notebook.community

Edit and run



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from chxanalys.chx_packages import *
%matplotlib notebook









    



/home/yuzhang/mc/envs/chx_debug/lib/python3.5/site-packages/filestore/retrieve.py:15: UserWarning: Do not import filestore.retrieve, import filestore.api instead
  warnings.warn("Do not import filestore.retrieve, "
/home/yuzhang/mc/envs/chx_debug/lib/python3.5/site-packages/chxtools-0.0.3+3.g5054eed-py3.5.egg/chxtools/handlers.py:66: UserWarning: stop using raw fs
/home/yuzhang/mc/envs/chx_debug/lib/python3.5/site-packages/chxtools-0.0.3+3.g5054eed-py3.5.egg/chxtools/handlers.py:67: UserWarning: stop using raw fs



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uid = '88d9ea' #] (scan num: 2642) (Measurement: V2_SiO250_Tw0.3 xpcs 1000 frames acq=1.34m s exp= 1.34 ms att=1 )
md = get_meta_data( uid )



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os.environ









    Out[4]:





environ({'SSH_CONNECTION': '10.0.137.77 47001 10.11.0.7 22', 'PATH': '/usr/local/bin:/usr/bin:/bin:/usr/games', 'CLICOLOR': '1', 'MPLBACKEND': 'module://ipykernel.pylab.backend_inline', 'LANG': 'en_US.UTF-8', 'MAIL': '/var/mail/yuzhang', 'LOGNAME': 'yuzhang', 'GIT_PAGER': 'cat', 'SSH_CLIENT': '10.0.137.77 47001 22', 'USER': 'yuzhang', 'HDF5_PLUGIN_PATH': '/home/xf11id/lz4_workaround/HDF5Plugin', 'PAGER': 'cat', 'SHELL': '/bin/bash', 'PWD': '/home/yuzhang', '_': '/home/yuzhang/mc/envs/chx_debug/bin/python', 'SHLVL': '1', 'HOME': '/home/yuzhang', 'TERM': 'xterm-color'})



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#md



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imgs = load_data( uid, md['detector'], reverse= True  )
print(imgs)









    



EigerImages2 processed through proc_func. Original repr:
    <Frames>
    Length: 1000 frames
    Frame Shape: 2167 x 2070
    Pixel Datatype: uint16



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os.environ['HDF5_PLUGIN_PATH'] = '/home/xf11id/lz4_workaround/HDF5Plugin'



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'HDF5_PLUGIN_PATH': '/home/xf11id/lz4_workaround/HDF5Plugin'



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os.environ['HDF5_PLUGIN_PATH'] = ''



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os.environ



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os.environ['HDF5_PLUGIN_PATH']









    Out[6]:





'/home/xf11id/lz4_workaround/HDF5Plugin'



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%env



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