Tutorial installation

Please run this notebook to completion to install the latest version of the tutorial notebooks on this Jupyter server.



In [ ]:

    
# setting up a temp directory to checkout the git repository
export TUTORIAL_FOLDER="$HOME/tutorial-$(date +%s)"
echo $TUTORIAL_FOLDER



In [ ]:

    
# check out the git repository
git clone --depth 1 https://github.com/agaveplatform/SC17-container-tutorial.git $TUTORIAL_FOLDER



In [ ]:

    
# the latest notebooks should all be present
ls -l $TUTORIAL_FOLDER/content/notebooks  | grep ".ipynb"



In [ ]:

    
# list current tutorials
cd $HOME
ls -l | grep ".ipynb"



In [ ]:

    
# check that the checkout completed
if [[ -d $TUTORIAL_FOLDER ]]; then 
    # backup current tutorials
    mkdir -p "$HOME/work/tutorial-backup-$(date +%s)"
    cp $HOME/*.ipynb $HOME/work/tutorial-backup-$(date +%s)

    # copy the checkout to the server root
    for file in $TUTORIAL_FOLDER/content/notebooks/*.ipynb
    do
      if [[ $(basename "$file") != "INSTALL.ipynb" ]]
      then
        cp -f "$file" .
      fi
    done
    
    echo "Tutorial notebooks successfully installed. Please go to the http://$VM_HOSTNAME/notebooks/00%20-%20Introduction.ipynb to begin the tutorial."
else
    echo "Tutorial checkout directory is missing. No tutorials will be updated"
fi



In [ ]: