In [1]:

    

%run ../../shared_setup.ipynb


    

    




docker image cggh/biipy:v1.6.0






    

In [2]:

    

(tbl_regions_1b
 .rename({'region_chrom': 'Chromosome', 
          'region_start': 'Start', 
          'region_stop': 'Stop', 
          'region_type': 'Type', 
          'region_size': 'Size'})
 .displayall(index_header=False))


    

    








Chromosome
Start
Stop
Type
Size




Pf3D7_01_v3
1
27336
SubtelomericRepeat
27336


Pf3D7_01_v3
27337
92900
SubtelomericHypervariable
65564


Pf3D7_01_v3
92901
457931
Core
365031


Pf3D7_01_v3
457932
460311
Centromere
2380


Pf3D7_01_v3
460312
575900
Core
115589


Pf3D7_01_v3
575901
616691
SubtelomericHypervariable
40791


Pf3D7_01_v3
616692
640851
SubtelomericRepeat
24160


Pf3D7_02_v3
1
23100
SubtelomericRepeat
23100


Pf3D7_02_v3
23101
105800
SubtelomericHypervariable
82700


Pf3D7_02_v3
105801
447300
Core
341500


Pf3D7_02_v3
447301
450450
Centromere
3150


Pf3D7_02_v3
450451
862500
Core
412050


Pf3D7_02_v3
862501
925850
SubtelomericHypervariable
63350


Pf3D7_02_v3
925851
947102
SubtelomericRepeat
21252


Pf3D7_03_v3
1
34268
SubtelomericRepeat
34268


Pf3D7_03_v3
34269
70630
SubtelomericHypervariable
36362


Pf3D7_03_v3
70631
597816
Core
527186


Pf3D7_03_v3
597817
600275
Centromere
2459


Pf3D7_03_v3
600276
1003060
Core
402785


Pf3D7_03_v3
1003061
1040961
SubtelomericHypervariable
37901


Pf3D7_03_v3
1040962
1067971
SubtelomericRepeat
27010


Pf3D7_04_v3
1
26511
SubtelomericRepeat
26511


Pf3D7_04_v3
26512
91420
SubtelomericHypervariable
64909


Pf3D7_04_v3
91421
545800
Core
454380


Pf3D7_04_v3
545801
614900
InternalHypervariable
69100


Pf3D7_04_v3
614901
642003
Core
27103


Pf3D7_04_v3
642004
644529
Centromere
2526


Pf3D7_04_v3
644530
935030
Core
290501


Pf3D7_04_v3
935031
983080
InternalHypervariable
48050


Pf3D7_04_v3
983081
1143990
Core
160910


Pf3D7_04_v3
1143991
1182297
SubtelomericHypervariable
38307


Pf3D7_04_v3
1182298
1200490
SubtelomericRepeat
18193


Pf3D7_05_v3
1
18750
SubtelomericRepeat
18750


Pf3D7_05_v3
18751
37900
SubtelomericHypervariable
19150


Pf3D7_05_v3
37901
455740
Core
417840


Pf3D7_05_v3
455741
457252
Centromere
1512


Pf3D7_05_v3
457253
1321390
Core
864138


Pf3D7_05_v3
1321391
1342974
SubtelomericHypervariable
21584


Pf3D7_05_v3
1342975
1343577
SubtelomericRepeat
603


Pf3D7_06_v3
1
610
SubtelomericRepeat
610


Pf3D7_06_v3
611
72350
SubtelomericHypervariable
71740


Pf3D7_06_v3
72351
478652
Core
406302


Pf3D7_06_v3
478653
480971
Centromere
2319


Pf3D7_06_v3
480972
723117
Core
242146


Pf3D7_06_v3
723118
742800
InternalHypervariable
19683


Pf3D7_06_v3
742801
1294830
Core
552030


Pf3D7_06_v3
1294831
1384651
SubtelomericHypervariable
89821


Pf3D7_06_v3
1384652
1418242
SubtelomericRepeat
33591


Pf3D7_07_v3
1
18000
SubtelomericRepeat
18000


Pf3D7_07_v3
18001
77100
SubtelomericHypervariable
59100


Pf3D7_07_v3
77101
508360
Core
431260


Pf3D7_07_v3
508361
605650
InternalHypervariable
97290


Pf3D7_07_v3
605651
809245
Core
203595


Pf3D7_07_v3
809246
811716
Centromere
2471


Pf3D7_07_v3
811717
1381600
Core
569884


Pf3D7_07_v3
1381601
1428410
SubtelomericHypervariable
46810


Pf3D7_07_v3
1428411
1445207
SubtelomericRepeat
16797


Pf3D7_08_v3
1
19100
SubtelomericRepeat
19100


Pf3D7_08_v3
19101
73560
SubtelomericHypervariable
54460


Pf3D7_08_v3
73561
299079
Core
225519


Pf3D7_08_v3
299080
301403
Centromere
2324


Pf3D7_08_v3
301404
427430
Core
126027


Pf3D7_08_v3
427431
467340
InternalHypervariable
39910


Pf3D7_08_v3
467341
1365730
Core
898390


Pf3D7_08_v3
1365731
1445690
SubtelomericHypervariable
79960


Pf3D7_08_v3
1445691
1472805
SubtelomericRepeat
27115


Pf3D7_09_v3
1
17955
SubtelomericRepeat
17955


Pf3D7_09_v3
17956
79100
SubtelomericHypervariable
61145


Pf3D7_09_v3
79101
1242137
Core
1163037


Pf3D7_09_v3
1242138
1244483
Centromere
2346


Pf3D7_09_v3
1244484
1473560
Core
229077


Pf3D7_09_v3
1473561
1505792
SubtelomericHypervariable
32232


Pf3D7_09_v3
1505793
1541735
SubtelomericRepeat
35943


Pf3D7_10_v3
1
26240
SubtelomericRepeat
26240


Pf3D7_10_v3
26241
68970
SubtelomericHypervariable
42730


Pf3D7_10_v3
68971
1571815
Core
1502845


Pf3D7_10_v3
1571816
1652190
SubtelomericHypervariable
80375


Pf3D7_10_v3
1652191
1687656
SubtelomericRepeat
35466


Pf3D7_11_v3
1
21990
SubtelomericRepeat
21990


Pf3D7_11_v3
21991
110000
SubtelomericHypervariable
88010


Pf3D7_11_v3
110001
831968
Core
721968


Pf3D7_11_v3
831969
834245
Centromere
2277


Pf3D7_11_v3
834246
2003320
Core
1169075


Pf3D7_11_v3
2003321
2037033
SubtelomericHypervariable
33713


Pf3D7_11_v3
2037034
2038340
SubtelomericRepeat
1307


Pf3D7_12_v3
1
14780
SubtelomericRepeat
14780


Pf3D7_12_v3
14781
60300
SubtelomericHypervariable
45520


Pf3D7_12_v3
60301
766654
Core
706354


Pf3D7_12_v3
766655
780450
InternalHypervariable
13796


Pf3D7_12_v3
780451
1282773
Core
502323


Pf3D7_12_v3
1282774
1285067
Centromere
2294


Pf3D7_12_v3
1285068
1688600
Core
403533


Pf3D7_12_v3
1688601
1745530
InternalHypervariable
56930


Pf3D7_12_v3
1745531
2163700
Core
418170


Pf3D7_12_v3
2163701
2251150
SubtelomericHypervariable
87450


Pf3D7_12_v3
2251151
2271494
SubtelomericRepeat
20344


Pf3D7_13_v3
1
19160
SubtelomericRepeat
19160


Pf3D7_13_v3
19161
74413
SubtelomericHypervariable
55253


Pf3D7_13_v3
74414
1168127
Core
1093714


Pf3D7_13_v3
1168128
1170425
Centromere
2298


Pf3D7_13_v3
1170426
2791900
Core
1621475


Pf3D7_13_v3
2791901
2894620
SubtelomericHypervariable
102720


Pf3D7_13_v3
2894621
2925236
SubtelomericRepeat
30616


Pf3D7_14_v3
1
1344
SubtelomericRepeat
1344


Pf3D7_14_v3
1345
35774
SubtelomericHypervariable
34430


Pf3D7_14_v3
35775
1071523
Core
1035749


Pf3D7_14_v3
1071524
1075089
Centromere
3566


Pf3D7_14_v3
1075090
3255710
Core
2180621


Pf3D7_14_v3
3255711
3291511
SubtelomericHypervariable
35801


Pf3D7_14_v3
3291512
3291936
SubtelomericRepeat
425

In [ ]: