In [1]:
import os
# Third-party
from astropy.io import ascii, fits
import astropy.coordinates as coord
import astropy.table as at
import astropy.units as u
import matplotlib as mpl
import matplotlib.pyplot as pl
import numpy as np
%matplotlib inline
from gary.units import galactic
import gary.coordinates as gc
from ophiuchus import vcirc, vlsr
import ophiuchus.potential as op
In [2]:
mw_pot = op.load_potential('static_mw')
Melissa's red clump data with ages, Bovy's red clump data with abundances (from APOGEE)
In [3]:
rc_age = ascii.read("/Users/adrian/projects/brucewillis/data/redclump_catalogue_apw.txt")
rc_age.rename_column('name', 'APOGEE_ID')
rc_bovy = at.Table(fits.getdata("/Users/adrian/projects/brucewillis/data/apogee-rc-DR12.fits", 1))
In [4]:
rc = at.join(rc_age, rc_bovy, keys='APOGEE_ID')
len(rc_age), len(rc_bovy), len(rc)
Out[4]:
(17065, 19937, 17065)
In [5]:
print(rc.colnames)
['APOGEE_ID', 'radius', 'z', 'FeH', 'alphaFe', 'age', 'chi2_reduced', 'APSTAR_ID', 'ASPCAP_ID', 'TELESCOPE', 'LOCATION_ID', 'FIELD', 'J', 'J_ERR', 'H', 'H_ERR', 'K', 'K_ERR', 'RA', 'DEC', 'GLON', 'GLAT', 'APOGEE_TARGET1', 'APOGEE_TARGET2', 'TARGFLAGS', 'NVISITS', 'COMMISS', 'SNR', 'STARFLAG', 'STARFLAGS', 'ANDFLAG', 'ANDFLAGS', 'VHELIO_AVG', 'VSCATTER', 'VERR', 'VERR_MED', 'STABLERV_CHI2', 'STABLERV_RCHI2', 'STABLERV_CHI2_PROB', 'EXTRATARG', 'PARAM', 'FPARAM', 'PARAM_COV', 'FPARAM_COV', 'ELEM', 'FELEM', 'ELEM_ERR', 'FELEM_ERR', 'TEFF', 'LOGG', 'PARAM_M_H', 'PARAM_ALPHA_M', 'TEFF_ERR', 'LOGG_ERR', 'PARAM_M_H_ERR', 'PARAM_ALPHA_M_ERR', 'ASPCAP_CHI2', 'ASPCAP_CLASS', 'ASPCAPFLAG', 'ASPCAPFLAGS', 'PARAMFLAG', 'AL_H', 'CA_H', 'C_H', 'FE_H', 'K_H', 'MG_H', 'MN_H', 'NA_H', 'NI_H', 'N_H', 'O_H', 'SI_H', 'S_H', 'TI_H', 'V_H', 'AL_H_ERR', 'CA_H_ERR', 'C_H_ERR', 'FE_H_ERR', 'K_H_ERR', 'MG_H_ERR', 'MN_H_ERR', 'NA_H_ERR', 'NI_H_ERR', 'N_H_ERR', 'O_H_ERR', 'SI_H_ERR', 'S_H_ERR', 'TI_H_ERR', 'V_H_ERR', 'AL_H_FLAG', 'CA_H_FLAG', 'C_H_FLAG', 'FE_H_FLAG', 'K_H_FLAG', 'MG_H_FLAG', 'MN_H_FLAG', 'NA_H_FLAG', 'NI_H_FLAG', 'N_H_FLAG', 'O_H_FLAG', 'SI_H_FLAG', 'S_H_FLAG', 'TI_H_FLAG', 'V_H_FLAG', 'ELEM_CHI2', 'ELEMFLAG', 'WASH_M', 'WASH_M_ERR', 'WASH_T2', 'WASH_T2_ERR', 'DDO51', 'DDO51_ERR', 'IRAC_3_6', 'IRAC_3_6_ERR', 'IRAC_4_5', 'IRAC_4_5_ERR', 'IRAC_5_8', 'IRAC_5_8_ERR', 'IRAC_8_0', 'IRAC_8_0_ERR', 'WISE_4_5', 'WISE_4_5_ERR', 'TARG_4_5', 'TARG_4_5_ERR', 'AK_TARG', 'AK_TARG_METHOD', 'WASH_DDO51_GIANT_FLAG', 'WASH_DDO51_STAR_FLAG', 'ALL_VISITS', 'VISITS', 'ALL_VISIT_PK', 'VISIT_PK', 'J0', 'H0', 'K0', 'METALS', 'ALPHAFE', 'ADDL_LOGG_CUT', 'RC_DIST', 'RC_DM', 'RC_GALR', 'RC_GALPHI', 'RC_GALZ', 'STAT', 'INVSF', 'PMRA', 'PMDEC', 'PMRA_ERR', 'PMDEC_ERR', 'PMMATCH', 'GALVR', 'GALVT', 'GALVZ', 'PMRA_PPMXL', 'PMDEC_PPMXL', 'PMRA_ERR_PPMXL', 'PMDEC_ERR_PPMXL', 'PMMATCH_PPMXL', 'GALVR_PPMXL', 'GALVT_PPMXL', 'GALVZ_PPMXL']
Turn -9999. into NaN's -- curse you SDSS!
In [6]:
for colname in rc.colnames:
if rc[colname].dtype.name not in ['float64', 'float32']:
continue
ix = np.isclose(rc[colname], -9999.)
rc[colname][ix] = np.nan
Proper motions are from UCAC-4 so they suck, distance errors claimed to be 5%
In [71]:
rv_c = coord.ICRS(ra=rc['RA']*u.degree, dec=rc['DEC']*u.degree, distance=rc['RC_DIST']*u.kpc)
distance_err = rc['RC_DIST'] * u.kpc * 0.05
rv = rc['VHELIO_AVG']*u.km/u.s
rv_err = np.sqrt(rc['VERR']**2 + rc['VSCATTER']**2)*u.km/u.s
pm_ra = rc['PMRA']*u.mas/u.yr
pm_ra_err = rc['PMRA_ERR']*u.mas/u.yr
pm_dec = rc['PMDEC']*u.mas/u.yr
pm_dec_err = rc['PMDEC_ERR']*u.mas/u.yr
pm_ra[pm_ra.value < -9999.] = np.nan
pm_dec[pm_dec.value < -9999.] = np.nan
pm_ra_err[pm_ra_err.value < -9999.] = np.nan
pm_dec_err[pm_dec_err.value < -9999.] = np.nan
Convert positions and velocities to Galactocentric quantities
In [8]:
xyz = rv_c.transform_to(coord.Galactocentric).cartesian.xyz
vxyz = gc.vhel_to_gal(rv_c, rv=rv, pm=(pm_ra, pm_dec))
Compute angular momentum, energy (per unit mass)...
In [9]:
L = np.cross(xyz, vxyz, axis=0)
In [10]:
E = mw_pot.total_energy(x=xyz.decompose(galactic).value,
v=vxyz.decompose(galactic).value)
In [102]:
Lxy = np.sqrt(L[0]**2 + L[1]**2)
Lz = L[2]
Ltot = np.sqrt(np.sum(L**2, axis=0))
Estimate radial, azimuthal, vertical frequencies
In [157]:
import gary.dynamics as gd
from scipy.signal import argrelmax, argrelmin
In [169]:
w0 = gd.CartesianPhaseSpacePosition(pos=xyz, vel=vxyz)
orbits = mw_pot.integrate_orbit(w0, dt=0.5, nsteps=2000)
In [179]:
t = orbits.t
allfreqs = np.zeros((3,len(rc)))
for i in range(len(rc)):
cyl,_ = orbits[:,i].represent_as(coord.CylindricalRepresentation)
freqs = []
for name in ['rho','phi','z']:
i_max = argrelmax(getattr(cyl,name).value)[0]
i_min = argrelmin(getattr(cyl,name).value)[0]
T_max = t[i_max[1:]] - t[i_max[:-1]]
T_min = t[i_min[1:]] - t[i_min[:-1]]
freqs.append(2*np.pi/np.median((np.median(T_max).value, np.median(T_min).value)))
allfreqs[:,i] = freqs
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice.
warnings.warn("Mean of empty slice.", RuntimeWarning)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/numpy/core/_methods.py:70: RuntimeWarning: invalid value encountered in double_scalars
ret = ret.dtype.type(ret / rcount)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/numpy/lib/function_base.py:3142: RuntimeWarning: Invalid value encountered in median
RuntimeWarning)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/scipy/signal/_peak_finding.py:68: RuntimeWarning: invalid value encountered in greater
results &= comparator(main, plus)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/scipy/signal/_peak_finding.py:69: RuntimeWarning: invalid value encountered in greater
results &= comparator(main, minus)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/scipy/signal/_peak_finding.py:68: RuntimeWarning: invalid value encountered in less
results &= comparator(main, plus)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/scipy/signal/_peak_finding.py:69: RuntimeWarning: invalid value encountered in less
results &= comparator(main, minus)
Compute E, L for samples from uncertainty distribution to check typical error in E, L
In [77]:
def nan_median_absolute_deviation(x):
return np.nanmedian(np.abs(x - np.nanmedian(x)))
In [86]:
ntrials = 128
nsamples = 1024
E_MADs = []
L_MADs = []
for i in np.random.randint(len(rc), size=ntrials):
this_c = rv_c[i]
ra = np.zeros(nsamples) + this_c.ra.degree
dec = np.zeros(nsamples) + this_c.dec.degree
distance = np.random.normal(this_c.distance.value, distance_err.value[i], size=nsamples)
sample_c = coord.ICRS(ra=ra*u.degree, dec=dec*u.degree, distance=distance*u.kpc)
sample_xyz = sample_c.transform_to(coord.Galactocentric).cartesian.xyz
sample_pm_ra = np.random.normal(pm_ra.value[i], pm_ra_err.value[i], size=nsamples)*u.mas/u.yr
sample_pm_dec = np.random.normal(pm_dec.value[i], pm_dec_err.value[i], size=nsamples)*u.mas/u.yr
sample_rv = np.random.normal(rv.value[i], rv_err.value[i], size=nsamples)*u.km/u.s
sample_vxyz = gc.vhel_to_gal(sample_c, rv=sample_rv, pm=(sample_pm_ra, sample_pm_dec))
sample_L = np.cross(sample_xyz, sample_vxyz, axis=0)
sample_Ltot = np.sqrt(np.sum(sample_L**2, axis=0))
sample_E = mw_pot.total_energy(x=sample_xyz.decompose(galactic).value,
v=sample_vxyz.decompose(galactic).value)
E_MADs.append(nan_median_absolute_deviation(sample_E))
L_MADs.append(nan_median_absolute_deviation(sample_Ltot))
E_MADs = np.array(E_MADs)
L_MADs = np.array(L_MADs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/numpy/lib/nanfunctions.py:689: RuntimeWarning: All-NaN slice encountered
warnings.warn("All-NaN slice encountered", RuntimeWarning)
TAKING THE MEDIAN OF THE MEDIAN ABSOLUTE DEVIATIONS -- COME AT ME I HAVE NO FEAR
In [96]:
E_scale = 1.48 * np.nanmedian(E_MADs) # MAD to std dev
L_scale = 1.48 * np.nanmedian(L_MADs) # MAD to std dev
In [92]:
pl.figure(figsize=(8,6))
pl.scatter(Lxy, rc['age'], marker='o', alpha=0.24,
c=rc['alphaFe'], cmap='viridis')
pl.xscale('log')
cb = pl.colorbar()
cb.set_label(r'[$\alpha/{\rm Fe}$]')
pl.xlabel('$L_{xy}$')
pl.ylabel('Age [Gyr]')
Out[92]:
<matplotlib.text.Text at 0x207c332b0>
In [128]:
pl.figure(figsize=(8,6))
pl.scatter(np.log10(-E), Lxy, marker='o', alpha=0.24,
c=rc['age'], cmap='viridis')
pl.xlim(-1.5, -0.5)
pl.yscale('log')
cb = pl.colorbar()
cb.set_label('Age [Gyr]')
pl.xlabel(r'$\log_{10}(-E)$')
pl.ylabel('$L_{xy}$')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/ipykernel/__main__.py:2: RuntimeWarning: invalid value encountered in log10
from ipykernel import kernelapp as app
Out[128]:
<matplotlib.text.Text at 0x1207e0588>
In [183]:
pl.figure(figsize=(8,6))
pl.scatter(allfreqs[0], allfreqs[2], marker='o', alpha=0.24,
c=rc['age'], cmap='viridis')
pl.xlim(0., 0.1)
pl.ylim(0., 0.1)
cb = pl.colorbar()
cb.set_label('Age [Gyr]')
pl.xlabel(r'$\Omega_R$')
pl.ylabel(r'$\Omega_z$')
Out[183]:
<matplotlib.text.Text at 0x1641c7470>
In [184]:
pl.figure(figsize=(8,6))
pl.scatter(allfreqs[0], allfreqs[1], marker='o', alpha=0.24,
c=rc['age'], cmap='viridis')
pl.xlim(0., 0.1)
pl.ylim(0., 0.1)
cb = pl.colorbar()
cb.set_label('Age [Gyr]')
pl.xlabel(r'$\Omega_R$')
pl.ylabel(r'$\Omega_\phi$')
Out[184]:
<matplotlib.text.Text at 0x1641d9320>
In [94]:
from sklearn.cluster import KMeans
from astropy.stats import median_absolute_deviation
Cram the features into a matrix, X = (n_samples, n_features)
In [185]:
feature_cols = ['FeH', 'alphaFe', 'age'] + [x for x in rc.colnames if x.endswith('_H') and x!='PARAM_M_H']
feature_names = ['E', 'Lxy', 'Lz', 'Ltot', 'omegaR', 'omegaPhi', 'omegaZ'] + feature_cols
print(feature_names)
['E', 'Lxy', 'Lz', 'Ltot', 'omegaR', 'omegaPhi', 'omegaZ', 'FeH', 'alphaFe', 'age', 'AL_H', 'CA_H', 'C_H', 'FE_H', 'K_H', 'MG_H', 'MN_H', 'NA_H', 'NI_H', 'N_H', 'O_H', 'SI_H', 'S_H', 'TI_H', 'V_H']
In [100]:
logE = np.log10(-E / E_scale)
pl.hist(logE[np.isfinite(logE)], bins=64)
pl.xlim(1, 1.5)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/ipykernel/__main__.py:1: RuntimeWarning: invalid value encountered in log10
if __name__ == '__main__':
Out[100]:
(1, 1.5)
In [112]:
logLtot = np.log10(Ltot / L_scale)
logLxy = np.log10(Lxy / L_scale)
logLz = np.log10(-Lz / L_scale) # ignore retrograde for now :(
pl.hist(logLtot[np.isfinite(logLtot)], bins=64, alpha=0.4)
pl.hist(logLxy[np.isfinite(logLxy)], bins=64, alpha=0.4)
_ = pl.hist(logLz[np.isfinite(logLz)], bins=64, alpha=0.4)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/ipykernel/__main__.py:3: RuntimeWarning: invalid value encountered in log10
app.launch_new_instance()
In [186]:
X = np.zeros((len(rc), 7 + len(feature_cols))) # E, Lxy, Lz, Ltot, omegaR, omegaPhi, omegaZ + chemistry
X[:,0] = logE
X[:,1] = logLxy
X[:,2] = logLz
X[:,3] = logLtot
X[:,4:7] = allfreqs.T / 0.01
for i,col in enumerate(feature_cols, 7):
if '_H' in col:
scale = np.nanmedian(rc['{}_ERR'.format(col)])
else:
scale = 1.
X[:,i] = rc[col] / scale
# For now, only take stars with non-NAN values
non_nan = np.all(np.isfinite(X), axis=1)
X = X[non_nan]
In [187]:
X.shape
Out[187]:
(13352, 25)
Hard-set the number of clusters and the number of random KMeans initializations to choose from
In [188]:
n_clusters = 64
ntrials = 16
scores = np.zeros(ntrials)
for i in range(ntrials):
km = KMeans(n_clusters=n_clusters, random_state=i)
km.fit(X)
scores[i] = km.score(X)
Pick the "best" initialization based on the classification score
In [189]:
km = KMeans(n_clusters=n_clusters, random_state=scores.argmax())
km.fit(X)
km.score(X)
Out[189]:
-385918.77526273881
In [190]:
nmembers_per_cluster = np.zeros(km.n_clusters)
for k in range(km.n_clusters):
members = km.labels_ == k
nmembers_per_cluster[k] = members.sum()
In [191]:
pl.hist(nmembers_per_cluster)
Out[191]:
(array([ 6., 7., 12., 8., 5., 5., 8., 6., 2., 5.]),
array([ 1. , 48.3, 95.6, 142.9, 190.2, 237.5, 284.8, 332.1,
379.4, 426.7, 474. ]),
<a list of 10 Patch objects>)
In [192]:
def plot_clusters(xfeature, yfeature):
fig,ax = pl.subplots(1,1,figsize=(6,6))
ix0 = feature_names.index(xfeature)
ix1 = feature_names.index(yfeature)
for k in range(km.n_clusters):
members = km.labels_ == k
cluster_center = km.cluster_centers_[k]
l, = ax.plot(X[members, ix0], X[members, ix1], marker='.', ls='none')
# ax.plot(cluster_center[ix0], cluster_center[ix1], 'o', ls='none', color=l.get_color(),
# markeredgecolor='k', markersize=6)
pl.xlabel(xfeature)
pl.ylabel(yfeature)
In [193]:
plot_clusters("E", "Lxy")
In [194]:
plot_clusters("age", "E")
In [202]:
plot_clusters("omegaR", "Ltot")
In [205]:
alpha = 0.4
for k in range(km.n_clusters):
members = km.labels_ == k
# if members.sum() < nmembers_threshold:
# continue
this_c = rv_c[non_nan][members].transform_to(coord.Galactic)
this_galcen = this_c.transform_to(coord.Galactocentric)
this_xyz = this_galcen.represent_as(coord.CartesianRepresentation).xyz
this_cyl = this_galcen.represent_as(coord.CylindricalRepresentation)
fig,axes = pl.subplots(1,4,figsize=(20,5))
fig.suptitle("{}, {} stars".format(k,members.sum()), y=1.01, fontsize=20)
axes[0].plot(this_c.l.degree, this_c.b.degree, marker='.', ls='none', alpha=alpha)
axes[0].set_xlim(360, 0)
axes[0].set_ylim(-90, 90)
axes[0].set_xlabel("l [deg]")
axes[0].set_ylabel("b [deg]")
axes[1].plot(-8., 0., marker='o', color='r')
axes[1].plot(this_xyz[0].value, this_xyz[1].value, marker='.', ls='none', alpha=alpha)
axes[1].set_xlim(-20, 0)
axes[1].set_ylim(-10, 10)
axes[1].set_xlabel("x [kpc]")
axes[1].set_ylabel("y [kpc]")
axes[2].plot(8., 0., marker='o', color='r')
axes[2].plot(this_cyl.rho.value, this_cyl.z.value, marker='.', ls='none', alpha=alpha)
axes[2].set_xlim(4,18)
axes[2].set_ylim(-7, 7)
axes[2].set_xlabel("R [kpc]")
axes[2].set_ylabel("z [kpc]")
ix0 = feature_names.index('omegaR')
ix1 = feature_names.index('omegaZ')
axes[3].plot(X[members,ix0], X[members,ix1], marker='.', ls='none', alpha=alpha)
axes[3].set_xlim(0,10)
axes[3].set_ylim(0,10)
axes[3].set_xlabel(r"$\Omega_R$")
axes[3].set_ylabel(r"$\Omega_z$")
fig.tight_layout()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/pyplot.py:516: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
max_open_warning, RuntimeWarning)
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2228 orientation=orientation,
2229 bbox_inches_restore=_bbox_inches_restore,
-> 2230 **kwargs)
2231 finally:
2232 if bbox_inches and restore_bbox:
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x12f4493c8>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x1412f5ef0>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x13dff56a0>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x1414c1c50>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x11417feb8>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x14159e4a8>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x13a77da90>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2228 orientation=orientation,
2229 bbox_inches_restore=_bbox_inches_restore,
-> 2230 **kwargs)
2231 finally:
2232 if bbox_inches and restore_bbox:
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x141260470>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x11fb49f98>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x135302eb8>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x131c1ef60>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2228 orientation=orientation,
2229 bbox_inches_restore=_bbox_inches_restore,
-> 2230 **kwargs)
2231 finally:
2232 if bbox_inches and restore_bbox:
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x1366e8f28>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x12ed3f5f8>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x135dfaa58>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x1405aa2b0>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x12feaadd8>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x12e846630>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2228 orientation=orientation,
2229 bbox_inches_restore=_bbox_inches_restore,
-> 2230 **kwargs)
2231 finally:
2232 if bbox_inches and restore_bbox:
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x11f384cf8>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x162b90048>
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/formatters.py in __call__(self, obj)
335 pass
336 else:
--> 337 return printer(obj)
338 # Finally look for special method names
339 method = _safe_get_formatter_method(obj, self.print_method)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in <lambda>(fig)
207 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
208 if 'retina' in formats or 'png2x' in formats:
--> 209 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
210 if 'jpg' in formats or 'jpeg' in formats:
211 jpg_formatter.for_type(Figure, lambda fig: print_figure(fig, 'jpg', **kwargs))
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in retina_figure(fig, **kwargs)
123 def retina_figure(fig, **kwargs):
124 """format a figure as a pixel-doubled (retina) PNG"""
--> 125 pngdata = print_figure(fig, fmt='retina', **kwargs)
126 w, h = _pngxy(pngdata)
127 metadata = dict(width=w//2, height=h//2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/IPython/core/pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
115
116 bytes_io = BytesIO()
--> 117 fig.canvas.print_figure(bytes_io, **kw)
118 data = bytes_io.getvalue()
119 if fmt == 'svg':
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
2176 orientation=orientation,
2177 dryrun=True,
-> 2178 **kwargs)
2179 renderer = self.figure._cachedRenderer
2180 bbox_inches = self.figure.get_tightbbox(renderer)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, *args, **kwargs)
525
526 def print_png(self, filename_or_obj, *args, **kwargs):
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 original_dpi = renderer.dpi
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in draw(self)
472
473 try:
--> 474 self.figure.draw(self.renderer)
475 finally:
476 RendererAgg.lock.release()
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/figure.py in draw(self, renderer)
1131 dsu.sort(key=itemgetter(0))
1132 for zorder, a, func, args in dsu:
-> 1133 func(*args)
1134
1135 renderer.close_group('figure')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axes/_base.py in draw(self, renderer, inframe)
2302
2303 for zorder, a in dsu:
-> 2304 a.draw(renderer)
2305
2306 renderer.close_group('axes')
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/axis.py in draw(self, renderer, *args, **kwargs)
1118 self._update_label_position(ticklabelBoxes, ticklabelBoxes2)
1119
-> 1120 self.label.draw(renderer)
1121
1122 self._update_offset_text_position(ticklabelBoxes, ticklabelBoxes2)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
59 def draw_wrapper(artist, renderer, *args, **kwargs):
60 before(artist, renderer)
---> 61 draw(artist, renderer, *args, **kwargs)
62 after(artist, renderer)
63
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in draw(self, renderer)
747
748 with _wrap_text(self) as textobj:
--> 749 bbox, info, descent = textobj._get_layout(renderer)
750 trans = textobj.get_transform()
751
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/text.py in _get_layout(self, renderer)
359 w, h, d = renderer.get_text_width_height_descent(clean_line,
360 self._fontproperties,
--> 361 ismath=ismath)
362 else:
363 w, h, d = 0, 0, 0
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/backends/backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
232 if ismath:
233 ox, oy, width, height, descent, fonts, used_characters = \
--> 234 self.mathtext_parser.parse(s, self.dpi, prop)
235 return width, height, descent
236
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in parse(self, s, dpi, prop)
3103 fontset_class = self._font_type_mapping.get(fontset.lower())
3104 if fontset_class is not None:
-> 3105 font_output = fontset_class(prop, backend)
3106 else:
3107 raise ValueError(
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
678
679 def __init__(self, *args, **kwargs):
--> 680 self._stix_fallback = StixFonts(*args, **kwargs)
681
682 TruetypeFonts.__init__(self, *args, **kwargs)
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, *args, **kwargs)
912
913 def __init__(self, *args, **kwargs):
--> 914 TruetypeFonts.__init__(self, *args, **kwargs)
915 self.fontmap = {}
916 for key, name in six.iteritems(self._fontmap):
/Users/adrian/anaconda/envs/three/lib/python3.5/site-packages/matplotlib/mathtext.py in __init__(self, default_font_prop, mathtext_backend)
564
565 filename = findfont(default_font_prop)
--> 566 default_font = self.CachedFont(FT2Font(filename))
567 self._fonts['default'] = default_font
568 self._fonts['regular'] = default_font
TypeError: First argument must be a path or file object reading bytes
<matplotlib.figure.Figure at 0x1300f8438>
In [ ]:
Content source: adrn/BruceWillis
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