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In [124]:



    


import warnings
warnings.filterwarnings('ignore')

import numpy
import matplotlib.pyplot as plt
import glob

import pandas as pd
#from bokeh.charts import TimeSeries, show, output_file

import iris
from iris.experimental.equalise_cubes import equalise_attributes

####

import os, sys

cwd = os.getcwd()
repo_dir = '/'
for directory in cwd.split('/')[1:]:
    repo_dir = os.path.join(repo_dir, directory)
    if directory == 'ocean-analysis':
        break

modules_dir = os.path.join(repo_dir, 'modules')
sys.path.append(modules_dir)

processing_dir = os.path.join(repo_dir, 'data_processing')
sys.path.append(processing_dir)

import timeseries
import remove_drift

Read data





In [125]:



    


# Configuration
model = 'NorESM1-M'
experiment = 'historical'
rip = 'r1i1p1'
ua6_dir = '/g/data/ua6/DRSv3/CMIP5'  # /g/data/r87/dbi599
r87_dir = '/g/data/r87/dbi599/DRSv2/CMIP5'

depth_index = 0
i_index = 34
j_index = 50

#lev_constraint = iris.Constraint(lev=depth)
#lat_constraint = iris.Constraint(lat=latitude)
#lon_constraint = iris.Constraint(lon=longitude)



    











In [126]:



    


control_files = glob.glob('%s/%s/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_%s_piControl_r1i1p1_*.nc' %(ua6_dir, model, model) )
experiment_files = glob.glob('%s/%s/%s/mon/ocean/%s/thetao/latest/thetao_Omon_%s_%s_%s_*.nc' %(ua6_dir, model, experiment, rip, model, experiment, rip) )
dedrifted_files = glob.glob('%s/%s/%s/yr/ocean/%s/thetao/latest/dedrifted/thetao_Oyr_%s_%s_%s_??????-??????.nc' %(r87_dir, model, experiment, rip, model, experiment, rip) )
coefficient_file = '%s/%s/piControl/yr/ocean/r1i1p1/thetao/latest/thetao-coefficients_Oyr_%s_piControl_r1i1p1_all.nc' %(r87_dir, model, model)

control_files.sort()
experiment_files.sort()
dedrifted_files.sort()



    











In [127]:



    


def read_files(file_list, depth_index, i_index, j_index):
    """Read a list of files into an iris Cube"""
    
    cube = iris.load(file_list, 'sea_water_potential_temperature')
    iris.util.unify_time_units(cube)
    equalise_attributes(cube)
    cube = cube.concatenate_cube()[:, depth_index, i_index, j_index]
    
    return cube



    











In [128]:



    


control_cube = read_files(control_files, depth_index, i_index, j_index)
control_cube = timeseries.convert_to_annual(control_cube)



    











In [129]:



    


experiment_cube = read_files(experiment_files, depth_index, i_index, j_index)
experiment_cube = timeseries.convert_to_annual(experiment_cube)



    











In [130]:



    


dedrifted_cube = read_files(dedrifted_files, depth_index, i_index, j_index)



    











In [131]:



    


a_cube = iris.load_cube(coefficient_file, 'coefficient a')[depth_index, i_index, j_index]
b_cube = iris.load_cube(coefficient_file, 'coefficient b')[depth_index, i_index, j_index]
c_cube = iris.load_cube(coefficient_file, 'coefficient c')[depth_index, i_index, j_index]
d_cube = iris.load_cube(coefficient_file, 'coefficient d')[depth_index, i_index, j_index]



    











In [132]:



    


numpy_poly = numpy.poly1d([float(d_cube.data), 
                           float(c_cube.data),
                           float(b_cube.data),
                           float(a_cube.data)])
cubic_fit = numpy_poly(control_cube.coord('time').points)



    











In [133]:



    


first_data_cube = iris.load_cube(experiment_files[0], 'sea_water_potential_temperature')[:, depth_index, i_index, j_index]
first_data_cube = timeseries.convert_to_annual(first_data_cube)
time_diff, branch_time, new_time_unit = remove_drift.time_adjustment(first_data_cube, a_cube, 'annual')



    











In [134]:



    


time_coord = experiment_cube.coord('time')
time_coord.convert_units(new_time_unit)
experiment_time_values = time_coord.points.astype(numpy.float32) - time_diff

Plot





In [135]:



    


%matplotlib inline



    











In [136]:



    


#control_times = control_cube.coord('time').points
#df = pd.DataFrame(control_cube.data, index=control_times, columns=['control'])



    











In [142]:



    


fig = plt.figure(figsize=[14, 7])
plt.plot(control_cube.coord('time').points, control_cube.data, label='control')
plt.plot(experiment_time_values, experiment_cube.data, label='experiment')
plt.plot(experiment_time_values, dedrifted_cube.data, label='dedrifted')
plt.plot(control_cube.coord('time').points, cubic_fit, label='cubic fit')
plt.ylabel('temperature')
plt.xlabel(str(new_time_unit))

plt.legend()
plt.show()



    


















    
























In [143]:



    


coefficient_file



    


















    
Out[143]:








'/g/data/r87/dbi599/DRSv2/CMIP5/NorESM1-M/piControl/yr/ocean/r1i1p1/thetao/latest/thetao-coefficients_Oyr_NorESM1-M_piControl_r1i1p1_all.nc'

















In [144]:



    


control_files



    


















    
Out[144]:








['/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_070001-070312.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_070401-070712.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_070801-071112.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_071201-071512.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_071601-071912.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_072001-072312.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_072401-072712.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_072801-073112.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_073201-073512.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_073601-073912.nc',
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 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_074401-074712.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_074801-075112.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_075201-075512.nc',
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 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_083601-083912.nc',
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 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_098801-099112.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_099201-099512.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_099601-099912.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_100001-100312.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_100401-100712.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_100801-101112.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_101201-101512.nc',
 '/g/data/ua6/DRSv3/CMIP5/NorESM1-M/piControl/mon/ocean/r1i1p1/thetao/latest/thetao_Omon_NorESM1-M_piControl_r1i1p1_101601-101912.nc',
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In [145]:



    


experiment_files



    


















    
Out[145]:








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In [146]:



    


dedrifted_files



    


















    
Out[146]:








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 '/g/data/r87/dbi599/DRSv2/CMIP5/NorESM1-M/historical/yr/ocean/r1i1p1/thetao/latest/dedrifted/thetao_Oyr_NorESM1-M_historical_r1i1p1_197401-197712.nc',
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 '/g/data/r87/dbi599/DRSv2/CMIP5/NorESM1-M/historical/yr/ocean/r1i1p1/thetao/latest/dedrifted/thetao_Oyr_NorESM1-M_historical_r1i1p1_199001-199312.nc',
 '/g/data/r87/dbi599/DRSv2/CMIP5/NorESM1-M/historical/yr/ocean/r1i1p1/thetao/latest/dedrifted/thetao_Oyr_NorESM1-M_historical_r1i1p1_199401-199712.nc',
 '/g/data/r87/dbi599/DRSv2/CMIP5/NorESM1-M/historical/yr/ocean/r1i1p1/thetao/latest/dedrifted/thetao_Oyr_NorESM1-M_historical_r1i1p1_199801-200112.nc',
 '/g/data/r87/dbi599/DRSv2/CMIP5/NorESM1-M/historical/yr/ocean/r1i1p1/thetao/latest/dedrifted/thetao_Oyr_NorESM1-M_historical_r1i1p1_200201-200512.nc']

















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Content source: DamienIrving/ocean-analysis

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