Defferences between ancestral sequences with different parameters:
| GTR verbose0 | GTR verbose2 | JC69 verbose0 | JC69 verbose2 | |
|---|---|---|---|---|
| GTR verbose0 | 0 | [5006] | [4240, 5006] | [4240, 5006] |
| GTR verbose2 | [5006] | 0 | [4240] | [4240] |
| JC69 verbose0 | [4240, 5006] | [4240] | 0 | 0 |
| JC69 verbose2 | [4240, 5006] | [4240] | 0 | 0 |
| GTR verbose0 | GTR verbose2 | JC69 verbose0 | JC69 verbose2 | |
| reference | 1145 | 1146 | 1145 | 1145 |
TB substitution model
| T | C | A | G | |
|---|---|---|---|---|
| T | -1.431439 | 1.022812 | 0.111886 | 0.296741 |
| C | 0.534936 | -0.854108 | 0.171457 | 0.147715 |
| A | 0.111859 | 0.327753 | -1.306291 | 0.866679 |
| G | 0.155777 | 0.148266 | 0.455078 | -0.759121 |
mutation_spectrum
| T | C | A | G | |
|---|---|---|---|---|
| T | 0 | 0.7145 | 0.0782 | 0.2073 |
| C | 0.6263 | 0 | 0.2007 | 0.1730 |
| A | 0.0856 | 0.2509 | 0 | 0.6635 |
| G | 0.2052 | 0.1953 | 0.5995 | 0 |
smoothed mutation_spectrum
| T | C | A | G | |
|---|---|---|---|---|
| T | 0 | 0.6265 | 0.1371 | 0.2364 |
| C | 0.5587 | 0 | 0.2313 | 0.2100 |
| A | 0.1428 | 0.2699 | 0 | 0.5873 |
| G | 0.2348 | 0.2272 | 0.53815 | 0 |
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