This repository contains Jupyter notebooks and data files that demonstrate how pydna can be used to plan, document and simulate cloning experiments.

Static versions of the notebooks can also be displayed as web pages through nbviewer.

Dynamic notebooks

Click on the red and black "launch binder" image above to run the notebooks on the cloud service Mybinder. This way notebooks can be executed online without having to install anything on the users computer.

N.B. Mybinder runs on infrastructure paid for by the Freeman lab. Please do not abuse the service. If you want to do extensive testing of these notebooks, it is better to download this repository and run the notebooks locally (the notebooks will also run faster).

Automatic testing

The contents of this repository is released under the MIT Licence

Use this Digital Object Identifier (DOI) when citing this repository.