# 如何使用Python擬合資料?

## 準備工作：範例所需檔案下載及說明

• O-C_ephemeris.txt (已在files4examples資料夾中無須下載)：

檔案說明(待補)

• pulse-profile.txt (已在files4examples資料夾中無須下載)：

檔案說明(待補)

• QSOnumber.txt (已在files4examples資料夾中無須下載)：

檔案說明(待補)

• 其他範例檔案(待補)

## 範例1：以NumPy的polyfit 進行斜直線fitting



In [1]:

from astropy.io import ascii




In [2]:

import numpy as np

y1=np.log10(L_infrared_NLSy1)
y2=np.log10(L_infrared_SG)
y3=np.log10(L_infrared_RG)

p_NLSy1 = np.poly1d(np.polyfit(x1,y1,1))
p_SG = np.poly1d(np.polyfit(x2,y2,1))
p_RG = np.poly1d(np.polyfit(x3,y3,1))


• polyfit為NumPy中以多項式曲線來擬合資料的函式，回傳值為多項式的係數。 poly1d為NumPy中用來產生多項式物件的類別。


In [3]:

%matplotlib notebook
import matplotlib.pyplot as plt

fig = plt.figure()
plt.xlim(32,40)
plt.ylim(20,28)

x = np.linspace(32,40,100)
plt.scatter(x1,y1,facecolor='none',edgecolor='r',marker='D')
plt.plot(x,p_NLSy1(x),'r-')

plt.scatter(x2,y2,color='k',marker='+',s=80)
plt.plot(x,p_SG(x),'k-')

plt.scatter(x3,y3,facecolor='none',edgecolor='k',marker='^',s=80)
plt.plot(x,p_RG(x),'k--')

plt.xlabel(r'$\nu$ L$_\nu$ [22$\mu$m] log(W)')
plt.ylabel(r'$L_\nu$ [1.4GHz] log(W/Hz)')
plt.legend(('NLSy1','SG','RG'),loc='upper left')
plt.show()




var element = $('#fb129f94-b03c-4748-b2ab-15a2181281f9'); /* Put everything inside the global mpl namespace */ window.mpl = {}; mpl.get_websocket_type = function() { if (typeof(WebSocket) !== 'undefined') { return WebSocket; } else if (typeof(MozWebSocket) !== 'undefined') { return MozWebSocket; } else { alert('Your browser does not have WebSocket support.' + 'Please try Chrome, Safari or Firefox ≥ 6. ' + 'Firefox 4 and 5 are also supported but you ' + 'have to enable WebSockets in about:config.'); }; } mpl.figure = function(figure_id, websocket, ondownload, parent_element) { this.id = figure_id; this.ws = websocket; this.supports_binary = (this.ws.binaryType != undefined); if (!this.supports_binary) { var warnings = document.getElementById("mpl-warnings"); if (warnings) { warnings.style.display = 'block'; warnings.textContent = ( "This browser does not support binary websocket messages. " + "Performance may be slow."); } } this.imageObj = new Image(); this.context = undefined; this.message = undefined; this.canvas = undefined; this.rubberband_canvas = undefined; this.rubberband_context = undefined; this.format_dropdown = undefined; this.image_mode = 'full'; this.root =$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

$(parent_element).append(this.root); this._init_header(this); this._init_canvas(this); this._init_toolbar(this); var fig = this; this.waiting = false; this.ws.onopen = function () { fig.send_message("supports_binary", {value: fig.supports_binary}); fig.send_message("send_image_mode", {}); fig.send_message("refresh", {}); } this.imageObj.onload = function() { if (fig.image_mode == 'full') { // Full images could contain transparency (where diff images // almost always do), so we need to clear the canvas so that // there is no ghosting. fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height); } fig.context.drawImage(fig.imageObj, 0, 0); }; this.imageObj.onunload = function() { this.ws.close(); } this.ws.onmessage = this._make_on_message_function(this); this.ondownload = ondownload; } mpl.figure.prototype._init_header = function() { var titlebar =$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = ( '<div class="ui-dialog-title" style="width: 100%; ' + 'text-align: center; padding: 3px;"/>'); titlebar.append(titletext) this.root.append(titlebar); this.header = titletext[0]; } mpl.figure.prototype._canvas_extra_style = function(canvas_div) { } mpl.figure.prototype._root_extra_style = function(canvas_div) { } mpl.figure.prototype._init_canvas = function() { var fig = this; var canvas_div =('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = $('<canvas/>'); canvas.addClass('mpl-canvas'); canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0") this.canvas = canvas[0]; this.context = canvas[0].getContext("2d"); var rubberband =$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
$(this.rubberband_canvas).bind("contextmenu",function(e){ return false; }); function set_focus () { canvas.focus(); canvas_div.focus(); } window.setTimeout(set_focus, 100); } mpl.figure.prototype._init_toolbar = function() { var fig = this; var nav_element =$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = $('<button/>'); button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' + 'ui-button-icon-only'); button.attr('role', 'button'); button.attr('aria-disabled', 'false'); button.click(method_name, toolbar_event); button.mouseover(tooltip, toolbar_mouse_event); var icon_img =$('<span/>');

var tooltip_span = $('<span/>'); tooltip_span.addClass('ui-button-text'); tooltip_span.html(tooltip); button.append(icon_img); button.append(tooltip_span); nav_element.append(button); } var fmt_picker_span =$('<span/>');

var fmt_picker = $('<select/>'); fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content'); fmt_picker_span.append(fmt_picker); nav_element.append(fmt_picker_span); this.format_dropdown = fmt_picker[0]; for (var ind in mpl.extensions) { var fmt = mpl.extensions[ind]; var option =$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
$( ".ui-button" ).hover( function() {$(this).addClass("ui-state-hover");},
function() { $(this).removeClass("ui-state-hover");} ); var status_bar =$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - $(targ).offset().left; var y = e.pageY -$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "jpeg", "pdf", "png", "ps", "raw", "svg", "tif"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = $("#" + id); var ws_proxy = comm_websocket_adapter(comm) function ondownload(figure, format) { window.open(figure.imageObj.src); } var fig = new mpl.figure(id, ws_proxy, ondownload, element.get(0)); // Call onopen now - mpl needs it, as it is assuming we've passed it a real // web socket which is closed, not our websocket->open comm proxy. ws_proxy.onopen(); fig.parent_element = element.get(0); fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>"); if (!fig.cell_info) { console.error("Failed to find cell for figure", id, fig); return; } var output_index = fig.cell_info[2] var cell = fig.cell_info[0]; }; mpl.figure.prototype.handle_close = function(fig, msg) { fig.root.unbind('remove') // Update the output cell to use the data from the current canvas. fig.push_to_output(); var dataURL = fig.canvas.toDataURL(); // Re-enable the keyboard manager in IPython - without this line, in FF, // the notebook keyboard shortcuts fail. IPython.keyboard_manager.enable()$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = $('<div/>') nav_element.attr('style', 'width: 100%'); this.root.append(nav_element); // Define a callback function for later on. function toolbar_event(event) { return fig.toolbar_button_onclick(event['data']); } function toolbar_mouse_event(event) { return fig.toolbar_button_onmouseover(event['data']); } for(var toolbar_ind in mpl.toolbar_items){ var name = mpl.toolbar_items[toolbar_ind][0]; var tooltip = mpl.toolbar_items[toolbar_ind][1]; var image = mpl.toolbar_items[toolbar_ind][2]; var method_name = mpl.toolbar_items[toolbar_ind][3]; if (!name) { continue; }; var button =$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = ('<span class="mpl-message" style="text-align:right; float: right;"/>'); nav_element.append(status_bar); this.message = status_bar[0]; // Add the close button to the window. var buttongrp =('<div class="btn-group inline pull-right"></div>');
var button = $('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>'); button.click(function (evt) { fig.handle_close(fig, {}); } ); button.mouseover('Stop Interaction', toolbar_mouse_event); buttongrp.append(button); var titlebar = this.root.find($('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}




In [4]:

print(np.polyfit(x1,y1,1))




[  1.20566047 -21.85036595]




In [5]:

print(np.polyfit(x2,y2,1))




[  1.0522583  -15.94596635]




In [6]:

print(np.polyfit(x3,y3,1))




[ 0.64201694  2.25599313]



## 範例2：以NumPy的linalg.lstsq 進行斜直線fitting



In [7]:

from astropy.io import ascii




In [8]:

import numpy as np

y1=np.log10(L_infrared_NLSy1)
y2=np.log10(L_infrared_SG)
y3=np.log10(L_infrared_RG)

x = np.linspace(32,40,100)




In [9]:

A1 = np.vstack([x1, np.ones(len(x1))]).T
m1,c1 = np.linalg.lstsq(A1, y1)[0]

A2 = np.vstack([x2, np.ones(len(x2))]).T
m2,c2 = np.linalg.lstsq(A2, y2)[0]

A3 = np.vstack([x3, np.ones(len(x3))]).T
m3,c3 = np.linalg.lstsq(A3, y3)[0]

# Example
# y = Ap, where A = [[x 1]] and p = [[m], [c]]
# x = np.array([0, 1, 2, 3])
# A = np.vstack([x, np.ones(len(x))]).T
# A =
# array([[ 0.,  1.],
#        [ 1.,  1.],
#        [ 2.,  1.],
#        [ 3.,  1.]])

# len() : 求出矩陣中元素個數
# ones() : 令矩陣中所有元素的值等於 1
# vstack().T : 將兩個矩陣進行堆疊並轉置




In [10]:

%matplotlib notebook
import matplotlib.pyplot as plt

fig = plt.figure()
plt.xlim(32,40)
plt.ylim(20,28)

plt.scatter(x1, y1,facecolor='none',edgecolor='r',marker='D')
plt.plot(x, m1*x + c1, 'r',label='NLSy1')

plt.scatter(x2, y2,color='k',marker='+',s=80)
plt.plot(x, m2*x + c2, 'k', label='SG')

plt.scatter(x3, y3,facecolor='none',edgecolor='k',marker='^',s=80)
plt.plot(x, m3*x + c3, 'k--', label='RG')

plt.xlabel(r'$\nu$ $L_\nu$ [22$\mu$m] log(W)')
plt.ylabel(r'$L_\nu$ [1.4GHz] log(W/Hz)')
plt.legend(('NLSy1','SG','RG'),loc='upper left')
plt.show()




var element = $('#f1856962-d116-4510-8935-f72efbb2f91d'); /* Put everything inside the global mpl namespace */ window.mpl = {}; mpl.get_websocket_type = function() { if (typeof(WebSocket) !== 'undefined') { return WebSocket; } else if (typeof(MozWebSocket) !== 'undefined') { return MozWebSocket; } else { alert('Your browser does not have WebSocket support.' + 'Please try Chrome, Safari or Firefox ≥ 6. ' + 'Firefox 4 and 5 are also supported but you ' + 'have to enable WebSockets in about:config.'); }; } mpl.figure = function(figure_id, websocket, ondownload, parent_element) { this.id = figure_id; this.ws = websocket; this.supports_binary = (this.ws.binaryType != undefined); if (!this.supports_binary) { var warnings = document.getElementById("mpl-warnings"); if (warnings) { warnings.style.display = 'block'; warnings.textContent = ( "This browser does not support binary websocket messages. " + "Performance may be slow."); } } this.imageObj = new Image(); this.context = undefined; this.message = undefined; this.canvas = undefined; this.rubberband_canvas = undefined; this.rubberband_context = undefined; this.format_dropdown = undefined; this.image_mode = 'full'; this.root =$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

$(parent_element).append(this.root); this._init_header(this); this._init_canvas(this); this._init_toolbar(this); var fig = this; this.waiting = false; this.ws.onopen = function () { fig.send_message("supports_binary", {value: fig.supports_binary}); fig.send_message("send_image_mode", {}); fig.send_message("refresh", {}); } this.imageObj.onload = function() { if (fig.image_mode == 'full') { // Full images could contain transparency (where diff images // almost always do), so we need to clear the canvas so that // there is no ghosting. fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height); } fig.context.drawImage(fig.imageObj, 0, 0); }; this.imageObj.onunload = function() { this.ws.close(); } this.ws.onmessage = this._make_on_message_function(this); this.ondownload = ondownload; } mpl.figure.prototype._init_header = function() { var titlebar =$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = ( '<div class="ui-dialog-title" style="width: 100%; ' + 'text-align: center; padding: 3px;"/>'); titlebar.append(titletext) this.root.append(titlebar); this.header = titletext[0]; } mpl.figure.prototype._canvas_extra_style = function(canvas_div) { } mpl.figure.prototype._root_extra_style = function(canvas_div) { } mpl.figure.prototype._init_canvas = function() { var fig = this; var canvas_div =('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = $('<canvas/>'); canvas.addClass('mpl-canvas'); canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0") this.canvas = canvas[0]; this.context = canvas[0].getContext("2d"); var rubberband =$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
$(this.rubberband_canvas).bind("contextmenu",function(e){ return false; }); function set_focus () { canvas.focus(); canvas_div.focus(); } window.setTimeout(set_focus, 100); } mpl.figure.prototype._init_toolbar = function() { var fig = this; var nav_element =$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = $('<button/>'); button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' + 'ui-button-icon-only'); button.attr('role', 'button'); button.attr('aria-disabled', 'false'); button.click(method_name, toolbar_event); button.mouseover(tooltip, toolbar_mouse_event); var icon_img =$('<span/>');

var tooltip_span = $('<span/>'); tooltip_span.addClass('ui-button-text'); tooltip_span.html(tooltip); button.append(icon_img); button.append(tooltip_span); nav_element.append(button); } var fmt_picker_span =$('<span/>');

var fmt_picker = $('<select/>'); fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content'); fmt_picker_span.append(fmt_picker); nav_element.append(fmt_picker_span); this.format_dropdown = fmt_picker[0]; for (var ind in mpl.extensions) { var fmt = mpl.extensions[ind]; var option =$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
$( ".ui-button" ).hover( function() {$(this).addClass("ui-state-hover");},
function() { $(this).removeClass("ui-state-hover");} ); var status_bar =$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - $(targ).offset().left; var y = e.pageY -$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "jpeg", "pdf", "png", "ps", "raw", "svg", "tif"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = $("#" + id); var ws_proxy = comm_websocket_adapter(comm) function ondownload(figure, format) { window.open(figure.imageObj.src); } var fig = new mpl.figure(id, ws_proxy, ondownload, element.get(0)); // Call onopen now - mpl needs it, as it is assuming we've passed it a real // web socket which is closed, not our websocket->open comm proxy. ws_proxy.onopen(); fig.parent_element = element.get(0); fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>"); if (!fig.cell_info) { console.error("Failed to find cell for figure", id, fig); return; } var output_index = fig.cell_info[2] var cell = fig.cell_info[0]; }; mpl.figure.prototype.handle_close = function(fig, msg) { fig.root.unbind('remove') // Update the output cell to use the data from the current canvas. fig.push_to_output(); var dataURL = fig.canvas.toDataURL(); // Re-enable the keyboard manager in IPython - without this line, in FF, // the notebook keyboard shortcuts fail. IPython.keyboard_manager.enable()$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = $('<div/>') nav_element.attr('style', 'width: 100%'); this.root.append(nav_element); // Define a callback function for later on. function toolbar_event(event) { return fig.toolbar_button_onclick(event['data']); } function toolbar_mouse_event(event) { return fig.toolbar_button_onmouseover(event['data']); } for(var toolbar_ind in mpl.toolbar_items){ var name = mpl.toolbar_items[toolbar_ind][0]; var tooltip = mpl.toolbar_items[toolbar_ind][1]; var image = mpl.toolbar_items[toolbar_ind][2]; var method_name = mpl.toolbar_items[toolbar_ind][3]; if (!name) { continue; }; var button =$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = ('<span class="mpl-message" style="text-align:right; float: right;"/>'); nav_element.append(status_bar); this.message = status_bar[0]; // Add the close button to the window. var buttongrp =('<div class="btn-group inline pull-right"></div>');
var button = $('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>'); button.click(function (evt) { fig.handle_close(fig, {}); } ); button.mouseover('Stop Interaction', toolbar_mouse_event); buttongrp.append(button); var titlebar = this.root.find($('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}




In [11]:

print(m1, c1)
print(m2, c2)
print(m3, c3)




1.20566047134 -21.8503659548
1.05225830172 -15.9459663514
0.64201694396 2.25599313427



## 範例3：以SciPy的linregress 進行斜直線fitting



In [12]:

from astropy.io import ascii




In [13]:

import numpy as np

y1=np.log10(L_infrared_NLSy1)
y2=np.log10(L_infrared_SG)
y3=np.log10(L_infrared_RG)

from scipy import stats

slope_1, intercept_1, r_value_1, p_value_1, std_err_1 = stats.linregress(x1,y1)
slope_2, intercept_2, r_value_2, p_value_2, std_err_2 = stats.linregress(x2,y2)
slope_3, intercept_3, r_value_3, p_value_3, std_err_3 = stats.linregress(x3,y3)




In [14]:

%matplotlib notebook
import matplotlib.pyplot as plt

fig = plt.figure()
plt.xlim(32,40)
plt.ylim(20,28)

x = np.linspace(32,40,100)
plt.scatter(x1,y1,facecolor='none',edgecolor='r',marker='D')
plt.plot(x,slope_1*x+intercept_1,'r-')

plt.scatter(x2,y2,color='k',marker='+',s=80)
plt.plot(x,slope_2*x+intercept_2,'k-')

plt.scatter(x3,y3,facecolor='none',edgecolor='k',marker='^',s=80)
plt.plot(x,slope_3*x+intercept_3,'k--')

plt.xlabel(r'$\nu$ $L_\nu$ [22$\mu$m] log(W)')
plt.ylabel(r'$L_\nu$ [1.4GHz] log(W/Hz)')
plt.legend(('NLSy1','SG','RG'),loc='upper left')
plt.show()




var element = $('#e6f22dda-2bf8-4aec-a354-c5dedf889675'); /* Put everything inside the global mpl namespace */ window.mpl = {}; mpl.get_websocket_type = function() { if (typeof(WebSocket) !== 'undefined') { return WebSocket; } else if (typeof(MozWebSocket) !== 'undefined') { return MozWebSocket; } else { alert('Your browser does not have WebSocket support.' + 'Please try Chrome, Safari or Firefox ≥ 6. ' + 'Firefox 4 and 5 are also supported but you ' + 'have to enable WebSockets in about:config.'); }; } mpl.figure = function(figure_id, websocket, ondownload, parent_element) { this.id = figure_id; this.ws = websocket; this.supports_binary = (this.ws.binaryType != undefined); if (!this.supports_binary) { var warnings = document.getElementById("mpl-warnings"); if (warnings) { warnings.style.display = 'block'; warnings.textContent = ( "This browser does not support binary websocket messages. " + "Performance may be slow."); } } this.imageObj = new Image(); this.context = undefined; this.message = undefined; this.canvas = undefined; this.rubberband_canvas = undefined; this.rubberband_context = undefined; this.format_dropdown = undefined; this.image_mode = 'full'; this.root =$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

$(parent_element).append(this.root); this._init_header(this); this._init_canvas(this); this._init_toolbar(this); var fig = this; this.waiting = false; this.ws.onopen = function () { fig.send_message("supports_binary", {value: fig.supports_binary}); fig.send_message("send_image_mode", {}); fig.send_message("refresh", {}); } this.imageObj.onload = function() { if (fig.image_mode == 'full') { // Full images could contain transparency (where diff images // almost always do), so we need to clear the canvas so that // there is no ghosting. fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height); } fig.context.drawImage(fig.imageObj, 0, 0); }; this.imageObj.onunload = function() { this.ws.close(); } this.ws.onmessage = this._make_on_message_function(this); this.ondownload = ondownload; } mpl.figure.prototype._init_header = function() { var titlebar =$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = ( '<div class="ui-dialog-title" style="width: 100%; ' + 'text-align: center; padding: 3px;"/>'); titlebar.append(titletext) this.root.append(titlebar); this.header = titletext[0]; } mpl.figure.prototype._canvas_extra_style = function(canvas_div) { } mpl.figure.prototype._root_extra_style = function(canvas_div) { } mpl.figure.prototype._init_canvas = function() { var fig = this; var canvas_div =('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = $('<canvas/>'); canvas.addClass('mpl-canvas'); canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0") this.canvas = canvas[0]; this.context = canvas[0].getContext("2d"); var rubberband =$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
$(this.rubberband_canvas).bind("contextmenu",function(e){ return false; }); function set_focus () { canvas.focus(); canvas_div.focus(); } window.setTimeout(set_focus, 100); } mpl.figure.prototype._init_toolbar = function() { var fig = this; var nav_element =$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = $('<button/>'); button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' + 'ui-button-icon-only'); button.attr('role', 'button'); button.attr('aria-disabled', 'false'); button.click(method_name, toolbar_event); button.mouseover(tooltip, toolbar_mouse_event); var icon_img =$('<span/>');

var tooltip_span = $('<span/>'); tooltip_span.addClass('ui-button-text'); tooltip_span.html(tooltip); button.append(icon_img); button.append(tooltip_span); nav_element.append(button); } var fmt_picker_span =$('<span/>');

var fmt_picker = $('<select/>'); fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content'); fmt_picker_span.append(fmt_picker); nav_element.append(fmt_picker_span); this.format_dropdown = fmt_picker[0]; for (var ind in mpl.extensions) { var fmt = mpl.extensions[ind]; var option =$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
$( ".ui-button" ).hover( function() {$(this).addClass("ui-state-hover");},
function() { $(this).removeClass("ui-state-hover");} ); var status_bar =$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - $(targ).offset().left; var y = e.pageY -$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "jpeg", "pdf", "png", "ps", "raw", "svg", "tif"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = $("#" + id); var ws_proxy = comm_websocket_adapter(comm) function ondownload(figure, format) { window.open(figure.imageObj.src); } var fig = new mpl.figure(id, ws_proxy, ondownload, element.get(0)); // Call onopen now - mpl needs it, as it is assuming we've passed it a real // web socket which is closed, not our websocket->open comm proxy. ws_proxy.onopen(); fig.parent_element = element.get(0); fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>"); if (!fig.cell_info) { console.error("Failed to find cell for figure", id, fig); return; } var output_index = fig.cell_info[2] var cell = fig.cell_info[0]; }; mpl.figure.prototype.handle_close = function(fig, msg) { fig.root.unbind('remove') // Update the output cell to use the data from the current canvas. fig.push_to_output(); var dataURL = fig.canvas.toDataURL(); // Re-enable the keyboard manager in IPython - without this line, in FF, // the notebook keyboard shortcuts fail. IPython.keyboard_manager.enable()$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = $('<div/>') nav_element.attr('style', 'width: 100%'); this.root.append(nav_element); // Define a callback function for later on. function toolbar_event(event) { return fig.toolbar_button_onclick(event['data']); } function toolbar_mouse_event(event) { return fig.toolbar_button_onmouseover(event['data']); } for(var toolbar_ind in mpl.toolbar_items){ var name = mpl.toolbar_items[toolbar_ind][0]; var tooltip = mpl.toolbar_items[toolbar_ind][1]; var image = mpl.toolbar_items[toolbar_ind][2]; var method_name = mpl.toolbar_items[toolbar_ind][3]; if (!name) { continue; }; var button =$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = ('<span class="mpl-message" style="text-align:right; float: right;"/>'); nav_element.append(status_bar); this.message = status_bar[0]; // Add the close button to the window. var buttongrp =('<div class="btn-group inline pull-right"></div>');
var button = $('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>'); button.click(function (evt) { fig.handle_close(fig, {}); } ); button.mouseover('Stop Interaction', toolbar_mouse_event); buttongrp.append(button); var titlebar = this.root.find($('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}




In [15]:

print(slope_1, intercept_1, r_value_1, p_value_1, std_err_1)




1.20566047134 -21.8503659548 0.730529367991 5.89058883604e-25 0.0952507781472




In [16]:

print(slope_2, intercept_2, r_value_2, p_value_2, std_err_2)




1.05225830172 -15.9459663514 0.848667416498 1.01703572996e-15 0.091832278694




In [17]:

print(slope_3, intercept_3, r_value_3, p_value_3, std_err_3)




0.64201694396 2.25599313427 0.808741592761 3.11730887252e-11 0.0720461198017



## 範例4：以NumPy的polyfit多項式曲線擬合O-C ephemeris



In [18]:

from astropy.io import ascii
oc_ephemeris = ascii.read('../files4examples/O-C_ephemeris.txt', names=['cycles', 'delay', 'error'])
cycles = oc_ephemeris['cycles']
delay = oc_ephemeris['delay']
error = oc_ephemeris['error']


• polyfit為NumPy中以多項式曲線來擬合資料的函式，回傳值為多項式的係數。 poly1d為NumPy中用來產生多項式物件的類別。


In [19]:

import numpy as np
p2 = np.poly1d(np.polyfit(cycles, delay, 2))
p3 = np.poly1d(np.polyfit(cycles, delay, 3))
x = np.linspace(-10000, 50000, 100)




In [20]:

%matplotlib notebook
import matplotlib.pyplot as plt
from matplotlib.ticker import ScalarFormatter
fig = plt.figure()
plt.errorbar(cycles, delay, yerr=error, fmt='sk')
plt.hold(True)
plt.plot(x, p2(x), 'r-')
plt.plot(x, p3(x), '--')
plt.hold(False)
plt.ylim(-0.005, 0.03)
plt.legend(('Second', 'Third', 'Data'))
plt.xlabel('N (cycles)')
plt.ylabel('Delay (days)')
ax.xaxis.set_major_formatter(ScalarFormatter(useMathText=True))
ax.ticklabel_format(axis='x', style='sci', scilimits=(0,0))
plt.show()




var element = $('#798196cf-e836-4371-8414-4832370b395b'); /* Put everything inside the global mpl namespace */ window.mpl = {}; mpl.get_websocket_type = function() { if (typeof(WebSocket) !== 'undefined') { return WebSocket; } else if (typeof(MozWebSocket) !== 'undefined') { return MozWebSocket; } else { alert('Your browser does not have WebSocket support.' + 'Please try Chrome, Safari or Firefox ≥ 6. ' + 'Firefox 4 and 5 are also supported but you ' + 'have to enable WebSockets in about:config.'); }; } mpl.figure = function(figure_id, websocket, ondownload, parent_element) { this.id = figure_id; this.ws = websocket; this.supports_binary = (this.ws.binaryType != undefined); if (!this.supports_binary) { var warnings = document.getElementById("mpl-warnings"); if (warnings) { warnings.style.display = 'block'; warnings.textContent = ( "This browser does not support binary websocket messages. " + "Performance may be slow."); } } this.imageObj = new Image(); this.context = undefined; this.message = undefined; this.canvas = undefined; this.rubberband_canvas = undefined; this.rubberband_context = undefined; this.format_dropdown = undefined; this.image_mode = 'full'; this.root =$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

$(parent_element).append(this.root); this._init_header(this); this._init_canvas(this); this._init_toolbar(this); var fig = this; this.waiting = false; this.ws.onopen = function () { fig.send_message("supports_binary", {value: fig.supports_binary}); fig.send_message("send_image_mode", {}); fig.send_message("refresh", {}); } this.imageObj.onload = function() { if (fig.image_mode == 'full') { // Full images could contain transparency (where diff images // almost always do), so we need to clear the canvas so that // there is no ghosting. fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height); } fig.context.drawImage(fig.imageObj, 0, 0); }; this.imageObj.onunload = function() { this.ws.close(); } this.ws.onmessage = this._make_on_message_function(this); this.ondownload = ondownload; } mpl.figure.prototype._init_header = function() { var titlebar =$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = ( '<div class="ui-dialog-title" style="width: 100%; ' + 'text-align: center; padding: 3px;"/>'); titlebar.append(titletext) this.root.append(titlebar); this.header = titletext[0]; } mpl.figure.prototype._canvas_extra_style = function(canvas_div) { } mpl.figure.prototype._root_extra_style = function(canvas_div) { } mpl.figure.prototype._init_canvas = function() { var fig = this; var canvas_div =('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = $('<canvas/>'); canvas.addClass('mpl-canvas'); canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0") this.canvas = canvas[0]; this.context = canvas[0].getContext("2d"); var rubberband =$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
$(this.rubberband_canvas).bind("contextmenu",function(e){ return false; }); function set_focus () { canvas.focus(); canvas_div.focus(); } window.setTimeout(set_focus, 100); } mpl.figure.prototype._init_toolbar = function() { var fig = this; var nav_element =$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = $('<button/>'); button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' + 'ui-button-icon-only'); button.attr('role', 'button'); button.attr('aria-disabled', 'false'); button.click(method_name, toolbar_event); button.mouseover(tooltip, toolbar_mouse_event); var icon_img =$('<span/>');

var tooltip_span = $('<span/>'); tooltip_span.addClass('ui-button-text'); tooltip_span.html(tooltip); button.append(icon_img); button.append(tooltip_span); nav_element.append(button); } var fmt_picker_span =$('<span/>');

var fmt_picker = $('<select/>'); fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content'); fmt_picker_span.append(fmt_picker); nav_element.append(fmt_picker_span); this.format_dropdown = fmt_picker[0]; for (var ind in mpl.extensions) { var fmt = mpl.extensions[ind]; var option =$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
$( ".ui-button" ).hover( function() {$(this).addClass("ui-state-hover");},
function() { $(this).removeClass("ui-state-hover");} ); var status_bar =$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - $(targ).offset().left; var y = e.pageY -$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "jpeg", "pdf", "png", "ps", "raw", "svg", "tif"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = $("#" + id); var ws_proxy = comm_websocket_adapter(comm) function ondownload(figure, format) { window.open(figure.imageObj.src); } var fig = new mpl.figure(id, ws_proxy, ondownload, element.get(0)); // Call onopen now - mpl needs it, as it is assuming we've passed it a real // web socket which is closed, not our websocket->open comm proxy. ws_proxy.onopen(); fig.parent_element = element.get(0); fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>"); if (!fig.cell_info) { console.error("Failed to find cell for figure", id, fig); return; } var output_index = fig.cell_info[2] var cell = fig.cell_info[0]; }; mpl.figure.prototype.handle_close = function(fig, msg) { fig.root.unbind('remove') // Update the output cell to use the data from the current canvas. fig.push_to_output(); var dataURL = fig.canvas.toDataURL(); // Re-enable the keyboard manager in IPython - without this line, in FF, // the notebook keyboard shortcuts fail. IPython.keyboard_manager.enable()$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = $('<div/>') nav_element.attr('style', 'width: 100%'); this.root.append(nav_element); // Define a callback function for later on. function toolbar_event(event) { return fig.toolbar_button_onclick(event['data']); } function toolbar_mouse_event(event) { return fig.toolbar_button_onmouseover(event['data']); } for(var toolbar_ind in mpl.toolbar_items){ var name = mpl.toolbar_items[toolbar_ind][0]; var tooltip = mpl.toolbar_items[toolbar_ind][1]; var image = mpl.toolbar_items[toolbar_ind][2]; var method_name = mpl.toolbar_items[toolbar_ind][3]; if (!name) { continue; }; var button =$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = ('<span class="mpl-message" style="text-align:right; float: right;"/>'); nav_element.append(status_bar); this.message = status_bar[0]; // Add the close button to the window. var buttongrp =('<div class="btn-group inline pull-right"></div>');
var button = $('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>'); button.click(function (evt) { fig.handle_close(fig, {}); } ); button.mouseover('Stop Interaction', toolbar_mouse_event); buttongrp.append(button); var titlebar = this.root.find($('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}



## 範例5：以AstroML的LinearRegression來擬合pulse-profile

• AstroML 是一個專門用於天文資料的統計、探勘與機器學習的Python套件，雖然Anaconda沒有預先安裝此套件，不過可透過pip指令安裝:
pip install astroML



In [21]:

from astropy.io import ascii
pulse_profile = ascii.read('../files4examples/pulse-profile.txt', names=['phase', 'rate', 'error'])
phase = pulse_profile['phase']
rate =pulse_profile['rate']
error = pulse_profile['error']




In [22]:

import numpy as np
from astroML.linear_model import LinearRegression

x = np.array([np.sin(2 * np.pi * phase), np.cos(2 * np.pi * phase),
np.sin(4 * np.pi * phase), np.cos(4 * np.pi * phase)]).T

model = LinearRegression()
model.fit(x, rate, error)
coef = model.coef_
y_pred = model.predict(x)
print(coef)




[ 88.89855452  -0.76346906   2.11349999   0.70749647   0.63919169]




In [23]:

%matplotlib notebook
import matplotlib.pyplot as plt
phase2 =  np.append(phase, phase + 1)
rate2 = np.append(rate, rate)
error2 = np.append(error, error)
y_pred2 = np.append(y_pred, y_pred)

plt.figure()
plt.errorbar(phase2, rate2, yerr=error2,  fmt="*k", label='Data')
plt.hold(True)
plt.plot(phase2, y_pred2, 'r-', label='Model')
plt.hold(False)
plt.xlabel('Phase')
plt.ylabel('Conuts/s')
plt.legend()
plt.show()




var element = $('#916bd3b5-ebad-4a2a-a083-1d26a28d7a73'); /* Put everything inside the global mpl namespace */ window.mpl = {}; mpl.get_websocket_type = function() { if (typeof(WebSocket) !== 'undefined') { return WebSocket; } else if (typeof(MozWebSocket) !== 'undefined') { return MozWebSocket; } else { alert('Your browser does not have WebSocket support.' + 'Please try Chrome, Safari or Firefox ≥ 6. ' + 'Firefox 4 and 5 are also supported but you ' + 'have to enable WebSockets in about:config.'); }; } mpl.figure = function(figure_id, websocket, ondownload, parent_element) { this.id = figure_id; this.ws = websocket; this.supports_binary = (this.ws.binaryType != undefined); if (!this.supports_binary) { var warnings = document.getElementById("mpl-warnings"); if (warnings) { warnings.style.display = 'block'; warnings.textContent = ( "This browser does not support binary websocket messages. " + "Performance may be slow."); } } this.imageObj = new Image(); this.context = undefined; this.message = undefined; this.canvas = undefined; this.rubberband_canvas = undefined; this.rubberband_context = undefined; this.format_dropdown = undefined; this.image_mode = 'full'; this.root =$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

$(parent_element).append(this.root); this._init_header(this); this._init_canvas(this); this._init_toolbar(this); var fig = this; this.waiting = false; this.ws.onopen = function () { fig.send_message("supports_binary", {value: fig.supports_binary}); fig.send_message("send_image_mode", {}); fig.send_message("refresh", {}); } this.imageObj.onload = function() { if (fig.image_mode == 'full') { // Full images could contain transparency (where diff images // almost always do), so we need to clear the canvas so that // there is no ghosting. fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height); } fig.context.drawImage(fig.imageObj, 0, 0); }; this.imageObj.onunload = function() { this.ws.close(); } this.ws.onmessage = this._make_on_message_function(this); this.ondownload = ondownload; } mpl.figure.prototype._init_header = function() { var titlebar =$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = ( '<div class="ui-dialog-title" style="width: 100%; ' + 'text-align: center; padding: 3px;"/>'); titlebar.append(titletext) this.root.append(titlebar); this.header = titletext[0]; } mpl.figure.prototype._canvas_extra_style = function(canvas_div) { } mpl.figure.prototype._root_extra_style = function(canvas_div) { } mpl.figure.prototype._init_canvas = function() { var fig = this; var canvas_div =('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = $('<canvas/>'); canvas.addClass('mpl-canvas'); canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0") this.canvas = canvas[0]; this.context = canvas[0].getContext("2d"); var rubberband =$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
$(this.rubberband_canvas).bind("contextmenu",function(e){ return false; }); function set_focus () { canvas.focus(); canvas_div.focus(); } window.setTimeout(set_focus, 100); } mpl.figure.prototype._init_toolbar = function() { var fig = this; var nav_element =$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = $('<button/>'); button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' + 'ui-button-icon-only'); button.attr('role', 'button'); button.attr('aria-disabled', 'false'); button.click(method_name, toolbar_event); button.mouseover(tooltip, toolbar_mouse_event); var icon_img =$('<span/>');

var tooltip_span = $('<span/>'); tooltip_span.addClass('ui-button-text'); tooltip_span.html(tooltip); button.append(icon_img); button.append(tooltip_span); nav_element.append(button); } var fmt_picker_span =$('<span/>');

var fmt_picker = $('<select/>'); fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content'); fmt_picker_span.append(fmt_picker); nav_element.append(fmt_picker_span); this.format_dropdown = fmt_picker[0]; for (var ind in mpl.extensions) { var fmt = mpl.extensions[ind]; var option =$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
$( ".ui-button" ).hover( function() {$(this).addClass("ui-state-hover");},
function() { $(this).removeClass("ui-state-hover");} ); var status_bar =$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - $(targ).offset().left; var y = e.pageY -$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "jpeg", "pdf", "png", "ps", "raw", "svg", "tif"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = $("#" + id); var ws_proxy = comm_websocket_adapter(comm) function ondownload(figure, format) { window.open(figure.imageObj.src); } var fig = new mpl.figure(id, ws_proxy, ondownload, element.get(0)); // Call onopen now - mpl needs it, as it is assuming we've passed it a real // web socket which is closed, not our websocket->open comm proxy. ws_proxy.onopen(); fig.parent_element = element.get(0); fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>"); if (!fig.cell_info) { console.error("Failed to find cell for figure", id, fig); return; } var output_index = fig.cell_info[2] var cell = fig.cell_info[0]; }; mpl.figure.prototype.handle_close = function(fig, msg) { fig.root.unbind('remove') // Update the output cell to use the data from the current canvas. fig.push_to_output(); var dataURL = fig.canvas.toDataURL(); // Re-enable the keyboard manager in IPython - without this line, in FF, // the notebook keyboard shortcuts fail. IPython.keyboard_manager.enable()$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = $('<div/>') nav_element.attr('style', 'width: 100%'); this.root.append(nav_element); // Define a callback function for later on. function toolbar_event(event) { return fig.toolbar_button_onclick(event['data']); } function toolbar_mouse_event(event) { return fig.toolbar_button_onmouseover(event['data']); } for(var toolbar_ind in mpl.toolbar_items){ var name = mpl.toolbar_items[toolbar_ind][0]; var tooltip = mpl.toolbar_items[toolbar_ind][1]; var image = mpl.toolbar_items[toolbar_ind][2]; var method_name = mpl.toolbar_items[toolbar_ind][3]; if (!name) { continue; }; var button =$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = ('<span class="mpl-message" style="text-align:right; float: right;"/>'); nav_element.append(status_bar); this.message = status_bar[0]; // Add the close button to the window. var buttongrp =('<div class="btn-group inline pull-right"></div>');
var button = $('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>'); button.click(function (evt) { fig.handle_close(fig, {}); } ); button.mouseover('Stop Interaction', toolbar_mouse_event); buttongrp.append(button); var titlebar = this.root.find($('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}



## 範例6：以SciPy的curve_fit來擬合pulse-profile



In [24]:

from astropy.io import ascii
pulse_profile = ascii.read('../files4examples/pulse-profile.txt', names=['phase', 'rate', 'error'])
phase = pulse_profile['phase']
rate =pulse_profile['rate']
error = pulse_profile['error']




In [25]:

from scipy.optimize import curve_fit
import numpy as np

# 定義模型
def model(x, a0, a1, a2, a3, a4):
return ( a0 + a1 * np.sin(2 * np.pi * x) +  a2 * np.cos(2 * np.pi * x) +
a3 * np.sin(4 * np.pi * x) + a4 * np.cos(4 * np.pi * x) )

# 曲線擬合
popt, pcov = curve_fit(model, phase, rate, sigma=error)
perr = np.sqrt(np.diag(pcov))
print(popt)
print(pcov)
print("a0 =", popt[0], "+/-", perr[0])
print("a1 =", popt[1], "+/-", perr[1])
print("a2 =", popt[2], "+/-", perr[2])
print("a3 =", popt[3], "+/-", perr[3])
print("a4 =", popt[4], "+/-", perr[4])




[ 88.89855452  -0.76346889   2.11350003   0.70749648   0.63919159]
[[ 0.04283942 -0.00036791  0.00101848  0.00034094  0.00030802]
[-0.00036791  0.08536753  0.00034425  0.00092262  0.00060634]
[ 0.00101848  0.00034425  0.08598668 -0.00013985  0.00110847]
[ 0.00034094  0.00092262 -0.00013985  0.0858235  -0.00021854]
[ 0.00030802  0.00060634  0.00110847 -0.00021854  0.08550514]]
a0 = 88.8985545178 +/- 0.206976851602
a1 = -0.763468891908 +/- 0.292177216423
a2 = 2.11350003189 +/- 0.293234852344
a3 = 0.707496479272 +/- 0.292956479157
a4 = 0.639191589345 +/- 0.292412616802




In [26]:

%matplotlib notebook
import matplotlib.pyplot as plt
phase2 =  np.append(phase, phase + 1)
rate2 = np.append(rate, rate)
error2 = np.append(error, error)
plt.figure()
plt.errorbar(phase2, rate2, yerr=error2, fmt="*k", label='Data')
plt.hold(True)
plt.plot(phase2, model(phase2, popt[0], popt[1], popt[2], popt[3], popt[4]), 'r-', label='Model')
plt.hold(False)
plt.xlabel('Phase')
plt.ylabel('Conuts/s')
plt.legend()
plt.show()




var element = $('#810bf039-12cd-4ea9-82a5-2e26eebeed84'); /* Put everything inside the global mpl namespace */ window.mpl = {}; mpl.get_websocket_type = function() { if (typeof(WebSocket) !== 'undefined') { return WebSocket; } else if (typeof(MozWebSocket) !== 'undefined') { return MozWebSocket; } else { alert('Your browser does not have WebSocket support.' + 'Please try Chrome, Safari or Firefox ≥ 6. ' + 'Firefox 4 and 5 are also supported but you ' + 'have to enable WebSockets in about:config.'); }; } mpl.figure = function(figure_id, websocket, ondownload, parent_element) { this.id = figure_id; this.ws = websocket; this.supports_binary = (this.ws.binaryType != undefined); if (!this.supports_binary) { var warnings = document.getElementById("mpl-warnings"); if (warnings) { warnings.style.display = 'block'; warnings.textContent = ( "This browser does not support binary websocket messages. " + "Performance may be slow."); } } this.imageObj = new Image(); this.context = undefined; this.message = undefined; this.canvas = undefined; this.rubberband_canvas = undefined; this.rubberband_context = undefined; this.format_dropdown = undefined; this.image_mode = 'full'; this.root =$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

$(parent_element).append(this.root); this._init_header(this); this._init_canvas(this); this._init_toolbar(this); var fig = this; this.waiting = false; this.ws.onopen = function () { fig.send_message("supports_binary", {value: fig.supports_binary}); fig.send_message("send_image_mode", {}); fig.send_message("refresh", {}); } this.imageObj.onload = function() { if (fig.image_mode == 'full') { // Full images could contain transparency (where diff images // almost always do), so we need to clear the canvas so that // there is no ghosting. fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height); } fig.context.drawImage(fig.imageObj, 0, 0); }; this.imageObj.onunload = function() { this.ws.close(); } this.ws.onmessage = this._make_on_message_function(this); this.ondownload = ondownload; } mpl.figure.prototype._init_header = function() { var titlebar =$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = ( '<div class="ui-dialog-title" style="width: 100%; ' + 'text-align: center; padding: 3px;"/>'); titlebar.append(titletext) this.root.append(titlebar); this.header = titletext[0]; } mpl.figure.prototype._canvas_extra_style = function(canvas_div) { } mpl.figure.prototype._root_extra_style = function(canvas_div) { } mpl.figure.prototype._init_canvas = function() { var fig = this; var canvas_div =('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = $('<canvas/>'); canvas.addClass('mpl-canvas'); canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0") this.canvas = canvas[0]; this.context = canvas[0].getContext("2d"); var rubberband =$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
$(this.rubberband_canvas).bind("contextmenu",function(e){ return false; }); function set_focus () { canvas.focus(); canvas_div.focus(); } window.setTimeout(set_focus, 100); } mpl.figure.prototype._init_toolbar = function() { var fig = this; var nav_element =$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = $('<button/>'); button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' + 'ui-button-icon-only'); button.attr('role', 'button'); button.attr('aria-disabled', 'false'); button.click(method_name, toolbar_event); button.mouseover(tooltip, toolbar_mouse_event); var icon_img =$('<span/>');

var tooltip_span = $('<span/>'); tooltip_span.addClass('ui-button-text'); tooltip_span.html(tooltip); button.append(icon_img); button.append(tooltip_span); nav_element.append(button); } var fmt_picker_span =$('<span/>');

var fmt_picker = $('<select/>'); fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content'); fmt_picker_span.append(fmt_picker); nav_element.append(fmt_picker_span); this.format_dropdown = fmt_picker[0]; for (var ind in mpl.extensions) { var fmt = mpl.extensions[ind]; var option =$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
$( ".ui-button" ).hover( function() {$(this).addClass("ui-state-hover");},
function() { $(this).removeClass("ui-state-hover");} ); var status_bar =$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - $(targ).offset().left; var y = e.pageY -$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "jpeg", "pdf", "png", "ps", "raw", "svg", "tif"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = $("#" + id); var ws_proxy = comm_websocket_adapter(comm) function ondownload(figure, format) { window.open(figure.imageObj.src); } var fig = new mpl.figure(id, ws_proxy, ondownload, element.get(0)); // Call onopen now - mpl needs it, as it is assuming we've passed it a real // web socket which is closed, not our websocket->open comm proxy. ws_proxy.onopen(); fig.parent_element = element.get(0); fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>"); if (!fig.cell_info) { console.error("Failed to find cell for figure", id, fig); return; } var output_index = fig.cell_info[2] var cell = fig.cell_info[0]; }; mpl.figure.prototype.handle_close = function(fig, msg) { fig.root.unbind('remove') // Update the output cell to use the data from the current canvas. fig.push_to_output(); var dataURL = fig.canvas.toDataURL(); // Re-enable the keyboard manager in IPython - without this line, in FF, // the notebook keyboard shortcuts fail. IPython.keyboard_manager.enable()$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = $('<div/>') nav_element.attr('style', 'width: 100%'); this.root.append(nav_element); // Define a callback function for later on. function toolbar_event(event) { return fig.toolbar_button_onclick(event['data']); } function toolbar_mouse_event(event) { return fig.toolbar_button_onmouseover(event['data']); } for(var toolbar_ind in mpl.toolbar_items){ var name = mpl.toolbar_items[toolbar_ind][0]; var tooltip = mpl.toolbar_items[toolbar_ind][1]; var image = mpl.toolbar_items[toolbar_ind][2]; var method_name = mpl.toolbar_items[toolbar_ind][3]; if (!name) { continue; }; var button =$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = ('<span class="mpl-message" style="text-align:right; float: right;"/>'); nav_element.append(status_bar); this.message = status_bar[0]; // Add the close button to the window. var buttongrp =('<div class="btn-group inline pull-right"></div>');
var button = $('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>'); button.click(function (evt) { fig.handle_close(fig, {}); } ); button.mouseover('Stop Interaction', toolbar_mouse_event); buttongrp.append(button); var titlebar = this.root.find($('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}



## 範例7：以astropy.modeling中的一維高斯曲線擬合QSO數量分佈



In [27]:

from astropy.io import ascii
x = data['x']
y = data['y']




In [28]:

from astropy.modeling import models as mo, fitting as fit
import numpy as np
model_init = mo.Gaussian1D(amplitude=4220, mean=-0.25, stddev=0.1)
fitter = fit.LevMarLSQFitter()
fit_res = fitter(model_init, x, y)
print(fit_res.amplitude)
print(fit_res.mean)
print(fit_res.stddev)




Parameter('amplitude', value=4078.8970040617974)
Parameter('mean', value=-0.17176406050119747)
Parameter('stddev', value=0.045674628679433164)




In [29]:

%matplotlib notebook
import matplotlib.pyplot as plt
fig = plt.figure()
plt.bar(x, y, width=x[1]-x[0], align='center', edgecolor='black', fill=False)
plt.hold(True)
plt.plot(x, fit_res(x), 'r')
plt.hold(False)
plt.xlim(-0.6, 0.6)
plt.ylim(0, 5000)
plt.xlabel('log($f_{\lambda_{3100A}}$ / $f_{\lambda_{2200A}}$)', fontsize=20)
plt.ylabel('Numbers of QSO', fontsize=20)
ax.tick_params(axis='y', labelsize=20)
plt.xticks(np.arange(-0.4,0.5,0.2), fontsize=20)
plt.show()




var element = $('#f0305513-7663-4fb9-8bef-78d8caeea8b0'); /* Put everything inside the global mpl namespace */ window.mpl = {}; mpl.get_websocket_type = function() { if (typeof(WebSocket) !== 'undefined') { return WebSocket; } else if (typeof(MozWebSocket) !== 'undefined') { return MozWebSocket; } else { alert('Your browser does not have WebSocket support.' + 'Please try Chrome, Safari or Firefox ≥ 6. ' + 'Firefox 4 and 5 are also supported but you ' + 'have to enable WebSockets in about:config.'); }; } mpl.figure = function(figure_id, websocket, ondownload, parent_element) { this.id = figure_id; this.ws = websocket; this.supports_binary = (this.ws.binaryType != undefined); if (!this.supports_binary) { var warnings = document.getElementById("mpl-warnings"); if (warnings) { warnings.style.display = 'block'; warnings.textContent = ( "This browser does not support binary websocket messages. " + "Performance may be slow."); } } this.imageObj = new Image(); this.context = undefined; this.message = undefined; this.canvas = undefined; this.rubberband_canvas = undefined; this.rubberband_context = undefined; this.format_dropdown = undefined; this.image_mode = 'full'; this.root =$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

$(parent_element).append(this.root); this._init_header(this); this._init_canvas(this); this._init_toolbar(this); var fig = this; this.waiting = false; this.ws.onopen = function () { fig.send_message("supports_binary", {value: fig.supports_binary}); fig.send_message("send_image_mode", {}); fig.send_message("refresh", {}); } this.imageObj.onload = function() { if (fig.image_mode == 'full') { // Full images could contain transparency (where diff images // almost always do), so we need to clear the canvas so that // there is no ghosting. fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height); } fig.context.drawImage(fig.imageObj, 0, 0); }; this.imageObj.onunload = function() { this.ws.close(); } this.ws.onmessage = this._make_on_message_function(this); this.ondownload = ondownload; } mpl.figure.prototype._init_header = function() { var titlebar =$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = ( '<div class="ui-dialog-title" style="width: 100%; ' + 'text-align: center; padding: 3px;"/>'); titlebar.append(titletext) this.root.append(titlebar); this.header = titletext[0]; } mpl.figure.prototype._canvas_extra_style = function(canvas_div) { } mpl.figure.prototype._root_extra_style = function(canvas_div) { } mpl.figure.prototype._init_canvas = function() { var fig = this; var canvas_div =('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = $('<canvas/>'); canvas.addClass('mpl-canvas'); canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0") this.canvas = canvas[0]; this.context = canvas[0].getContext("2d"); var rubberband =$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
$(this.rubberband_canvas).bind("contextmenu",function(e){ return false; }); function set_focus () { canvas.focus(); canvas_div.focus(); } window.setTimeout(set_focus, 100); } mpl.figure.prototype._init_toolbar = function() { var fig = this; var nav_element =$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = $('<button/>'); button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' + 'ui-button-icon-only'); button.attr('role', 'button'); button.attr('aria-disabled', 'false'); button.click(method_name, toolbar_event); button.mouseover(tooltip, toolbar_mouse_event); var icon_img =$('<span/>');

var tooltip_span = $('<span/>'); tooltip_span.addClass('ui-button-text'); tooltip_span.html(tooltip); button.append(icon_img); button.append(tooltip_span); nav_element.append(button); } var fmt_picker_span =$('<span/>');

var fmt_picker = $('<select/>'); fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content'); fmt_picker_span.append(fmt_picker); nav_element.append(fmt_picker_span); this.format_dropdown = fmt_picker[0]; for (var ind in mpl.extensions) { var fmt = mpl.extensions[ind]; var option =$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
$( ".ui-button" ).hover( function() {$(this).addClass("ui-state-hover");},
function() { $(this).removeClass("ui-state-hover");} ); var status_bar =$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - $(targ).offset().left; var y = e.pageY -$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "jpeg", "pdf", "png", "ps", "raw", "svg", "tif"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = $("#" + id); var ws_proxy = comm_websocket_adapter(comm) function ondownload(figure, format) { window.open(figure.imageObj.src); } var fig = new mpl.figure(id, ws_proxy, ondownload, element.get(0)); // Call onopen now - mpl needs it, as it is assuming we've passed it a real // web socket which is closed, not our websocket->open comm proxy. ws_proxy.onopen(); fig.parent_element = element.get(0); fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>"); if (!fig.cell_info) { console.error("Failed to find cell for figure", id, fig); return; } var output_index = fig.cell_info[2] var cell = fig.cell_info[0]; }; mpl.figure.prototype.handle_close = function(fig, msg) { fig.root.unbind('remove') // Update the output cell to use the data from the current canvas. fig.push_to_output(); var dataURL = fig.canvas.toDataURL(); // Re-enable the keyboard manager in IPython - without this line, in FF, // the notebook keyboard shortcuts fail. IPython.keyboard_manager.enable()$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = $('<div/>') nav_element.attr('style', 'width: 100%'); this.root.append(nav_element); // Define a callback function for later on. function toolbar_event(event) { return fig.toolbar_button_onclick(event['data']); } function toolbar_mouse_event(event) { return fig.toolbar_button_onmouseover(event['data']); } for(var toolbar_ind in mpl.toolbar_items){ var name = mpl.toolbar_items[toolbar_ind][0]; var tooltip = mpl.toolbar_items[toolbar_ind][1]; var image = mpl.toolbar_items[toolbar_ind][2]; var method_name = mpl.toolbar_items[toolbar_ind][3]; if (!name) { continue; }; var button =$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = ('<span class="mpl-message" style="text-align:right; float: right;"/>'); nav_element.append(status_bar); this.message = status_bar[0]; // Add the close button to the window. var buttongrp =('<div class="btn-group inline pull-right"></div>');
var button = $('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>'); button.click(function (evt) { fig.handle_close(fig, {}); } ); button.mouseover('Stop Interaction', toolbar_mouse_event); buttongrp.append(button); var titlebar = this.root.find($('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}



## 範例8：以astropy.modeling中多個sin的疊加來擬合pulse-profile



In [30]:

from astropy.io import ascii
pulse_profile = ascii.read('../files4examples/pulse-profile.txt', names=['phase', 'rate', 'error'])
phase = pulse_profile['phase']
rate =pulse_profile['rate']
error = pulse_profile['error']




In [31]:

from astropy.modeling import models as mo, fitting as fit
import numpy as np

# 不給初始值， 使用預設初始值
mo_init = (mo.Const1D() +
mo.Sine1D(frequency=1, fixed={'frequency':True, 'phase':True}) +
mo.Sine1D(frequency=1, phase=0.25, fixed={'frequency':True, 'phase':True}) +
mo.Sine1D(frequency=2, fixed={'frequency':True, 'phase':True}) +
mo.Sine1D(frequency=2, phase=0.25, fixed={'frequency':True, 'phase':True}))
# 給初始值
# mo_init = (mo.Const1D(amplitude=np.mean(rate)) +
#            mo.Sine1D(amplitude=-0.7, frequency=1, fixed={'frequency':True, 'phase':True}) +
#            mo.Sine1D(amplitude=2, frequency=1, phase=0.25, fixed={'frequency':True, 'phase':True}) +
#            mo.Sine1D(amplitude=0.7, frequency=2, fixed={'frequency':True, 'phase':True}) +
#            mo.Sine1D(amplitude=0.6, frequency=2, phase=0.25, fixed={'frequency':True, 'phase':True}))

fitter = fit.LevMarLSQFitter()
fit_res = fitter(mo_init, phase, rate)
a0 = fit_res.amplitude_0.value
a1 = fit_res.amplitude_1.value
a2 = fit_res.amplitude_2.value
a3 = fit_res.amplitude_3.value
a4 = fit_res.amplitude_4.value
print(a0, a1, a2, a3, a4)




88.9115655625 -0.760649544662 2.11718251275 0.717100412576 0.639133194806




In [32]:

%matplotlib notebook
import matplotlib.pyplot as plt
phase2 =  np.append(phase, phase + 1)
rate2 = np.append(rate, rate)
error2 = np.append(error, error)
plt.figure()
plt.errorbar(phase2, rate2, yerr=error2, fmt='*k')
plt.hold(True)
plt.plot(phase2, fit_res(phase2), 'r')
plt.hold(False)
plt.legend(('Model', 'Data'))
plt.xlabel('Phase')
plt.ylabel('Conuts/s')
plt.show()




var element = $('#ca50598b-2678-4103-9074-e65f1b9f3e95'); /* Put everything inside the global mpl namespace */ window.mpl = {}; mpl.get_websocket_type = function() { if (typeof(WebSocket) !== 'undefined') { return WebSocket; } else if (typeof(MozWebSocket) !== 'undefined') { return MozWebSocket; } else { alert('Your browser does not have WebSocket support.' + 'Please try Chrome, Safari or Firefox ≥ 6. ' + 'Firefox 4 and 5 are also supported but you ' + 'have to enable WebSockets in about:config.'); }; } mpl.figure = function(figure_id, websocket, ondownload, parent_element) { this.id = figure_id; this.ws = websocket; this.supports_binary = (this.ws.binaryType != undefined); if (!this.supports_binary) { var warnings = document.getElementById("mpl-warnings"); if (warnings) { warnings.style.display = 'block'; warnings.textContent = ( "This browser does not support binary websocket messages. " + "Performance may be slow."); } } this.imageObj = new Image(); this.context = undefined; this.message = undefined; this.canvas = undefined; this.rubberband_canvas = undefined; this.rubberband_context = undefined; this.format_dropdown = undefined; this.image_mode = 'full'; this.root =$('<div/>');
this._root_extra_style(this.root)
this.root.attr('style', 'display: inline-block');

$(parent_element).append(this.root); this._init_header(this); this._init_canvas(this); this._init_toolbar(this); var fig = this; this.waiting = false; this.ws.onopen = function () { fig.send_message("supports_binary", {value: fig.supports_binary}); fig.send_message("send_image_mode", {}); fig.send_message("refresh", {}); } this.imageObj.onload = function() { if (fig.image_mode == 'full') { // Full images could contain transparency (where diff images // almost always do), so we need to clear the canvas so that // there is no ghosting. fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height); } fig.context.drawImage(fig.imageObj, 0, 0); }; this.imageObj.onunload = function() { this.ws.close(); } this.ws.onmessage = this._make_on_message_function(this); this.ondownload = ondownload; } mpl.figure.prototype._init_header = function() { var titlebar =$(
'<div class="ui-dialog-titlebar ui-widget-header ui-corner-all ' +
'ui-helper-clearfix"/>');
var titletext = ( '<div class="ui-dialog-title" style="width: 100%; ' + 'text-align: center; padding: 3px;"/>'); titlebar.append(titletext) this.root.append(titlebar); this.header = titletext[0]; } mpl.figure.prototype._canvas_extra_style = function(canvas_div) { } mpl.figure.prototype._root_extra_style = function(canvas_div) { } mpl.figure.prototype._init_canvas = function() { var fig = this; var canvas_div =('<div/>');

canvas_div.attr('style', 'position: relative; clear: both; outline: 0');

function canvas_keyboard_event(event) {
return fig.key_event(event, event['data']);
}

canvas_div.keydown('key_press', canvas_keyboard_event);
canvas_div.keyup('key_release', canvas_keyboard_event);
this.canvas_div = canvas_div
this._canvas_extra_style(canvas_div)
this.root.append(canvas_div);

var canvas = $('<canvas/>'); canvas.addClass('mpl-canvas'); canvas.attr('style', "left: 0; top: 0; z-index: 0; outline: 0") this.canvas = canvas[0]; this.context = canvas[0].getContext("2d"); var rubberband =$('<canvas/>');
rubberband.attr('style', "position: absolute; left: 0; top: 0; z-index: 1;")

var pass_mouse_events = true;

canvas_div.resizable({
start: function(event, ui) {
pass_mouse_events = false;
},
resize: function(event, ui) {
fig.request_resize(ui.size.width, ui.size.height);
},
stop: function(event, ui) {
pass_mouse_events = true;
fig.request_resize(ui.size.width, ui.size.height);
},
});

function mouse_event_fn(event) {
if (pass_mouse_events)
return fig.mouse_event(event, event['data']);
}

rubberband.mousedown('button_press', mouse_event_fn);
rubberband.mouseup('button_release', mouse_event_fn);
// Throttle sequential mouse events to 1 every 20ms.
rubberband.mousemove('motion_notify', mouse_event_fn);

rubberband.mouseenter('figure_enter', mouse_event_fn);
rubberband.mouseleave('figure_leave', mouse_event_fn);

canvas_div.on("wheel", function (event) {
event = event.originalEvent;
event['data'] = 'scroll'
if (event.deltaY < 0) {
event.step = 1;
} else {
event.step = -1;
}
mouse_event_fn(event);
});

canvas_div.append(canvas);
canvas_div.append(rubberband);

this.rubberband = rubberband;
this.rubberband_canvas = rubberband[0];
this.rubberband_context = rubberband[0].getContext("2d");
this.rubberband_context.strokeStyle = "#000000";

this._resize_canvas = function(width, height) {
// Keep the size of the canvas, canvas container, and rubber band
// canvas in synch.
canvas_div.css('width', width)
canvas_div.css('height', height)

canvas.attr('width', width);
canvas.attr('height', height);

rubberband.attr('width', width);
rubberband.attr('height', height);
}

// Set the figure to an initial 600x600px, this will subsequently be updated
// upon first draw.
this._resize_canvas(600, 600);

// Disable right mouse context menu.
$(this.rubberband_canvas).bind("contextmenu",function(e){ return false; }); function set_focus () { canvas.focus(); canvas_div.focus(); } window.setTimeout(set_focus, 100); } mpl.figure.prototype._init_toolbar = function() { var fig = this; var nav_element =$('<div/>')
nav_element.attr('style', 'width: 100%');
this.root.append(nav_element);

// Define a callback function for later on.
function toolbar_event(event) {
return fig.toolbar_button_onclick(event['data']);
}
function toolbar_mouse_event(event) {
return fig.toolbar_button_onmouseover(event['data']);
}

for(var toolbar_ind in mpl.toolbar_items) {
var name = mpl.toolbar_items[toolbar_ind][0];
var tooltip = mpl.toolbar_items[toolbar_ind][1];
var image = mpl.toolbar_items[toolbar_ind][2];
var method_name = mpl.toolbar_items[toolbar_ind][3];

if (!name) {
// put a spacer in here.
continue;
}
var button = $('<button/>'); button.addClass('ui-button ui-widget ui-state-default ui-corner-all ' + 'ui-button-icon-only'); button.attr('role', 'button'); button.attr('aria-disabled', 'false'); button.click(method_name, toolbar_event); button.mouseover(tooltip, toolbar_mouse_event); var icon_img =$('<span/>');

var tooltip_span = $('<span/>'); tooltip_span.addClass('ui-button-text'); tooltip_span.html(tooltip); button.append(icon_img); button.append(tooltip_span); nav_element.append(button); } var fmt_picker_span =$('<span/>');

var fmt_picker = $('<select/>'); fmt_picker.addClass('mpl-toolbar-option ui-widget ui-widget-content'); fmt_picker_span.append(fmt_picker); nav_element.append(fmt_picker_span); this.format_dropdown = fmt_picker[0]; for (var ind in mpl.extensions) { var fmt = mpl.extensions[ind]; var option =$(
'<option/>', {selected: fmt === mpl.default_extension}).html(fmt);
fmt_picker.append(option)
}

// Add hover states to the ui-buttons
$( ".ui-button" ).hover( function() {$(this).addClass("ui-state-hover");},
function() { $(this).removeClass("ui-state-hover");} ); var status_bar =$('<span class="mpl-message"/>');
nav_element.append(status_bar);
this.message = status_bar[0];
}

mpl.figure.prototype.request_resize = function(x_pixels, y_pixels) {
// Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,
// which will in turn request a refresh of the image.
this.send_message('resize', {'width': x_pixels, 'height': y_pixels});
}

mpl.figure.prototype.send_message = function(type, properties) {
properties['type'] = type;
properties['figure_id'] = this.id;
this.ws.send(JSON.stringify(properties));
}

mpl.figure.prototype.send_draw_message = function() {
if (!this.waiting) {
this.waiting = true;
this.ws.send(JSON.stringify({type: "draw", figure_id: this.id}));
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
var format_dropdown = fig.format_dropdown;
var format = format_dropdown.options[format_dropdown.selectedIndex].value;
}

mpl.figure.prototype.handle_resize = function(fig, msg) {
var size = msg['size'];
if (size[0] != fig.canvas.width || size[1] != fig.canvas.height) {
fig._resize_canvas(size[0], size[1]);
fig.send_message("refresh", {});
};
}

mpl.figure.prototype.handle_rubberband = function(fig, msg) {
var x0 = msg['x0'];
var y0 = fig.canvas.height - msg['y0'];
var x1 = msg['x1'];
var y1 = fig.canvas.height - msg['y1'];
x0 = Math.floor(x0) + 0.5;
y0 = Math.floor(y0) + 0.5;
x1 = Math.floor(x1) + 0.5;
y1 = Math.floor(y1) + 0.5;
var min_x = Math.min(x0, x1);
var min_y = Math.min(y0, y1);
var width = Math.abs(x1 - x0);
var height = Math.abs(y1 - y0);

fig.rubberband_context.clearRect(
0, 0, fig.canvas.width, fig.canvas.height);

fig.rubberband_context.strokeRect(min_x, min_y, width, height);
}

mpl.figure.prototype.handle_figure_label = function(fig, msg) {
}

mpl.figure.prototype.handle_cursor = function(fig, msg) {
var cursor = msg['cursor'];
switch(cursor)
{
case 0:
cursor = 'pointer';
break;
case 1:
cursor = 'default';
break;
case 2:
cursor = 'crosshair';
break;
case 3:
cursor = 'move';
break;
}
fig.rubberband_canvas.style.cursor = cursor;
}

mpl.figure.prototype.handle_message = function(fig, msg) {
fig.message.textContent = msg['message'];
}

mpl.figure.prototype.handle_draw = function(fig, msg) {
// Request the server to send over a new figure.
fig.send_draw_message();
}

mpl.figure.prototype.handle_image_mode = function(fig, msg) {
fig.image_mode = msg['mode'];
}

mpl.figure.prototype.updated_canvas_event = function() {
// Called whenever the canvas gets updated.
this.send_message("ack", {});
}

// A function to construct a web socket function for onmessage handling.
// Called in the figure constructor.
mpl.figure.prototype._make_on_message_function = function(fig) {
return function socket_on_message(evt) {
if (evt.data instanceof Blob) {
/* FIXME: We get "Resource interpreted as Image but
* transferred with MIME type text/plain:" errors on
* Chrome.  But how to set the MIME type?  It doesn't seem
* to be part of the websocket stream */
evt.data.type = "image/png";

/* Free the memory for the previous frames */
if (fig.imageObj.src) {
(window.URL || window.webkitURL).revokeObjectURL(
fig.imageObj.src);
}

fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(
evt.data);
fig.updated_canvas_event();
fig.waiting = false;
return;
}
else if (typeof evt.data === 'string' && evt.data.slice(0, 21) == "data:image/png;base64") {
fig.imageObj.src = evt.data;
fig.updated_canvas_event();
fig.waiting = false;
return;
}

var msg = JSON.parse(evt.data);
var msg_type = msg['type'];

// Call the  "handle_{type}" callback, which takes
// the figure and JSON message as its only arguments.
try {
var callback = fig["handle_" + msg_type];
} catch (e) {
console.log("No handler for the '" + msg_type + "' message type: ", msg);
return;
}

if (callback) {
try {
// console.log("Handling '" + msg_type + "' message: ", msg);
callback(fig, msg);
} catch (e) {
console.log("Exception inside the 'handler_" + msg_type + "' callback:", e, e.stack, msg);
}
}
};
}

// from http://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas
mpl.findpos = function(e) {
//this section is from http://www.quirksmode.org/js/events_properties.html
var targ;
if (!e)
e = window.event;
if (e.target)
targ = e.target;
else if (e.srcElement)
targ = e.srcElement;
if (targ.nodeType == 3) // defeat Safari bug
targ = targ.parentNode;

// jQuery normalizes the pageX and pageY
// pageX,Y are the mouse positions relative to the document
// offset() returns the position of the element relative to the document
var x = e.pageX - $(targ).offset().left; var y = e.pageY -$(targ).offset().top;

return {"x": x, "y": y};
};

/*
* return a copy of an object with only non-object keys
* we need this to avoid circular references
* http://stackoverflow.com/a/24161582/3208463
*/
function simpleKeys (original) {
return Object.keys(original).reduce(function (obj, key) {
if (typeof original[key] !== 'object')
obj[key] = original[key]
return obj;
}, {});
}

mpl.figure.prototype.mouse_event = function(event, name) {
var canvas_pos = mpl.findpos(event)

if (name === 'button_press')
{
this.canvas.focus();
this.canvas_div.focus();
}

var x = canvas_pos.x;
var y = canvas_pos.y;

this.send_message(name, {x: x, y: y, button: event.button,
step: event.step,
guiEvent: simpleKeys(event)});

/* This prevents the web browser from automatically changing to
* the text insertion cursor when the button is pressed.  We want
* to control all of the cursor setting manually through the
* 'cursor' event from matplotlib */
event.preventDefault();
return false;
}

mpl.figure.prototype._key_event_extra = function(event, name) {
// Handle any extra behaviour associated with a key event
}

mpl.figure.prototype.key_event = function(event, name) {

// Prevent repeat events
if (name == 'key_press')
{
if (event.which === this._key)
return;
else
this._key = event.which;
}
if (name == 'key_release')
this._key = null;

var value = '';
if (event.ctrlKey && event.which != 17)
value += "ctrl+";
if (event.altKey && event.which != 18)
value += "alt+";
if (event.shiftKey && event.which != 16)
value += "shift+";

value += 'k';
value += event.which.toString();

this._key_event_extra(event, name);

this.send_message(name, {key: value,
guiEvent: simpleKeys(event)});
return false;
}

mpl.figure.prototype.toolbar_button_onclick = function(name) {
this.handle_save(this, null);
} else {
this.send_message("toolbar_button", {name: name});
}
};

mpl.figure.prototype.toolbar_button_onmouseover = function(tooltip) {
this.message.textContent = tooltip;
};
mpl.toolbar_items = [["Home", "Reset original view", "fa fa-home icon-home", "home"], ["Back", "Back to  previous view", "fa fa-arrow-left icon-arrow-left", "back"], ["Forward", "Forward to next view", "fa fa-arrow-right icon-arrow-right", "forward"], ["", "", "", ""], ["Pan", "Pan axes with left mouse, zoom with right", "fa fa-arrows icon-move", "pan"], ["Zoom", "Zoom to rectangle", "fa fa-square-o icon-check-empty", "zoom"], ["", "", "", ""], ["Download", "Download plot", "fa fa-floppy-o icon-save", "download"]];

mpl.extensions = ["eps", "jpeg", "pdf", "png", "ps", "raw", "svg", "tif"];

mpl.default_extension = "png";var comm_websocket_adapter = function(comm) {
// Create a "websocket"-like object which calls the given IPython comm
// object with the appropriate methods. Currently this is a non binary
// socket, so there is still some room for performance tuning.
var ws = {};

ws.close = function() {
comm.close()
};
ws.send = function(m) {
//console.log('sending', m);
comm.send(m);
};
// Register the callback with on_msg.
comm.on_msg(function(msg) {
//console.log('receiving', msg['content']['data'], msg);
// Pass the mpl event to the overriden (by mpl) onmessage function.
ws.onmessage(msg['content']['data'])
});
return ws;
}

mpl.mpl_figure_comm = function(comm, msg) {
// This is the function which gets called when the mpl process
// starts-up an IPython Comm through the "matplotlib" channel.

var id = msg.content.data.id;
// Get hold of the div created by the display call when the Comm
// socket was opened in Python.
var element = $("#" + id); var ws_proxy = comm_websocket_adapter(comm) function ondownload(figure, format) { window.open(figure.imageObj.src); } var fig = new mpl.figure(id, ws_proxy, ondownload, element.get(0)); // Call onopen now - mpl needs it, as it is assuming we've passed it a real // web socket which is closed, not our websocket->open comm proxy. ws_proxy.onopen(); fig.parent_element = element.get(0); fig.cell_info = mpl.find_output_cell("<div id='" + id + "'></div>"); if (!fig.cell_info) { console.error("Failed to find cell for figure", id, fig); return; } var output_index = fig.cell_info[2] var cell = fig.cell_info[0]; }; mpl.figure.prototype.handle_close = function(fig, msg) { fig.root.unbind('remove') // Update the output cell to use the data from the current canvas. fig.push_to_output(); var dataURL = fig.canvas.toDataURL(); // Re-enable the keyboard manager in IPython - without this line, in FF, // the notebook keyboard shortcuts fail. IPython.keyboard_manager.enable()$(fig.parent_element).html('<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">');
fig.close_ws(fig, msg);
}

mpl.figure.prototype.close_ws = function(fig, msg){
fig.send_message('closing', msg);
// fig.ws.close()
}

mpl.figure.prototype.push_to_output = function(remove_interactive) {
// Turn the data on the canvas into data in the output cell.
var dataURL = this.canvas.toDataURL();
this.cell_info[1]['text/html'] = '<amp-img layout="responsive" width="500" height="300" src="' + dataURL + '">';
}

mpl.figure.prototype.updated_canvas_event = function() {
// Tell IPython that the notebook contents must change.
IPython.notebook.set_dirty(true);
this.send_message("ack", {});
var fig = this;
// Wait a second, then push the new image to the DOM so
// that it is saved nicely (might be nice to debounce this).
setTimeout(function () { fig.push_to_output() }, 1000);
}

mpl.figure.prototype._init_toolbar = function() {
var fig = this;

var nav_element = $('<div/>') nav_element.attr('style', 'width: 100%'); this.root.append(nav_element); // Define a callback function for later on. function toolbar_event(event) { return fig.toolbar_button_onclick(event['data']); } function toolbar_mouse_event(event) { return fig.toolbar_button_onmouseover(event['data']); } for(var toolbar_ind in mpl.toolbar_items){ var name = mpl.toolbar_items[toolbar_ind][0]; var tooltip = mpl.toolbar_items[toolbar_ind][1]; var image = mpl.toolbar_items[toolbar_ind][2]; var method_name = mpl.toolbar_items[toolbar_ind][3]; if (!name) { continue; }; var button =$('<button class="btn btn-default" href="#" title="' + name + '"><i class="fa ' + image + ' fa-lg"></i></button>');
button.click(method_name, toolbar_event);
button.mouseover(tooltip, toolbar_mouse_event);
nav_element.append(button);
}

var status_bar = ('<span class="mpl-message" style="text-align:right; float: right;"/>'); nav_element.append(status_bar); this.message = status_bar[0]; // Add the close button to the window. var buttongrp =('<div class="btn-group inline pull-right"></div>');
var button = $('<button class="btn btn-mini btn-primary" href="#" title="Stop Interaction"><i class="fa fa-power-off icon-remove icon-large"></i></button>'); button.click(function (evt) { fig.handle_close(fig, {}); } ); button.mouseover('Stop Interaction', toolbar_mouse_event); buttongrp.append(button); var titlebar = this.root.find($('.ui-dialog-titlebar'));
titlebar.prepend(buttongrp);
}

mpl.figure.prototype._root_extra_style = function(el){
var fig = this
el.on("remove", function(){
fig.close_ws(fig, {});
});
}

mpl.figure.prototype._canvas_extra_style = function(el){
// this is important to make the div 'focusable
el.attr('tabindex', 0)
// reach out to IPython and tell the keyboard manager to turn it's self
// off when our div gets focus

// location in version 3
if (IPython.notebook.keyboard_manager) {
IPython.notebook.keyboard_manager.register_events(el);
}
else {
// location in version 2
IPython.keyboard_manager.register_events(el);
}

}

mpl.figure.prototype._key_event_extra = function(event, name) {
var manager = IPython.notebook.keyboard_manager;
if (!manager)
manager = IPython.keyboard_manager;

// Check for shift+enter
if (event.shiftKey && event.which == 13) {
this.canvas_div.blur();
event.shiftKey = false;
// Send a "J" for go to next cell
event.which = 74;
event.keyCode = 74;
manager.command_mode();
manager.handle_keydown(event);
}
}

mpl.figure.prototype.handle_save = function(fig, msg) {
}

mpl.find_output_cell = function(html_output) {
// Return the cell and output element which can be found *uniquely* in the notebook.
// Note - this is a bit hacky, but it is done because the "notebook_saving.Notebook"
// IPython event is triggered only after the cells have been serialised, which for
// our purposes (turning an active figure into a static one), is too late.
var cells = IPython.notebook.get_cells();
var ncells = cells.length;
for (var i=0; i<ncells; i++) {
var cell = cells[i];
if (cell.cell_type === 'code'){
for (var j=0; j<cell.output_area.outputs.length; j++) {
var data = cell.output_area.outputs[j];
if (data.data) {
// IPython >= 3 moved mimebundle to data attribute of output
data = data.data;
}
if (data['text/html'] == html_output) {
return [cell, data, j];
}
}
}
}
}

// Register the function which deals with the matplotlib target/channel.
// The kernel may be null if the page has been refreshed.
if (IPython.notebook.kernel != null) {
IPython.notebook.kernel.comm_manager.register_target('matplotlib', mpl.mpl_figure_comm);
}



## 範例9：以astropy.modeling中的二維高斯曲線擬合 (待博識補充)



In [33]:

# Gaussian fit 的 function
def get_gaussfit(bin_img):
'''
Propose: to fit an 2D image with an 2D gaussian function
initial guess of parameters:
x_mean & y_mean at the center of the image
x_width & y_width = 2 pixels
amplitude = max(image)
best parameters were optimized by least-square method
Parameter
----------------------
bin_img: an 2D image

======================
Output
----------------------
object of fitting.LevMarLSQFitter()

'''
x_size=bin_img.shape[0]
y_size=bin_img.shape[1]
p_init = models.Gaussian2D(amplitude=np.max(bin_img),x_mean=0.5*x_size,y_mean=0.5*y_size,x_stddev=2,y_stddev=2)
y, x = np.mgrid[:bin_img.shape[1], :bin_img.shape[0]]
fit_p = fitting.LevMarLSQFitter()
p = fit_p(p_init, x,y,bin_img)
return p;

import numpy as np
import astropy.units as units
import matplotlib.pyplot as plt
from astropy.table import Table
from astroquery.vizier import Vizier
from astropy.coordinates import SkyCoord
from astropy.io import ascii
from astropy.modeling import models, fitting

#catalog_list = Vizier.find_catalogs('PPMXL')

#取消回傳的 row <= 50的限制
Vizier.ROW_LIMIT = -1

#建立格點
x=36 #全天
y=17 #全天
grid_x=np.arange(x)*10
grid_y=np.arange(y)*10-80

# 定義輸出的表格
result_table = Table(names=('RA', 'DE', 'mRA_offset','mDE_offset'), dtype=('f4', 'f4', 'f4', 'f4'))
result_table['RA'].unit=units.deg
result_table['DE'].unit=units.deg
result_table['mRA_offset'].unit=units.mas/units.year
result_table['mDE_offset'].unit=units.mas/units.year

#對每個格點在 Vizier上 query PPMXL, 搜尋半徑 10 arcminutes
for x in grid_x:
for y in grid_y:
result = Vizier.query_region(SkyCoord(ra=x*units.deg, dec=y*units.deg,frame="icrs"), radius=10.0*units.arcmin, catalog=('I/317'))
#name=str(x)+'_'+str(y)+'.csv'
#ascii.write(result[0], name, format='csv')
#plt.plot(result[0]['pmRA'],result[0]['pmDE'],'r.')
bin_img, yedges, xedges = np.histogram2d(result[0]['pmRA'], result[0]['pmDE'], (20,20),range=[[-100,100],[-100,100]])
extent = [xedges[0], xedges[-1], yedges[0], yedges[-1]]
#plt.imshow(bin_img, extent=extent, interpolation='nearest', cmap='gist_yarg', origin='lower')
fit_results=get_gaussfit(bin_img)
ra_off=(fit_results.x_mean-(bin_img.shape[0]*0.5))*10
de_off=(fit_results.y_mean-(bin_img.shape[1]*0.5))*10
#theta=1./np.cos(y)*




---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
<ipython-input-33-aa5e01ca0323> in <module>()
30 import matplotlib.pyplot as plt
31 from astropy.table import Table
---> 32 from astroquery.vizier import Vizier
33 from astropy.coordinates import SkyCoord
34 from astropy.io import ascii

ImportError: No module named 'astroquery'




In [ ]:

result_table




In [ ]:

%matplotlib inline
plt.quiver(result_table['RA'],result_table['DE'],result_table['mRA_offset'],result_table['mDE_offset'])