This notebook demonstrates loading and unloading of datasets into the OME Framework

Import the data_loading module from ome.loading along with the datasets module



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from ome.loading import data_loading
from ome.data import *

Also don't forget to create a session for the database



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from ome import base

session = base.Session()



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data_loading.load_extra_analyses









    Out[3]:





<function ome.wrapper>



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Loading groups



In [6]:

    
from ome import util
from ome.components import *

ecoli_k12 = session.query(base.Chromosome).filter(base.Chromosome.ncbi_id == 'NC_000913.2').one()
util.add_gene_group('fermentation_targets', ['adhE','hyfA','pdhR'], ecoli_k12)
util.add_gene_group('aa_biosynth', ['leuA','tyrB','pheA','aroH'], ecoli_k12)



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session.query(GeneGroup).all()









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[Gene Group (#1, fermentation_targets): adhE, hyfA, pdhR,
 Gene Group (#2, aa_biosynth): leuA, tyrB, pheA, aroH]



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gg = session.query(GeneGroup).first()
session.delete(gg)



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session.query(GeneGroup).all()









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[Gene Group (#2, aa_biosynth): leuA, tyrB, pheA, aroH]



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