From FASTQ files to interaction matrices
.. toctree::
:maxdepth: 1
tutorial/tutorial_1-Retrieve_published_HiC_datasets
tutorial/tutorial_2-Preparation_of_the_reference_genome
tutorial/tutorial_3-Hi-C_quality_check
tutorial/tutorial_4-Mapping
tutorial/tutorial_5-Parsing_mapped_reads
tutorial/tutorial_6-Filtering_mapped_reads
tutorial/tutorial_7-Bin_filtering_and_normalization
Identification and Analysis of TADs and Compartments
.. toctree::
:maxdepth: 2
tutorial/tutorial_8-Compartments_and_TADs_detection
tutorial/tutorial_9-Compare_and_merge_Hi-C_experiments
Three-dimentional modelling
.. toctree::
:maxdepth: 2
tutorial/tutorial_10-Modeling_parameters_optimization
tutorial/tutorial_11-3D_Models_production_and_analysis