notebook.community

Edit and run



In [1]:

    
import sys
sys.path.append('../src')
from popgen import *
%matplotlib inline



In [2]:

    
m = SteppingStone(gens=150)
m.mig = 0.01
m.pop_size = 100
m.num_pops_x = 8
m.num_msats = 50
m.sample_size = 200
AnimatedIndividualView(m, PCA(), step=10)
m.run()



In [3]:

    
m = SteppingStone(gens=500, two_d=True)
m.mig = 0.01
m.pop_size = 100
m.num_pops_x = 5
m.num_pops_y = 3
m.num_msats = 50
m.sample_size = 200
AnimatedIndividualView(m, PCA(), step=20)
m.run()



In [3]: