In [112]:

    

%matplotlib inline
%config InlineBackend.figure_format = 'retina'
import asyncio
import aiohttp
import json
import matplotlib.pyplot as plt
import numpy as np
import os
import pandas as pd
import requests
import seaborn as sns
from datetime import datetime
from dateutil.parser import parse
from collections import defaultdict
pd.options.display.max_rows = 200
pd.options.display.max_columns = 50
from IPython.core.display import display, HTML
display(HTML("<style>.container { width:80% !important; }</style>"))


    

In [113]:

    

# Copied from pyencoded-tools/encodedcc.py to avoid dependency.
class ENC_Key:
    def __init__(self, keyfile, keyname):
        if os.path.isfile(str(keyfile)):
            keys_f = open(keyfile, 'r')
            keys_json_string = keys_f.read()
            keys_f.close()
            keys = json.loads(keys_json_string)
        else:
            keys = keyfile
        key_dict = keys[keyname]
        self.authid = key_dict['key']
        self.authpw = key_dict['secret']
        self.server = key_dict['server']
        if not self.server.endswith("/"):
            self.server += "/"

            
class ENC_Connection(object):
    def __init__(self, key):
        self.headers = {'content-type': 'application/json', 'accept': 'application/json'}
        self.server = key.server
        self.auth = (key.authid, key.authpw)


    

In [114]:

    

# Define key if private data desired.
key = ENC_Key(os.path.expanduser("~/keypairs.json"), 'prod')
auth = (key.authid, key.authpw)
base_url = 'https://www.encodeproject.org'
json_all = 'limit=all&format=json'
json_only = 'format=json'


    

In [142]:

    

experiment_data_cache = {}


    

In [129]:

    

original_file_data_cache = {}


    

In [60]:

    

loop = asyncio.get_event_loop()
session = create_session()
request_auth = aiohttp.BasicAuth(key.authid, key.authpw)


    

In [156]:

    

bad_statuses = ['archived', 'revoked']
filter_formats = ['fastq', 'csfasta', 'csqual']
filter_file_statuses = []

def create_session():
    connector = aiohttp.TCPConnector(keepalive_timeout=10, limit=100)
    return aiohttp.ClientSession(connector=connector)

async def async_get_data(url, session):
    r = await session.get(url, auth=request_auth)
    try:
        assert r.status == 200
    except AssertionError as e:
        raise Exception(url, await r.text()) from e
    try:
        return await r.json()['@graph']
    except:
        return await r.json()
    
def quick_grab_data(urls):
    data = []
    f = [async_get_data(url, session) for url in urls]
    async_tasks = asyncio.gather(*f)
    data.extend(loop.run_until_complete(async_tasks))
    return data

def get_data(url):
    r = requests.get(url, auth=auth)
    try:
        assert r.status_code == 200
    except AssertionError as e:
        raise Exception(url, r.text) from e
    try:
        return r.json()['@graph']
    except:
        return r.json()

def save_data(data, filename):
    with open(filename, 'w') as f:
        json.dump(data, f)
        
def open_data(filename):
    with open(filename, 'r') as f:
        data = json.load(f)
    return data

def parse_replicates(file, rep_type, rep_num):
    if rep_num is np.nan:
        new_rep_num = file.get(rep_type, [])
        if new_rep_num:
            nums = set()
            for num in new_rep_num:
                if '_' in str(num):
                    nums.add(int(str(num).split('_')[1]))
                else:
                    nums.add(int(num))
            return nums
        else:
            return set([np.nan])
    else:
        return set([rep_num])
    
def get_replacement(replaced_accession):
    replacement = get_data('{}/{}/?{}'.format(base_url, replaced_accession, json_only))
    return replacement

def extract_file_data(file):
    accession = file['accession']
    file_id = file['@id']
    file_status = file['status']
    if file['status'] == 'replaced':
        # Use replacement data.
        file = get_replacement(accession)
    bio_rep_num = parse_replicates(file, 'biological_replicates', file.get('replicate', {}).get('biological_replicate_number', np.nan))
    tech_rep_num = parse_replicates(file, 'technical_replicates', file.get('replicate', {}).get('technical_replicate_number', np.nan))
    data = {'accession': accession,
            '@id': file_id,
            'status': file_status,
            'date_created': parse(file['date_created']),
            'dataset': file['dataset'],
            'file_format': file['file_format'],
            'biological_replicate_number': bio_rep_num,
            'technical_replicate_number': tech_rep_num,
            'derived_from': sorted([f for f in file.get('derived_from', []) if f not in excluded])}
    return data

def extract_experiment_data(experiment):
    data = {'accession': experiment['accession'],
            '@id': experiment['@id'],
            'original_files': experiment['original_files'],
            'files': experiment['files'],
            'lab': experiment['lab']['title']}
    return data

def parse_data(items, extract_method, **kwargs):
    parsed_data = []
    for item in items:
        parsed_data.append(extract_method(item, **kwargs))
    return parsed_data

def get_experiment_data(files_data):
    experiments_data = quick_grab_data(['{}{}?{}'.format(base_url, file['dataset'],json_only)
                                        for file in files_data if file['dataset'] not in experiment_data_cache])
    experiments_data = parse_data(experiments_data, extract_experiment_data)
    experiment_data_cache.update({e['@id']: e for e in experiments_data})
    experiments_data = [experiment_data_cache[file['dataset']] for file in files_data]
    return experiments_data

def search_original_files(experiment, file_bio_rep_num, file_tech_rep_num, file_created, child_file_id):
    all_file_data = quick_grab_data(['{}{}/?{}'.format(base_url, file_id, json_all)
                                     for file_id in experiment['original_files']
                                     if ((file_id not in original_file_data_cache) and (file_id != child_file_id))])
    all_file_data = parse_data(all_file_data, extract_file_data)
    original_file_data_cache.update({r['@id']: r for r in all_file_data})
    experiment_original_files = [original_file_data_cache[file_id] for file_id
                                 in experiment['original_files'] if file_id != child_file_id]
    all_file_data = experiment_original_files
    weakly_filtered_data = [f for f in all_file_data 
                            if ((f['biological_replicate_number'] == file_bio_rep_num)
                                and (f['file_format'] in filter_formats))]
    filtered_data = [f for f in all_file_data
                     if ((f['status'] not in bad_statuses)
                         and (f['biological_replicate_number'] == file_bio_rep_num)
                         and (f['technical_replicate_number'] == file_tech_rep_num)
                         and (f['date_created'] <= file_created)
                         and (f['file_format'] in filter_formats))]
    try:
        filtered_ids = [f['@id'] for f in filtered_data]
    except KeyError:
        print(filtered_data)
    experiment['new_files'] = filtered_ids
    experiment['matching_filters'] = len(weakly_filtered_data) == len(filtered_data)
    experiment['filtered_data'] = sorted([(f['accession'], f['status']) for f in filtered_data])
    experiment['weakly_filtered_data'] = sorted([(f['accession'], f['status']) for f in weakly_filtered_data])
    return experiment
    
def find_new_derived_from(file, experiment):
    child_file_id = file['@id']
    file_bio_rep_num = file['biological_replicate_number']
    file_tech_rep_num = file['technical_replicate_number']
    file_created = file['date_created']
    experiment = search_original_files(experiment, file_bio_rep_num, file_tech_rep_num, file_created, child_file_id)
    matching_files = sorted(experiment['new_files'])
    derived_from = matching_files if matching_files else []
    data = {'accession': file['accession'],
            'derived_from': derived_from,
            'matching_filters': experiment['matching_filters'],
            'filtered_data': experiment['filtered_data'],
            'weakly_filtered_data': experiment['weakly_filtered_data']}
    return data

def check_for_matching_derived_from(files, experiments):
    data_mask = []
    new_derived_from_data = []
    assert len(files) == len(experiments)
    for file, experiment in zip(files, experiments):
        # Generate possible derived_from list from original_files:
        new_derived_from = find_new_derived_from(file, experiment)
        new_derived_from_data.append(new_derived_from)
        if False:#not new_derived_from['matching_filters']:
            print('Filter mismatch',
                  '\nFile:', file['accession'], 
                  '\nFiltered data:', experiment['filtered_data'],
                  '\nWeakly filtered data:', experiment['weakly_filtered_data'])
        # If file already has derived_from:
        if file['derived_from']:
            if (set(file['derived_from']) == set(new_derived_from['derived_from'])):
                data_mask.append(True)
            else:
                print('Mismatch: ',
                      file['accession'],
                      file['status'],
                      '\nActual:',
                      file['derived_from'],
                      '\nCalculated:',
                      new_derived_from['derived_from'], '\n')
                data_mask.append(False)
        else:
            if new_derived_from['derived_from']:
                data_mask.append(True)
            else:
                print('No derived_from found: ', file['accession'], file['status'])
                data_mask.append(False)
    assert len(data_mask) == len(files) == len(experiments)
    return data_mask, new_derived_from_data
            
def main(data):
    files_data = [f for f in parse_data(data, extract_file_data)
                  if f['status'] not in filter_file_statuses]
    experiments_data = get_experiment_data(files_data)
    derived_from_match, new_derived_from_data = check_for_matching_derived_from(files_data, experiments_data)
    return np.array(files_data), np.array(experiments_data), derived_from_match, np.array(new_derived_from_data)


    

In [104]:

    

# Get derived_from .tar files to filter.
references = [d['@id'] for d in get_data('https://www.encodeproject.org/search/'
                                         '?type=File&output_category=reference&limit=all&format=json')]
blacklists = [d['@id'] for d in get_data('https://www.encodeproject.org/search/'
                                         '?type=File&output_type=blacklisted+regions&limit=all&format=json')]
excluded = references + blacklists


    

In [105]:

    

url_with_derived_from = 'https://www.encodeproject.org/search/?type=File&replicate.biological_replicate_number=%2A&file_format=bam&derived_from=%2A&frame=embedded&limit=all&format=json'
url_no_derived_from = 'https://www.encodeproject.org/search/?type=File&replicate.biological_replicate_number=%2A&file_format=bam&derived_from%21=%2A&frame=embedded&limit=all&format=json'


    

In [106]:

    

derived_from = get_data(url_with_derived_from)


    

In [107]:

    

len(derived_from)


    

    
Out[107]:





17092

In [187]:

    

derived_from_rows = pd.DataFrame([(df['accession'], df['status'], df['derived_from']) for df in derived_from]).rename(columns={0: 'accession', 1: 'status', 2: 'derived_from'})


    

In [192]:

    

derived_from_rows.to_csv('BAM_replicate_field_with_derived_from_08_16_2017.tsv', index=False, sep='\t')


    

In [532]:

    

save_data(derived_from, 'derived_from_with_replicate_08_16_2017.json')


    

In [ ]:

    

derived_from = open_data('derived_from_with_replicate_08_16_2017.json')


    

In [11]:

    

no_derived_from = get_data(url_no_derived_from)


    

In [12]:

    

len(no_derived_from)


    

    
Out[12]:





4422

In [17]:

    

save_data(no_derived_from, 'no_derived_from_with_replicate_08_16_2017.json')


    

In [ ]:

    

no_derived_from = open_data('no_derived_from_with_replicate_08_16_2017.json')


    

In [197]:

    

no_derived_from_rows = pd.DataFrame([(df['accession'], df['status']) for df in no_derived_from]).rename(columns={0: 'accession', 1: 'status'})
no_derived_from_rows


    

    
Out[197]:







  

    

      

      
accession
      
status
    
  
  

    

      
0
      
ENCFF001QWY
      
archived
    
    

      
1
      
ENCFF001QFI
      
replaced
    
    

      
2
      
ENCFF001NVL
      
released
    
    

      
3
      
ENCFF000YWW
      
released
    
    

      
4
      
ENCFF000WCB
      
released
    
    

      
5
      
ENCFF000ZAF
      
archived
    
    

      
6
      
ENCFF000WJH
      
released
    
    

      
7
      
ENCFF000ZDX
      
archived
    
    

      
8
      
ENCFF001KZB
      
released
    
    

      
9
      
ENCFF001JZP
      
replaced
    
    

      
10
      
ENCFF000OFG
      
archived
    
    

      
11
      
ENCFF000OEZ
      
archived
    
    

      
12
      
ENCFF000WKF
      
released
    
    

      
13
      
ENCFF000WKP
      
released
    
    

      
14
      
ENCFF000WLL
      
released
    
    

      
15
      
ENCFF000PKV
      
archived
    
    

      
16
      
ENCFF000NAT
      
released
    
    

      
17
      
ENCFF000WLR
      
released
    
    

      
18
      
ENCFF000NED
      
released
    
    

      
19
      
ENCFF000QXV
      
released
    
    

      
20
      
ENCFF000CAR
      
archived
    
    

      
21
      
ENCFF001NBQ
      
released
    
    

      
22
      
ENCFF001MYP
      
released
    
    

      
23
      
ENCFF000OWI
      
archived
    
    

      
24
      
ENCFF000OWQ
      
released
    
    

      
25
      
ENCFF000NTF
      
archived
    
    

      
26
      
ENCFF000OWM
      
released
    
    

      
27
      
ENCFF000AMO
      
archived
    
    

      
28
      
ENCFF000NUT
      
archived
    
    

      
29
      
ENCFF000AMJ
      
archived
    
    

      
30
      
ENCFF000OMH
      
archived
    
    

      
31
      
ENCFF000ONW
      
released
    
    

      
32
      
ENCFF000WVZ
      
archived
    
    

      
33
      
ENCFF000WVN
      
archived
    
    

      
34
      
ENCFF000WVW
      
archived
    
    

      
35
      
ENCFF000ONZ
      
archived
    
    

      
36
      
ENCFF000VIO
      
archived
    
    

      
37
      
ENCFF000PWE
      
released
    
    

      
38
      
ENCFF000OQE
      
archived
    
    

      
39
      
ENCFF000RGR
      
archived
    
    

      
40
      
ENCFF002BKY
      
released
    
    

      
41
      
ENCFF002BKV
      
released
    
    

      
42
      
ENCFF001DRA
      
deleted
    
    

      
43
      
ENCFF001DRX
      
deleted
    
    

      
44
      
ENCFF001LME
      
revoked
    
    

      
45
      
ENCFF001KKL
      
released
    
    

      
46
      
ENCFF001LLB
      
revoked
    
    

      
47
      
ENCFF001EPJ
      
replaced
    
    

      
48
      
ENCFF001KLJ
      
archived
    
    

      
49
      
ENCFF001LNL
      
released
    
    

      
50
      
ENCFF001KCZ
      
released
    
    

      
51
      
ENCFF001MPV
      
released
    
    

      
52
      
ENCFF001KDI
      
released
    
    

      
53
      
ENCFF001NYN
      
replaced
    
    

      
54
      
ENCFF001MQC
      
released
    
    

      
55
      
ENCFF000VVM
      
archived
    
    

      
56
      
ENCFF000YRM
      
archived
    
    

      
57
      
ENCFF000YQX
      
archived
    
    

      
58
      
ENCFF000TDG
      
archived
    
    

      
59
      
ENCFF000VYK
      
archived
    
    

      
60
      
ENCFF000QXY
      
released
    
    

      
61
      
ENCFF000SGG
      
archived
    
    

      
62
      
ENCFF000RBF
      
archived
    
    

      
63
      
ENCFF000PSC
      
archived
    
    

      
64
      
ENCFF000WTZ
      
archived
    
    

      
65
      
ENCFF000YAN
      
archived
    
    

      
66
      
ENCFF000NLS
      
archived
    
    

      
67
      
ENCFF000NNQ
      
released
    
    

      
68
      
ENCFF000AIE
      
released
    
    

      
69
      
ENCFF001MZB
      
archived
    
    

      
70
      
ENCFF000OZY
      
archived
    
    

      
71
      
ENCFF000QHN
      
archived
    
    

      
72
      
ENCFF000QHP
      
archived
    
    

      
73
      
ENCFF000NGE
      
archived
    
    

      
74
      
ENCFF000NGR
      
archived
    
    

      
75
      
ENCFF001MZS
      
released
    
    

      
76
      
ENCFF000OWU
      
archived
    
    

      
77
      
ENCFF000NTO
      
archived
    
    

      
78
      
ENCFF000AMY
      
archived
    
    

      
79
      
ENCFF000OZM
      
released
    
    

      
80
      
ENCFF000XED
      
released
    
    

      
81
      
ENCFF000RLA
      
revoked
    
    

      
82
      
ENCFF000QAK
      
archived
    
    

      
83
      
ENCFF000VMH
      
released
    
    

      
84
      
ENCFF000ZVG
      
replaced
    
    

      
85
      
ENCFF000XFY
      
archived
    
    

      
86
      
ENCFF000SRS
      
archived
    
    

      
87
      
ENCFF000SRV
      
archived
    
    

      
88
      
ENCFF000XGE
      
archived
    
    

      
89
      
ENCFF000RMN
      
released
    
    

      
90
      
ENCFF001LLP
      
revoked
    
    

      
91
      
ENCFF001LMY
      
replaced
    
    

      
92
      
ENCFF001LLQ
      
released
    
    

      
93
      
ENCFF001KKP
      
released
    
    

      
94
      
ENCFF001ERR
      
replaced
    
    

      
95
      
ENCFF001KMN
      
released
    
    

      
96
      
ENCFF001LOT
      
released
    
    

      
97
      
ENCFF001LOY
      
replaced
    
    

      
98
      
ENCFF001KOD
      
released
    
    

      
99
      
ENCFF001NGB
      
released
    
    

      
...
      
...
      
...
    
    

      
4322
      
ENCFF001IWL
      
revoked
    
    

      
4323
      
ENCFF001LBK
      
archived
    
    

      
4324
      
ENCFF001LFJ
      
archived
    
    

      
4325
      
ENCFF001LBV
      
archived
    
    

      
4326
      
ENCFF000GND
      
archived
    
    

      
4327
      
ENCFF001LDV
      
archived
    
    

      
4328
      
ENCFF000DWA
      
archived
    
    

      
4329
      
ENCFF001LCJ
      
archived
    
    

      
4330
      
ENCFF000MSK
      
archived
    
    

      
4331
      
ENCFF000DPD
      
archived
    
    

      
4332
      
ENCFF000MUK
      
archived
    
    

      
4333
      
ENCFF001MFL
      
archived
    
    

      
4334
      
ENCFF000CWZ
      
archived
    
    

      
4335
      
ENCFF000MSL
      
revoked
    
    

      
4336
      
ENCFF000DFP
      
archived
    
    

      
4337
      
ENCFF000CXE
      
archived
    
    

      
4338
      
ENCFF001LDM
      
archived
    
    

      
4339
      
ENCFF000MVQ
      
revoked
    
    

      
4340
      
ENCFF000DVR
      
archived
    
    

      
4341
      
ENCFF001QXG
      
revoked
    
    

      
4342
      
ENCFF000FXH
      
archived
    
    

      
4343
      
ENCFF001JDY
      
archived
    
    

      
4344
      
ENCFF001ZJB
      
revoked
    
    

      
4345
      
ENCFF001ZQK
      
revoked
    
    

      
4346
      
ENCFF000IEU
      
archived
    
    

      
4347
      
ENCFF001JBL
      
revoked
    
    

      
4348
      
ENCFF000MPI
      
archived
    
    

      
4349
      
ENCFF001LDG
      
archived
    
    

      
4350
      
ENCFF001LBP
      
archived
    
    

      
4351
      
ENCFF000DFV
      
archived
    
    

      
4352
      
ENCFF000LMU
      
released
    
    

      
4353
      
ENCFF000DMK
      
archived
    
    

      
4354
      
ENCFF000MOY
      
archived
    
    

      
4355
      
ENCFF001LEF
      
archived
    
    

      
4356
      
ENCFF001LAY
      
archived
    
    

      
4357
      
ENCFF001LEW
      
archived
    
    

      
4358
      
ENCFF000MTY
      
archived
    
    

      
4359
      
ENCFF000MSJ
      
revoked
    
    

      
4360
      
ENCFF001LDN
      
archived
    
    

      
4361
      
ENCFF000MVE
      
archived
    
    

      
4362
      
ENCFF000MOE
      
archived
    
    

      
4363
      
ENCFF000CWY
      
archived
    
    

      
4364
      
ENCFF001MFM
      
archived
    
    

      
4365
      
ENCFF000MVC
      
archived
    
    

      
4366
      
ENCFF000MRG
      
archived
    
    

      
4367
      
ENCFF000GVF
      
deleted
    
    

      
4368
      
ENCFF000FVM
      
deleted
    
    

      
4369
      
ENCFF001JEJ
      
revoked
    
    

      
4370
      
ENCFF001MGW
      
archived
    
    

      
4371
      
ENCFF000MQV
      
archived
    
    

      
4372
      
ENCFF001LDU
      
archived
    
    

      
4373
      
ENCFF000MTZ
      
archived
    
    

      
4374
      
ENCFF000DOX
      
archived
    
    

      
4375
      
ENCFF000DMQ
      
archived
    
    

      
4376
      
ENCFF001LCT
      
archived
    
    

      
4377
      
ENCFF000EPI
      
deleted
    
    

      
4378
      
ENCFF001QYG
      
revoked
    
    

      
4379
      
ENCFF000FPP
      
archived
    
    

      
4380
      
ENCFF001JCL
      
revoked
    
    

      
4381
      
ENCFF001IKE
      
revoked
    
    

      
4382
      
ENCFF001QXT
      
revoked
    
    

      
4383
      
ENCFF001JFX
      
revoked
    
    

      
4384
      
ENCFF001IZY
      
revoked
    
    

      
4385
      
ENCFF001JJG
      
archived
    
    

      
4386
      
ENCFF000GZS
      
deleted
    
    

      
4387
      
ENCFF001IOB
      
revoked
    
    

      
4388
      
ENCFF000GOC
      
deleted
    
    

      
4389
      
ENCFF001MKX
      
archived
    
    

      
4390
      
ENCFF001IYA
      
revoked
    
    

      
4391
      
ENCFF000EVK
      
deleted
    
    

      
4392
      
ENCFF001JEQ
      
revoked
    
    

      
4393
      
ENCFF000FYJ
      
archived
    
    

      
4394
      
ENCFF001JQS
      
revoked
    
    

      
4395
      
ENCFF000FTC
      
deleted
    
    

      
4396
      
ENCFF000FOO
      
deleted
    
    

      
4397
      
ENCFF001MGK
      
archived
    
    

      
4398
      
ENCFF001RCP
      
deleted
    
    

      
4399
      
ENCFF000MUM
      
archived
    
    

      
4400
      
ENCFF001LEE
      
archived
    
    

      
4401
      
ENCFF000HCK
      
archived
    
    

      
4402
      
ENCFF000GVE
      
deleted
    
    

      
4403
      
ENCFF001MHC
      
archived
    
    

      
4404
      
ENCFF001ZKR
      
revoked
    
    

      
4405
      
ENCFF001IKA
      
revoked
    
    

      
4406
      
ENCFF000ELU
      
deleted
    
    

      
4407
      
ENCFF000HGX
      
deleted
    
    

      
4408
      
ENCFF000HWD
      
deleted
    
    

      
4409
      
ENCFF000CXF
      
archived
    
    

      
4410
      
ENCFF000DTM
      
archived
    
    

      
4411
      
ENCFF001LBJ
      
archived
    
    

      
4412
      
ENCFF001LBE
      
archived
    
    

      
4413
      
ENCFF000MSZ
      
archived
    
    

      
4414
      
ENCFF000DVZ
      
archived
    
    

      
4415
      
ENCFF000DTL
      
archived
    
    

      
4416
      
ENCFF000DFY
      
archived
    
    

      
4417
      
ENCFF001NDB
      
revoked
    
    

      
4418
      
ENCFF000MRT
      
archived
    
    

      
4419
      
ENCFF000MOF
      
archived
    
    

      
4420
      
ENCFF001LFC
      
archived
    
    

      
4421
      
ENCFF000MQN
      
archived
    
  

4422 rows × 2 columns

In [198]:

    

no_derived_from_rows.to_csv('BAM_replicate_field_with_no_derived_from_08_16_2017.tsv', index=False, sep='\t')


    

In [155]:

    

df_files, df_experiments, df_derived_from_match, df_new_derived_from_data = main(derived_from[:100])
#print(df_derived_from_match)
print('Calculated derived_from different from actual: {}%'.format(round((((1 - (sum(df_derived_from_match)) / len(df_derived_from_match))) * 100), 1)))
df_no_match_filters = [d for d in df_new_derived_from_data if not d['matching_filters']]
print('Mismatching weak versus regular filter: {}%'.format(round((len(df_no_match_filters) / len(df_new_derived_from_data)) * 100, 1)))
len(df_derived_from_match)


    

    




Mismatch:  ENCFF002DNZ archived 
Actual: ['/files/ENCFF002DOH/'] 
Calculated: [] 

Mismatch:  ENCFF000LBQ released 
Actual: ['/files/ENCFF000LAJ/', '/files/ENCFF000LAM/'] 
Calculated: ['/files/ENCFF000LAJ/', '/files/ENCFF000LAM/', '/files/ENCFF000LAN/', '/files/ENCFF000LAO/'] 

Mismatch:  ENCFF792CRN in progress 
Actual: ['/files/ENCFF209DSC/', '/files/ENCFF669WDN/'] 
Calculated: ['/files/ENCFF209DSC/', '/files/ENCFF494HWB/', '/files/ENCFF553WWW/', '/files/ENCFF669WDN/', '/files/ENCFF716AJV/', '/files/ENCFF735REN/', '/files/ENCFF942JPK/', '/files/ENCFF975OSR/'] 

Mismatch:  ENCFF874XDR in progress 
Actual: ['/files/ENCFF070KEN/', '/files/ENCFF779NJB/'] 
Calculated: ['/files/ENCFF036OKM/', '/files/ENCFF070KEN/', '/files/ENCFF117RDF/', '/files/ENCFF564ANK/', '/files/ENCFF619ZMW/', '/files/ENCFF779NJB/', '/files/ENCFF930VFF/', '/files/ENCFF957HAC/'] 

Calculated derived_from different from actual: 4.0%
Mismatching weak versus regular filter: 4.0%






    
Out[155]:





100

In [139]:

    

a, b, c, d = main([get_data('https://www.encodeproject.org/files/5601bcd3-624c-461b-a323-1448f6d165c6/')])
c, d


    

    
Out[139]:





([True],
 array([ {'weakly_filtered_data': [('ENCFF000SJD', 'released'), ('ENCFF000SJF', 'released'), ('ENCFF000SJL', 'released')], 'derived_from': ['/files/ENCFF000SJD/'], 'filtered_data': [('ENCFF000SJD', 'released')], 'accession': 'ENCFF000SIJ', 'matching_filters': False}], dtype=object))

In [796]:

    

# for x in no_match_filters:
#     print()
#     for k, v in sorted(x.items()):
#          print(k, v)


    

In [141]:

    

# Get all replaced BAM files with no derived_from.
replaced_no_derived_from = get_data('https://www.encodeproject.org/'
                                    'search/?type=File&replicate.biological_replicate_number=%2A'
                                    '&file_format=bam&derived_from%21=%2A&status=replaced&limit=all&frame=embedded&format=json')


    

In [165]:

    

len(replaced_no_derived_from)


    

    
Out[165]:





202

In [142]:

    

a, b, c, d = main(replaced_no_derived_from)


    

    




No derived_from found:  ENCFF001NRC replaced
No derived_from found:  ENCFF000ZVG replaced
No derived_from found:  ENCFF001NRA replaced
No derived_from found:  ENCFF001DYQ replaced
Mismatch:  ENCFF001QGL replaced 
Actual: ['/files/ENCFF001OZH/', '/files/ENCFF001OZI/', '/files/ENCFF001OZJ/', '/files/ENCFF001OZK/', '/files/ENCFF001OZL/', '/files/ENCFF001OZM/', '/files/ENCFF001OZN/', '/files/ENCFF001OZO/', '/files/ENCFF001OZP/', '/files/ENCFF001OZQ/', '/files/ENCFF001OZR/', '/files/ENCFF001OZS/', '/files/ENCFF001OZT/', '/files/ENCFF001OZU/', '/files/ENCFF001OZV/', '/files/ENCFF001OZW/', '/files/ENCFF001OZX/', '/files/ENCFF001OZY/', '/files/ENCFF001OZZ/', '/files/ENCFF001PAA/', '/files/ENCFF001PAB/', '/files/ENCFF001PAC/', '/files/ENCFF001PAD/', '/files/ENCFF001PAE/', '/files/ENCFF001PAF/', '/files/ENCFF001PAG/', '/files/ENCFF001PAH/', '/files/ENCFF001PAI/', '/files/ENCFF001PAJ/', '/files/ENCFF001PAK/', '/files/ENCFF001PAL/'] 
Calculated: [] 

No derived_from found:  ENCFF001KKV replaced
No derived_from found:  ENCFF000ZVN replaced
No derived_from found:  ENCFF000ZVR replaced
No derived_from found:  ENCFF001QFM replaced
No derived_from found:  ENCFF000ZVX replaced
No derived_from found:  ENCFF000ZVM replaced
No derived_from found:  ENCFF001NCJ replaced
No derived_from found:  ENCFF001LAD replaced

In [144]:

    

no_derived_found_replaced = d[[not b for b in c]]


    

In [156]:

    

no_derived_found_replaced


    

    
Out[156]:





array([ {'weakly_filtered_data': [('ENCFF001NRF', 'revoked')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001NRC', 'matching_filters': False},
       {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF000ZVG', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001NRE', 'revoked')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001NRA', 'matching_filters': False},
       {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001DYQ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001OZH', 'released'), ('ENCFF001OZI', 'released'), ('ENCFF001OZJ', 'released'), ('ENCFF001OZK', 'released'), ('ENCFF001OZL', 'released'), ('ENCFF001OZM', 'released'), ('ENCFF001OZN', 'released'), ('ENCFF001OZO', 'released'), ('ENCFF001OZP', 'released'), ('ENCFF001OZQ', 'released'), ('ENCFF001OZR', 'released'), ('ENCFF001OZS', 'released'), ('ENCFF001OZT', 'released'), ('ENCFF001OZU', 'released'), ('ENCFF001OZV', 'released'), ('ENCFF001OZW', 'released'), ('ENCFF001OZX', 'released'), ('ENCFF001OZY', 'released'), ('ENCFF001OZZ', 'released'), ('ENCFF001PAA', 'released'), ('ENCFF001PAB', 'released'), ('ENCFF001PAC', 'released'), ('ENCFF001PAD', 'released'), ('ENCFF001PAE', 'released'), ('ENCFF001PAF', 'released'), ('ENCFF001PAG', 'released'), ('ENCFF001PAH', 'released'), ('ENCFF001PAI', 'released'), ('ENCFF001PAJ', 'released'), ('ENCFF001PAK', 'released'), ('ENCFF001PAL', 'released')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001QGL', 'matching_filters': False},
       {'weakly_filtered_data': [('ENCFF044CWG', 'released')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001KKV', 'matching_filters': False},
       {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF000ZVN', 'matching_filters': True},
       {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF000ZVR', 'matching_filters': True},
       {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001QFM', 'matching_filters': True},
       {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF000ZVX', 'matching_filters': True},
       {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF000ZVM', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001NCF', 'released'), ('ENCFF001NCG', 'revoked'), ('ENCFF001NCH', 'released'), ('ENCFF001NCI', 'revoked'), ('ENCFF001NUT', 'revoked')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001NCJ', 'matching_filters': False},
       {'weakly_filtered_data': [('ENCFF786ODW', 'released')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001LAD', 'matching_filters': False}], dtype=object)

In [172]:

    

print(*['https://encodeproject.org/{}'.format(r['accession']) for r in no_derived_found_replaced if (r['weakly_filtered_data'])], sep='\n')


    

    




https://encodeproject.org/ENCFF001NRC
https://encodeproject.org/ENCFF001NRA
https://encodeproject.org/ENCFF001QGL
https://encodeproject.org/ENCFF001KKV
https://encodeproject.org/ENCFF001NCJ
https://encodeproject.org/ENCFF001LAD

In [171]:

    

print(*['https://encodeproject.org/{}'.format(r['accession']) for r in no_derived_found_replaced if not r['weakly_filtered_data']], sep='\n')


    

    




https://encodeproject.org/ENCFF000ZVG
https://encodeproject.org/ENCFF001DYQ
https://encodeproject.org/ENCFF000ZVN
https://encodeproject.org/ENCFF000ZVR
https://encodeproject.org/ENCFF001QFM
https://encodeproject.org/ENCFF000ZVX
https://encodeproject.org/ENCFF000ZVM

In [174]:

    

d[[b for b in c]]


    

    
Out[174]:





array([ {'weakly_filtered_data': [('ENCFF001QDZ', 'released')], 'derived_from': ['/files/ENCFF001QDZ/'], 'filtered_data': [('ENCFF001QDZ', 'released')], 'accession': 'ENCFF001QFI', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001LJN', 'released')], 'derived_from': ['/files/ENCFF001LJN/'], 'filtered_data': [('ENCFF001LJN', 'released')], 'accession': 'ENCFF001JZP', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001NYS', 'released')], 'derived_from': ['/files/ENCFF001NYS/'], 'filtered_data': [('ENCFF001NYS', 'released')], 'accession': 'ENCFF001NYN', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HWK', 'released')], 'derived_from': ['/files/ENCFF001HWK/'], 'filtered_data': [('ENCFF001HWK', 'released')], 'accession': 'ENCFF001GAZ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HVV', 'released')], 'derived_from': ['/files/ENCFF001HVV/'], 'filtered_data': [('ENCFF001HVV', 'released')], 'accession': 'ENCFF001GAP', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KWE', 'released'), ('ENCFF001KWL', 'revoked')], 'derived_from': ['/files/ENCFF001KWE/'], 'filtered_data': [('ENCFF001KWE', 'released')], 'accession': 'ENCFF001LRA', 'matching_filters': False},
       {'weakly_filtered_data': [('ENCFF001MMU', 'released')], 'derived_from': ['/files/ENCFF001MMU/'], 'filtered_data': [('ENCFF001MMU', 'released')], 'accession': 'ENCFF001LYO', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000TFM', 'released')], 'derived_from': ['/files/ENCFF000TFM/'], 'filtered_data': [('ENCFF000TFM', 'released')], 'accession': 'ENCFF000TFN', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HUV', 'released')], 'derived_from': ['/files/ENCFF001HUV/'], 'filtered_data': [('ENCFF001HUV', 'released')], 'accession': 'ENCFF001FYJ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001LLL', 'revoked'), ('ENCFF001LLM', 'released')], 'derived_from': ['/files/ENCFF001LLM/'], 'filtered_data': [('ENCFF001LLM', 'released')], 'accession': 'ENCFF001LLA', 'matching_filters': False},
       {'weakly_filtered_data': [('ENCFF001HKT', 'released')], 'derived_from': ['/files/ENCFF001HKT/'], 'filtered_data': [('ENCFF001HKT', 'released')], 'accession': 'ENCFF001FHE', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000UUW', 'released')], 'derived_from': ['/files/ENCFF000UUW/'], 'filtered_data': [('ENCFF000UUW', 'released')], 'accession': 'ENCFF000UTZ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HUM', 'released')], 'derived_from': ['/files/ENCFF001HUM/'], 'filtered_data': [('ENCFF001HUM', 'released')], 'accession': 'ENCFF001FXY', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HWY', 'released')], 'derived_from': ['/files/ENCFF001HWY/'], 'filtered_data': [('ENCFF001HWY', 'released')], 'accession': 'ENCFF001GCA', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KOQ', 'released')], 'derived_from': ['/files/ENCFF001KOQ/'], 'filtered_data': [('ENCFF001KOQ', 'released')], 'accession': 'ENCFF001LNO', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KSJ', 'released')], 'derived_from': ['/files/ENCFF001KSJ/'], 'filtered_data': [('ENCFF001KSJ', 'released')], 'accession': 'ENCFF001LPP', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KOE', 'released')], 'derived_from': ['/files/ENCFF001KOE/'], 'filtered_data': [('ENCFF001KOE', 'released')], 'accession': 'ENCFF001LMZ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001JYM', 'released')], 'derived_from': ['/files/ENCFF001JYM/'], 'filtered_data': [('ENCFF001JYM', 'released')], 'accession': 'ENCFF001LGB', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000VHM', 'released')], 'derived_from': ['/files/ENCFF000VHM/'], 'filtered_data': [('ENCFF000VHM', 'released')], 'accession': 'ENCFF000ZLH', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001NYW', 'released')], 'derived_from': ['/files/ENCFF001NYW/'], 'filtered_data': [('ENCFF001NYW', 'released')], 'accession': 'ENCFF001NYO', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001GZT', 'released')], 'derived_from': ['/files/ENCFF001GZT/'], 'filtered_data': [('ENCFF001GZT', 'released')], 'accession': 'ENCFF001EQK', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KEX', 'released')], 'derived_from': ['/files/ENCFF001KEX/'], 'filtered_data': [('ENCFF001KEX', 'released')], 'accession': 'ENCFF001LIU', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KXE', 'released')], 'derived_from': ['/files/ENCFF001KXE/'], 'filtered_data': [('ENCFF001KXE', 'released')], 'accession': 'ENCFF001LRR', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HBK', 'released')], 'derived_from': ['/files/ENCFF001HBK/'], 'filtered_data': [('ENCFF001HBK', 'released')], 'accession': 'ENCFF001EVA', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KXN', 'released')], 'derived_from': ['/files/ENCFF001KXN/'], 'filtered_data': [('ENCFF001KXN', 'released')], 'accession': 'ENCFF001LRS', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HRU', 'released')], 'derived_from': ['/files/ENCFF001HRU/'], 'filtered_data': [('ENCFF001HRU', 'released')], 'accession': 'ENCFF001FQY', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HVB', 'released')], 'derived_from': ['/files/ENCFF001HVB/'], 'filtered_data': [('ENCFF001HVB', 'released')], 'accession': 'ENCFF001FYU', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KSH', 'released')], 'derived_from': ['/files/ENCFF001KSH/'], 'filtered_data': [('ENCFF001KSH', 'released')], 'accession': 'ENCFF001LPO', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HAY', 'released')], 'derived_from': ['/files/ENCFF001HAY/'], 'filtered_data': [('ENCFF001HAY', 'released')], 'accession': 'ENCFF001ETT', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HID', 'released')], 'derived_from': ['/files/ENCFF001HID/'], 'filtered_data': [('ENCFF001HID', 'released')], 'accession': 'ENCFF001EYA', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001MUT', 'released')], 'derived_from': ['/files/ENCFF001MUT/'], 'filtered_data': [('ENCFF001MUT', 'released')], 'accession': 'ENCFF001MFD', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HSV', 'released')], 'derived_from': ['/files/ENCFF001HSV/'], 'filtered_data': [('ENCFF001HSV', 'released')], 'accession': 'ENCFF001FSS', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000PYX', 'released')], 'derived_from': ['/files/ENCFF000PYX/'], 'filtered_data': [('ENCFF000PYX', 'released')], 'accession': 'ENCFF000PYV', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000VDU', 'released')], 'derived_from': ['/files/ENCFF000VDU/'], 'filtered_data': [('ENCFF000VDU', 'released')], 'accession': 'ENCFF000VEJ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000VDN', 'released')], 'derived_from': ['/files/ENCFF000VDN/'], 'filtered_data': [('ENCFF000VDN', 'released')], 'accession': 'ENCFF000VEB', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HII', 'released')], 'derived_from': ['/files/ENCFF001HII/'], 'filtered_data': [('ENCFF001HII', 'released')], 'accession': 'ENCFF001FEN', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HIK', 'released')], 'derived_from': ['/files/ENCFF001HIK/'], 'filtered_data': [('ENCFF001HIK', 'released')], 'accession': 'ENCFF001FEQ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HNS', 'released')], 'derived_from': ['/files/ENCFF001HNS/'], 'filtered_data': [('ENCFF001HNS', 'released')], 'accession': 'ENCFF001FKX', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000QKK', 'released')], 'derived_from': ['/files/ENCFF000QKK/'], 'filtered_data': [('ENCFF000QKK', 'released')], 'accession': 'ENCFF000QJL', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000TVV', 'released')], 'derived_from': ['/files/ENCFF000TVV/'], 'filtered_data': [('ENCFF000TVV', 'released')], 'accession': 'ENCFF000TUA', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HLJ', 'released')], 'derived_from': ['/files/ENCFF001HLJ/'], 'filtered_data': [('ENCFF001HLJ', 'released')], 'accession': 'ENCFF001FHP', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HMS', 'released')], 'derived_from': ['/files/ENCFF001HMS/'], 'filtered_data': [('ENCFF001HMS', 'released')], 'accession': 'ENCFF001FJC', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001GWE', 'released')], 'derived_from': ['/files/ENCFF001GWE/'], 'filtered_data': [('ENCFF001GWE', 'released')], 'accession': 'ENCFF001ELY', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KIL', 'released')], 'derived_from': ['/files/ENCFF001KIL/'], 'filtered_data': [('ENCFF001KIL', 'released')], 'accession': 'ENCFF001LJT', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KKE', 'released')], 'derived_from': ['/files/ENCFF001KKE/'], 'filtered_data': [('ENCFF001KKE', 'released')], 'accession': 'ENCFF001KID', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001MLY', 'released')], 'derived_from': ['/files/ENCFF001MLY/'], 'filtered_data': [('ENCFF001MLY', 'released')], 'accession': 'ENCFF001LWM', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KRK', 'released')], 'derived_from': ['/files/ENCFF001KRK/'], 'filtered_data': [('ENCFF001KRK', 'released')], 'accession': 'ENCFF001LOY', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KKE', 'released')], 'derived_from': ['/files/ENCFF001KKE/'], 'filtered_data': [('ENCFF001KKE', 'released')], 'accession': 'ENCFF001LKV', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KKF', 'released')], 'derived_from': ['/files/ENCFF001KKF/'], 'filtered_data': [('ENCFF001KKF', 'released')], 'accession': 'ENCFF001LKW', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HTK', 'released')], 'derived_from': ['/files/ENCFF001HTK/'], 'filtered_data': [('ENCFF001HTK', 'released')], 'accession': 'ENCFF001FTF', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001JZE', 'released')], 'derived_from': ['/files/ENCFF001JZE/'], 'filtered_data': [('ENCFF001JZE', 'released')], 'accession': 'ENCFF001LGR', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000OCW', 'released')], 'derived_from': ['/files/ENCFF000OCW/'], 'filtered_data': [('ENCFF000OCW', 'released')], 'accession': 'ENCFF000OCR', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000QKJ', 'released')], 'derived_from': ['/files/ENCFF000QKJ/'], 'filtered_data': [('ENCFF000QKJ', 'released')], 'accession': 'ENCFF000QJM', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001IEG', 'released'), ('ENCFF001IEH', 'released'), ('ENCFF001IEI', 'released')], 'derived_from': ['/files/ENCFF001IEG/', '/files/ENCFF001IEH/', '/files/ENCFF001IEI/'], 'filtered_data': [('ENCFF001IEG', 'released'), ('ENCFF001IEH', 'released'), ('ENCFF001IEI', 'released')], 'accession': 'ENCFF001IBT', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001GZF', 'released')], 'derived_from': ['/files/ENCFF001GZF/'], 'filtered_data': [('ENCFF001GZF', 'released')], 'accession': 'ENCFF001EPX', 'matching_filters': True},
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       {'weakly_filtered_data': [('ENCFF001HME', 'released')], 'derived_from': ['/files/ENCFF001HME/'], 'filtered_data': [('ENCFF001HME', 'released')], 'accession': 'ENCFF001FIQ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HLR', 'released')], 'derived_from': ['/files/ENCFF001HLR/'], 'filtered_data': [('ENCFF001HLR', 'released')], 'accession': 'ENCFF001FID', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HTT', 'released')], 'derived_from': ['/files/ENCFF001HTT/'], 'filtered_data': [('ENCFF001HTT', 'released')], 'accession': 'ENCFF001FWY', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001IFD', 'released')], 'derived_from': ['/files/ENCFF001IFD/'], 'filtered_data': [('ENCFF001IFD', 'released')], 'accession': 'ENCFF001IBX', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001IEY', 'released')], 'derived_from': ['/files/ENCFF001IEY/'], 'filtered_data': [('ENCFF001IEY', 'released')], 'accession': 'ENCFF001IBW', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001IDS', 'released'), ('ENCFF001IDT', 'released'), ('ENCFF001IDU', 'released'), ('ENCFF001IDV', 'released')], 'derived_from': ['/files/ENCFF001IDS/', '/files/ENCFF001IDT/', '/files/ENCFF001IDU/', '/files/ENCFF001IDV/'], 'filtered_data': [('ENCFF001IDS', 'released'), ('ENCFF001IDT', 'released'), ('ENCFF001IDU', 'released'), ('ENCFF001IDV', 'released')], 'accession': 'ENCFF001IBA', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HXN', 'released')], 'derived_from': ['/files/ENCFF001HXN/'], 'filtered_data': [('ENCFF001HXN', 'released')], 'accession': 'ENCFF001GDT', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001JYN', 'released')], 'derived_from': ['/files/ENCFF001JYN/'], 'filtered_data': [('ENCFF001JYN', 'released')], 'accession': 'ENCFF001LGA', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000UVZ', 'released'), ('ENCFF000UWA', 'released')], 'derived_from': ['/files/ENCFF000UVZ/', '/files/ENCFF000UWA/'], 'filtered_data': [('ENCFF000UVZ', 'released'), ('ENCFF000UWA', 'released')], 'accession': 'ENCFF000UVQ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HWJ', 'released')], 'derived_from': ['/files/ENCFF001HWJ/'], 'filtered_data': [('ENCFF001HWJ', 'released')], 'accession': 'ENCFF001GBM', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000TOI', 'released')], 'derived_from': ['/files/ENCFF000TOI/'], 'filtered_data': [('ENCFF000TOI', 'released')], 'accession': 'ENCFF000TGK', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KEU', 'released')], 'derived_from': ['/files/ENCFF001KEU/'], 'filtered_data': [('ENCFF001KEU', 'released')], 'accession': 'ENCFF001LIT', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000UJF', 'released')], 'derived_from': ['/files/ENCFF000UJF/'], 'filtered_data': [('ENCFF000UJF', 'released')], 'accession': 'ENCFF000UIL', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001NYA', 'released')], 'derived_from': ['/files/ENCFF001NYA/'], 'filtered_data': [('ENCFF001NYA', 'released')], 'accession': 'ENCFF001NXA', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HOY', 'released')], 'derived_from': ['/files/ENCFF001HOY/'], 'filtered_data': [('ENCFF001HOY', 'released')], 'accession': 'ENCFF001FNA', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HUC', 'released')], 'derived_from': ['/files/ENCFF001HUC/'], 'filtered_data': [('ENCFF001HUC', 'released')], 'accession': 'ENCFF001FXK', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HJJ', 'released')], 'derived_from': ['/files/ENCFF001HJJ/'], 'filtered_data': [('ENCFF001HJJ', 'released')], 'accession': 'ENCFF001FFH', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000UTV', 'released')], 'derived_from': ['/files/ENCFF000UTV/'], 'filtered_data': [('ENCFF000UTV', 'released')], 'accession': 'ENCFF000UTB', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001OBJ', 'released')], 'derived_from': ['/files/ENCFF001OBJ/'], 'filtered_data': [('ENCFF001OBJ', 'released')], 'accession': 'ENCFF001OAG', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF000UNE', 'released'), ('ENCFF000UNF', 'released')], 'derived_from': ['/files/ENCFF000UNE/', '/files/ENCFF000UNF/'], 'filtered_data': [('ENCFF000UNE', 'released'), ('ENCFF000UNF', 'released')], 'accession': 'ENCFF000UMW', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001NQA', 'released')], 'derived_from': ['/files/ENCFF001NQA/'], 'filtered_data': [('ENCFF001NQA', 'released')], 'accession': 'ENCFF001NPL', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KLI', 'released'), ('ENCFF001KMA', 'revoked')], 'derived_from': ['/files/ENCFF001KLI/'], 'filtered_data': [('ENCFF001KLI', 'released')], 'accession': 'ENCFF001LLX', 'matching_filters': False},
       {'weakly_filtered_data': [('ENCFF001KNY', 'released')], 'derived_from': ['/files/ENCFF001KNY/'], 'filtered_data': [('ENCFF001KNY', 'released')], 'accession': 'ENCFF001LMU', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KUJ', 'released')], 'derived_from': ['/files/ENCFF001KUJ/'], 'filtered_data': [('ENCFF001KUJ', 'released')], 'accession': 'ENCFF001LQE', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KRJ', 'released')], 'derived_from': ['/files/ENCFF001KRJ/'], 'filtered_data': [('ENCFF001KRJ', 'released')], 'accession': 'ENCFF001LOW', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KPS', 'released')], 'derived_from': ['/files/ENCFF001KPS/'], 'filtered_data': [('ENCFF001KPS', 'released')], 'accession': 'ENCFF001LOG', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HAV', 'released')], 'derived_from': ['/files/ENCFF001HAV/'], 'filtered_data': [('ENCFF001HAV', 'released')], 'accession': 'ENCFF001ETK', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KVR', 'released')], 'derived_from': ['/files/ENCFF001KVR/'], 'filtered_data': [('ENCFF001KVR', 'released')], 'accession': 'ENCFF001LQZ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001MPG', 'released')], 'derived_from': ['/files/ENCFF001MPG/'], 'filtered_data': [('ENCFF001MPG', 'released')], 'accession': 'ENCFF001MAZ', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001KOV', 'released')], 'derived_from': ['/files/ENCFF001KOV/'], 'filtered_data': [('ENCFF001KOV', 'released')], 'accession': 'ENCFF001LNP', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001HHU', 'released')], 'derived_from': ['/files/ENCFF001HHU/'], 'filtered_data': [('ENCFF001HHU', 'released')], 'accession': 'ENCFF001EWU', 'matching_filters': True},
       {'weakly_filtered_data': [('ENCFF001LAO', 'released'), ('ENCFF001LBB', 'revoked')], 'derived_from': ['/files/ENCFF001LAO/'], 'filtered_data': [('ENCFF001LAO', 'released')], 'accession': 'ENCFF001LTE', 'matching_filters': False}], dtype=object)

In [79]:

    

rndf_files, rndf_experiments, rndf_derived_from_match, rndf_new_derived_from_data = main(replaced_no_derived_from)
sum(rndf_derived_from_match), rndf_new_derived_from_data


    

    




No derived_from found:  ENCFF001LLA replaced
No derived_from found:  ENCFF001DYQ replaced
No derived_from found:  ENCFF001NRC replaced
No derived_from found:  ENCFF000SIJ replaced
No derived_from found:  ENCFF001NRA replaced
No derived_from found:  ENCFF000OCR replaced
No derived_from found:  ENCFF001QFM replaced
No derived_from found:  ENCFF000OSC replaced
No derived_from found:  ENCFF001KKV replaced
No derived_from found:  ENCFF000ZVN replaced
No derived_from found:  ENCFF000ZVR replaced
No derived_from found:  ENCFF000SIG replaced
No derived_from found:  ENCFF001QGL replaced
No derived_from found:  ENCFF000ZVM replaced
No derived_from found:  ENCFF000ZNQ replaced
No derived_from found:  ENCFF000ZVG replaced
No derived_from found:  ENCFF000ZLF replaced
No derived_from found:  ENCFF000ZTB replaced
No derived_from found:  ENCFF000ZJM replaced
No derived_from found:  ENCFF000ZJN replaced
No derived_from found:  ENCFF000ZVX replaced
No derived_from found:  ENCFF000ZLH replaced
No derived_from found:  ENCFF000YQW replaced
No derived_from found:  ENCFF001LLF replaced
No derived_from found:  ENCFF001LAD replaced






    
Out[79]:





(177,
 array([ {'weakly_filtered_data': [('ENCFF001QDZ', 'released')], 'derived_from': ['/files/ENCFF001QDZ/'], 'filtered_data': [('ENCFF001QDZ', 'released')], 'accession': 'ENCFF001QFI', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001JZZ', 'released')], 'derived_from': ['/files/ENCFF001JZZ/'], 'filtered_data': [('ENCFF001JZZ', 'released')], 'accession': 'ENCFF001JZP', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001NYS', 'released')], 'derived_from': ['/files/ENCFF001NYS/'], 'filtered_data': [('ENCFF001NYS', 'released')], 'accession': 'ENCFF001NYN', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HWK', 'released')], 'derived_from': ['/files/ENCFF001HWK/'], 'filtered_data': [('ENCFF001HWK', 'released')], 'accession': 'ENCFF001GAZ', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HVV', 'released')], 'derived_from': ['/files/ENCFF001HVV/'], 'filtered_data': [('ENCFF001HVV', 'released')], 'accession': 'ENCFF001GAP', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KWE', 'released'), ('ENCFF001KWL', 'revoked')], 'derived_from': ['/files/ENCFF001KWE/'], 'filtered_data': [('ENCFF001KWE', 'released')], 'accession': 'ENCFF001LRA', 'matching_filters': False},
        {'weakly_filtered_data': [('ENCFF001MMU', 'released')], 'derived_from': ['/files/ENCFF001MMU/'], 'filtered_data': [('ENCFF001MMU', 'released')], 'accession': 'ENCFF001LYO', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000TFM', 'released')], 'derived_from': ['/files/ENCFF000TFM/'], 'filtered_data': [('ENCFF000TFM', 'released')], 'accession': 'ENCFF000TFN', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HUV', 'released')], 'derived_from': ['/files/ENCFF001HUV/'], 'filtered_data': [('ENCFF001HUV', 'released')], 'accession': 'ENCFF001FYJ', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001LLK', 'revoked')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001LLA', 'matching_filters': False},
        {'weakly_filtered_data': [('ENCFF001IEA', 'released'), ('ENCFF001IEB', 'released'), ('ENCFF001IEC', 'released'), ('ENCFF001IED', 'released'), ('ENCFF001IEE', 'released')], 'derived_from': ['/files/ENCFF001IEA/', '/files/ENCFF001IEB/', '/files/ENCFF001IEC/', '/files/ENCFF001IED/', '/files/ENCFF001IEE/'], 'filtered_data': [('ENCFF001IEA', 'released'), ('ENCFF001IEB', 'released'), ('ENCFF001IEC', 'released'), ('ENCFF001IED', 'released'), ('ENCFF001IEE', 'released')], 'accession': 'ENCFF001IBO', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001BXT', 'revoked'), ('ENCFF001DZB', 'revoked'), ('ENCFF001DZD', 'revoked'), ('ENCFF001DZE', 'revoked'), ('ENCFF001DZF', 'revoked'), ('ENCFF001EAE', 'revoked')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001DYQ', 'matching_filters': False},
        {'weakly_filtered_data': [('ENCFF001KDF', 'released')], 'derived_from': ['/files/ENCFF001KDF/'], 'filtered_data': [('ENCFF001KDF', 'released')], 'accession': 'ENCFF001LID', 'matching_filters': True},
        {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001NRC', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000VDX', 'released')], 'derived_from': ['/files/ENCFF000VDX/'], 'filtered_data': [('ENCFF000VDX', 'released')], 'accession': 'ENCFF000VEN', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000VDY', 'released')], 'derived_from': ['/files/ENCFF000VDY/'], 'filtered_data': [('ENCFF000VDY', 'released')], 'accession': 'ENCFF000VEO', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HIS', 'released')], 'derived_from': ['/files/ENCFF001HIS/'], 'filtered_data': [('ENCFF001HIS', 'released')], 'accession': 'ENCFF001FEK', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HIR', 'released')], 'derived_from': ['/files/ENCFF001HIR/'], 'filtered_data': [('ENCFF001HIR', 'released')], 'accession': 'ENCFF001FES', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HON', 'released')], 'derived_from': ['/files/ENCFF001HON/'], 'filtered_data': [('ENCFF001HON', 'released')], 'accession': 'ENCFF001FMM', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HSI', 'released')], 'derived_from': ['/files/ENCFF001HSI/'], 'filtered_data': [('ENCFF001HSI', 'released')], 'accession': 'ENCFF001FRL', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HVB', 'released')], 'derived_from': ['/files/ENCFF001HVB/'], 'filtered_data': [('ENCFF001HVB', 'released')], 'accession': 'ENCFF001FYU', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HVP', 'released')], 'derived_from': ['/files/ENCFF001HVP/'], 'filtered_data': [('ENCFF001HVP', 'released')], 'accession': 'ENCFF001FZF', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HPI', 'released')], 'derived_from': ['/files/ENCFF001HPI/'], 'filtered_data': [('ENCFF001HPI', 'released')], 'accession': 'ENCFF001FNL', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HRU', 'released')], 'derived_from': ['/files/ENCFF001HRU/'], 'filtered_data': [('ENCFF001HRU', 'released')], 'accession': 'ENCFF001FQY', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001MUW', 'released')], 'derived_from': ['/files/ENCFF001MUW/'], 'filtered_data': [('ENCFF001MUW', 'released')], 'accession': 'ENCFF001MFE', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001NYE', 'released')], 'derived_from': ['/files/ENCFF001NYE/'], 'filtered_data': [('ENCFF001NYE', 'released')], 'accession': 'ENCFF001NWW', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001NYW', 'released')], 'derived_from': ['/files/ENCFF001NYW/'], 'filtered_data': [('ENCFF001NYW', 'released')], 'accession': 'ENCFF001NYO', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HPU', 'released')], 'derived_from': ['/files/ENCFF001HPU/'], 'filtered_data': [('ENCFF001HPU', 'released')], 'accession': 'ENCFF001FOD', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HXF', 'released')], 'derived_from': ['/files/ENCFF001HXF/'], 'filtered_data': [('ENCFF001HXF', 'released')], 'accession': 'ENCFF001GDJ', 'matching_filters': True},
        {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF000SIJ', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HII', 'released')], 'derived_from': ['/files/ENCFF001HII/'], 'filtered_data': [('ENCFF001HII', 'released')], 'accession': 'ENCFF001FEN', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HIK', 'released')], 'derived_from': ['/files/ENCFF001HIK/'], 'filtered_data': [('ENCFF001HIK', 'released')], 'accession': 'ENCFF001FEQ', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HNS', 'released')], 'derived_from': ['/files/ENCFF001HNS/'], 'filtered_data': [('ENCFF001HNS', 'released')], 'accession': 'ENCFF001FKX', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000TOK', 'released')], 'derived_from': ['/files/ENCFF000TOK/'], 'filtered_data': [('ENCFF000TOK', 'released')], 'accession': 'ENCFF000TGJ', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000TOI', 'released')], 'derived_from': ['/files/ENCFF000TOI/'], 'filtered_data': [('ENCFF000TOI', 'released')], 'accession': 'ENCFF000TGK', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000TFQ', 'released')], 'derived_from': ['/files/ENCFF000TFQ/'], 'filtered_data': [('ENCFF000TFQ', 'released')], 'accession': 'ENCFF000TFU', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HXN', 'released')], 'derived_from': ['/files/ENCFF001HXN/'], 'filtered_data': [('ENCFF001HXN', 'released')], 'accession': 'ENCFF001GDT', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HYX', 'released')], 'derived_from': ['/files/ENCFF001HYX/'], 'filtered_data': [('ENCFF001HYX', 'released')], 'accession': 'ENCFF001GHB', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HZB', 'released')], 'derived_from': ['/files/ENCFF001HZB/'], 'filtered_data': [('ENCFF001HZB', 'released')], 'accession': 'ENCFF001GHC', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001LHN', 'released')], 'derived_from': ['/files/ENCFF001LHN/'], 'filtered_data': [('ENCFF001LHN', 'released')], 'accession': 'ENCFF001LHF', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000QKK', 'released')], 'derived_from': ['/files/ENCFF000QKK/'], 'filtered_data': [('ENCFF000QKK', 'released')], 'accession': 'ENCFF000QJL', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000TVV', 'released')], 'derived_from': ['/files/ENCFF000TVV/'], 'filtered_data': [('ENCFF000TVV', 'released')], 'accession': 'ENCFF000TUA', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HLJ', 'released')], 'derived_from': ['/files/ENCFF001HLJ/'], 'filtered_data': [('ENCFF001HLJ', 'released')], 'accession': 'ENCFF001FHP', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HMS', 'released')], 'derived_from': ['/files/ENCFF001HMS/'], 'filtered_data': [('ENCFF001HMS', 'released')], 'accession': 'ENCFF001FJC', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001GWE', 'released')], 'derived_from': ['/files/ENCFF001GWE/'], 'filtered_data': [('ENCFF001GWE', 'released')], 'accession': 'ENCFF001ELY', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KIL', 'released')], 'derived_from': ['/files/ENCFF001KIL/'], 'filtered_data': [('ENCFF001KIL', 'released')], 'accession': 'ENCFF001LJT', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KIM', 'released')], 'derived_from': ['/files/ENCFF001KIM/'], 'filtered_data': [('ENCFF001KIM', 'released')], 'accession': 'ENCFF001KID', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001MLY', 'released')], 'derived_from': ['/files/ENCFF001MLY/'], 'filtered_data': [('ENCFF001MLY', 'released')], 'accession': 'ENCFF001LWM', 'matching_filters': True},
        {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001NRA', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KRK', 'released')], 'derived_from': ['/files/ENCFF001KRK/'], 'filtered_data': [('ENCFF001KRK', 'released')], 'accession': 'ENCFF001LOY', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KKE', 'released')], 'derived_from': ['/files/ENCFF001KKE/'], 'filtered_data': [('ENCFF001KKE', 'released')], 'accession': 'ENCFF001LKV', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KKF', 'released')], 'derived_from': ['/files/ENCFF001KKF/'], 'filtered_data': [('ENCFF001KKF', 'released')], 'accession': 'ENCFF001LKW', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HTK', 'released')], 'derived_from': ['/files/ENCFF001HTK/'], 'filtered_data': [('ENCFF001HTK', 'released')], 'accession': 'ENCFF001FTF', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001JZE', 'released')], 'derived_from': ['/files/ENCFF001JZE/'], 'filtered_data': [('ENCFF001JZE', 'released')], 'accession': 'ENCFF001LGR', 'matching_filters': True},
        {'weakly_filtered_data': [], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF000OCR', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000QKJ', 'released')], 'derived_from': ['/files/ENCFF000QKJ/'], 'filtered_data': [('ENCFF000QKJ', 'released')], 'accession': 'ENCFF000QJM', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001IEG', 'released'), ('ENCFF001IEH', 'released'), ('ENCFF001IEI', 'released')], 'derived_from': ['/files/ENCFF001IEG/', '/files/ENCFF001IEH/', '/files/ENCFF001IEI/'], 'filtered_data': [('ENCFF001IEG', 'released'), ('ENCFF001IEH', 'released'), ('ENCFF001IEI', 'released')], 'accession': 'ENCFF001IBT', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001GZF', 'released')], 'derived_from': ['/files/ENCFF001GZF/'], 'filtered_data': [('ENCFF001GZF', 'released')], 'accession': 'ENCFF001EPX', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KNX', 'released')], 'derived_from': ['/files/ENCFF001KNX/'], 'filtered_data': [('ENCFF001KNX', 'released')], 'accession': 'ENCFF001LMT', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001MLS', 'released')], 'derived_from': ['/files/ENCFF001MLS/'], 'filtered_data': [('ENCFF001MLS', 'released')], 'accession': 'ENCFF001LWK', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KLI', 'released'), ('ENCFF001KMA', 'revoked')], 'derived_from': ['/files/ENCFF001KLI/'], 'filtered_data': [('ENCFF001KLI', 'released')], 'accession': 'ENCFF001LLW', 'matching_filters': False},
        {'weakly_filtered_data': [('ENCFF001GXZ', 'released')], 'derived_from': ['/files/ENCFF001GXZ/'], 'filtered_data': [('ENCFF001GXZ', 'released')], 'accession': 'ENCFF001EOX', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KKE', 'released')], 'derived_from': ['/files/ENCFF001KKE/'], 'filtered_data': [('ENCFF001KKE', 'released')], 'accession': 'ENCFF001LKU', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KSJ', 'released')], 'derived_from': ['/files/ENCFF001KSJ/'], 'filtered_data': [('ENCFF001KSJ', 'released')], 'accession': 'ENCFF001LPP', 'matching_filters': True},
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        {'weakly_filtered_data': [('ENCFF001KLI', 'released'), ('ENCFF001KMA', 'revoked')], 'derived_from': ['/files/ENCFF001KLI/'], 'filtered_data': [('ENCFF001KLI', 'released')], 'accession': 'ENCFF001LLX', 'matching_filters': False},
        {'weakly_filtered_data': [('ENCFF001HRI', 'released')], 'derived_from': ['/files/ENCFF001HRI/'], 'filtered_data': [('ENCFF001HRI', 'released')], 'accession': 'ENCFF001FPQ', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001JYN', 'released')], 'derived_from': ['/files/ENCFF001JYN/'], 'filtered_data': [('ENCFF001JYN', 'released')], 'accession': 'ENCFF001LGA', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001LGS', 'released')], 'derived_from': ['/files/ENCFF001LGS/'], 'filtered_data': [('ENCFF001LGS', 'released')], 'accession': 'ENCFF001LGD', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KIM', 'released')], 'derived_from': ['/files/ENCFF001KIM/'], 'filtered_data': [('ENCFF001KIM', 'released')], 'accession': 'ENCFF001LJS', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KNY', 'released')], 'derived_from': ['/files/ENCFF001KNY/'], 'filtered_data': [('ENCFF001KNY', 'released')], 'accession': 'ENCFF001LMU', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KOV', 'released')], 'derived_from': ['/files/ENCFF001KOV/'], 'filtered_data': [('ENCFF001KOV', 'released')], 'accession': 'ENCFF001LNP', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KEU', 'released')], 'derived_from': ['/files/ENCFF001KEU/'], 'filtered_data': [('ENCFF001KEU', 'released')], 'accession': 'ENCFF001LIT', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000UJF', 'released')], 'derived_from': ['/files/ENCFF000UJF/'], 'filtered_data': [('ENCFF000UJF', 'released')], 'accession': 'ENCFF000UIL', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF786ODW', 'released')], 'derived_from': [], 'filtered_data': [], 'accession': 'ENCFF001LAD', 'matching_filters': False},
        {'weakly_filtered_data': [('ENCFF001NYA', 'released')], 'derived_from': ['/files/ENCFF001NYA/'], 'filtered_data': [('ENCFF001NYA', 'released')], 'accession': 'ENCFF001NXA', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HOY', 'released')], 'derived_from': ['/files/ENCFF001HOY/'], 'filtered_data': [('ENCFF001HOY', 'released')], 'accession': 'ENCFF001FNA', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HUC', 'released')], 'derived_from': ['/files/ENCFF001HUC/'], 'filtered_data': [('ENCFF001HUC', 'released')], 'accession': 'ENCFF001FXK', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HJJ', 'released')], 'derived_from': ['/files/ENCFF001HJJ/'], 'filtered_data': [('ENCFF001HJJ', 'released')], 'accession': 'ENCFF001FFH', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KRJ', 'released')], 'derived_from': ['/files/ENCFF001KRJ/'], 'filtered_data': [('ENCFF001KRJ', 'released')], 'accession': 'ENCFF001LOW', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KUJ', 'released')], 'derived_from': ['/files/ENCFF001KUJ/'], 'filtered_data': [('ENCFF001KUJ', 'released')], 'accession': 'ENCFF001LQE', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HAV', 'released')], 'derived_from': ['/files/ENCFF001HAV/'], 'filtered_data': [('ENCFF001HAV', 'released')], 'accession': 'ENCFF001ETK', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KPS', 'released')], 'derived_from': ['/files/ENCFF001KPS/'], 'filtered_data': [('ENCFF001KPS', 'released')], 'accession': 'ENCFF001LOG', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001LAO', 'released'), ('ENCFF001LBB', 'revoked')], 'derived_from': ['/files/ENCFF001LAO/'], 'filtered_data': [('ENCFF001LAO', 'released')], 'accession': 'ENCFF001LTE', 'matching_filters': False},
        {'weakly_filtered_data': [('ENCFF001HHU', 'released')], 'derived_from': ['/files/ENCFF001HHU/'], 'filtered_data': [('ENCFF001HHU', 'released')], 'accession': 'ENCFF001EWU', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HDF', 'released')], 'derived_from': ['/files/ENCFF001HDF/'], 'filtered_data': [('ENCFF001HDF', 'released')], 'accession': 'ENCFF001EWE', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001KVR', 'released')], 'derived_from': ['/files/ENCFF001KVR/'], 'filtered_data': [('ENCFF001KVR', 'released')], 'accession': 'ENCFF001LQZ', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001HID', 'released')], 'derived_from': ['/files/ENCFF001HID/'], 'filtered_data': [('ENCFF001HID', 'released')], 'accession': 'ENCFF001EYA', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001NCF', 'released'), ('ENCFF001NCG', 'revoked'), ('ENCFF001NCH', 'released'), ('ENCFF001NCI', 'revoked'), ('ENCFF001NUT', 'revoked')], 'derived_from': ['/files/ENCFF001NCF/'], 'filtered_data': [('ENCFF001NCF', 'released')], 'accession': 'ENCFF001NCJ', 'matching_filters': False},
        {'weakly_filtered_data': [('ENCFF001IFD', 'released')], 'derived_from': ['/files/ENCFF001IFD/'], 'filtered_data': [('ENCFF001IFD', 'released')], 'accession': 'ENCFF001IBX', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001IDS', 'released'), ('ENCFF001IDT', 'released'), ('ENCFF001IDU', 'released'), ('ENCFF001IDV', 'released')], 'derived_from': ['/files/ENCFF001IDS/', '/files/ENCFF001IDT/', '/files/ENCFF001IDU/', '/files/ENCFF001IDV/'], 'filtered_data': [('ENCFF001IDS', 'released'), ('ENCFF001IDT', 'released'), ('ENCFF001IDU', 'released'), ('ENCFF001IDV', 'released')], 'accession': 'ENCFF001IBA', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF001IEY', 'released')], 'derived_from': ['/files/ENCFF001IEY/'], 'filtered_data': [('ENCFF001IEY', 'released')], 'accession': 'ENCFF001IBW', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000VDN', 'released')], 'derived_from': ['/files/ENCFF000VDN/'], 'filtered_data': [('ENCFF000VDN', 'released')], 'accession': 'ENCFF000VEB', 'matching_filters': True},
        {'weakly_filtered_data': [('ENCFF000VDU', 'released')], 'derived_from': ['/files/ENCFF000VDU/'], 'filtered_data': [('ENCFF000VDU', 'released')], 'accession': 'ENCFF000VEJ', 'matching_filters': True}], dtype=object))

In [ ]:

    




    

In [ ]:

    




    

In [ ]:

    




    

In [99]:

    

replacement_info = [(r['accession'], get_replacement_accession(r['accession'])) for r in replaced_no_derived_from]


    

In [102]:

    

rp_files, rp_experiments, rp_derived_from_match, rp_new_derived_from_data = main([r[1] for r in replacement_info])
rp_derived_from_match, rp_new_derived_from_data


    

    




Mismatch:  ENCFF001QDF archived 
Actual: ['/files/ENCFF001QDZ/'] 
Calculated: [] 

Mismatch:  ENCFF001HVW archived 
Actual: ['/files/ENCFF001HWK/'] 
Calculated: [] 

Mismatch:  ENCFF001HVM archived 
Actual: ['/files/ENCFF001HVV/'] 
Calculated: [] 

Mismatch:  ENCFF000TEY archived 
Actual: ['/files/ENCFF000TFM/'] 
Calculated: [] 

Mismatch:  ENCFF001HUE archived 
Actual: ['/files/ENCFF001HUV/'] 
Calculated: [] 

Mismatch:  ENCFF001HKI archived 
Actual: ['/files/ENCFF001HKT/'] 
Calculated: [] 

Mismatch:  ENCFF000UUE archived 
Actual: ['/files/ENCFF000UUW/'] 
Calculated: [] 

Mismatch:  ENCFF001HUB archived 
Actual: ['/files/ENCFF001HUM/'] 
Calculated: [] 

Mismatch:  ENCFF001HWN archived 
Actual: ['/files/ENCFF001HWY/'] 
Calculated: [] 

No derived_from found:  ENCFF001NQN revoked
Mismatch:  ENCFF001HUO archived 
Actual: ['/files/ENCFF001HVB/'] 
Calculated: [] 

Mismatch:  ENCFF001HUZ archived 
Actual: ['/files/ENCFF001HVP/'] 
Calculated: [] 

Mismatch:  ENCFF001HOW archived 
Actual: ['/files/ENCFF001HPI/'] 
Calculated: [] 

Mismatch:  ENCFF001HRJ archived 
Actual: ['/files/ENCFF001HRU/'] 
Calculated: [] 

Mismatch:  ENCFF001HPJ archived 
Actual: ['/files/ENCFF001HPU/'] 
Calculated: [] 

Mismatch:  ENCFF001HWX archived 
Actual: ['/files/ENCFF001HXF/'] 
Calculated: [] 

Mismatch:  ENCFF000SIV archived 
Actual: ['/files/ENCFF000SJD/'] 
Calculated: [] 

Mismatch:  ENCFF001QCU archived 
Actual: ['/files/ENCFF001QDU/'] 
Calculated: [] 

Mismatch:  ENCFF001QDA archived 
Actual: ['/files/ENCFF001QEC/'] 
Calculated: [] 

Mismatch:  ENCFF001HIB archived 
Actual: ['/files/ENCFF001HII/'] 
Calculated: [] 

Mismatch:  ENCFF001HIE archived 
Actual: ['/files/ENCFF001HIK/'] 
Calculated: [] 

Mismatch:  ENCFF001HNF archived 
Actual: ['/files/ENCFF001HNS/'] 
Calculated: [] 

Mismatch:  ENCFF001GYG archived 
Actual: ['/files/ENCFF001GYO/'] 
Calculated: [] 

Mismatch:  ENCFF001GZS archived 
Actual: ['/files/ENCFF001HAG/'] 
Calculated: [] 

No derived_from found:  ENCFF001NQL revoked
No derived_from found:  ENCFF001LLU revoked
Mismatch:  ENCFF001HAF archived 
Actual: ['/files/ENCFF001HAM/'] 
Calculated: [] 

Mismatch:  ENCFF000TUF archived 
Actual: ['/files/ENCFF000TVV/'] 
Calculated: [] 

Mismatch:  ENCFF001HMG archived 
Actual: ['/files/ENCFF001HMS/'] 
Calculated: [] 

Mismatch:  ENCFF001HTQ archived 
Actual: ['/files/ENCFF001HUC/'] 
Calculated: [] 

Mismatch:  ENCFF001HSZ archived 
Actual: ['/files/ENCFF001HTK/'] 
Calculated: [] 

Mismatch:  ENCFF001GYT archived 
Actual: ['/files/ENCFF001GZF/'] 
Calculated: [] 

No derived_from found:  ENCFF001DYS revoked
Mismatch:  ENCFF000UCM archived 
Actual: ['/files/ENCFF000UDG/'] 
Calculated: [] 

Mismatch:  ENCFF001QEE archived 
Actual: ['/files/ENCFF001OZH/', '/files/ENCFF001OZI/', '/files/ENCFF001OZJ/', '/files/ENCFF001OZK/', '/files/ENCFF001OZL/', '/files/ENCFF001OZM/', '/files/ENCFF001OZN/', '/files/ENCFF001OZO/', '/files/ENCFF001OZP/', '/files/ENCFF001OZQ/', '/files/ENCFF001OZR/', '/files/ENCFF001OZS/', '/files/ENCFF001OZT/', '/files/ENCFF001OZU/', '/files/ENCFF001OZV/', '/files/ENCFF001OZW/', '/files/ENCFF001OZX/', '/files/ENCFF001OZY/', '/files/ENCFF001OZZ/', '/files/ENCFF001PAA/', '/files/ENCFF001PAB/', '/files/ENCFF001PAC/', '/files/ENCFF001PAD/', '/files/ENCFF001PAE/', '/files/ENCFF001PAF/', '/files/ENCFF001PAG/', '/files/ENCFF001PAH/', '/files/ENCFF001PAI/', '/files/ENCFF001PAJ/', '/files/ENCFF001PAK/', '/files/ENCFF001PAL/'] 
Calculated: [] 

Mismatch:  ENCFF001HHZ archived 
Actual: ['/files/ENCFF001HIS/'] 
Calculated: [] 

Mismatch:  ENCFF001HIG archived 
Actual: ['/files/ENCFF001HIR/'] 
Calculated: [] 

No derived_from found:  ENCFF001QDM archived
Mismatch:  ENCFF001QCW archived 
Actual: ['/files/ENCFF001QDP/'] 
Calculated: [] 

Mismatch:  ENCFF001HAZ archived 
Actual: ['/files/ENCFF001HBK/'] 
Calculated: [] 

Mismatch:  ENCFF001GXG archived 
Actual: ['/files/ENCFF001GXK/'] 
Calculated: [] 

Mismatch:  ENCFF001HAN archived 
Actual: ['/files/ENCFF001HAY/'] 
Calculated: [] 

Mismatch:  ENCFF000TVN archived 
Actual: ['/files/ENCFF000TWG/'] 
Calculated: [] 

Mismatch:  ENCFF000TFH archived 
Actual: ['/files/ENCFF000TFQ/'] 
Calculated: [] 

Mismatch:  ENCFF001HHW archived 
Actual: ['/files/ENCFF001HID/'] 
Calculated: [] 

No derived_from found:  ENCFF000ZUZ archived
Mismatch:  ENCFF001HAL archived 
Actual: ['/files/ENCFF001HAV/'] 
Calculated: [] 

No derived_from found:  ENCFF001LTC revoked
Mismatch:  ENCFF001QCT archived 
Actual: ['/files/ENCFF001QDO/'] 
Calculated: [] 

Mismatch:  ENCFF001HBZ archived 
Actual: ['/files/ENCFF001HCM/'] 
Calculated: [] 

Mismatch:  ENCFF000UDW archived 
Actual: ['/files/ENCFF000UER/'] 
Calculated: [] 

No derived_from found:  ENCFF000ZUZ archived
Mismatch:  ENCFF001HXE archived 
Actual: ['/files/ENCFF001HXQ/'] 
Calculated: [] 

No derived_from found:  ENCFF000ZUZ archived
Mismatch:  ENCFF001HJU archived 
Actual: ['/files/ENCFF001HKF/'] 
Calculated: [] 

Mismatch:  ENCFF001HJL archived 
Actual: ['/files/ENCFF001HJV/'] 
Calculated: [] 

Mismatch:  ENCFF001HQJ archived 
Actual: ['/files/ENCFF001HQN/'] 
Calculated: [] 

Mismatch:  ENCFF001HNW archived 
Actual: ['/files/ENCFF001HOD/'] 
Calculated: [] 

Mismatch:  ENCFF000SIO archived 
Actual: ['/files/ENCFF000SIW/'] 
Calculated: [] 

Mismatch:  ENCFF001GXT archived 
Actual: ['/files/ENCFF001GXZ/'] 
Calculated: [] 

Mismatch:  ENCFF001HOB archived 
Actual: ['/files/ENCFF001HON/'] 
Calculated: [] 

Mismatch:  ENCFF001HMT archived 
Actual: ['/files/ENCFF001HNC/'] 
Calculated: [] 

Mismatch:  ENCFF001HLF archived 
Actual: ['/files/ENCFF001HLR/'] 
Calculated: [] 

Mismatch:  ENCFF001HLT archived 
Actual: ['/files/ENCFF001HME/'] 
Calculated: [] 

Mismatch:  ENCFF001QEF archived 
Actual: ['/files/ENCFF001QEK/'] 
Calculated: [] 

No derived_from found:  ENCFF000ZUZ archived
Mismatch:  ENCFF001HKA archived 
Actual: ['/files/ENCFF001HKG/'] 
Calculated: [] 

Mismatch:  ENCFF001HCU archived 
Actual: ['/files/ENCFF001HDF/'] 
Calculated: [] 

Mismatch:  ENCFF001GWT archived 
Actual: ['/files/ENCFF001GXE/'] 
Calculated: [] 

Mismatch:  ENCFF001HHI archived 
Actual: ['/files/ENCFF001HHU/'] 
Calculated: [] 

Mismatch:  ENCFF001HVY archived 
Actual: ['/files/ENCFF001HWJ/'] 
Calculated: [] 

Mismatch:  ENCFF001HIX archived 
Actual: ['/files/ENCFF001HJJ/'] 
Calculated: [] 

Mismatch:  ENCFF000TZR archived 
Actual: ['/files/ENCFF000UAK/'] 
Calculated: [] 

Mismatch:  ENCFF000UIM archived 
Actual: ['/files/ENCFF000UJF/'] 
Calculated: [] 

Mismatch:  ENCFF001HKS archived 
Actual: ['/files/ENCFF001HLJ/'] 
Calculated: [] 

Mismatch:  ENCFF001GVS archived 
Actual: ['/files/ENCFF001GWE/'] 
Calculated: [] 

Mismatch:  ENCFF001HYE archived 
Actual: ['/files/ENCFF001HYO/'] 
Calculated: [] 

Mismatch:  ENCFF001EYZ archived 
Actual: ['/files/ENCFF001EZW/'] 
Calculated: [] 

Mismatch:  ENCFF001EYL archived 
Actual: ['/files/ENCFF001EYY/'] 
Calculated: [] 

No derived_from found:  ENCFF000ZUZ archived
Mismatch:  ENCFF000UQE archived 
Actual: ['/files/ENCFF000UQR/'] 
Calculated: [] 

Mismatch:  ENCFF001HRW archived 
Actual: ['/files/ENCFF001HSI/'] 
Calculated: [] 

Mismatch:  ENCFF001QCV archived 
Actual: ['/files/ENCFF001QDW/'] 
Calculated: [] 

Mismatch:  ENCFF001GZG archived 
Actual: ['/files/ENCFF001GZT/'] 
Calculated: [] 

Mismatch:  ENCFF001HXR archived 
Actual: ['/files/ENCFF001HYC/'] 
Calculated: [] 

Mismatch:  ENCFF001GWG archived 
Actual: ['/files/ENCFF001GWR/'] 
Calculated: [] 

Mismatch:  ENCFF001HXD archived 
Actual: ['/files/ENCFF001HXN/'] 
Calculated: [] 

Mismatch:  ENCFF001HYQ archived 
Actual: ['/files/ENCFF001HYX/'] 
Calculated: [] 

Mismatch:  ENCFF001HYV archived 
Actual: ['/files/ENCFF001HZB/'] 
Calculated: [] 

Mismatch:  ENCFF001HOO archived 
Actual: ['/files/ENCFF001HOY/'] 
Calculated: [] 

Mismatch:  ENCFF000TWP archived 
Actual: ['/files/ENCFF000TXG/'] 
Calculated: [] 

Mismatch:  ENCFF001HPW archived 
Actual: ['/files/ENCFF001HQI/'] 
Calculated: [] 

Mismatch:  ENCFF001HQW archived 
Actual: ['/files/ENCFF001HRI/'] 
Calculated: [] 

Mismatch:  ENCFF001HSJ archived 
Actual: ['/files/ENCFF001HSV/'] 
Calculated: [] 

Mismatch:  ENCFF001HTA archived 
Actual: ['/files/ENCFF001HTJ/'] 
Calculated: [] 

Mismatch:  ENCFF000UTD archived 
Actual: ['/files/ENCFF000UTV/'] 
Calculated: [] 

Mismatch:  ENCFF001HTM archived 
Actual: ['/files/ENCFF001HTT/'] 
Calculated: [] 

No derived_from found:  ENCFF001NUD released






    
Out[102]:





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  False,
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 array([ {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001QDF', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001LJN', 'released')], 'derived_from': ['/files/ENCFF001LJN/'], 'matching_filters': True, 'accession': 'ENCFF001LJA', 'filtered_data': [('ENCFF001LJN', 'released')]},
        {'weakly_filtered_data': [('ENCFF001NYS', 'released')], 'derived_from': ['/files/ENCFF001NYS/'], 'matching_filters': True, 'accession': 'ENCFF001NYH', 'filtered_data': [('ENCFF001NYS', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HVW', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HVM', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001KWE', 'released'), ('ENCFF001KWL', 'revoked')], 'derived_from': ['/files/ENCFF001KWE/'], 'matching_filters': False, 'accession': 'ENCFF001KVQ', 'filtered_data': [('ENCFF001KWE', 'released')]},
        {'weakly_filtered_data': [('ENCFF001MMU', 'released')], 'derived_from': ['/files/ENCFF001MMU/'], 'matching_filters': True, 'accession': 'ENCFF001MMQ', 'filtered_data': [('ENCFF001MMU', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF000TEY', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HUE', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001LLL', 'revoked'), ('ENCFF001LLM', 'released')], 'derived_from': ['/files/ENCFF001LLM/'], 'matching_filters': False, 'accession': 'ENCFF001LLB', 'filtered_data': [('ENCFF001LLM', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HKI', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF000UUE', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HUB', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HWN', 'filtered_data': []},
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        {'weakly_filtered_data': [('ENCFF001MSW', 'released')], 'derived_from': ['/files/ENCFF001MSW/'], 'matching_filters': True, 'accession': 'ENCFF001MSP', 'filtered_data': [('ENCFF001MSW', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF000TZR', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF000UIM', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HKS', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001GVS', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001KIL', 'released')], 'derived_from': ['/files/ENCFF001KIL/'], 'matching_filters': True, 'accession': 'ENCFF001KIG', 'filtered_data': [('ENCFF001KIL', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KKE', 'released')], 'derived_from': ['/files/ENCFF001KKE/'], 'matching_filters': True, 'accession': 'ENCFF001KJT', 'filtered_data': [('ENCFF001KKE', 'released')]},
        {'weakly_filtered_data': [('ENCFF000VLG', 'released')], 'derived_from': ['/files/ENCFF000VLG/'], 'matching_filters': True, 'accession': 'ENCFF000VLC', 'filtered_data': [('ENCFF000VLG', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HYE', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001KIO', 'released')], 'derived_from': ['/files/ENCFF001KIO/'], 'matching_filters': True, 'accession': 'ENCFF001KII', 'filtered_data': [('ENCFF001KIO', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KIU', 'released')], 'derived_from': ['/files/ENCFF001KIU/'], 'matching_filters': True, 'accession': 'ENCFF001KIJ', 'filtered_data': [('ENCFF001KIU', 'released')]},
        {'weakly_filtered_data': [('ENCFF000ZJW', 'released'), ('ENCFF000ZJX', 'revoked')], 'derived_from': ['/files/ENCFF000ZJW/'], 'matching_filters': False, 'accession': 'ENCFF000ZJT', 'filtered_data': [('ENCFF000ZJW', 'released')]},
        {'weakly_filtered_data': [('ENCFF000ZJY', 'released'), ('ENCFF000ZJZ', 'revoked')], 'derived_from': ['/files/ENCFF000ZJY/'], 'matching_filters': False, 'accession': 'ENCFF000ZJU', 'filtered_data': [('ENCFF000ZJY', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001EYZ', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001EYL', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF000ZUZ', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF000UQE', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HRW', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF000UPE', 'released'), ('ENCFF000UPG', 'released')], 'derived_from': ['/files/ENCFF000UPE/', '/files/ENCFF000UPG/'], 'matching_filters': True, 'accession': 'ENCFF000UPB', 'filtered_data': [('ENCFF000UPE', 'released'), ('ENCFF000UPG', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001QCV', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF000VEK', 'released')], 'derived_from': ['/files/ENCFF000VEK/'], 'matching_filters': True, 'accession': 'ENCFF000VEA', 'filtered_data': [('ENCFF000VEK', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KPR', 'released')], 'derived_from': ['/files/ENCFF001KPR/'], 'matching_filters': True, 'accession': 'ENCFF001KPD', 'filtered_data': [('ENCFF001KPR', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001GZG', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001KUK', 'released')], 'derived_from': ['/files/ENCFF001KUK/'], 'matching_filters': True, 'accession': 'ENCFF001KUE', 'filtered_data': [('ENCFF001KUK', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KYS', 'released')], 'derived_from': ['/files/ENCFF001KYS/'], 'matching_filters': True, 'accession': 'ENCFF001KYK', 'filtered_data': [('ENCFF001KYS', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HXR', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001GWG', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HXD', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001OBJ', 'released')], 'derived_from': ['/files/ENCFF001OBJ/'], 'matching_filters': True, 'accession': 'ENCFF001OAH', 'filtered_data': [('ENCFF001OBJ', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HYQ', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HYV', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001LGT', 'released')], 'derived_from': ['/files/ENCFF001LGT/'], 'matching_filters': True, 'accession': 'ENCFF001LGF', 'filtered_data': [('ENCFF001LGT', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KAM', 'released')], 'derived_from': ['/files/ENCFF001KAM/'], 'matching_filters': True, 'accession': 'ENCFF001KAA', 'filtered_data': [('ENCFF001KAM', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KAK', 'released')], 'derived_from': ['/files/ENCFF001KAK/'], 'matching_filters': True, 'accession': 'ENCFF001KAB', 'filtered_data': [('ENCFF001KAK', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KAM', 'released')], 'derived_from': ['/files/ENCFF001KAM/'], 'matching_filters': True, 'accession': 'ENCFF001KAA', 'filtered_data': [('ENCFF001KAM', 'released')]},
        {'weakly_filtered_data': [('ENCFF001JYN', 'released')], 'derived_from': ['/files/ENCFF001JYN/'], 'matching_filters': True, 'accession': 'ENCFF001JXY', 'filtered_data': [('ENCFF001JYN', 'released')]},
        {'weakly_filtered_data': [('ENCFF001LGH', 'released')], 'derived_from': ['/files/ENCFF001LGH/'], 'matching_filters': True, 'accession': 'ENCFF001LFS', 'filtered_data': [('ENCFF001LGH', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HOO', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF000VHL', 'released')], 'derived_from': ['/files/ENCFF000VHL/'], 'matching_filters': True, 'accession': 'ENCFF000VGM', 'filtered_data': [('ENCFF000VHL', 'released')]},
        {'weakly_filtered_data': [('ENCFF001JZL', 'released')], 'derived_from': ['/files/ENCFF001JZL/'], 'matching_filters': True, 'accession': 'ENCFF001JYX', 'filtered_data': [('ENCFF001JZL', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KEU', 'released')], 'derived_from': ['/files/ENCFF001KEU/'], 'matching_filters': True, 'accession': 'ENCFF001KEN', 'filtered_data': [('ENCFF001KEU', 'released')]},
        {'weakly_filtered_data': [('ENCFF000VDV', 'released')], 'derived_from': ['/files/ENCFF000VDV/'], 'matching_filters': True, 'accession': 'ENCFF000VDH', 'filtered_data': [('ENCFF000VDV', 'released')]},
        {'weakly_filtered_data': [('ENCFF000QKK', 'released')], 'derived_from': ['/files/ENCFF000QKK/'], 'matching_filters': True, 'accession': 'ENCFF000QKE', 'filtered_data': [('ENCFF000QKK', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF000TWP', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001KCX', 'released')], 'derived_from': ['/files/ENCFF001KCX/'], 'matching_filters': True, 'accession': 'ENCFF001KCQ', 'filtered_data': [('ENCFF001KCX', 'released')]},
        {'weakly_filtered_data': [('ENCFF001KIM', 'released')], 'derived_from': ['/files/ENCFF001KIM/'], 'matching_filters': True, 'accession': 'ENCFF001KIE', 'filtered_data': [('ENCFF001KIM', 'released')]},
        {'weakly_filtered_data': [('ENCFF000TOK', 'released')], 'derived_from': ['/files/ENCFF000TOK/'], 'matching_filters': True, 'accession': 'ENCFF000TOB', 'filtered_data': [('ENCFF000TOK', 'released')]},
        {'weakly_filtered_data': [('ENCFF000TOI', 'released')], 'derived_from': ['/files/ENCFF000TOI/'], 'matching_filters': True, 'accession': 'ENCFF000TOA', 'filtered_data': [('ENCFF000TOI', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HPW', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HQW', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001MUT', 'released')], 'derived_from': ['/files/ENCFF001MUT/'], 'matching_filters': True, 'accession': 'ENCFF001MUQ', 'filtered_data': [('ENCFF001MUT', 'released')]},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HSJ', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HTA', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF000UTD', 'filtered_data': []},
        {'weakly_filtered_data': [], 'derived_from': [], 'matching_filters': True, 'accession': 'ENCFF001HTM', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001NCF', 'released'), ('ENCFF001NCG', 'revoked'), ('ENCFF001NCH', 'released'), ('ENCFF001NCI', 'revoked'), ('ENCFF001NUT', 'revoked')], 'derived_from': [], 'matching_filters': False, 'accession': 'ENCFF001NUD', 'filtered_data': []},
        {'weakly_filtered_data': [('ENCFF001IFD', 'released')], 'derived_from': ['/files/ENCFF001IFD/'], 'matching_filters': True, 'accession': 'ENCFF001IEX', 'filtered_data': [('ENCFF001IFD', 'released')]},
        {'weakly_filtered_data': [('ENCFF000VDN', 'released')], 'derived_from': ['/files/ENCFF000VDN/'], 'matching_filters': True, 'accession': 'ENCFF000VDB', 'filtered_data': [('ENCFF000VDN', 'released')]},
        {'weakly_filtered_data': [('ENCFF000VDU', 'released')], 'derived_from': ['/files/ENCFF000VDU/'], 'matching_filters': True, 'accession': 'ENCFF000VDJ', 'filtered_data': [('ENCFF000VDU', 'released')]}], dtype=object))

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([True],
 array([ {'derived_from': ['/files/ENCFF806NGJ/', '/files/ENCFF604XAU/', '/files/ENCFF287JEK/', '/files/ENCFF837PPR/'], 'accession': 'ENCFF578WIL'}], dtype=object))

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ndf_files, ndf_experiments, ndf_derived_from_match, ndf_new_derived_from_data = main(no_derived_from[:10])
#ndf_derived_from_match
#[(d['accession'], d['derived_from']) for d in ndf_new_derived_from_data]


    

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ndf_new_derived_from_data[[not d for d in ndf_derived_from_match]]


    

    
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array([], dtype=object)

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