/cmake
==> Summary
🍺 /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/cmake/3.6.2: 2,028 files, 27.8M
==> Installing staticfloat/juliadeps/mbedtls
==> Downloading https://tls.mbed.org/download/mbedtls-2.3.0-apache.tgz
==> Downloading https://github.com/ARMmbed/mbedtls/commit/7247f99b3e068a2b90b7776a2cdd438fddb7a38b.patch
==> Downloading https://github.com/ARMmbed/mbedtls/commit/b5b6af2663fdb7f57c30494607bade90810f6844.patch
==> Downloading https://github.com/ARMmbed/mbedtls/commit/b92834324f29768a5bf39c58c674c5f3c09b6763.patch
==> Downloading https://github.com/ARMmbed/mbedtls/commit/23e9778684ba734dbfba1445e145b04dd6b59e76.patch
==> Patching
==> Applying 7247f99b3e068a2b90b7776a2cdd438fddb7a38b.patch
patching file include/mbedtls/ssl.h
==> Applying b5b6af2663fdb7f57c30494607bade90810f6844.patch
patching file include/mbedtls/platform.h
patching file include/mbedtls/platform_time.h
patching file include/mbedtls/ssl.h
patching file library/net.c
patching file library/ssl_cache.c
patching file library/ssl_ciphersuites.c
patching file library/ssl_cli.c
patching file library/ssl_cookie.c
patching file library/ssl_srv.c
patching file library/ssl_ticket.c
patching file library/ssl_tls.c
patching file library/x509.c
patching file programs/ssl/dtls_client.c
==> Applying b92834324f29768a5bf39c58c674c5f3c09b6763.patch
patching file tests/scripts/all.sh
==> Applying 23e9778684ba734dbfba1445e145b04dd6b59e76.patch
patching file library/platform.c
==> cmake -DUSE_SHARED_MBEDTLS_LIBRARY=On . -DCMAKE_C_FLAGS_RELEASE=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG -DCMAKE_INSTALL_PREFIX=/Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/mbedtls/2.3.0_3 -DCMAKE_BUILD_TYPE=Release -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev
==> make
==> make install
🍺 /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/mbedtls/2.3.0_3: 125 files, 2.8M, built in 32 seconds
Warning: Already linked: /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/mbedtls/2.3.0_3
INFO: Package database updated
INFO: Cloning cache of DataStructures from https://github.com/JuliaLang/DataStructures.jl.git
INFO: Cloning cache of Interact from https://github.com/JuliaLang/Interact.jl.git
INFO: Cloning cache of Reactive from https://github.com/JuliaLang/Reactive.jl.git
INFO: Installing DataStructures v0.4.6
INFO: Installing Interact v0.3.5
INFO: Installing Reactive v0.3.6
INFO: Building Interact
INFO: Enabling widgetsnbextension
Enabling notebook extension jupyter-js-widgets/extension...
- Validating: OK
INFO: ipywidgets version found: 5.2.2
INFO: A compatible version of ipywidgets was found. All good.
INFO: Package database updated
INFO: Checking out Interact master...
INFO: Pulling Interact latest master...
INFO: No packages to install, update or remove
INFO: Cloning SeaMass from https://github.com/biospi/SeaMass.jl
INFO: Computing changes...
INFO: Cloning cache of Blosc from https://github.com/stevengj/Blosc.jl.git
INFO: Cloning cache of HDF5 from https://github.com/JuliaIO/HDF5.jl.git
INFO: Cloning cache of LibExpat from https://github.com/amitmurthy/LibExpat.jl.git
INFO: Cloning cache of PyCall from https://github.com/JuliaPy/PyCall.jl.git
INFO: Installing Blosc v0.1.7
INFO: Installing HDF5 v0.6.6
INFO: Installing LibExpat v0.2.1
INFO: Installing PyCall v1.7.2
INFO: Building Blosc
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 63144 100 63144 0 0 59565 0 0:00:01 0:00:01 --:--:-- 59565
INFO: Building Homebrew
Already up-to-date.
INFO: Building HDF5
==> Tapping homebrew/science
Cloning into '/Users/awd/.julia/v0.5/Homebrew/deps/usr/Library/Taps/homebrew/homebrew-science'...
Tapped 629 formulae (662 files, 8.5M)
WARNING: The following packages do not have relocatable bottles, installation may fail!
Please report these packages to https://github.com/JuliaLang/Homebrew.jl:
homebrew/science/hdf5
==> Installing szip from staticfloat/juliatranslated
==> Downloading https://homebrew.bintray.com/bottles/szip-2.1.sierra.bottle.1.tar.gz
==> Pouring szip-2.1.sierra.bottle.1.tar.gz
🍺 /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/szip/2.1: 11 files, 107.6K
Warning: Already linked: /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/szip/2.1
==> Installing hdf5 from homebrew/science
==> Installing dependencies for homebrew/science/hdf5: autoconf, automake, libtool
==> Installing homebrew/science/hdf5 dependency: autoconf
==> Downloading https://homebrew.bintray.com/bottles/autoconf-2.69.sierra.bottle.4.tar.gz
==> Pouring autoconf-2.69.sierra.bottle.4.tar.gz
==> Caveats
Emacs Lisp files have been installed to:
/Users/awd/.julia/v0.5/Homebrew/deps/usr/share/emacs/site-lisp/autoconf
==> Summary
🍺 /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/autoconf/2.69: 70 files, 3.0M
==> Installing homebrew/science/hdf5 dependency: automake
==> Downloading https://homebrew.bintray.com/bottles/automake-1.15.sierra.bottle.2.tar.gz
==> Pouring automake-1.15.sierra.bottle.2.tar.gz
🍺 /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/automake/1.15: 130 files, 2.9M
==> Installing homebrew/science/hdf5 dependency: libtool
==> Downloading https://homebrew.bintray.com/bottles/libtool-2.4.6_1.sierra.bottle.tar.gz
==> Pouring libtool-2.4.6_1.sierra.bottle.tar.gz
==> Caveats
In order to prevent conflicts with Apple's own libtool we have prepended a "g"
so, you have instead: glibtool and glibtoolize.
==> Summary
🍺 /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/libtool/2.4.6_1: 70 files, 3.7M
==> Installing homebrew/science/hdf5
==> Downloading https://support.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.17.tar.bz2
==> autoreconf -fiv
==> ./configure --prefix=/Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/hdf5/1.8.17 --enable-production --enable-debug=no --with-zlib=/usr --with-szlib=/Users/awd/.julia/v0.5/Homebrew/deps/usr/opt/szip --enable-static=yes --enable-shared=yes --enable-cxx --disable-fortran
==> make
==> make install
🍺 /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/hdf5/1.8.17: 181 files, 10.6M, built in 3 minutes 29 seconds
Warning: Already linked: /Users/awd/.julia/v0.5/Homebrew/deps/usr/Cellar/hdf5/1.8.17
INFO: Building PyCall
INFO: No system-wide Python was found; got the following error:
could not spawn `'' -c "import distutils.sysconfig; print(distutils.sysconfig.get_config_var('VERSION'))"`: no such file or directory (ENOENT)
using the Python distribution in the Conda package
Fetching package metadata .......
Solving package specifications: ..........
Package plan for installation in environment /Users/awd/.julia/v0.5/Conda/deps/usr:
The following packages will be downloaded:
package | build
---------------------------|-----------------
mkl-11.3.3 | 0 101.4 MB
numpy-1.11.2 | py27_0 3.1 MB
------------------------------------------------------------
Total: 104.5 MB
The following NEW packages will be INSTALLED:
mkl: 11.3.3-0
numpy: 1.11.2-py27_0
Fetching packages ...
mkl-11.3.3-0.t 100% |###############################| Time: 0:00:20 5.19 MB/s
numpy-1.11.2-p 100% |###############################| Time: 0:00:03 1.03 MB/s
Extracting packages ...
[ COMPLETE ]|##################################################| 100%
Linking packages ...
[ COMPLETE ]|##################################################| 100%
INFO: PyCall is using /Users/awd/.julia/v0.5/Conda/deps/usr/bin/python (Python 2.7.12) at /Users/awd/.julia/v0.5/Conda/deps/usr/bin/python, libpython = /Users/awd/.julia/v0.5/Conda/deps/usr/lib/libpython2.7
In [ ]:
Content source: biospi/seamass
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