tutorial


Tutorials

From FASTQ files to interaction matrices

.. toctree:: :maxdepth: 1 tutorial/tutorial_1-Retrieve_published_HiC_datasets tutorial/tutorial_2-Preparation_of_the_reference_genome tutorial/tutorial_3-Hi-C_quality_check tutorial/tutorial_4-Mapping tutorial/tutorial_5-Parsing_mapped_reads tutorial/tutorial_6-Filtering_mapped_reads tutorial/tutorial_7-Bin_filtering_and_normalization

Identification and Analysis of TADs and Compartments

.. toctree:: :maxdepth: 2 tutorial/tutorial_8-Compartments_and_TADs_detection tutorial/tutorial_9-Compare_and_merge_Hi-C_experiments

Three-dimentional modelling

.. toctree:: :maxdepth: 2 tutorial/tutorial_10-Modeling_parameters_optimization tutorial/tutorial_11-3D_Models_production_and_analysis