Registration Benchmark

Compiled Discriminability Scores

BNU1 LMU1 HNU1
Original 0.9336 0.7852
EPIREG 0.9100 0.7604
MNI-EPI-Template + FLIRT 0.9210 0.7664 0.9474
BNU1
MNI-EPI-Template + FLIRT + FNIRT (No tweaks) 0.8916
MNI-EPI-Template + FLIRT + FNIRT (MNI152 Config) 0.7046
MNI-EPI-Template + FLIRT + FNIRT (MNI152 Config + Membrane Energy) 0.7112
MNI-EPI-Template + FLIRT + FNIRT (Membrane Energy) 0.7099

In [1]:
%matplotlib inline
import matplotlib
import numpy as np
import matplotlib.pyplot as plt

x = [0, 1]
xlabels = ['BNU1', 'LMU1']

orig = [0.9336, 0.7852]
epireg = [0.9100, 0.7604]
mniepiflirt = [0.9210, 0.7664]
mniepiflirtfnirt0 = [0.8916, None]
mniepiflirtfnirt1 = [0.7046, None]
mniepiflirtfnirt2 = [0.7112, None]
mniepiflirtfnirt3 = [0.7099, None]

plt.scatter(x, orig, color='r', label="Original")
plt.scatter(x, epireg, color='b', label ="EPIREG")
plt.scatter(x, mniepiflirt, color='y', label="MNI-EPI-Template + FLIRT")
plt.scatter(x, mniepiflirtfnirt0, label="MNI-EPI-Template + FLIRT + FNIRT (No tweaks)")
plt.scatter(x, mniepiflirtfnirt1, label="MNI-EPI-Template + FLIRT + FNIRT (MNI152 Config)")
plt.scatter(x, mniepiflirtfnirt2, label="MNI-EPI-Template + FLIRT + FNIRT (MNI152 Config + Membrane Energy)")
plt.scatter(x, mniepiflirtfnirt3, label="MNI-EPI-Template + FLIRT + FNIRT (Membrane Energy)")


plt.ylabel("MNR")
plt.xlabel("Dataset")
plt.legend(loc='center', bbox_to_anchor=(1.8,0.5))
plt.title("Discriminability Scores")
plt.xticks(x, xlabels)

plt.show()


Qualititative Registration Results

BNU1: EPIREG

BNU1: MNI-EPI-Template + FLIRT + FNIRT (MNI152 Config)

BNU1: MNI-EPI-Template + FLIRT + FNIRT (MNI152 Config + Membrane Energy)

BNU1: MNI-EPI-Template + FLIRT + FNIRT (Membrane Energy)

LMU1: EPIREG

LMU1: MNI-EPI-Template + FLIRT

HNU1: MNI-EPI-Template + FLIRT

Discriminability Plots

BNU1: EPIREG

BNU1: MNI-EPI-Template + FLIRT

BNU1: MNI-EPI-Template + FLIRT + FNIRT (MNI152 Config)

BNU1: MNI-EPI-Template + FLIRT + FNIRT (MNI152 Config + Membrane Energy)

BNU1: MNI-EPI-Template + FLIRT + FNIRT (Membrane Energy)

LMU1: EPIREG

LMU1: MNI-EPI-Template + FLIRT

HNU1: MNI-EPI-Template + FLIRT


In [ ]: