In [40]:
from om import base, settings
from om.components import *
from om.data import *
from om.util import *
import pandas as pd
import numpy as np
import math,cobra
session = base.Session()
#model = cobra.io.load_matlab_model('/Volumes/extra/Dropbox/om_data/models/iJO1366.mat')
ged = GeneExpressionData
cpg = ChIPPeakGene
dged = DifferentialGeneExpressionData
cpge = ChIPPeakGeneExpression
In [48]:
a = ome.query(DifferentialExpression).filter(DifferentialExpression.name.ilike('affy%')).first()
In [51]:
ome.delete(a)
ome.commit()
---------------------------------------------------------------------------
IntegrityError Traceback (most recent call last)
<ipython-input-51-bfe1c749b6c9> in <module>()
1 ome.delete(a)
----> 2 ome.commit()
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/session.pyc in commit(self)
718 raise sa_exc.InvalidRequestError("No transaction is begun.")
719
--> 720 self.transaction.commit()
721
722 def prepare(self):
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/session.pyc in commit(self)
351 self._assert_active(prepared_ok=True)
352 if self._state is not PREPARED:
--> 353 self._prepare_impl()
354
355 if self._parent is None or self.nested:
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/session.pyc in _prepare_impl(self)
331 if self.session._is_clean():
332 break
--> 333 self.session.flush()
334 else:
335 raise exc.FlushError(
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/session.pyc in flush(self, objects)
1815 try:
1816 self._flushing = True
-> 1817 self._flush(objects)
1818 finally:
1819 self._flushing = False
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/session.pyc in _flush(self, objects)
1933 except:
1934 with util.safe_reraise():
-> 1935 transaction.rollback(_capture_exception=True)
1936
1937 def is_modified(self, instance, include_collections=True,
/usr/local/lib/python2.7/site-packages/sqlalchemy/util/langhelpers.pyc in __exit__(self, type_, value, traceback)
56 exc_type, exc_value, exc_tb = self._exc_info
57 self._exc_info = None # remove potential circular references
---> 58 compat.reraise(exc_type, exc_value, exc_tb)
59 else:
60 self._exc_info = None # remove potential circular references
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/session.pyc in _flush(self, objects)
1897 self._warn_on_events = True
1898 try:
-> 1899 flush_context.execute()
1900 finally:
1901 self._warn_on_events = False
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/unitofwork.pyc in execute(self)
370 self.dependencies,
371 postsort_actions):
--> 372 rec.execute(self)
373
374 def finalize_flush_changes(self):
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/unitofwork.pyc in execute(self, uow)
551 persistence.delete_obj(self.mapper,
552 uow.states_for_mapper_hierarchy(self.mapper, True, False),
--> 553 uow
554 )
555
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/persistence.pyc in delete_obj(base_mapper, states, uowtransaction)
113
114 _emit_delete_statements(base_mapper, uowtransaction,
--> 115 cached_connections, mapper, table, delete)
116
117 for state, state_dict, mapper, has_identity, connection \
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/persistence.pyc in _emit_delete_statements(base_mapper, uowtransaction, cached_connections, mapper, table, delete)
675 connection.execute(statement, del_objects)
676 else:
--> 677 connection.execute(statement, del_objects)
678
679
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/base.pyc in execute(self, object, *multiparams, **params)
660 object,
661 multiparams,
--> 662 params)
663 else:
664 raise exc.InvalidRequestError(
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/base.pyc in _execute_clauseelement(self, elem, multiparams, params)
759 compiled_sql,
760 distilled_params,
--> 761 compiled_sql, distilled_params
762 )
763 if self._has_events:
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/base.pyc in _execute_context(self, dialect, constructor, statement, parameters, *args)
872 parameters,
873 cursor,
--> 874 context)
875
876 if self._has_events:
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/base.pyc in _handle_dbapi_exception(self, e, statement, parameters, cursor, context)
1022 self.dialect.dbapi.Error,
1023 connection_invalidated=self._is_disconnect),
-> 1024 exc_info
1025 )
1026
/usr/local/lib/python2.7/site-packages/sqlalchemy/util/compat.pyc in raise_from_cause(exception, exc_info)
161 # the code line where the issue occurred
162 exc_type, exc_value, exc_tb = exc_info
--> 163 reraise(type(exception), exception, tb=exc_tb)
164
165
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/base.pyc in _execute_context(self, dialect, constructor, statement, parameters, *args)
865 statement,
866 parameters,
--> 867 context)
868 except Exception, e:
869 self._handle_dbapi_exception(
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/default.pyc in do_execute(self, cursor, statement, parameters, context)
322
323 def do_execute(self, cursor, statement, parameters, context=None):
--> 324 cursor.execute(statement, parameters)
325
326 def do_execute_no_params(self, cursor, statement, context=None):
IntegrityError: (IntegrityError) update or delete on table "genome_data" violates foreign key constraint "diff_exp_data_data_set_id_fkey" on table "diff_exp_data"
DETAIL: Key (data_set_id, genome_region_id)=(408, 39930) is still referenced from table "diff_exp_data".
'DELETE FROM data_set WHERE data_set.id = %(id)s' {'id': 408}
In [21]:
pd.DataFrame(session.query(diff_exp_chip_peak).all())
Out[21]:
0
1
2
3
4
5
6
7
8
9
10
0
382
362
Crp
anti-crp
delta-crp
wt
1
fructose
NH4Cl
O2
1
382
337
Crp
anti-myc
delta-crp
wt
1
fructose
NH4Cl
O2
2
382
329
Crp
anti-crp
delta-crp
wt
1
fructose
NH4Cl
O2
3
382
362
Crp
anti-crp
wt
delta-crp
1
fructose
NH4Cl
O2
4
382
337
Crp
anti-myc
wt
delta-crp
1
fructose
NH4Cl
O2
5
382
329
Crp
anti-crp
wt
delta-crp
1
fructose
NH4Cl
O2
6
384
350
Fur
anti-myc
delta-fur
wt
7
glucose
NH4Cl
O2
FeCl2
7
384
350
Fur
anti-myc
wt
delta-fur
7
glucose
NH4Cl
O2
FeCl2
8
396
365
Crp
anti-crp
delta-crp
wt
3
glycerol
NH4Cl
O2
9
396
348
Crp
anti-crp
delta-crp
wt
3
glycerol
NH4Cl
O2
10
396
341
Crp
anti-crp
delta-crp
wt
3
glycerol
NH4Cl
O2
11
396
331
Crp
anti-crp
delta-crp
wt
3
glycerol
NH4Cl
O2
12
396
373
Crp
anti-crp
delta-crp
wt
3
glycerol
NH4Cl
O2
13
396
340
Crp
anti-crp
delta-crp
wt
3
glycerol
NH4Cl
O2
14
396
347
Crp
anti-crp
delta-crp
wt
3
glycerol
NH4Cl
O2
15
396
376
Crp
anti-myc
delta-crp
wt
3
glycerol
NH4Cl
O2
16
396
365
Crp
anti-crp
wt
delta-crp
3
glycerol
NH4Cl
O2
17
396
348
Crp
anti-crp
wt
delta-crp
3
glycerol
NH4Cl
O2
18
396
341
Crp
anti-crp
wt
delta-crp
3
glycerol
NH4Cl
O2
19
396
331
Crp
anti-crp
wt
delta-crp
3
glycerol
NH4Cl
O2
20
396
373
Crp
anti-crp
wt
delta-crp
3
glycerol
NH4Cl
O2
21
396
340
Crp
anti-crp
wt
delta-crp
3
glycerol
NH4Cl
O2
22
396
347
Crp
anti-crp
wt
delta-crp
3
glycerol
NH4Cl
O2
23
396
376
Crp
anti-myc
wt
delta-crp
3
glycerol
NH4Cl
O2
24
398
371
Crp
anti-myc
delta-crp
wt
2
glucose
NH4Cl
O2
25
398
326
Crp
anti-crp
delta-crp
wt
2
glucose
NH4Cl
O2
26
398
371
Crp
anti-myc
wt
delta-crp
2
glucose
NH4Cl
O2
27
398
326
Crp
anti-crp
wt
delta-crp
2
glucose
NH4Cl
O2
28
400
359
Fur
anti-myc
delta-fur
wt
6
glucose
NH4Cl
O2
dpd
29
400
359
Fur
anti-myc
wt
delta-fur
6
glucose
NH4Cl
O2
dpd
30
409
333
Cra
anti-myc
delta-cra
wt
2
glucose
NH4Cl
O2
31
409
333
Cra
anti-myc
wt
delta-cra
2
glucose
NH4Cl
O2
32
419
353
Fnr
anti-myc
delta-fnr
wt
4
glucose
NH4Cl
anaerobic
33
419
351
Fnr
anti-myc
delta-fnr
wt
4
glucose
NH4Cl
anaerobic
34
419
353
Fnr
anti-myc
wt
delta-fnr
4
glucose
NH4Cl
anaerobic
35
419
351
Fnr
anti-myc
wt
delta-fnr
4
glucose
NH4Cl
anaerobic
36
422
370
Cra
anti-myc
delta-cra
wt
4
glucose
NH4Cl
anaerobic
37
422
370
Cra
anti-myc
wt
delta-cra
4
glucose
NH4Cl
anaerobic
38
425
334
Lrp
anti-myc
delta-lrp
wt
2
glucose
NH4Cl
O2
39
425
334
Lrp
anti-myc
wt
delta-lrp
2
glucose
NH4Cl
O2
40
428
362
Crp
anti-crp
delta-crp
wt
1
fructose
NH4Cl
O2
41
428
337
Crp
anti-myc
delta-crp
wt
1
fructose
NH4Cl
O2
42
428
329
Crp
anti-crp
delta-crp
wt
1
fructose
NH4Cl
O2
43
428
362
Crp
anti-crp
wt
delta-crp
1
fructose
NH4Cl
O2
44
428
337
Crp
anti-myc
wt
delta-crp
1
fructose
NH4Cl
O2
45
428
329
Crp
anti-crp
wt
delta-crp
1
fructose
NH4Cl
O2
46
439
371
Crp
anti-myc
delta-crp
wt
2
glucose
NH4Cl
O2
47
439
326
Crp
anti-crp
delta-crp
wt
2
glucose
NH4Cl
O2
48
439
371
Crp
anti-myc
wt
delta-crp
2
glucose
NH4Cl
O2
49
439
326
Crp
anti-crp
wt
delta-crp
2
glucose
NH4Cl
O2
50
445
368
Cra
anti-myc
delta-cra
wt
13
acetate
NH4Cl
O2
51
445
368
Cra
anti-myc
wt
delta-cra
13
acetate
NH4Cl
O2
52
453
352
Fnr
anti-myc
delta-fnr
wt
12
glucose
NH4Cl
NO3
53
453
352
Fnr
anti-myc
wt
delta-fnr
12
glucose
NH4Cl
NO3
In [27]:
session.query(DifferentialExpression).all()
Out[27]:
[Differential Expression (#377): RNAseq_bw25113_acetate/fumarate_NH4Cl_O2_thiamine,
Differential Expression (#378): RNAseq_wt_glucose_NH4Cl/cytidine_O2,
Differential Expression (#379): RNAseq_wt_glucose_cytidine/glutamine_O2,
Differential Expression (#380): RNAseq_wt_glucose_cytosine/glutamine_O2,
Differential Expression (#381): RNAseq_wt_glucose_NH4Cl/glutamine_O2,
Differential Expression (#382): RNAseq_delta-crp/wt_fructose_NH4Cl_O2,
Differential Expression (#383): RNAseq_wt_glucose_NH4Cl_O2_supp/FeCl2,
Differential Expression (#384): RNAseq_delta-fur/wt_glucose_NH4Cl_O2_FeCl2,
Differential Expression (#385): RNAseq_delta-fur_glucose_NH4Cl_O2_FeCl2/dpd,
Differential Expression (#386): RNAseq_wt_glucose_cytidine/cytosine_O2,
Differential Expression (#387): RNAseq_wt_glucose_NH4Cl/cytosine_O2,
Differential Expression (#388): RNAseq_bw25113_fumarate/glucose_NH4Cl_O2_thiamine,
Differential Expression (#389): RNAseq_bw25113_acetate/glucose_NH4Cl_O2_thiamine,
Differential Expression (#390): RNAseq_delAr2/wt_glycerol_NH4Cl_O2,
Differential Expression (#391): RNAseq_wt_fructose/glycerol_NH4Cl_O2,
Differential Expression (#392): RNAseq_delAr1/wt_glycerol_NH4Cl_O2,
Differential Expression (#393): RNAseq_delAr1delAr2/wt_glycerol_NH4Cl_O2,
Differential Expression (#394): RNAseq_Ar3/wt_glycerol_NH4Cl_O2,
Differential Expression (#395): RNAseq_wt_glucose/glycerol_NH4Cl_O2,
Differential Expression (#396): RNAseq_delta-crp/wt_glycerol_NH4Cl_O2,
Differential Expression (#397): RNAseq_wt_fructose/glucose_NH4Cl_O2,
Differential Expression (#398): RNAseq_delta-crp/wt_glucose_NH4Cl_O2,
Differential Expression (#399): RNAseq_wt_glucose_NH4Cl_O2_FeCl2/dpd,
Differential Expression (#400): RNAseq_delta-fur/wt_glucose_NH4Cl_O2_dpd,
Differential Expression (#401): RNAseq_wt_glucose_NH4Cl_O2_supp/dpd,
Differential Expression (#402): RNAseq_delta-crp_fructose/glycerol_NH4Cl_O2,
Differential Expression (#403): RNAseq_delta-crp_glucose/glycerol_NH4Cl_O2,
Differential Expression (#404): RNAseq_bw25113_fumarate/pyruvate_NH4Cl_O2_thiamine,
Differential Expression (#405): RNAseq_bw25113_glucose/pyruvate_NH4Cl_O2_thiamine,
Differential Expression (#406): RNAseq_bw25113_acetate/pyruvate_NH4Cl_O2_thiamine,
Differential Expression (#407): RNAseq_delta-crp_fructose/glucose_NH4Cl_O2,
Differential Expression (#408): affyexp_delta-cra_acetate/glucose_NH4Cl_O2,
Differential Expression (#409): affyexp_delta-cra/wt_glucose_NH4Cl_O2,
Differential Expression (#410): affyexp_delta-narL/wt_glucose_NH4Cl_anaerobic,
Differential Expression (#411): affyexp_delta-narL_glucose_NH4Cl_NO3/anaerobic,
Differential Expression (#412): affyexp_delta-arcA_glucose_NH4Cl_NO3/O2,
Differential Expression (#413): affyexp_delta-lrp/wt_glucose_leucine_O2,
Differential Expression (#414): affyexp_wt_glucose_adenine/leucine_O2,
Differential Expression (#415): affyexp_wt_glucose_NH4Cl/leucine_O2,
Differential Expression (#416): affyexp_delta-arcA_glucose_NH4Cl_O2/anaerobic,
Differential Expression (#417): affyexp_delta-arcA/wt_glucose_NH4Cl_anaerobic,
Differential Expression (#418): affyexp_delta-arcA_glucose_NH4Cl_NO3/anaerobic,
Differential Expression (#421): affyexp_delta-fnr_glucose_NH4Cl_NO3/anaerobic,
Differential Expression (#422): affyexp_delta-cra/wt_glucose_NH4Cl_anaerobic,
Differential Expression (#419): affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Differential Expression (#420): affyexp_delta-fnr_glucose_NH4Cl_O2/anaerobic,
Differential Expression (#423): affyexp_delta-cra_glucose_NH4Cl_O2/anaerobic,
Differential Expression (#424): affyexp_delta-lrp_glucose_NH4Cl/leucine_O2,
Differential Expression (#425): affyexp_delta-lrp/wt_glucose_NH4Cl_O2,
Differential Expression (#426): affyexp_wt_fructose/glucose_NH4Cl_O2,
Differential Expression (#427): affyexp_wt_acetate/fructose_NH4Cl_O2,
Differential Expression (#428): affyexp_delta-crp/wt_fructose_NH4Cl_O2,
Differential Expression (#429): affyexp_delta-arcA/wt_glucose_NH4Cl_O2,
Differential Expression (#430): affyexp_delta-purR/wt_glucose_NH4Cl_O2,
Differential Expression (#431): affyexp_delta-purR_glucose_NH4Cl/adenine_O2,
Differential Expression (#432): affyexp_wt_glucose_NH4Cl_O2/anaerobic,
Differential Expression (#433): affyexp_delta-arcAfnr/wt_glucose_NH4Cl_anaerobic,
Differential Expression (#434): affyexp_delta-narP/wt_glucose_NH4Cl_anaerobic,
Differential Expression (#435): affyexp_delta-narLnarP/wt_glucose_NH4Cl_anaerobic,
Differential Expression (#436): affyexp_wt_glucose_NH4Cl_NO3/anaerobic,
Differential Expression (#437): affyexp_wt_acetate/glucose_NH4Cl_O2,
Differential Expression (#438): affyexp_wt_glucose_NH4Cl/adenine_O2,
Differential Expression (#439): affyexp_delta-crp/wt_glucose_NH4Cl_O2,
Differential Expression (#440): affyexp_wt_glucose_NH4Cl_NO3/O2,
Differential Expression (#441): affyexp_delta-arcAfnr/wt_glucose_NH4Cl_O2,
Differential Expression (#442): affyexp_delta-fnr/wt_glucose_NH4Cl_O2,
Differential Expression (#443): affyexp_delta-narP_glucose_NH4Cl_NO3/anaerobic,
Differential Expression (#444): affyexp_delta-narP/wt_glucose_NH4Cl_NO3,
Differential Expression (#445): affyexp_delta-cra/wt_acetate_NH4Cl_O2,
Differential Expression (#446): affyexp_delta-purR/wt_glucose_adenine_O2,
Differential Expression (#447): affyexp_delta-arcAfnr_glucose_NH4Cl_O2/anaerobic,
Differential Expression (#448): affyexp_delta-crp_fructose/glucose_NH4Cl_O2,
Differential Expression (#449): affyexp_delta-narLnarP_glucose_NH4Cl_NO3/anaerobic,
Differential Expression (#450): affyexp_delta-narLnarP/wt_glucose_NH4Cl_NO3,
Differential Expression (#451): affyexp_delta-arcA/wt_glucose_NH4Cl_NO3,
Differential Expression (#452): affyexp_delta-narL/wt_glucose_NH4Cl_NO3,
Differential Expression (#453): affyexp_delta-fnr/wt_glucose_NH4Cl_NO3,
Differential Expression (#454): affyexp_delta-fnr_glucose_NH4Cl_NO3/O2]
In [28]:
session.query(DiffExpData).filter(DiffExpData.data_set_id == 419).all()
Out[28]:
[Diff Exp Data: Gene: (b1795, yeaQ) 1877030-1877279 (-) -0.40 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2505, yfgH) 2627813-2628332 (+) -0.47 0.25 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2216, rcsD) 2311509-2314182 (+) -0.19 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1007, rutF) 1069082-1069577 (-) 0.39 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2597, raiA) 2735175-2735517 (+) -0.35 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0405, queA) 424234-425305 (+) -0.10 0.75 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4085, alsE) 4305805-4306501 (-) -0.26 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0140, yadV) 155460-156201 (-) -0.24 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0048, folA) 49822-50302 (+) 0.61 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0981, etk) 1041252-1043433 (-) 0.44 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2037, wzxB) 2106360-2107608 (-) -0.04 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0692, potE) 716168-717488 (-) -0.12 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3042, yqiC) 3182861-3183152 (+) -0.29 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2751, cysN) 2872013-2873441 (-) -0.74 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1198, dhaM) 1246918-1248337 (-) -0.49 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2325, yfcL) 2441912-2442191 (-) -0.04 0.83 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0214, rnhA) 235534-236002 (-) 0.13 0.73 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0195, tsaA) 218886-219594 (-) -0.28 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3669, uhpA) 3848158-3848749 (-) -0.02 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4364, yjjP) 4600110-4600881 (-) -0.03 0.90 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2641, yfjV) 2770188-2771204 (-) 0.01 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3408, feoA) 3538184-3538412 (+) 0.03 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1738, chbB) 1819322-1819643 (-) 0.03 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2247, rhmD) 2358230-2359436 (-) 0.13 0.68 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0579, ybdF) 604740-605109 (-) 1.48 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3866, yihI) 4049369-4049879 (+) 1.89 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2176, rtn) 2268747-2270304 (+) 0.59 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3560, glyQ) 3722429-3723341 (-) 0.71 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3105, yhaJ) 3251339-3252236 (-) -0.02 0.75 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2684, mprA) 2808791-2809322 (+) -0.38 0.41 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2287, nuoB) 2401972-2402635 (-) -0.44 0.19 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2896, cptA) 3038437-3038845 (-) 0.26 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4186, yjfC) 4411050-4412214 (+) 0.45 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1636, pdxY) 1713049-1713913 (-) -0.35 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2264, menD) 2375610-2377281 (-) -0.32 0.63 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2746, ispF) 2869322-2869802 (-) -0.23 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1868, yecE) 1949418-1950237 (+) 0.13 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1655, ydhO) 1732458-1733274 (+) -0.44 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3693, dgoK) 3871618-3872497 (-) -0.14 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1257, yciE) 1312741-1313248 (-) -0.21 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0859, rlmC) 897740-898868 (+) -0.03 0.63 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3238, yhcN) 3383559-3383823 (+) 2.61 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3627, waaR) 3800061-3801081 (-) 0.52 0.26 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0892, rarA) 937216-938560 (+) 0.94 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1225, narH) 1282826-1284365 (+) -0.03 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4018, iclR) 4220826-4221651 (-) -1.66 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3902, rhaD) 4091470-4092295 (-) 0.13 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2346, mlaA) 2462273-2463029 (-) 0.02 0.96 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3727, pstC) 3907461-3908421 (-) -0.06 0.69 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2449, yffR) 2562001-2562394 (+) 0.13 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2578, eamB) 2713444-2714032 (+) -0.15 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2737, ygbK) 2860356-2861523 (+) 0.46 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0482, ybaP) 506509-507304 (-) -0.64 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3270, yhdY) 3419346-3420450 (+) -0.21 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3648, gmk) 3819450-3820074 (+) -0.68 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2240, glpT) 2349037-2350396 (-) -0.49 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1334, fnr) 1396797-1397550 (-) -0.22 0.62 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2868, xdhC) 3001510-3001990 (+) 0.24 0.58 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1907, tyrP) 1987704-1988916 (+) 1.66 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1063, yceB) 1121935-1122496 (-) -0.09 0.77 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3472, dcrB) 3607977-3608535 (+) -0.02 0.94 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3031, yqiA) 3173446-3174028 (-) -0.51 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1285, gmr) 1342780-1344766 (-) 0.73 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0685, ybfE) 710827-711121 (-) 0.27 0.40 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1388, paaA) 1451950-1452880 (+) 0.30 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4242, mgtA) 4465647-4468344 (+) 0.16 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3558, insK) 3719220-3720072 (+) -0.45 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2261, menC) 2373021-2373984 (-) -0.47 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0957, ompA) 1018235-1019276 (-) -0.81 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4330, yjiH) 4558019-4558703 (-) -0.48 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2097, fbaB) 2175533-2176586 (-) -0.63 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0928, aspC) 983741-984932 (-) -0.66 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3976, thrU) 4173410-4173486 (+) 0.27 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3279, yrdA) 3427257-3427812 (+) -0.05 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1159, mcrA) 1209568-1210402 (+) 0.79 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0458, ylaC) 478004-478475 (-) -1.63 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3667, uhpC) 3845327-3846647 (-) -0.31 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3589, yiaY) 3754698-3755850 (-) -0.36 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1325, ycjG) 1386953-1387919 (+) -0.66 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1518, lsrG) 1605022-1605313 (+) -0.32 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2530, iscS) 2658338-2659553 (-) -0.16 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3072, aer) 3215577-3217098 (-) -0.33 0.56 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0237, pepD) 254258-255716 (-) -4.15 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0803, ybiI) 837412-837679 (-) 0.32 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0862, artQ) 900756-901473 (-) 0.02 0.96 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2008, yeeA) 2077556-2078615 (-) 1.14 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0919, ycbJ) 970974-971868 (+) 1.31 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1121, ycfZ) 1179701-1180490 (-) 0.38 0.25 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1491, yddW) 1565527-1566847 (-) 0.72 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0980, appA) 1039839-1041138 (+) 0.28 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2705, srlD) 2825758-2826538 (+) 1.05 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2806, rlmM) 2938164-2939265 (-) -0.58 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0402, proY) 420209-421583 (+) -0.07 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1831, proQ) 1912859-1913558 (-) -0.54 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1686, ydiI) 1763245-1763656 (-) -0.69 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3801, aslA) 3982374-3984030 (-) -0.43 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2201, ccmA) 2295042-2295666 (-) -2.09 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0964, yccT) 1026333-1026996 (-) -0.31 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1520, yneE) 1606131-1607046 (-) -0.25 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2957, ansB) 3097703-3098750 (-) -0.12 0.76 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3869, glnL) 4053312-4054362 (-) -0.22 0.48 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0768, ybhD) 798844-799798 (-) -0.25 0.25 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0677, nagA) 700825-701974 (-) 0.05 0.88 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1389, paaB) 1452891-1453179 (+) -0.17 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3904, rhaB) 4094001-4095471 (-) -0.42 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1675, ydhZ) 1752955-1753165 (-) -0.06 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4174, hflK) 4400060-4401320 (+) -0.26 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3404, envZ) 3532537-3533890 (-) -0.02 0.94 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0042, fixB) 43187-44129 (+) -0.28 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0312, betB) 326484-327957 (-) 0.03 0.89 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1402, insD1) 1465944-1466850 (-) -0.06 0.91 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2241, glpA) 2350668-2352297 (+) -0.55 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0619, dpiB) 651457-653116 (+) 0.03 0.89 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1949, fliQ) 2020639-2020909 (+) -0.16 0.52 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2026, hisI) 2094637-2095249 (+) 0.64 0.32 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2565, recO) 2699762-2700491 (-) -1.10 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2935, tktA) 3077665-3079657 (-) 1.45 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2050, wcaI) 2122546-2123770 (-) 1.87 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3713, chrR) 3892674-3893241 (+) 1.53 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0212, gloB) 234026-234782 (-) 0.34 0.61 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0159, mtn) 178454-179153 (-) 0.30 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3123, rnpB) 3268237-3268614 (-) 0.01 0.96 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3660, yicL) 3836270-3837194 (+) 0.05 0.75 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3719, yieL) 3897430-3898600 (-) -0.29 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1044, ymdA) 1104636-1104948 (+) 1.36 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1571, ydfA) 1646531-1646687 (+) -0.57 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0351, mhpF) 372144-373095 (+) -0.71 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1014, putA) 1074142-1078105 (-) -0.10 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3810, yigA) 3993605-3994313 (+) -0.61 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0650, hscC) 680945-682616 (-) 0.46 0.35 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1205, ychH) 1258013-1258292 (+) 0.56 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1867, yecD) 1948855-1949422 (+) 2.31 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3955, eptC) 4146554-4148288 (-) 0.56 0.40 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2854, pbl) 2991960-2992463 (+) -0.73 0.53 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1244, oppB) 1300922-1301843 (+) 0.17 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1300, puuC) 1360766-1362254 (+) 0.34 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4152, frdC) 4377399-4377795 (-) 0.00 1.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1132, hflD) 1191212-1191854 (-) -0.07 0.85 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3187, ispB) 3331731-3332703 (+) -0.04 0.78 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3700, recF) 3878170-3879244 (-) 0.01 0.98 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2767, ygcO) 2891940-2892201 (+) -0.38 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1035, ycdY) 1098862-1099417 (+) -0.04 0.83 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1973, zinT) 2039398-2040049 (+) 0.15 0.73 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0997, torA) 1058478-1061025 (+) 0.31 0.56 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0221, fadE) 240858-243303 (-) 0.41 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2417, crr) 2533855-2534365 (+) 0.66 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0459, maa) 478590-479142 (-) -0.10 0.54 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0179, lpxD) 200970-201996 (+) -1.30 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0498, ybbC) 526804-527173 (+) 0.11 0.54 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2761, ygcB) 2882574-2885241 (-) -0.77 0.45 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4319, fimG) 4546307-4546811 (+) -0.17 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0009, mog) 9305-9893 (+) -0.67 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2189, proL) 2284232-2284309 (+) -0.19 0.38 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1337, abgB) 1399833-1401279 (-) 0.32 0.56 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3296, rpsD) 3439076-3439697 (-) -0.30 0.32 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1065, mdtH) 1123340-1124549 (-) -0.90 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3523, yhjE) 3672808-3674131 (+) -0.39 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2379, alaC) 2495078-2496317 (-) -0.74 0.22 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2438, eutK) 2553249-2553750 (-) 0.04 0.89 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2970, yghF) 3110114-3110963 (-) 2.04 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3219, yhcF) 3364947-3365664 (+) 3.51 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0084, ftsI) 91412-93179 (+) -0.56 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0035, caiE) 34780-35371 (-) 0.14 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3370, frlA) 3497931-3499269 (+) -0.00 0.96 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2764, cysJ) 2888120-2889920 (-) -0.17 0.83 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1701, fadK) 1781054-1782701 (+) 3.29 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0390, aroM) 406651-407329 (+) 0.59 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4399, creC) 4634718-4636143 (+) -0.01 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3781, trxA) 3963783-3964113 (+) 0.02 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0805, fiu) 838471-840754 (-) -0.25 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0330, prpR) 346080-347667 (-) -0.67 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0776, bioF) 809603-810758 (+) 0.15 0.50 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2937, speB) 3080898-3081819 (-) 0.13 0.50 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3855, rrfA) 4038539-4038659 (+) 0.40 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2946, rsmE) 3089155-3089887 (+) 0.08 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2210, mqo) 2303129-2304776 (-) 2.47 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0872, hcr) 910404-911373 (-) 7.15 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0948, rlmL) 1007066-1009175 (+) -0.89 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3675, yidG) 3853630-3853993 (-) -0.03 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3684, yidP) 3861921-3862638 (+) -0.88 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0479, fsr) 502699-503920 (-) 4.42 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3459, panM) 3596006-3596390 (+) -1.71 0.35 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2022, hisB) 2091491-2092559 (+) 0.27 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4000, hupA) 4198303-4198576 (+) -0.16 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4019, metH) 4221850-4225534 (+) 0.15 0.80 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2548, yphF) 2676405-2677389 (-) -0.33 0.51 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0043, fixC) 44179-45466 (+) 0.08 0.86 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3511, hdeD) 3655017-3655590 (+) 0.06 0.80 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1674, ydhY) 1751874-1752501 (-) -0.20 0.69 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2018, hisL) 2088019-2088070 (+) 1.77 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4139, aspA) 4364913-4366350 (-) 0.97 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1301, puuB) 1362255-1363536 (+) 0.06 0.72 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1330, ynaI) 1392914-1393946 (-) -0.28 0.56 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4131, cadA) 4354492-4356640 (-) -0.96 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0623, cspE) 656514-656724 (+) -0.12 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0698, kdpA) 726281-727955 (-) 0.11 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0544, ybcK) 568124-569651 (+) 0.21 0.78 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3069, ileX) 3213619-3213695 (+) -1.92 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0995, torR) 1056484-1057177 (-) -1.17 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3650, spoT) 3820422-3822531 (+) -3.77 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3197, kdsD) 3339287-3340274 (+) -0.18 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2727, hypB) 2849022-2849895 (+) 2.54 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2028, ugd) 2096470-2097637 (-) 1.03 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3380, yhfW) 3506608-3507835 (-) 3.00 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0266, yagB) 279650-279959 (-) 3.16 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3026, qseC) 3168505-3169855 (+) 0.50 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1700, ydiT) 1780704-1780998 (+) 0.22 0.74 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1678, ynhG) 1755744-1756749 (-) -1.72 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3942, katG) 4131857-4134038 (+) 0.88 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2624, alpA) 2756665-2756878 (+) -0.09 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2064, asmA) 2137782-2139636 (-) -0.09 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3263, yhdU) 3410642-3410822 (+) -0.16 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3702, dnaA) 3880348-3881752 (-) -0.07 0.56 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1833, yebS) 1914281-1915565 (+) 1.47 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0196, rcsF) 219590-219995 (-) 0.39 0.45 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2774, ygcW) 2897509-2898295 (-) 0.61 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2270, yfbK) 2382016-2383744 (-) -0.25 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2461, eutP) 2572999-2573479 (-) -0.33 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0085, murE) 93165-94653 (+) -0.39 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1610, tus) 1682282-1683212 (+) -0.56 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0847, ybjL) 887356-889042 (-) -0.10 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0002, thrA) 336-2799 (+) 0.14 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2134, pbpG) 2221959-2222892 (-) 0.15 0.81 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0369, hemB) 387976-388951 (-) 0.42 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3622, waaL) 3794970-3796230 (+) 0.76 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1975, serU) 2041491-2041581 (-) 2.20 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2689, yqaA) 2814533-2814962 (-) 1.24 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0476, aes) 498237-499197 (-) 2.19 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2709, norR) 2828796-2830311 (-) -0.24 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3999, yjaG) 4197526-4198117 (+) -0.22 0.54 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2534, yfhR) 2662411-2663266 (+) 0.18 0.52 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1243, oppA) 1299205-1300837 (+) 0.01 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3458, livK) 3594473-3595583 (-) 0.09 0.76 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0867, amiD) 904135-904966 (+) 0.20 0.88 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1777, yeaC) 1859725-1859998 (-) 3.09 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1358, ydaT) 1418707-1419130 (+) 0.06 0.48 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1003, yccJ) 1066086-1066314 (-) -0.67 0.45 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3302, rpmD) 3442564-3442744 (-) -0.34 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0382, iraP) 400609-400870 (+) 0.21 0.71 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2352, gtrS) 2467152-2468484 (+) 0.82 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1067, yceH) 1125379-1126027 (+) -1.41 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3740, rsmG) 3921079-3921703 (-) -0.51 0.29 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0409, secF) 428728-429700 (+) 2.36 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1684, sufA) 1762041-1762410 (-) 0.04 0.91 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0907, serC) 956875-957964 (+) 1.62 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2674, nrdI) 2798986-2799397 (+) 0.53 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2558, mltF) 2693822-2695379 (+) 1.58 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3491, yhiM) 3632863-3633916 (+) 0.36 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3634, coaD) 3807847-3808327 (+) 0.08 0.40 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3769, ilvM) 3950223-3950487 (+) -0.12 0.77 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2372, yfdV) 2487263-2488208 (-) -0.11 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4390, nadR) 4625337-4626570 (+) 0.42 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3788, rffG) 3970544-3971612 (+) -1.31 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3688, yidQ) 3865750-3866083 (+) 0.16 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3973, birA) 4171104-4172070 (+) 2.19 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3304, rplR) 3443265-3443619 (-) 0.57 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0642, leuS) 671423-674006 (-) 2.37 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3009, yghB) 3151584-3152244 (+) -0.02 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2457, eutM) 2570178-2570472 (-) 2.71 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0004, thrC) 3733-5020 (+) 0.37 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0431, cyoB) 447873-449865 (-) 0.31 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3971, rrfB) 4169659-4169779 (+) -0.23 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3563, yiaB) 3725429-3725771 (-) 1.19 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2063, yegH) 2135925-2137509 (+) 0.46 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3628, waaB) 3801080-3802160 (-) -0.15 0.82 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1635, gstA) 1712400-1713006 (+) -1.70 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1156, tfaE) 1207739-1208342 (-) -0.58 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0879, macB) 919569-921516 (+) -0.32 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1327, ycjY) 1388956-1389877 (-) -0.02 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0083, ftsL) 91031-91397 (+) 0.14 0.38 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1127, pepT) 1185066-1186293 (+) -0.88 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4336, yjiN) 4563988-4565269 (-) 0.10 0.74 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2386, fryC) 2504668-2505916 (-) 0.49 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3867, hemN) 4050067-4051441 (+) 0.55 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1135, rluE) 1193520-1194174 (-) -0.26 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1440, ydcS) 1509677-1510823 (+) -0.58 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3908, sodA) 4098832-4099453 (+) 0.10 0.62 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0297, eaeH) 313580-314452 (+) 0.17 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0785, moaE) 818517-818970 (+) 0.14 0.66 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4216, ytfJ) 4436730-4437285 (-) 1.04 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0664, glnX) 695652-695727 (-) 0.39 0.35 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1398, paaK) 1460148-1461462 (+) -0.01 0.94 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2787, gudD) 2916066-2917407 (-) -0.71 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3972, murB) 4170079-4171108 (+) -0.39 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0820, ybiT) 855185-856778 (+) 0.16 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0163, yaeH) 183708-184095 (-) -0.41 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1593, ynfK) 1664547-1665243 (-) 0.00 0.98 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2827, thyA) 2962382-2963177 (-) 1.40 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0249, ykfF) 264527-264767 (-) -0.62 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2076, mdtC) 2156409-2159487 (+) -0.05 0.90 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0566, envY) 585369-586131 (-) 1.23 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2081, yegQ) 2163691-2165053 (+) -1.26 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1566, flxA) 1644428-1644761 (+) -0.00 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0182, lpxB) 203347-204496 (+) 0.47 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2545, yphC) 2672721-2673783 (-) -0.19 0.81 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1743, spy) 1823163-1823649 (-) 0.66 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0898, ycaD) 945093-946242 (+) -0.88 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1798, leuE) 1878144-1878783 (-) 0.22 0.22 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3856, mobB) 4038928-4039456 (-) -0.09 0.40 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1661, cfa) 1739436-1740585 (+) -0.03 0.91 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3102, yqjG) 3249045-3250032 (+) 1.85 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0759, galE) 790261-791278 (-) -0.48 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3275, rrlD) 3421901-3424805 (-) -0.74 0.40 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3323, gspA) 3451950-3453420 (-) -0.22 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2245, rhmA) 2356063-2356867 (-) -0.48 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3375, frlR) 3502073-3502805 (+) -1.12 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2439, eutL) 2553762-2554422 (-) -0.16 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1362, rzpR) 1421224-1421668 (+) 0.17 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1189, dadA) 1236793-1238092 (+) -0.07 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1384, feaR) 1444401-1445307 (-) 0.04 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0864, artP) 902228-902957 (-) 0.37 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2334, yfcQ) 2448608-2449097 (-) 7.08 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3569, xylR) 3733001-3734180 (+) -0.03 0.54 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1671, ydhX) 1748368-1749037 (-) -0.29 0.41 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0341, cynX) 359215-360370 (+) -0.20 0.26 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0662, ubiF) 694323-695499 (+) -0.18 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3549, tag) 3711114-3711678 (+) 3.38 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0840, deoR) 881198-881957 (-) 2.30 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1613, manA) 1686599-1687775 (+) 0.45 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1755, ynjC) 1835235-1836771 (+) 0.03 0.91 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1264, trpE) 1319407-1320970 (-) 1.18 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2381, ypdB) 2498404-2499139 (+) -0.01 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3960, argH) 4154872-4156246 (+) 0.11 0.67 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1111, ycfQ) 1167422-1168055 (-) -0.16 0.71 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3780, rhlB) 3962387-3963653 (-) 1.84 0.25 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3235, degS) 3380221-3381289 (+) 0.50 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1631, rsxG) 1708227-1708848 (+) 0.36 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0051, rsmA) 51608-52430 (-) -0.08 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0770, ybhI) 801109-802543 (+) 0.53 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2173, yeiR) 2265850-2266837 (+) -0.19 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1887, cheW) 1970859-1971363 (-) -0.05 0.81 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0975, hyaD) 1034992-1035580 (+) -0.29 0.48 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2213, ada) 2307362-2308427 (-) -4.10 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0659, ybeY) 691096-691564 (-) -0.25 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1516, lsrB) 1603074-1604097 (+) -4.57 0.38 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0320, yahF) 336001-337549 (+) -1.01 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1679, sufE) 1756897-1757314 (-) 1.44 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2294, yfbU) 2410121-2410616 (-) 2.95 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3071, yqjI) 3214800-3215424 (+) 2.94 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2958, yggN) 3098925-3099645 (-) 2.68 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4071, nrfB) 4287267-4287834 (+) -0.66 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4351, mrr) 4584971-4585886 (+) 0.34 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4308, yjhR) 4532813-4534054 (+) 0.31 0.26 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3353, yheT) 3481223-3482246 (+) -0.10 0.84 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3495, uspA) 3638133-3638568 (+) 0.58 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1406, ydbC) 1472244-1473105 (+) -0.13 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4086, alsC) 4306511-4307492 (-) -0.16 0.68 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3915, fieF) 4104491-4105394 (+) 0.23 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0944, ycbF) 1003169-1003880 (+) 1.31 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4128, yjdK) 4350606-4350903 (+) 0.14 0.73 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3809, dapF) 3992784-3993609 (+) -0.27 0.58 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4281, yjhD) 4504648-4504879 (-) -0.84 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1345, intR) 1410023-1411259 (-) -0.87 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3014, yqhH) 3156648-3156906 (+) -0.21 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3508, yhiD) 3653277-3653925 (-) 0.88 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0293, ecpA) 309307-309895 (-) 0.04 0.86 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3172, argG) 3316658-3318002 (+) 0.24 0.19 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1461, pptA) 1531075-1531309 (+) -0.05 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2551, glyA) 2682275-2683529 (-) 0.21 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2522, sseB) 2652178-2652955 (-) 0.19 0.53 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2454, eutJ) 2567522-2568359 (-) 3.14 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0845, ybjJ) 885353-886562 (-) 1.10 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0061, araD) 65854-66550 (-) 1.68 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2481, hyfA) 2599222-2599840 (+) 2.28 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1919, dcyD) 1996517-1997504 (-) -0.08 0.62 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3089, sstT) 3237965-3239210 (+) 0.21 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3369, yhfL) 3497469-3497637 (+) -0.15 0.67 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0450, glnK) 471821-472160 (+) -0.02 0.95 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4311, nanC) 4536807-4537524 (-) 0.42 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3807, cyaY) 3991761-3992082 (-) -0.49 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1390, paaC) 1453187-1453934 (+) 0.10 0.66 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3165, rpsO) 3309436-3309706 (-) -1.13 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4297, yjhG) 4520149-4522117 (-) 1.52 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3143, yraI) 3286111-3286807 (+) 0.02 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0871, poxB) 908553-910272 (-) -0.16 0.69 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1843, yobB) 1923463-1924120 (+) -0.55 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2383, fryA) 2500011-2502507 (-) -0.64 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0418, pgpA) 435812-436331 (+) 1.49 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3170, rimP) 3315575-3316028 (-) 0.05 0.85 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2167, fruA) 2257740-2259432 (-) 1.46 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3182, dacB) 3326984-3328418 (+) -0.03 0.71 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1333, uspE) 1395695-1396646 (-) 0.75 0.45 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2066, udk) 2140330-2140972 (-) 0.27 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1006, rutG) 1067733-1069062 (-) 0.70 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1575, dicB) 1647632-1647821 (+) -0.33 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3964, yijD) 4159793-4160153 (+) -0.58 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4116, adiY) 4335190-4335952 (-) 0.20 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0665, glnV) 695764-695839 (-) -0.71 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3775, ppiC) 3957554-3957836 (-) -0.01 0.85 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3990, thiH) 4188757-4189891 (-) -0.34 0.62 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2513, yfgM) 2636684-2637305 (-) 0.40 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2627, yfjK) 2759372-2761562 (-) 0.36 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0943, ycbV) 1002661-1003177 (+) 0.02 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0095, ftsZ) 105304-106456 (+) -0.00 0.99 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3309, rplX) 3445474-3445789 (-) -1.52 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0971, serT) 1030847-1030935 (-) 0.73 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0875, aqpZ) 914574-915270 (-) -0.03 0.95 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2360, yfdQ) 2472053-2472878 (+) 1.06 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3488, yhiJ) 3628990-3630613 (-) -0.19 0.53 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0915, lpxK) 967588-968575 (+) 0.21 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1053, mdtG) 1113486-1114713 (-) -8.02 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2771, ygcS) 2894554-2895892 (-) -0.68 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1266, yciV) 1321243-1322125 (+) 1.11 0.26 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2841, araE) 2978785-2980204 (-) -0.00 0.98 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2822, recC) 2957081-2960450 (-) -0.15 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2983, yghQ) 3129362-3130430 (-) 0.10 0.69 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3389, aroB) 3515419-3516508 (-) -0.03 0.83 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4260, pepA) 4482462-4483974 (-) 0.00 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1157, stfE) 1208341-1208842 (-) -0.45 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1952, dsrB) 2022658-2022847 (-) -0.11 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1800, dmlA) 1879935-1881021 (+) 1.30 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0117, yacH) 129406-131260 (-) 0.00 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1567, intK) 1645197-1645380 (-) 0.08 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1276, acnA) 1333854-1336530 (+) 7.40 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4189, bsmA) 4414463-4414793 (-) 7.58 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3613, envC) 3784860-3786120 (+) 1.66 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4066, yjcF) 4279805-4281098 (-) 0.08 0.73 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1070, flgN) 1128636-1129053 (-) -0.24 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0705, ybfL) 736047-737184 (+) 1.66 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0661, miaB) 692753-694178 (-) 1.34 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0565, ompT) 583902-584856 (-) 0.18 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3299, rpmJ) 3440639-3440756 (-) 0.16 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3229, sspA) 3374803-3375442 (-) 0.07 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0213, yafS) 234815-235538 (+) -0.22 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1879, flhA) 1960995-1963074 (-) -0.35 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1742, ves) 1822385-1822961 (-) -0.09 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2993, hybD) 3138813-3139308 (-) -0.96 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3141, agaI) 3284291-3285047 (+) 1.33 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3497, rsmJ) 3640402-3641155 (-) -0.16 0.78 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3671, ilvB) 3849118-3850807 (-) 0.16 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4348, hsdS) 4578090-4579485 (-) -0.32 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3501, arsR) 3646550-3646904 (+) -0.41 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3473, yhhS) 3608538-3609756 (-) 0.04 0.85 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0587, fepE) 617476-618610 (+) -2.43 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2753, iap) 2874602-2875640 (+) -1.27 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3164, pnp) 3307054-3309190 (-) -1.48 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0684, fldA) 710157-710688 (-) -2.10 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4045, yjbJ) 4257259-4257469 (+) -2.57 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3743, asnC) 3924567-3925026 (-) 0.28 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3520, yhjB) 3669314-3669917 (-) 1.50 0.35 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0713, ybgL) 744387-745122 (+) 1.64 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1181, ycgN) 1228037-1228499 (+) 3.35 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0802, ybiJ) 836887-837148 (-) 0.21 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1147, ymfL) 1202490-1203048 (+) 0.10 0.58 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4009, rrlE) 4208065-4210969 (+) 3.15 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0832, gsiD) 871112-872024 (+) 0.08 0.89 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1061, dinI) 1120464-1120710 (-) -0.08 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3153, yhbO) 3296995-3297514 (+) -0.16 0.77 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3678, yidJ) 3854933-3856427 (-) -0.13 0.66 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1991, cobT) 2061411-2062491 (-) -0.01 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4151, frdD) 4377029-4377389 (-) 1.84 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1450, mcbR) 1518285-1518951 (+) 0.07 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0946, zapC) 1005174-1005717 (+) 0.88 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0333, prpC) 349235-350405 (+) -0.76 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2943, galP) 3086305-3087700 (+) -0.49 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1281, pyrF) 1339944-1340682 (+) -0.33 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1651, gloA) 1725860-1726268 (+) -0.15 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2014, plaP) 2083727-2085086 (-) 0.17 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3745, viaA) 3926174-3927626 (-) 0.01 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0121, speE) 135597-136464 (-) 0.76 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4225, chpB) 4446714-4447065 (+) 1.91 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0702, ybfB) 732998-733325 (+) 0.37 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3484, yhhI) 3622400-3623537 (+) 1.42 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0551, quuD) 573178-573562 (+) 0.63 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1711, btuC) 1792195-1793176 (-) 1.30 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4049, dusA) 4259736-4260729 (+) 1.85 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2318, truA) 2432845-2433658 (-) -0.14 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0511, ybbW) 536856-538311 (+) 0.20 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3038, ygiC) 3178442-3179603 (+) 0.09 0.76 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2611, ypjD) 2745983-2746775 (+) -0.17 0.63 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3241, aaeA) 3386215-3387148 (-) 0.14 0.62 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1773, ydjI) 1854956-1855793 (-) 5.65 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3431, glgX) 3567368-3569342 (-) 0.07 0.81 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1314, ycjR) 1374057-1374846 (+) -0.46 0.45 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2127, mlrA) 2212887-2213619 (+) -0.27 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3553, ghrB) 3715332-3716307 (+) 2.07 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0833, yliE) 872201-874550 (+) 0.10 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3054, ygiF) 3197685-3198987 (-) -0.12 0.52 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4243, ridA) 4468549-4468936 (-) -0.87 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0234, yafP) 252708-253161 (+) 0.22 0.58 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4150, ampC) 4375833-4376967 (-) 0.60 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1734, chbF) 1815171-1816524 (-) 2.83 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1696, ydiP) 1776413-1777325 (-) 1.49 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3167, rbfA) 3310798-3311200 (-) 0.53 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0078, ilvH) 87356-87848 (+) 0.73 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1237, hns) 1291731-1292145 (-) -0.29 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4012, yjaB) 4211702-4212146 (-) -0.05 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0073, leuB) 80866-81958 (-) -0.42 0.22 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0304, ykgC) 317899-319225 (-) -4.80 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1315, ycjS) 1374855-1375911 (+) 0.37 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3539, yhjV) 3698585-3699857 (+) -0.16 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1844, exoX) 1924143-1924806 (+) 0.25 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1392, paaE) 1454453-1455524 (+) -0.11 0.83 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1792, yeaO) 1874932-1875280 (+) 0.61 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0851, nfsA) 890406-891129 (+) 0.37 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2225, yfaP) 2325388-2326165 (-) -0.06 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3536, bcsE) 3694480-3696052 (+) -0.58 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3332, gspK) 3460945-3461929 (+) 0.09 0.89 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0686, ybfF) 711260-712025 (-) 0.62 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2769, ygcQ) 2892940-2893801 (-) 0.98 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1126, potA) 1183680-1184817 (-) 0.79 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0737, tolQ) 774375-775068 (+) 0.26 0.25 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0503, selU) 529355-530450 (-) -8.30 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0145, dksA) 160148-160604 (-) 3.49 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1972, yedZ) 2038506-2039142 (+) -0.80 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0961, yccF) 1023124-1023571 (-) -0.57 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2718, hycH) 2841057-2841468 (-) 0.28 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2883, guaD) 3023787-3025107 (+) -0.08 0.75 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4107, yjdN) 4323320-4323764 (-) -0.31 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2208, napF) 2301024-2301519 (-) -0.02 0.96 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3566, xylF) 3729153-3730146 (+) 0.20 0.41 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4123, dcuB) 4345426-4346767 (-) -1.62 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3239, yhcO) 3383878-3384151 (-) 0.50 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0300, ykgA) 315709-316393 (-) -0.10 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0087, mraY) 96001-97084 (+) 0.09 0.84 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4022, rluF) 4228376-4229249 (+) 0.02 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2781, mazG) 2907915-2908707 (-) 0.26 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1209, lolB) 1262099-1262723 (-) 0.03 0.90 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2204, napH) 2296736-2297600 (-) 0.83 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2187, yejL) 2282150-2282378 (+) -0.36 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3923, uspD) 4111315-4111744 (+) -1.05 0.35 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3607, cysE) 3779763-3780585 (-) -1.30 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1821, mntP) 1903711-1904278 (+) -3.36 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2644, yfjY) 2774407-2774890 (+) 0.05 0.89 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1691, ydiN) 1770535-1771801 (+) 1.11 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0139, htrE) 152828-155426 (-) -0.34 0.35 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0635, mrdA) 665538-667440 (-) -0.18 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3504, yhiS) 3649313-3651736 (+) -0.11 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2495, yfgD) 2615599-2615959 (+) 3.13 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3645, dinD) 3815782-3816607 (+) -0.04 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0467, priC) 489508-490036 (-) -0.05 0.75 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2057, wcaC) 2128876-2130094 (-) -1.30 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2814, metZ) 2945408-2945485 (+) -0.53 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2006, yeeW) 2075963-2076131 (+) -0.13 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3094, exuR) 3244673-3245450 (+) -0.25 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0568, nfrA) 587204-590177 (-) -1.61 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2179, yejE) 2273294-2274320 (+) -1.61 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3819, rarD) 4001310-4002201 (-) -2.55 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0558, ybcV) 578406-578817 (-) -1.45 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2666, yqaE) 2794891-2795050 (-) 1.10 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0215, dnaQ) 236066-236798 (+) -0.08 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2177, yejA) 2270385-2272200 (+) -0.05 0.80 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1977, asnT) 2042572-2042648 (+) -0.19 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1553, rzpQ) 1637053-1637551 (-) -1.15 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0115, aceF) 125694-127587 (+) 0.70 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1449, curA) 1517050-1518088 (+) 0.10 0.63 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2714, ascG) 2836275-2837286 (-) -0.19 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3516, gadX) 3663008-3663833 (-) -0.40 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1012, rutA) 1072085-1073234 (-) -0.02 0.77 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3519, treF) 3667614-3669264 (+) 1.07 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0648, ybeU) 678730-679438 (+) -0.07 0.86 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2528, iscA) 2657584-2657908 (-) -0.42 0.26 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1592, clcB) 1663338-1664595 (+) 1.20 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1092, fabD) 1148950-1149880 (+) -0.01 0.99 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1864, yebC) 1945434-1946175 (-) -0.71 0.45 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1927, amyA) 2004179-2005667 (+) -1.61 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2169, fruB) 2260386-2261517 (-) -1.58 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3136, agaS) 3279997-3281152 (+) -0.53 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4013, metA) 4212302-4213232 (+) 0.92 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1305, pspB) 1366824-1367049 (+) 0.79 0.28 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0222, gmhA) 243542-244121 (+) -0.43 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0852, rimK) 891189-892092 (+) 0.05 0.87 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1910, cysT) 1989937-1990011 (-) 1.01 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1112, bhsA) 1168295-1168553 (+) 2.60 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2042, wcaN) 2111457-2112351 (-) 0.57 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1349, recT) 1412007-1412817 (-) 1.23 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3059, plsY) 3202715-3203333 (+) 2.15 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1251, yciI) 1308592-1308889 (-) -0.68 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0136, yadK) 151002-151599 (-) 0.79 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3663, yicN) 3839972-3840425 (-) 0.03 0.82 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1352, kilR) 1416031-1416253 (-) -0.30 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1102, fhuE) 1158584-1160774 (-) -2.38 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3642, pyrE) 3813149-3813791 (-) -1.01 0.52 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0481, ybaK) 505826-506306 (-) -0.27 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2430, yfeW) 2546123-2547428 (+) -0.19 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2752, cysD) 2873442-2874351 (-) 0.00 1.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3018, plsC) 3160765-3161503 (-) -0.07 0.80 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3194, mlaE) 3336487-3337270 (-) 0.34 0.19 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0088, murD) 97086-98403 (+) -0.02 0.94 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3113, tdcF) 3257742-3258132 (-) 0.35 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4027, yjbF) 4234284-4234923 (+) 9.05 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0863, artI) 901479-902211 (-) 1.53 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0616, citE) 648804-649713 (-) -0.01 0.89 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2205, napG) 2297586-2298282 (-) -0.19 0.67 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3981, secE) 4175380-4175764 (+) -1.21 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2594, rluD) 2733052-2734033 (-) -0.56 0.29 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4102, phnF) 4319719-4320445 (-) -0.11 0.81 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0399, phoB) 416365-417055 (+) 0.36 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1771, ydjG) 1853014-1853995 (-) -0.20 0.73 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0124, gcd) 138834-141225 (-) 0.06 0.91 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1812, pabB) 1892828-1894190 (+) 0.74 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0169, rpsB) 189873-190599 (+) 0.19 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0856, potH) 895356-896310 (+) -0.41 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1068, yceM) 1126028-1126952 (+) 5.45 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1783, yeaG) 1864931-1866866 (+) -0.39 0.32 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3432, glgB) 3569338-3571525 (-) -1.38 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4153, frdB) 4377805-4378540 (-) 0.02 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3525, yhjH) 3676442-3677210 (-) 0.16 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0422, xseB) 440324-440567 (-) -0.17 0.58 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3640, dut) 3811954-3812410 (+) 1.48 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4072, nrfC) 4287830-4288502 (+) -0.36 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1908, yecA) 1988977-1989643 (-) -4.95 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2230, yfaA) 2332977-2334666 (-) -0.48 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4334, yjiL) 4561944-4562712 (-) -0.54 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4180, rlmB) 4407297-4408029 (+) 0.31 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2267, elaA) 2379103-2379565 (-) -0.49 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0525, ppiB) 553165-553660 (-) -0.87 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1242, ychE) 1297820-1298468 (+) -0.33 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1340, smrA) 1404002-1404566 (+) -0.17 0.75 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2073, yegL) 2150492-2151152 (-) -0.42 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1652, rnt) 1726370-1727018 (+) 2.37 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3482, rhsB) 3617214-3621450 (+) -0.30 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4360, yjjA) 4597717-4598212 (-) -0.43 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2389, yfeO) 2507651-2508908 (+) 0.04 0.86 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1722, ydiY) 1803348-1804107 (-) -0.08 0.68 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3339, tufA) 3468166-3469351 (-) -0.12 0.70 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0493, ybbO) 517563-518373 (-) -0.14 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0119, yacL) 134387-134750 (+) -0.25 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1890, motA) 1974275-1975163 (-) -0.32 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3585, yiaU) 3750014-3750989 (+) 0.16 0.69 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3710, mdtL) 3889637-3890813 (+) -0.08 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4401, arcA) 4637612-4638329 (-) 0.08 0.81 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1309, ycjM) 1368239-1369919 (+) 0.33 0.58 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1097, yceG) 1153334-1154357 (+) -0.08 0.68 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4029, yjbH) 4235656-4237753 (+) -3.14 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3336, bfr) 3464270-3464747 (-) -0.31 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3034, nudF) 3175302-3175932 (-) 1.63 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0660, ybeZ) 691560-692601 (-) 0.49 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1951, rcsA) 2021991-2022615 (+) -0.16 0.53 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3951, pflD) 4142017-4144315 (+) -0.89 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3469, zntA) 3604473-3606672 (+) 0.47 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0180, fabZ) 202100-202556 (+) -0.37 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1658, purR) 1735867-1736893 (+) -0.85 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3334, gspM) 3463103-3463565 (+) -0.33 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0796, ybiH) 829194-829866 (-) 7.02 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4204, yjfZ) 4424650-4425445 (-) 7.37 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2165, psuG) 2255450-2256389 (-) 1.31 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0290, ecpD) 304397-306041 (-) -0.44 0.25 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1672, ydhW) 1749100-1749748 (-) -0.38 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0881, clpS) 922135-922456 (+) 1.61 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3752, rbsK) 3935316-3936246 (+) 1.25 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2507, guaA) 2628979-2630557 (-) -0.48 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2903, gcvP) 3044189-3047063 (-) -0.32 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2427, murR) 2542773-2543631 (-) -0.24 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0364, yaiS) 383282-383840 (-) -0.51 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1443, ydcV) 1512785-1513580 (+) -6.78 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3453, ugpB) 3589031-3590348 (-) -5.56 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2184, yejH) 2278653-2280414 (+) 0.01 0.96 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1286, rnb) 1345001-1346936 (-) -0.51 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1598, ydgD) 1669983-1670805 (+) -2.32 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0814, ompX) 849672-850188 (+) 0.83 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2371, yfdE) 2486044-2487190 (-) 0.02 0.90 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1744, astE) 1823978-1824947 (-) 0.05 0.90 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0918, kdsB) 970074-970821 (+) -0.24 0.22 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0758, galT) 789205-790252 (-) -0.19 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0049, apaH) 50379-51222 (-) -0.05 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2103, thiD) 2181737-2182538 (-) 1.64 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1058, yceO) 1118529-1118670 (-) 0.14 0.68 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2012, yeeD) 2082249-2082477 (-) -0.73 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4207, fklB) 4426957-4427578 (+) 0.62 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0454, ybaZ) 475205-475595 (-) 1.04 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0461, tomB) 479557-479932 (-) 1.53 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1434, ydcN) 1504195-1504732 (+) 0.04 0.69 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2445, yffN) 2559646-2560015 (+) 1.54 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1993, cobU) 2063242-2063788 (-) 2.03 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2442, intZ) 2556879-2558088 (+) -0.22 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1045, ymdB) 1105042-1105576 (+) -0.60 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3847, pepQ) 4029183-4030515 (+) 0.94 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3343, tusB) 3472699-3472987 (-) -0.23 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3551, bisC) 3712083-3714417 (-) 0.20 0.50 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2055, wcaE) 2126927-2127674 (-) 0.15 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4318, fimF) 4545764-4546295 (+) 0.02 0.85 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0244, thrW) 262094-262170 (+) 1.48 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0613, citG) 645853-646732 (-) -0.64 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0911, rpsA) 961217-962891 (+) 1.82 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3492, yhiN) 3634230-3635433 (-) 0.10 0.63 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1110, ycfJ) 1166821-1167361 (+) -1.38 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2843, kduI) 2981309-2982146 (-) -4.57 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0953, rmf) 1014937-1015105 (+) 0.06 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2900, yqfB) 3041333-3041645 (-) -0.19 0.50 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1822, rlmA) 1904274-1905084 (-) 0.08 0.83 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1259, yciG) 1313879-1314059 (-) -0.95 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0530, sfmA) 557434-557977 (+) -2.24 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3392, hofP) 3518636-3519041 (-) -0.08 0.71 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0521, ybcF) 549661-550555 (+) -0.01 0.97 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3037, ygiB) 3177765-3178437 (+) 0.92 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3658, selC) 3834244-3834339 (+) 0.47 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1133, mnmA) 1191889-1192996 (-) -0.49 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2572, rseA) 2706775-2707426 (-) -0.35 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1332, ynaJ) 1395388-1395646 (+) 0.08 0.94 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3011, yqhD) 3153376-3154540 (+) -1.17 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1597, asr) 1669399-1669708 (+) -2.42 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1134, nudJ) 1193049-1193511 (-) -2.81 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1270, btuR) 1325790-1326381 (-) 1.33 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1076, flgE) 1131796-1133005 (+) 0.76 0.26 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1096, pabC) 1152522-1153332 (+) 2.82 0.26 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2846, yqeH) 2985557-2986190 (+) 0.60 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0797, rhlE) 830094-831459 (+) 0.18 0.52 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4099, phnI) 4317621-4318686 (-) 2.61 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0655, gltI) 686061-686970 (-) 0.94 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2629, yfjM) 2763534-2763798 (-) -0.45 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0155, clcA) 175106-176528 (+) 0.12 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2942, metK) 3084727-3085882 (+) -0.56 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2482, hyfB) 2599839-2601858 (+) 0.40 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0601, ybdM) 633969-634599 (-) -0.10 0.67 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0774, bioA) 807190-808480 (-) -1.97 0.46 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2133, dld) 2220206-2221922 (+) -2.81 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2847, yqeI) 2986523-2987333 (+) -1.33 0.51 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0858, ybjO) 897211-897700 (+) -0.54 0.63 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1310, ycjN) 1369932-1371225 (+) -0.08 0.71 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1117, lolD) 1175841-1176543 (+) -0.15 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3561, wecH) 3723909-3724905 (+) -0.19 0.22 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2489, hyfI) 2608727-2609486 (+) -0.42 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2355, yfdL) 2469565-2470144 (-) 1.28 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1897, otsB) 1979610-1980411 (-) 0.32 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3906, rhaR) 4096668-4097517 (+) -0.44 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1107, nagZ) 1163317-1164343 (+) -0.10 0.54 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1987, cbl) 2057987-2058938 (-) -0.11 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0337, codA) 355394-356678 (+) -0.16 0.68 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3748, rbsD) 3931373-3931793 (+) -2.12 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3909, kdgT) 4099712-4100696 (+) 0.22 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0072, leuC) 79463-80864 (-) -0.07 0.77 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4119, melA) 4339933-4341289 (+) 0.09 0.67 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1525, sad) 1611338-1612727 (-) -0.22 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4314, fimA) 4541137-4541686 (+) -0.48 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1178, pliG) 1226293-1226695 (-) 0.20 0.41 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3933, ftsN) 4120402-4121362 (-) -0.22 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1313, ycjQ) 1372986-1374039 (+) -1.37 0.50 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2801, fucP) 2932256-2933573 (+) 3.12 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3756, rrsC) 3939830-3941372 (+) -0.24 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1808, yoaA) 1889348-1891259 (-) -0.75 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3181, greA) 3326260-3326737 (-) -0.89 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3452, ugpA) 3588046-3588934 (-) -0.05 0.74 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2220, atoC) 2319887-2321273 (+) -0.26 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0836, bssR) 877470-877854 (+) 0.16 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2696, csrA) 2816982-2817168 (-) 0.15 0.78 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3333, gspL) 3461943-3463107 (+) -3.16 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0096, lpxC) 106556-107474 (+) -0.37 0.55 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0843, ybjH) 884168-884453 (-) -0.23 0.19 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2224, atoB) 2324130-2325315 (+) 0.67 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1289, ycjD) 1349430-1349784 (-) -0.11 0.45 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0827, moeA) 864351-865587 (-) -0.83 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0535, fimZ) 563070-563703 (-) -0.85 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4056, yjbQ) 4268260-4268677 (+) 0.70 0.51 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4373, rimI) 4606207-4606654 (+) -0.93 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2281, nuoI) 2393929-2394472 (-) -1.47 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3249, mreD) 3396408-3396897 (-) 5.04 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1558, cspF) 1639878-1640091 (+) -0.25 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0437, clpP) 455900-456524 (+) -0.91 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0197, metQ) 220112-220928 (-) -0.03 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3591, selA) 3757880-3759272 (-) -0.33 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2400, gltX) 2517278-2518694 (-) -0.27 0.58 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2483, hyfC) 2601868-2602816 (+) -0.75 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3770, ilvE) 3950506-3951436 (+) 2.71 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0488, ybbJ) 513624-514083 (-) 0.79 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0727, sucB) 760744-761962 (+) -0.34 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3764, yifE) 3946108-3946447 (+) -0.60 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2695, serV) 2816574-2816667 (-) 0.89 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0884, infA) 925447-925666 (-) 0.33 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2831, mutH) 2967683-2968373 (+) -0.36 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2420, yfeS) 2535770-2536505 (+) 0.56 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1136, icd) 1194345-1195596 (+) -1.52 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1551, ynfN) 1635977-1636133 (-) -0.23 0.52 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3363, ppiA) 3489746-3490319 (-) 1.14 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3357, crp) 3484141-3484774 (+) 0.31 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1118, lolE) 1176542-1177787 (+) -0.10 0.83 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4097, phnK) 4316028-4316787 (-) 1.10 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1394, paaG) 1456287-1457076 (+) 0.12 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0837, yliI) 877964-879080 (+) 3.97 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3619, hldD) 3792009-3792942 (+) -0.00 0.91 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0109, nadC) 117751-118645 (-) 1.09 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0433, ampG) 451293-452769 (-) 2.29 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3047, yqiH) 3187902-3188652 (+) -0.29 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2919, scpB) 3062014-3062800 (+) 1.91 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2364, dsdC) 2474715-2475651 (-) 0.12 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0343, lacY) 361149-362403 (-) 3.91 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1732, katE) 1811890-1814152 (+) -0.13 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2745, truD) 2868276-2869326 (-) -0.96 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2917, scpA) 3058871-3061016 (+) -0.56 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1569, dicC) 1645643-1645874 (-) -0.68 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3881, yihT) 4069795-4070674 (-) 1.70 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2540, hcaC) 2668929-2669250 (+) -7.63 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2286, nuoC) 2400076-2401867 (-) -4.87 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0733, cydA) 770680-772249 (+) -0.90 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4350, hsdR) 4581271-4584784 (-) 0.03 0.83 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2816, metV) 2945628-2945705 (+) -0.29 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0651, rihA) 682699-683635 (-) 1.13 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0502, ylbG) 528818-529240 (-) 0.19 0.91 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4239, treC) 4461076-4462732 (-) 0.17 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2842, kduD) 2980518-2981280 (-) 0.81 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0844, ybjI) 884538-885354 (-) -0.60 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1482, osmC) 1554648-1555080 (+) 0.05 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0151, fhuC) 169777-170575 (+) -0.05 0.40 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0629, ybeF) 659647-660601 (-) 0.33 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3407, yhgF) 3535406-3537728 (+) -0.03 0.62 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0576, pheP) 601181-602558 (+) -0.19 0.53 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2253, arnB) 2363949-2365089 (+) 0.15 0.62 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0761, modE) 793078-793867 (-) -0.62 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3714, purP) 3893294-3894632 (-) 2.10 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4144, yjeI) 4370831-4371185 (+) 2.38 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3514, mdtF) 3658436-3661550 (+) 3.04 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0133, panC) 147943-148795 (-) -1.29 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1704, aroH) 1786458-1787505 (+) 1.18 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3237, argR) 3382724-3383195 (+) 0.59 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1252, tonB) 1309112-1309832 (+) 1.76 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2659, csiD) 2787006-2787984 (+) 0.19 0.53 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3912, cpxR) 4102994-4103693 (-) -0.12 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3250, mreC) 3396896-3398000 (-) 1.08 0.22 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4328, iadA) 4556376-4557549 (-) -0.68 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4002, zraP) 4199285-4199711 (-) 2.74 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0654, gltJ) 685151-685892 (-) 0.37 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0640, holA) 669796-670828 (-) -4.34 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1886, tar) 1969053-1970715 (-) -0.68 0.30 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1611, fumC) 1683208-1684612 (-) -0.15 0.75 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3269, yhdX) 3418155-3419337 (+) 1.18 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4030, psiE) 4238347-4238758 (+) 0.09 0.89 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1290, sapF) 1349851-1350658 (-) 0.03 0.91 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0574, cusB) 596701-597925 (+) 0.12 0.66 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0226, dinJ) 246241-246502 (-) 2.34 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3796, argX) 3980397-3980474 (+) -0.27 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1602, pntB) 1672995-1674384 (-) -0.15 0.48 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1165, ymgA) 1215290-1215563 (+) -1.02 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4304, sgcC) 4526952-4528266 (-) -1.55 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3330, gspI) 3459995-3460373 (+) -0.34 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3903, rhaA) 4092745-4094005 (-) -0.08 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2252, ais) 2363039-2363642 (-) 0.69 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0357, frmR) 378829-379105 (-) -1.46 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3949, frwC) 4140552-4141632 (+) 0.05 0.69 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0819, ybiS) 854046-854967 (-) 0.48 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0174, ispU) 194902-195664 (+) -0.02 0.95 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0164, yaeI) 184256-185069 (-) -0.10 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1395, paaH) 1457077-1458505 (+) 2.47 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3364, tsgA) 3490589-3491771 (+) 1.49 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3106, yhaK) 3252340-3253042 (+) -2.07 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2415, ptsH) 2531785-2532043 (+) -0.49 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1295, ymjA) 1355446-1355692 (-) 0.02 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0134, panB) 148806-149601 (-) 0.11 0.22 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4113, basR) 4331304-4331973 (-) 0.60 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1981, shiA) 2051666-2052983 (+) -2.83 0.19 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3825, pldB) 4007192-4008215 (+) -3.06 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0443, fadM) 463625-464024 (+) -0.13 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1753, ynjA) 1833538-1834087 (+) 0.53 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2980, glcC) 3126293-3127058 (+) -0.13 0.59 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2779, eno) 2904664-2905963 (-) -0.18 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2180, yejF) 2274321-2275911 (+) -0.85 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3412, bioH) 3542095-3542866 (-) -0.41 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3620, waaF) 3792951-3793998 (+) 3.85 0.16 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3925, glpX) 4112591-4113602 (-) -0.19 0.54 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3673, emrD) 3851944-3853129 (+) 4.82 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1179, ycgL) 1226936-1227230 (+) -0.18 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2681, ygaY) 2806337-2807515 (+) -0.92 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2755, ygbT) 2876876-2877794 (-) 0.22 0.53 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0743, lysT) 779776-779852 (+) -0.28 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4196, ulaD) 4420208-4420859 (+) -0.22 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4248, yjgH) 4470836-4471232 (-) -0.17 0.35 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1762, ynjI) 1841854-1842895 (-) -0.17 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2733, mutS) 2855114-2857676 (+) -0.31 0.25 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2989, yghU) 3136748-3137615 (+) 0.16 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4353, yjiX) 4586898-4587102 (-) -0.26 0.38 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1445, ydcX) 1515412-1515586 (+) -0.22 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2327, yfcA) 2442772-2443582 (-) 0.30 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3581, yiaQ) 3746599-3747262 (+) 1.86 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1524, glsB) 1610348-1611275 (-) 0.33 0.70 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0620, dpiA) 653084-653765 (+) -0.35 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2374, frc) 2490025-2491276 (-) 0.71 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2490, hyfJ) 2609478-2609892 (+) 0.27 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3886, yihY) 4074168-4075041 (+) -0.01 0.99 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3934, cytR) 4121453-4122479 (-) -0.47 0.41 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2262, menB) 2373983-2374841 (-) -0.16 0.54 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2586, yfiM) 2722149-2722473 (+) -0.18 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1906, yecH) 1987274-1987514 (-) 2.56 0.06 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3192, mlaC) 3335277-3335913 (-) 0.13 0.85 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2799, fucO) 2929886-2931035 (-) 0.20 0.51 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0598, cstA) 629116-631222 (+) 2.84 0.07 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4138, dcuA) 4363494-4364796 (-) 0.67 0.36 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3221, yhcH) 3367035-3367500 (-) -0.06 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3636, rpmG) 3809272-3809440 (-) 0.16 0.72 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0137, yadL) 151625-152231 (-) 0.29 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1234, rssA) 1288467-1289373 (+) 0.12 0.33 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1256, ompW) 1312043-1312682 (+) -12.48 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3401, hslO) 3527795-3528674 (+) -0.24 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3988, rpoC) 4183372-4187596 (+) -0.41 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1634, dtpA) 1710792-1712295 (+) 0.32 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3875, ompL) 4061625-4062318 (-) -8.01 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2257, arnT) 2368929-2370582 (+) -1.85 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3995, rsd) 4194354-4194831 (-) -0.16 0.74 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2402, valX) 2519072-2519148 (+) -0.03 0.95 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2986, yghT) 3132152-3132845 (+) -1.85 0.15 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1397, paaJ) 1458916-1460122 (+) -0.19 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2409, yfeR) 2523951-2524878 (-) 0.28 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1782, mipA) 1863749-1864496 (-) -0.16 0.58 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0794, ybhF) 826467-828204 (-) -0.14 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1069, murJ) 1127061-1128597 (+) -0.40 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0217, yafT) 237334-238120 (+) -0.28 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2132, bglX) 2217713-2220011 (-) 0.83 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3210, arcB) 3348710-3351047 (-) -0.01 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1365, ynaK) 1423400-1423664 (+) -1.03 0.61 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1878, flhE) 1960603-1960996 (-) -0.14 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3039, ygiD) 3179640-3180429 (-) -2.04 0.22 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1845, ptrB) 1924802-1926863 (-) -0.72 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2832, ygdQ) 2968441-2969155 (+) 0.10 0.72 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4067, actP) 4281275-4282925 (-) 2.55 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2824, ygdB) 2960770-2961178 (-) 3.84 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3443, yrhA) 3581060-3582332 (+) -0.59 0.11 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0947, ycbX) 1005713-1006823 (-) -0.27 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0247, ykfG) 263479-263956 (-) -0.58 0.21 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0112, aroP) 120177-121551 (-) 2.34 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2209, eco) 2301926-2302415 (+) 0.13 0.44 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1591, dmsD) 1662529-1663144 (+) 0.28 0.34 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0765, modC) 795776-796835 (+) 0.32 0.42 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2735, ygbI) 2858488-2859256 (-) -0.06 0.71 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3706, mnmE) 3884850-3886215 (+) -0.05 0.76 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4378, yjjV) 4611503-4612283 (+) 0.26 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0680, glnS) 705315-706980 (+) -2.94 0.23 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2458, eutD) 2570510-2571527 (-) -1.34 0.24 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1552, cspI) 1636478-1636691 (-) -0.05 0.56 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2605, yfiB) 2741646-2742129 (+) 0.24 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1764, selD) 1844988-1846032 (-) -0.06 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2045, wcaK) 2115147-2116428 (-) 1.31 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0052, pdxA) 52426-53416 (-) -0.14 0.80 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1888, cheA) 1971383-1973348 (-) -0.28 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0998, torD) 1061021-1061621 (+) 1.73 0.05 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3266, acrF) 3413054-3416159 (+) -0.30 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2217, rcsB) 2314198-2314849 (+) -0.03 0.94 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2647, ypjA) 2776167-2780748 (-) 0.01 0.95 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0329, yahO) 345707-345983 (+) -0.28 0.41 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0114, aceE) 123016-125680 (+) 0.04 0.82 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2584, pka) 2717974-2720635 (+) -0.45 0.20 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3020, ygiS) 3164132-3165740 (-) -0.19 0.26 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4010, rrfE) 4211062-4211182 (+) 0.71 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3779, gpp) 3960767-3962252 (-) 1.35 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3294, rplQ) 3437637-3438021 (-) 2.69 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1904, yecR) 1986245-1986569 (+) -0.14 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1600, mdtJ) 1671159-1671525 (-) -0.66 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0675, nagD) 698796-699549 (-) -0.03 0.90 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3055, ygiM) 3199228-3199849 (+) 0.10 0.64 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3149, diaA) 3293830-3294421 (+) -0.22 0.25 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2866, xdhA) 2998366-3000625 (+) 0.03 0.93 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3061, ttdA) 3204484-3205396 (+) -0.26 0.19 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1913, uvrC) 1990897-1992730 (-) -0.86 0.48 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3920, yiiQ) 4109637-4110237 (-) -1.56 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2602, yfiL) 2739381-2739747 (+) -0.91 0.52 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0334, prpD) 350438-351890 (+) -2.75 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2365, dsdX) 2475868-2477206 (+) 2.83 0.04 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0636, rlmH) 667470-667938 (-) -5.95 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4366, bglJ) 4602182-4602860 (+) -1.27 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1632, rsxE) 1708851-1709547 (+) -0.34 0.32 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4313, fimE) 4540059-4540656 (+) 0.03 0.92 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3668, uhpB) 3846656-3848159 (-) 0.49 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2834, tas) 2969618-2970659 (+) -2.76 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0786, ybhL) 819106-819811 (+) -0.63 0.48 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2373, oxc) 2488277-2489972 (-) -1.06 0.57 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3406, greB) 3534833-3535310 (+) 1.91 0.09 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2358, oweS) 2470899-2471607 (-) -1.22 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0039, caiA) 39243-40386 (-) 3.98 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3119, tdcR) 3265401-3265620 (+) -0.40 0.14 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1221, narL) 1274401-1275052 (-) 0.01 0.84 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0038, caiB) 37897-39115 (-) 0.17 0.66 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3394, hofN) 3519454-3519994 (-) 0.01 0.98 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2244, yfaD) 2354925-2355825 (+) -0.24 0.43 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2560, pgpC) 2695936-2696572 (-) 0.27 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0621, dcuC) 653805-655191 (-) -2.48 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3316, rpsS) 3448269-3448548 (-) -0.41 0.10 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3618, yibB) 3790848-3791706 (-) 2.49 0.17 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4061, yjcC) 4273493-4275080 (+) 2.08 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0019, nhaA) 17488-18655 (+) 0.04 0.79 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3325, gspD) 3454398-3456351 (+) -0.12 0.82 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1522, yneF) 1608930-1609878 (-) 0.46 0.27 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0147, ligT) 161500-162031 (-) 0.30 0.03 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1377, ompN) 1433783-1434917 (-) -0.08 0.53 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3498, prlC) 3641162-3643205 (-) -0.74 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3365, nirB) 3492032-3494576 (+) -0.54 0.08 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0413, nrdR) 432225-432675 (+) 0.08 0.40 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0142, folK) 157252-157732 (-) -0.75 0.65 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2573, rpoE) 2707458-2708034 (-) -0.64 0.60 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1469, narU) 1540695-1542084 (-) -2.35 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2068, alkA) 2144715-2145564 (-) -0.48 0.48 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4202, rpsR) 4423861-4424089 (+) 2.70 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2906, visC) 3049136-3050339 (-) -2.96 0.29 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2339, yfcV) 2453104-2453668 (-) -1.46 0.29 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0416, nusB) 434360-434780 (+) -0.89 0.02 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1484, ddpD) 1556054-1557041 (-) -0.23 0.18 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2568, lepB) 2702356-2703331 (-) 0.35 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b4402, yjjY) 4638424-4638565 (+) -1.92 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3057, bacA) 3201331-3202153 (-) -1.27 0.49 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0787, ybhM) 820015-820729 (+) -0.45 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0167, glnD) 185977-188650 (-) 1.29 0.31 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1521, uxaB) 1607252-1608704 (-) 0.53 0.39 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0920, ycbC) 971844-972624 (-) 1.58 0.13 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3982, nusG) 4175765-4176311 (+) 0.11 0.50 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1101, ptsG) 1157091-1158525 (+) -0.79 0.47 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b0835, rimO) 875932-877258 (-) -5.54 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2121, yehP) 2205988-2207125 (+) -0.72 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3962, sthA) 4157412-4158813 (-) 0.41 0.56 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3065, rpsU) 3208802-3209018 (+) -0.64 0.37 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1130, phoP) 1188998-1189670 (-) 4.30 0.00 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b1287, yciW) 1347003-1348131 (-) -0.58 0.01 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2313, cvpA) 2428296-2428785 (-) -0.67 0.29 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b2521, sseA) 2650515-2651361 (+) 1.52 0.12 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
Diff Exp Data: Gene: (b3391, hofQ) 3517486-3518725 (-) 0.51 0.35 affyexp_delta-fnr/wt_glucose_NH4Cl_anaerobic,
...]
In [16]:
ome.query(NormalizedExpression).all()
Out[16]:
[Expression Data (#275): RNAseq_wt_fructose_NH4Cl_O2,
Expression Data (#276): RNAseq_wt_glucose_NH4Cl_O2,
Expression Data (#277): RNAseq_wt_glycerol_NH4Cl_O2,
Expression Data (#278): RNAseq_wt_glucose_NH4Cl_O2_dpd,
Expression Data (#279): RNAseq_wt_glucose_NH4Cl_O2_FeCl2,
Expression Data (#280): RNAseq_wt_glucose_cytidine_O2,
Expression Data (#281): RNAseq_wt_glucose_cytosine_O2,
Expression Data (#282): RNAseq_wt_glucose_glutamine_O2,
Expression Data (#283): RNAseq_Ar3_glycerol_NH4Cl_O2,
Expression Data (#284): RNAseq_delAr1_glycerol_NH4Cl_O2,
Expression Data (#285): RNAseq_delAr1delAr2_glycerol_NH4Cl_O2,
Expression Data (#286): RNAseq_delAr2_glycerol_NH4Cl_O2,
Expression Data (#287): RNAseq_delta-crp_fructose_NH4Cl_O2,
Expression Data (#288): RNAseq_delta-crp_glucose_NH4Cl_O2,
Expression Data (#289): RNAseq_delta-crp_glycerol_NH4Cl_O2,
Expression Data (#290): RNAseq_bw25113_acetate_NH4Cl_O2_thiamine,
Expression Data (#291): RNAseq_bw25113_fumarate_NH4Cl_O2_thiamine,
Expression Data (#292): RNAseq_bw25113_glucose_NH4Cl_O2_thiamine,
Expression Data (#293): RNAseq_bw25113_pyruvate_NH4Cl_O2_thiamine,
Expression Data (#294): RNAseq_delta-fur_glucose_NH4Cl_O2_dpd,
Expression Data (#295): RNAseq_delta-fur_glucose_NH4Cl_O2_FeCl2,
Expression Data (#296): affyexp_wt_fructose_NH4Cl_O2,
Expression Data (#297): affyexp_wt_glucose_NH4Cl_O2,
Expression Data (#298): affyexp_wt_glucose_NH4Cl_anaerobic,
Expression Data (#299): affyexp_wt_glucose_NH4Cl_NO3,
Expression Data (#300): affyexp_wt_acetate_NH4Cl_O2,
Expression Data (#301): affyexp_wt_glucose_leucine_O2,
Expression Data (#302): affyexp_wt_glucose_adenine_O2,
Expression Data (#303): affyexp_delta-crp_fructose_NH4Cl_O2,
Expression Data (#304): affyexp_delta-crp_glucose_NH4Cl_O2,
Expression Data (#305): affyexp_delta-arcA_glucose_NH4Cl_O2,
Expression Data (#306): affyexp_delta-arcA_glucose_NH4Cl_anaerobic,
Expression Data (#307): affyexp_delta-arcA_glucose_NH4Cl_NO3,
Expression Data (#308): affyexp_delta-arcAfnr_glucose_NH4Cl_O2,
Expression Data (#309): affyexp_delta-arcAfnr_glucose_NH4Cl_anaerobic,
Expression Data (#310): affyexp_delta-fnr_glucose_NH4Cl_O2,
Expression Data (#311): affyexp_delta-fnr_glucose_NH4Cl_anaerobic,
Expression Data (#312): affyexp_delta-fnr_glucose_NH4Cl_NO3,
Expression Data (#313): affyexp_delta-narL_glucose_NH4Cl_anaerobic,
Expression Data (#314): affyexp_delta-narL_glucose_NH4Cl_NO3,
Expression Data (#315): affyexp_delta-narLnarP_glucose_NH4Cl_anaerobic,
Expression Data (#316): affyexp_delta-narLnarP_glucose_NH4Cl_NO3,
Expression Data (#317): affyexp_delta-narP_glucose_NH4Cl_anaerobic,
Expression Data (#318): affyexp_delta-narP_glucose_NH4Cl_NO3,
Expression Data (#319): affyexp_delta-cra_glucose_NH4Cl_O2,
Expression Data (#320): affyexp_delta-cra_glucose_NH4Cl_anaerobic,
Expression Data (#321): affyexp_delta-cra_acetate_NH4Cl_O2,
Expression Data (#322): affyexp_delta-lrp_glucose_NH4Cl_O2,
Expression Data (#323): affyexp_delta-lrp_glucose_leucine_O2,
Expression Data (#324): affyexp_delta-purR_glucose_NH4Cl_O2,
Expression Data (#325): affyexp_delta-purR_glucose_adenine_O2]
In [29]:
session.query(ChIPPeakAnalysis).all()
Out[29]:
[ChIP Peak Analysis (#326, ChIPExo-Crp_wt_glucose_NH4Cl_O2_anti-crp_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#327, ChIPExo-RpoD_wt_glucose_cytidine_O2_anti-rpod_default_peaks): Environment: C:glucose, N:cytidine, e:O2 ,
ChIP Peak Analysis (#328, ChIPExo-Nac_Nac8myc_glucose_glutamine_O2_anti-myc_default_peaks): Environment: C:glucose, N:glutamine, e:O2 ,
ChIP Peak Analysis (#329, ChIPExo-Crp_wt_fructose_NH4Cl_O2_anti-crp_default_peaks): Environment: C:fructose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#330, ChIPExo-Nac_Nac8myc_glucose_NH4Cl_O2_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#331, ChIPExo-Crp_wt_glycerol_NH4Cl_O2_anti-crp_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#332, ChIPExo-NtrC_NtrC8myc_glucose_cytosine_O2_anti-myc_default_peaks): Environment: C:glucose, N:cytosine, e:O2 ,
ChIP Peak Analysis (#333, ChIPchip-Cra_Cra8myc_glucose_NH4Cl_O2_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#334, ChIPchip-Lrp_Lrp8myc_glucose_NH4Cl_O2_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#335, ChIPExo-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:anaerobic ,
ChIP Peak Analysis (#336, ChIPExo-RpoD_wt_fructose_NH4Cl_O2_anti-rpod_default_peaks): Environment: C:fructose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#337, ChIPchip-Crp_Crp8myc_fructose_NH4Cl_O2_anti-myc_default_peaks): Environment: C:fructose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#338, ChIPExo-RpoD_wt_glucose_NH4Cl_O2_anti-rpod_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#339, ChIPExo-RpoD_wt_glycerol_NH4Cl_O2_anti-rpod_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#340, ChIPExo-Crp_delAr2_glycerol_NH4Cl_O2_anti-crp_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#341, ChIPExo-Crp_Ar3_glycerol_NH4Cl_O2_anti-crp_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#342, ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_NO3_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:NO3 ,
ChIP Peak Analysis (#343, ChIPExo-RpoD_wt_glucose_glutamine_O2_anti-rpod_default_peaks): Environment: C:glucose, N:glutamine, e:O2 ,
ChIP Peak Analysis (#344, ChIPExo-Nac_Nac8myc_glucose_cytidine_O2_anti-myc_default_peaks): Environment: C:glucose, N:cytidine, e:O2 ,
ChIP Peak Analysis (#345, ChIPExo-RpoN_wt_glucose_NH4Cl_O2_anti-rpon_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#346, ChIPExo-RpoN_wt_glucose_glutamine_O2_anti-rpon_default_peaks): Environment: C:glucose, N:glutamine, e:O2 ,
ChIP Peak Analysis (#347, ChIPExo-Crp_delta-crp_glycerol_NH4Cl_O2_anti-crp_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#348, ChIPExo-Crp_delAr1_glycerol_NH4Cl_O2_anti-crp_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#349, ChIPExo-RpoN_wt_glucose_cytidine_O2_anti-rpon_default_peaks): Environment: C:glucose, N:cytidine, e:O2 ,
ChIP Peak Analysis (#350, ChIPExo-Fur_Fur8myc_glucose_NH4Cl_O2_anti-myc_FeCl2_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 FeCl2,
ChIP Peak Analysis (#351, ChIPExo-Fnr_Fnr8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:anaerobic ,
ChIP Peak Analysis (#352, ChIPchip-Fnr_Fnr8myc_glucose_NH4Cl_NO3_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:NO3 ,
ChIP Peak Analysis (#353, ChIPchip-Fnr_Fnr8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:anaerobic ,
ChIP Peak Analysis (#354, ChIPExo-NtrC_NtrC8myc_glucose_glutamine_O2_anti-myc_default_peaks): Environment: C:glucose, N:glutamine, e:O2 ,
ChIP Peak Analysis (#355, ChIPchip-Crp_Crp8myc_acetate_NH4Cl_O2_anti-myc_default_peaks): Environment: C:acetate, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#356, ChIPExo-RpoA_wt_glucose_NH4Cl_O2_anti-rpoA_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#357, ChIPchip-ArgR_ArgR8myc_glucose_NH4Cl_O2_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#358, ChIPExo-Nac_Nac8myc_glucose_cytosine_O2_anti-myc_default_peaks): Environment: C:glucose, N:cytosine, e:O2 ,
ChIP Peak Analysis (#359, ChIPExo-Fur_Fur8myc_glucose_NH4Cl_O2_anti-myc_dpd_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 dpd,
ChIP Peak Analysis (#360, ChIPExo-NtrC_NtrC8myc_glucose_NH4Cl_O2_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#361, ChIPExo-RpoS_wt_glucose_NH4Cl_O2_anti-rpos_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#362, ChIPExo-Crp_Crp8myc_fructose_NH4Cl_O2_anti-crp_default_peaks): Environment: C:fructose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#363, ChIPExo-RpoD_wt_glucose_cytosine_O2_anti-rpod_default_peaks): Environment: C:glucose, N:cytosine, e:O2 ,
ChIP Peak Analysis (#364, ChIPExo-Crp_wt_glycerol_NH4Cl_O2_anti-crp_rif_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 rif,
ChIP Peak Analysis (#365, ChIPExo-Crp_Crp8myc_glycerol_NH4Cl_O2_anti-crp_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#366, ChIPExo-NtrC_NtrC8myc_glucose_cytidine_O2_anti-myc_default_peaks): Environment: C:glucose, N:cytidine, e:O2 ,
ChIP Peak Analysis (#367, ChIPExo-RpoN_wt_glucose_NH4Cl_O2_anti-rpon_nitrogenstudy_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 nitrogenstudy,
ChIP Peak Analysis (#368, ChIPchip-Cra_Cra8myc_acetate_NH4Cl_O2_anti-myc_default_peaks): Environment: C:acetate, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#369, ChIPchip-PurR_PurR8myc_glucose_NH4Cl_O2_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#370, ChIPchip-Cra_Cra8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:anaerobic ,
ChIP Peak Analysis (#371, ChIPExo-Crp_Crp8myc_glucose_NH4Cl_O2_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#372, ChIPExo-RpoN_wt_glucose_cytosine_O2_anti-rpon_default_peaks): Environment: C:glucose, N:cytosine, e:O2 ,
ChIP Peak Analysis (#373, ChIPExo-Crp_delAr1delAr2_glycerol_NH4Cl_O2_anti-crp_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ,
ChIP Peak Analysis (#374, ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks): Environment: C:glucose, N:NH4Cl, e:anaerobic ,
ChIP Peak Analysis (#375, ChIPExo-RpoD_wt_glucose_NH4Cl_O2_anti-rpod_nitrogenstudy_default_peaks): Environment: C:glucose, N:NH4Cl, e:O2 nitrogenstudy,
ChIP Peak Analysis (#376, ChIPExo-Crp_Crp8myc_glycerol_NH4Cl_O2_anti-myc_default_peaks): Environment: C:glycerol, N:NH4Cl, e:O2 ]
In [37]:
ome.query(ChIPPeakData).filter(ChIPPeakData.data_set_id == 374).all()
Out[37]:
[ChIP Peak: 41672-42042 1.08 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 127591-127886 0.89 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 131050-131534 1.59 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 243101-243588 1.16 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 266183-266595 0.91 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 328312-328568 1.71 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 367665-368119 1.59 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 450609-451406 2.07 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 727995-728350 0.79 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 754077-754421 2.10 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 770021-770650 1.72 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 858147-858714 1.55 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 892525-892921 1.48 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 922323-922704 1.03 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 930001-930805 1.63 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 989730-990092 1.56 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1072983-1073675 1.68 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1077975-1078512 1.67 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1083941-1084375 1.35 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1118028-1118303 0.98 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1165380-1165680 1.77 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1194054-1194545 1.46 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1232190-1232570 0.65 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1249987-1250499 1.35 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1298413-1299076 1.30 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1358915-1359403 1.36 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1386679-1387029 1.07 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1395320-1395687 0.70 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1445042-1445305 1.21 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1451592-1452005 1.21 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1459130-1459501 1.28 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1485971-1486450 1.20 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1520896-1521354 0.81 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1560973-1561380 0.88 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1608400-1608966 0.81 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1675895-1676295 0.57 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1679650-1680230 0.70 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1684670-1684999 0.92 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1686174-1686720 0.80 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1829768-1830202 1.83 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1887539-1888068 1.42 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1976187-1976457 1.67 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1977345-1977770 1.58 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 1985962-1986292 0.85 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2238313-2238892 1.60 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2263946-2264425 0.85 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2275984-2276584 1.74 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2304729-2305071 0.93 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2310838-2311658 1.59 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2384876-2385184 1.18 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2403051-2403516 1.09 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2425639-2426189 1.41 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2458449-2458954 1.39 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2496254-2496562 0.83 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2511142-2511537 0.98 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2561261-2561603 0.78 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2642689-2643089 1.19 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2666748-2667127 1.18 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2716445-2716864 1.09 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2723571-2723871 1.03 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2786700-2787318 1.82 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 2940427-2940877 1.46 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3125934-3126446 1.59 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3216894-3217769 1.91 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3229661-3230011 1.42 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3237432-3237861 0.69 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3242566-3243092 0.65 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3382292-3382688 0.85 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3399849-3400191 1.21 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3523979-3524691 0.56 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3537746-3538155 0.90 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3559589-3560231 0.74 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3590033-3590716 1.19 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3663706-3664343 0.66 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3672094-3673090 1.98 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3705834-3706179 1.03 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3710035-3710416 1.64 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3737339-3737680 0.85 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3775015-3775340 0.95 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3839669-3839962 1.22 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 3891617-3891907 0.86 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4001098-4001478 1.47 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4002473-4002969 0.61 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4028846-4029205 1.13 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4083325-4083675 0.77 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4158618-4159035 1.25 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4194199-4194699 0.86 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4250254-4250644 1.50 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4285047-4285576 1.73 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4323036-4323627 0.77 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4346669-4347184 0.89 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4364657-4365207 0.72 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4427458-4427783 1.50 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4560493-4560947 1.57 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4569464-4569781 1.25 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4608882-4609307 0.63 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks,
ChIP Peak: 4638781-4638981 1.17 ChIPchip-ArcA_ArcA8myc_glucose_NH4Cl_anaerobic_anti-myc_default_peaks]
In [36]:
ome.query(cpge).filter(cpge.target == 'Fur').all()
Out[36]:
[TF: Fur, Gene: (entH, b0597), -5.63, 0.00 wt-->delta-fur Condition: glucose, NH4Cl, O2 Peak: 623848-624049 value:10749.40,
TF: Fur, Gene: (entH, b0597), -5.63, 0.00 wt-->delta-fur Condition: glucose, NH4Cl, O2 Peak: 623974-624175 value:7638.60]
In [33]:
ome.query(func.distinct(cpge.target)).all()
Out[33]:
[(u'Crp'), (u'Cra'), (u'Fur'), (u'Fnr')]
In [39]:
ome.query(func.distinct(cpg.target)).all()
---------------------------------------------------------------------------
KeyboardInterrupt Traceback (most recent call last)
<ipython-input-39-5facb2c34841> in <module>()
----> 1 ome.query(func.distinct(cpg.target)).all()
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/query.pyc in all(self)
2102
2103 """
-> 2104 return list(self)
2105
2106 @_generative(_no_clauseelement_condition)
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/query.pyc in __iter__(self)
2214 if self._autoflush and not self._populate_existing:
2215 self.session._autoflush()
-> 2216 return self._execute_and_instances(context)
2217
2218 def _connection_from_session(self, **kw):
/usr/local/lib/python2.7/site-packages/sqlalchemy/orm/query.pyc in _execute_and_instances(self, querycontext)
2229 close_with_result=True)
2230
-> 2231 result = conn.execute(querycontext.statement, self._params)
2232 return loading.instances(self, result, querycontext)
2233
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/base.pyc in execute(self, object, *multiparams, **params)
660 object,
661 multiparams,
--> 662 params)
663 else:
664 raise exc.InvalidRequestError(
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/base.pyc in _execute_clauseelement(self, elem, multiparams, params)
759 compiled_sql,
760 distilled_params,
--> 761 compiled_sql, distilled_params
762 )
763 if self._has_events:
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/base.pyc in _execute_context(self, dialect, constructor, statement, parameters, *args)
865 statement,
866 parameters,
--> 867 context)
868 except Exception, e:
869 self._handle_dbapi_exception(
/usr/local/lib/python2.7/site-packages/sqlalchemy/engine/default.pyc in do_execute(self, cursor, statement, parameters, context)
322
323 def do_execute(self, cursor, statement, parameters, context=None):
--> 324 cursor.execute(statement, parameters)
325
326 def do_execute_no_params(self, cursor, statement, context=None):
<string> in __new__(_cls, name, type_code, display_size, internal_size, precision, scale, null_ok)
KeyboardInterrupt:
In [ ]:
from IPython.display import display
from IPython.html import widgets as W
from IPython.utils import traitlets as T
class HeatmapWidget(W.DOMWidget):
_view_name = T.Unicode('HeatmapView', sync=True)
heatmap_data = T.List(sync=True)
row_labels = T.List(sync=True)
col_labels = T.List(sync=True)
hcrow = T.List(sync=True)
hccol = T.List(sync=True)
minval = T.Float(sync=True)
maxval = T.Float(sync=True)
html_style = T.Unicode(sync=True)
In [ ]:
%%javascript
require.config({paths: {d3: "https://mpld3.github.io/js/d3.v3.min"}});
require(["widgets/js/widget", "d3"], function(WidgetManager, d3){
var HeatmapView = IPython.DOMWidgetView.extend({
render: function(){
this.$el.append(this.model.get("html_style"));
this.update();
},
update: function(){
var margin = { top: 75, right: 10, bottom: 150, left: 400 },
cellSize=18,
// - margin.top - margin.bottom,
//gridSize = Math.floor(width / 24),
legendElementWidth = cellSize*2.5,
colorBuckets = 21,
colors = ['#005824','#1A693B','#347B53','#4F8D6B','#699F83','#83B09B','#9EC2B3','#B8D4CB','#D2E6E3','#EDF8FB','#FFFFFF','#F1EEF6','#E6D3E1','#DBB9CD','#D19EB9','#C684A4','#BB6990','#B14F7C','#A63467','#9B1A53','#91003F'];
var rowLabel = this.model.get("row_labels");
var colLabel = this.model.get("col_labels");
var data = this.model.get("heatmap_data");
var hcrow = this.model.get("hcrow");
var hccol = this.model.get("hccol");
var col_number = colLabel.length,
row_number = rowLabel.length;
var width = cellSize*col_number, // - margin.left - margin.right,
height = cellSize*row_number;
var maxval = JSON.parse(this.model.get("maxval"));
var minval = JSON.parse(this.model.get("minval"));
var colorScale = d3.scale.quantile()
.domain([ minval , 0, maxval])
.range(colors);
this.svg = d3.select(this.el).append("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
var svg = this.svg;
var rowSortOrder=false;
var colSortOrder=false;
var rowLabels = svg.append("g")
.selectAll(".rowLabelg")
.data(rowLabel)
.enter()
.append("text")
.text(function (d) { return d; })
.attr("x", 0)
.attr("y", function (d, i) { return hcrow.indexOf(i+1) * cellSize; })
.style("text-anchor", "end")
.attr("transform", "translate(-25," + cellSize / 1.5 + ")")
.attr("class", function (d,i) { return "rowLabel mono r"+i;} )
.on("mouseover", function(d) {d3.select(this).classed("text-hover",true);})
.on("mouseout" , function(d) {d3.select(this).classed("text-hover",false);})
.on("click", function(d,i) {rowSortOrder=!rowSortOrder; sortbylabel("r",i,rowSortOrder); this.$('#order').property("selectedIndex", 4).node().focus();;});
var colLabels = svg.append("g")
.selectAll(".colLabelg")
.data(colLabel)
.enter()
.append("text")
.text(function (d) { return d; })
.attr("x", 0)
.attr("y", function (d, i) { return hccol.indexOf(i+1) * cellSize; })
.style("text-anchor", "left")
.attr("transform", "translate("+cellSize/2 + ",-25) rotate (-90)")
.attr("class", function (d,i) { return "colLabel mono c"+i;} )
.on("mouseover", function(d) {d3.select(this).classed("text-hover",true);})
.on("mouseout" , function(d) {d3.select(this).classed("text-hover",false);})
.on("click", function(d,i) {colSortOrder=!colSortOrder; sortbylabel("c",i,colSortOrder); this.$('#order').property("selectedIndex", 4).node().focus();;});
var heatMap = svg.append("g").attr("class","g3")
.selectAll(".cellg")
.data(data,function(d){return d.row+":"+d.col;})
.enter()
.append("rect")
.attr("x", function(d) { return hccol.indexOf(d.col) * cellSize; })
.attr("y", function(d) { return hcrow.indexOf(d.row) * cellSize; })
.attr("class", function(d){return "cell cell-border cr"+(d.row-1)+" cc"+(d.col-1);})
.attr("width", cellSize)
.attr("height", cellSize)
.style("fill", function(d) { return colorScale(d.value); })
/* .on("click", function(d) {
var rowtext=d3.select(".r"+(d.row-1));
if(rowtext.classed("text-selected")==false){
rowtext.classed("text-selected",true);
}else{
rowtext.classed("text-selected",false);
}
})*/
.on("mouseover", function(d){
//highlight text
d3.select(this).classed("cell-hover",true);
d3.selectAll(".rowLabel").classed("text-highlight",function(r,ri){ return ri==(d.row-1);});
d3.selectAll(".colLabel").classed("text-highlight",function(c,ci){ return ci==(d.col-1);});
//Update the tooltip position and value
d3.select("#tooltip")
.style("left", (d3.event.pageX+10) + "px")
.style("top", (d3.event.pageY-10) + "px")
.select("#value")
.text(rowLabel[d.row-1]+","+colLabel[d.col-1]+"\ndata:"+d.value);
//Show the tooltip
d3.select("#tooltip").classed("hidden", false);
})
.on("mouseout", function(){
d3.select(this).classed("cell-hover",false);
d3.selectAll(".rowLabel").classed("text-highlight",false);
d3.selectAll(".colLabel").classed("text-highlight",false);
d3.select("#tooltip").classed("hidden", true);
})
;
var legend = svg.selectAll(".legend")
.data([-10,-9,-8,-7,-6,-5,-4,-3,-2,-1,0,1,2,3,4,5,6,7,8,9,10])
.enter().append("g")
.attr("class", "legend");
console.log(height+(cellSize*2));
legend.append("rect")
.attr("x", function(d, i) { return legendElementWidth * i; })
.attr("y", height+(cellSize*2))
.attr("width", legendElementWidth)
.attr("height", cellSize)
.style("fill", function(d, i) { return colors[i]; });
legend.append("text")
.attr("class", "mono")
.text(function(d) { return d; })
.attr("width", legendElementWidth)
.attr("x", function(d, i) { return legendElementWidth * i; })
.attr("y", height + (cellSize*4));
// Change ordering of cells
function sortbylabel(rORc,i,sortOrder){
var t = svg.transition().duration(3000);
var log2r=[];
var sorted; // sorted is zero-based index
d3.selectAll(".c"+rORc+i)
.filter(function(ce){
log2r.push(ce.value);
})
;
if(rORc=="r"){ // sort log2ratio of a gene
sorted=d3.range(col_number).sort(function(a,b){ if(sortOrder){ return log2r[b]-log2r[a];}else{ return log2r[a]-log2r[b];}});
t.selectAll(".cell")
.attr("x", function(d) { return sorted.indexOf(d.col-1) * cellSize; })
;
t.selectAll(".colLabel")
.attr("y", function (d, i) { return sorted.indexOf(i) * cellSize; })
;
}else{ // sort log2ratio of a contrast
sorted=d3.range(row_number).sort(function(a,b){if(sortOrder){ return log2r[b]-log2r[a];}else{ return log2r[a]-log2r[b];}});
t.selectAll(".cell")
.attr("y", function(d) { return sorted.indexOf(d.row-1) * cellSize; })
;
t.selectAll(".rowLabel")
.attr("y", function (d, i) { return sorted.indexOf(i) * cellSize; })
;
}
}
//d3.select("#order").on("change",function(){
this.$('#order').on("change",function(){
order(this.value);
});
function order(value){
if(value=="hclust"){
var t = svg.transition().duration(3000);
t.selectAll(".cell")
.attr("x", function(d) { return hccol.indexOf(d.col) * cellSize; })
.attr("y", function(d) { return hcrow.indexOf(d.row) * cellSize; })
;
t.selectAll(".rowLabel")
.attr("y", function (d, i) { return hcrow.indexOf(i+1) * cellSize; })
;
t.selectAll(".colLabel")
.attr("y", function (d, i) { return hccol.indexOf(i+1) * cellSize; })
;
}else if (value=="probecontrast"){
var t = svg.transition().duration(3000);
t.selectAll(".cell")
.attr("x", function(d) { return (d.col - 1) * cellSize; })
.attr("y", function(d) { return (d.row - 1) * cellSize; })
;
t.selectAll(".rowLabel")
.attr("y", function (d, i) { return i * cellSize; })
;
t.selectAll(".colLabel")
.attr("y", function (d, i) { return i * cellSize; })
;
}else if (value=="probe"){
var t = svg.transition().duration(3000);
t.selectAll(".cell")
.attr("y", function(d) { return (d.row - 1) * cellSize; })
;
t.selectAll(".rowLabel")
.attr("y", function (d, i) { return i * cellSize; })
;
}else if (value=="contrast"){
var t = svg.transition().duration(3000);
t.selectAll(".cell")
.attr("x", function(d) { return (d.col - 1) * cellSize; })
;
t.selectAll(".colLabel")
.attr("y", function (d, i) { return i * cellSize; })
;
}
}
//
var sa=d3.select(".g3")
.on("mousedown", function() {
if( !d3.event.altKey) {
d3.selectAll(".cell-selected").classed("cell-selected",false);
d3.selectAll(".rowLabel").classed("text-selected",false);
d3.selectAll(".colLabel").classed("text-selected",false);
}
var p = d3.mouse(this);
sa.append("rect")
.attr({
rx : 0,
ry : 0,
class : "selection",
x : p[0],
y : p[1],
width : 1,
height : 1
})
})
.on("mousemove", function() {
var s = sa.select("rect.selection");
if(!s.empty()) {
var p = d3.mouse(this),
d = {
x : parseInt(s.attr("x"), 10),
y : parseInt(s.attr("y"), 10),
width : parseInt(s.attr("width"), 10),
height : parseInt(s.attr("height"), 10)
},
move = {
x : p[0] - d.x,
y : p[1] - d.y
}
;
if(move.x < 1 || (move.x*2<d.width)) {
d.x = p[0];
d.width -= move.x;
} else {
d.width = move.x;
}
if(move.y < 1 || (move.y*2<d.height)) {
d.y = p[1];
d.height -= move.y;
} else {
d.height = move.y;
}
s.attr(d);
// deselect all temporary selected state objects
d3.selectAll('.cell-selection.cell-selected').classed("cell-selected", false);
d3.selectAll(".text-selection.text-selected").classed("text-selected",false);
d3.selectAll('.cell').filter(function(cell_d, i) {
if(
!d3.select(this).classed("cell-selected") &&
// inner circle inside selection frame
(this.x.baseVal.value)+cellSize >= d.x && (this.x.baseVal.value)<=d.x+d.width &&
(this.y.baseVal.value)+cellSize >= d.y && (this.y.baseVal.value)<=d.y+d.height
) {
d3.select(this)
.classed("cell-selection", true)
.classed("cell-selected", true);
d3.select(".r"+(cell_d.row-1))
.classed("text-selection",true)
.classed("text-selected",true);
d3.select(".c"+(cell_d.col-1))
.classed("text-selection",true)
.classed("text-selected",true);
}
});
}
})
.on("mouseup", function() {
// remove selection frame
sa.selectAll("rect.selection").remove();
// remove temporary selection marker class
d3.selectAll('.cell-selection').classed("cell-selection", false);
d3.selectAll(".text-selection").classed("text-selection",false);
})
.on("mouseout", function() {
if(d3.event.relatedTarget.tagName=='html') {
// remove selection frame
sa.selectAll("rect.selection").remove();
// remove temporary selection marker class
d3.selectAll('.cell-selection').classed("cell-selection", false);
d3.selectAll(".rowLabel").classed("text-selected",false);
d3.selectAll(".colLabel").classed("text-selected",false);
}
});
}
});
WidgetManager.register_widget_view("HeatmapView", HeatmapView);
});
In [ ]:
html_style = """
<style>
/* disable text selection */
svg *::selection {
background : transparent;
}
svg *::-moz-selection {
background:transparent;
}
svg *::-webkit-selection {
background:transparent;
}
rect.selection {
stroke : #333;
stroke-dasharray: 4px;
stroke-opacity : 0.5;
fill : transparent;
}
rect.cell-border {
stroke: #eee;
stroke-width:0.3px;
}
rect.cell-selected {
stroke: rgb(51,102,153);
stroke-width:0.5px;
}
rect.cell-hover {
stroke: #F00;
stroke-width:0.3px;
}
text.mono {
font-size: 10pt;
font-family: Consolas, courier;
fill: #aaa;
}
text.text-selected {
fill: #000;
}
text.text-highlight {
fill: #c00;
}
text.text-hover {
fill: #00C;
}
#tooltip {
position: fixed;
width: 200px;
height: auto;
padding: 10px;
background-color: white;
-webkit-border-radius: 10px;
-moz-border-radius: 10px;
border-radius: 10px;
-webkit-box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4);
-moz-box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4);
box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4);
pointer-events: none;
}
#tooltip.hidden {
display: none;
}
#tooltip p {
margin: 0;
font-family: sans-serif;
font-size: 12px;
line-height: 20px;
}
</style>
<div id="tooltip" class="hidden">
<p><span id="value"></p>
</div>
<select id="order">
<option value="hclust">by cluster</option>
<option value="probecontrast">by probe name and contrast name</option>
<option value="probe">by probe name</option>
<option value="contrast">by contrast name</option>
<option value="custom">by log2 ratio</option>
</select>
</select>
<div id="chart" style='overflow:auto; width:960px; height:auto;'></div>
"""
In [ ]:
ome.query(GeneGroup).all()
In [ ]:
def gene_heatmap(gene_list, analysis_type=GeneExpressionData, dataset_type='%',
strain1=ome.query(Strain).all(), strain2=None,
environments1=ome.query(InVivoEnvironment).all(), environments2=None):
if analysis_type == GeneExpressionData:
genes_data = {gene: ome.query(analysis_type).\
filter(and_(analysis_type.gene_id == gene.id,
analysis_type.dataset_type.ilike(dataset_type))).all() for gene in gene_list}
row_labels = ['_'.join([x.dataset_type,x.strain,x.carbon_source,x.nitrogen_source,x.electron_acceptor]) for x in genes_data.itervalues().next()]
elif analysis_type == DifferentialGeneExpressionData:
genes_data = {gene: ome.query(analysis_type).\
filter(and_(analysis_type.gene_id == gene.id,
analysis_type.strain1.in_([x.name for x in strain1]),
analysis_type.strain2.in_([x.name for x in strain2]),
analysis_type.environment_id_1.in_([x.id for x in environments1]),
analysis_type.environment_id_2.in_([x.id for x in environments2]))).all() for gene in gene_list}
row_labels = ['_'.join([x.dataset_type,x.strain1,x.carbon_source1,x.nitrogen_source1,x.electron_acceptor1]) for x in genes_data.itervalues().next()]
elif analysis_type == ChIPPeakGeneExpression:
genes_data = {gene: ome.query(analysis_type).\
filter(and_(analysis_type.gene_id == gene.id,
analysis_type.strain1.in_([x.name for x in strain1]),
analysis_type.strain2.in_([x.name for x in strain2]),
analysis_type.environment_id.in_([x.id for x in environments1]))).all() for gene in gene_list}
genes_data = dict((k, v) for k, v in genes_data.iteritems() if v)
row_labels = ['_'.join([x.dataset_type,x.strain1,x.carbon_source,x.nitrogen_source,x.electron_acceptor]) for x in genes_data.itervalues().next()]
col_labels = [x.name for x in genes_data.keys()]
heatmap_data = []
for i,gene in enumerate(genes_data):
for j,data in enumerate(genes_data[gene]):
if data.value <= 0: value = 1.
elif data.value > 1e6: value = 1e6
else: value = data.value
heatmap_data.append({"row": j+1, "col": i+1, "value": np.log(value)})
hcrow = range(len(row_labels))
hccol = range(len(col_labels))
np.random.shuffle(hcrow)
np.random.shuffle(hccol)
return hcrow,hccol,row_labels,col_labels,heatmap_data
#return {'hcrow': hcrow, 'hccol': hccol, 'row_labels':row_labels,
# 'col_labels':col_labels,
# 'heatmap_data':heatmap_data,
# 'maxval' : max([x['value'] for x in heatmap_data]),
# 'minval' : min([x['value'] for x in heatmap_data])}
In [ ]:
gene_list = ome.query(GeneGroup).filter(GeneGroup.name.ilike('Peptid%')).first().genes
analysis_type = GeneExpressionData
dataset_type = '%'
all_data = ome.query(analysis_type).filter(and_(analysis_type.gene_name.in_(genes_data.index),
analysis_type.dataset_type.ilike(dataset_type))).all()
datasets = set(['_'.join([x.dataset_type,x.strain,x.carbon_source,x.nitrogen_source,x.electron_acceptor]) for x in all_data])
genes_data = pd.DataFrame(index=[g.name for g in gene_list], columns=datasets)
for x in all_data:
genes_data.ix[x.gene_name]['_'.join([x.dataset_type,x.strain,x.carbon_source,x.nitrogen_source,x.electron_acceptor])] = x.value
heatmap_data = []
for i,g in enumerate(genes_data.index):
for j,c in enumerate(genes_data.columns):
heatmap_data.append({"row": j+1, "col": i+1, "value": np.log(genes_data.ix[g][c])})
In [11]:
catabolic_genes = ome.query(GeneGroup).filter(GeneGroup.name.ilike('crp_cata%')).first().genes
hcrow,hccol,row_labels,col_labels,heatmap_data = gene_heatmap(catabolic_genes,
analysis_type=ChIPPeakGeneExpression,
strain2=ome.query(Strain).all(),
environments2=ome.query(InVivoEnvironment).all())
##x = gene_heatmap(catabolic_genes, analysis_type=ChIPPeakGeneExpression,
# strain2=ome.query(Strain).all(),
# environments2=ome.query(InVivoEnvironment).all())
In [12]:
heatmap_data
Out[12]:
[{'col': 1, 'row': 1, 'value': 0.49122069692578785},
{'col': 1, 'row': 2, 'value': 0.034816799375362424},
{'col': 1, 'row': 3, 'value': 0.60294344067060102},
{'col': 1, 'row': 4, 'value': 0.94954367324764488},
{'col': 1, 'row': 5, 'value': -0.39507576472420974},
{'col': 1, 'row': 6, 'value': 0.52890912715626048},
{'col': 2, 'row': 1, 'value': 0.0},
{'col': 2, 'row': 2, 'value': 0.0},
{'col': 2, 'row': 3, 'value': -1.4186935935665683},
{'col': 2, 'row': 4, 'value': -1.4186935935665683},
{'col': 2, 'row': 5, 'value': -0.10545274213277916},
{'col': 2, 'row': 6, 'value': -0.10545274213277916},
{'col': 2, 'row': 7, 'value': 0.0},
{'col': 2, 'row': 8, 'value': 0.0},
{'col': 2, 'row': 9, 'value': 0.0},
{'col': 2, 'row': 10, 'value': 0.0},
{'col': 2, 'row': 11, 'value': -1.4181318375686813},
{'col': 3, 'row': 1, 'value': 1.851693656671092},
{'col': 3, 'row': 2, 'value': 1.7005045557052119},
{'col': 3, 'row': 3, 'value': 1.660153840177603},
{'col': 3, 'row': 4, 'value': 1.2332742919115054},
{'col': 3, 'row': 5, 'value': 1.4056949468238653},
{'col': 3, 'row': 6, 'value': 1.3215798244925019},
{'col': 4, 'row': 1, 'value': 0.0},
{'col': 4, 'row': 2, 'value': 0.0},
{'col': 4, 'row': 3, 'value': 0.0},
{'col': 4, 'row': 4, 'value': 0.0},
{'col': 4, 'row': 5, 'value': 0.0},
{'col': 4, 'row': 6, 'value': 0.0},
{'col': 4, 'row': 7, 'value': 0.0},
{'col': 4, 'row': 8, 'value': 0.0},
{'col': 4, 'row': 9, 'value': 0.0},
{'col': 4, 'row': 10, 'value': 0.0},
{'col': 4, 'row': 11, 'value': 0.0},
{'col': 4, 'row': 12, 'value': 0.0},
{'col': 4, 'row': 13, 'value': 0.0},
{'col': 4, 'row': 14, 'value': 0.0},
{'col': 4, 'row': 15, 'value': -0.84741553397713565},
{'col': 4, 'row': 16, 'value': -0.84741553397713565},
{'col': 4, 'row': 17, 'value': -0.84741553397713565},
{'col': 4, 'row': 18, 'value': -0.84741553397713565},
{'col': 4, 'row': 19, 'value': -0.84741553397713565},
{'col': 4, 'row': 20, 'value': -0.84741553397713565},
{'col': 4, 'row': 21, 'value': -0.84741553397713565},
{'col': 4, 'row': 22, 'value': 0.0},
{'col': 4, 'row': 23, 'value': 0.0},
{'col': 4, 'row': 24, 'value': 0.0},
{'col': 4, 'row': 25, 'value': 0.0},
{'col': 4, 'row': 26, 'value': 0.0},
{'col': 4, 'row': 27, 'value': 0.0},
{'col': 4, 'row': 28, 'value': 0.0},
{'col': 4, 'row': 29, 'value': 0.0},
{'col': 4, 'row': 30, 'value': 0.0},
{'col': 4, 'row': 31, 'value': 0.0},
{'col': 4, 'row': 32, 'value': 0.0},
{'col': 4, 'row': 33, 'value': 0.0},
{'col': 4, 'row': 34, 'value': 0.0},
{'col': 4, 'row': 35, 'value': 0.0},
{'col': 4, 'row': 36, 'value': -1.1068309696926413},
{'col': 4, 'row': 37, 'value': -1.1068309696926413},
{'col': 5, 'row': 1, 'value': 1.7373736787014633},
{'col': 5, 'row': 2, 'value': 1.6489220524259467},
{'col': 5, 'row': 3, 'value': 1.5767783477938107},
{'col': 5, 'row': 4, 'value': 1.1267947396419009},
{'col': 5, 'row': 5, 'value': 1.3756403077120789},
{'col': 5, 'row': 6, 'value': 1.3995288970232906},
{'col': 6, 'row': 1, 'value': 0.0},
{'col': 6, 'row': 2, 'value': 0.0},
{'col': 6, 'row': 3, 'value': 0.0},
{'col': 6, 'row': 4, 'value': 0.0},
{'col': 6, 'row': 5, 'value': -0.52689403194505524},
{'col': 6, 'row': 6, 'value': -0.52689403194505524},
{'col': 6, 'row': 7, 'value': -0.52689403194505524},
{'col': 6, 'row': 8, 'value': -0.52689403194505524},
{'col': 6, 'row': 9, 'value': -1.2322145409459753},
{'col': 6, 'row': 10, 'value': -1.2322145409459753},
{'col': 6, 'row': 11, 'value': -1.2322145409459753},
{'col': 6, 'row': 12, 'value': -1.2322145409459753},
{'col': 6, 'row': 13, 'value': -0.95302992654284968},
{'col': 6, 'row': 14, 'value': -0.95302992654284968},
{'col': 6, 'row': 15, 'value': -0.95302992654284968},
{'col': 6, 'row': 16, 'value': -0.95302992654284968},
{'col': 7, 'row': 1, 'value': 1.9632756352648482},
{'col': 7, 'row': 2, 'value': 1.9632756352648482},
{'col': 7, 'row': 3, 'value': 1.9632756352648482},
{'col': 7, 'row': 4, 'value': 1.9632756352648482},
{'col': 7, 'row': 5, 'value': 1.9632756352648482},
{'col': 7, 'row': 6, 'value': 1.9632756352648482},
{'col': 7, 'row': 7, 'value': 1.5083482636269201},
{'col': 7, 'row': 8, 'value': 1.5083482636269201},
{'col': 7, 'row': 9, 'value': 1.5083482636269201},
{'col': 7, 'row': 10, 'value': 1.5083482636269201},
{'col': 7, 'row': 11, 'value': 1.5083482636269201},
{'col': 7, 'row': 12, 'value': 1.5083482636269201},
{'col': 7, 'row': 13, 'value': 1.834981780681324},
{'col': 7, 'row': 14, 'value': 1.834981780681324},
{'col': 7, 'row': 15, 'value': 1.834981780681324},
{'col': 7, 'row': 16, 'value': 1.834981780681324},
{'col': 7, 'row': 17, 'value': 1.834981780681324},
{'col': 7, 'row': 18, 'value': 1.834981780681324},
{'col': 7, 'row': 19, 'value': 2.0949469589842744},
{'col': 7, 'row': 20, 'value': 2.0949469589842744},
{'col': 7, 'row': 21, 'value': 2.0949469589842744},
{'col': 7, 'row': 22, 'value': 2.0949469589842744},
{'col': 7, 'row': 23, 'value': 2.0949469589842744},
{'col': 7, 'row': 24, 'value': 2.0949469589842744},
{'col': 7, 'row': 25, 'value': 1.4320083702005713},
{'col': 7, 'row': 26, 'value': 1.4320083702005713},
{'col': 7, 'row': 27, 'value': 1.4320083702005713},
{'col': 7, 'row': 28, 'value': 1.4320083702005713},
{'col': 7, 'row': 29, 'value': 1.4320083702005713},
{'col': 7, 'row': 30, 'value': 1.4320083702005713},
{'col': 7, 'row': 31, 'value': 1.6868229377503061},
{'col': 7, 'row': 32, 'value': 1.6868229377503061},
{'col': 7, 'row': 33, 'value': 1.6868229377503061},
{'col': 8, 'row': 1, 'value': 0.0},
{'col': 8, 'row': 2, 'value': -1.2577041560807669},
{'col': 8, 'row': 3, 'value': 0.0},
{'col': 9, 'row': 1, 'value': 0.0},
{'col': 10, 'row': 1, 'value': 0.0},
{'col': 10, 'row': 2, 'value': 0.0},
{'col': 10, 'row': 3, 'value': 0.0},
{'col': 10, 'row': 4, 'value': 0.0},
{'col': 10, 'row': 5, 'value': 0.0},
{'col': 10, 'row': 6, 'value': 0.0},
{'col': 10, 'row': 7, 'value': 0.0},
{'col': 10, 'row': 8, 'value': 0.0},
{'col': 11, 'row': 1, 'value': 0.0},
{'col': 11, 'row': 2, 'value': 0.0},
{'col': 11, 'row': 3, 'value': 0.0},
{'col': 11, 'row': 4, 'value': 0.0},
{'col': 11, 'row': 5, 'value': 0.0},
{'col': 11, 'row': 6, 'value': 0.0},
{'col': 11, 'row': 7, 'value': 0.0},
{'col': 11, 'row': 8, 'value': 0.0},
{'col': 11, 'row': 9, 'value': 0.0},
{'col': 11, 'row': 10, 'value': 0.0},
{'col': 11, 'row': 11, 'value': 0.0},
{'col': 11, 'row': 12, 'value': 0.0},
{'col': 11, 'row': 13, 'value': 0.0},
{'col': 11, 'row': 14, 'value': 0.0},
{'col': 11, 'row': 15, 'value': 0.0},
{'col': 11, 'row': 16, 'value': 0.0},
{'col': 11, 'row': 17, 'value': 0.0},
{'col': 11, 'row': 18, 'value': 0.0},
{'col': 11, 'row': 19, 'value': 0.0},
{'col': 11, 'row': 20, 'value': 0.0},
{'col': 11, 'row': 21, 'value': 0.0},
{'col': 11, 'row': 22, 'value': 0.0},
{'col': 11, 'row': 23, 'value': 0.0},
{'col': 11, 'row': 24, 'value': 0.0},
{'col': 11, 'row': 25, 'value': 0.0},
{'col': 11, 'row': 26, 'value': 0.0},
{'col': 11, 'row': 27, 'value': 0.0},
{'col': 11, 'row': 28, 'value': 0.0},
{'col': 11, 'row': 29, 'value': 0.0},
{'col': 11, 'row': 30, 'value': 0.0},
{'col': 11, 'row': 31, 'value': 0.0},
{'col': 11, 'row': 32, 'value': 0.0},
{'col': 11, 'row': 33, 'value': 0.0},
{'col': 11, 'row': 34, 'value': 0.0},
{'col': 11, 'row': 35, 'value': 0.0},
{'col': 11, 'row': 36, 'value': 0.0},
{'col': 11, 'row': 37, 'value': 0.0},
{'col': 11, 'row': 38, 'value': 0.0},
{'col': 11, 'row': 39, 'value': 0.0},
{'col': 11, 'row': 40, 'value': 0.0},
{'col': 11, 'row': 41, 'value': 0.0},
{'col': 11, 'row': 42, 'value': 0.0},
{'col': 11, 'row': 43, 'value': 0.0},
{'col': 12, 'row': 1, 'value': -0.011732558077035616},
{'col': 12, 'row': 2, 'value': 0.50888173563909966},
{'col': 12, 'row': 3, 'value': 0.17709123581436523},
{'col': 12, 'row': 4, 'value': 0.1680958495299725},
{'col': 12, 'row': 5, 'value': 0.48827935612844381},
{'col': 13, 'row': 1, 'value': 0.0},
{'col': 13, 'row': 2, 'value': 0.0},
{'col': 13, 'row': 3, 'value': 0.0},
{'col': 13, 'row': 4, 'value': 0.0},
{'col': 13, 'row': 5, 'value': 0.0},
{'col': 13, 'row': 6, 'value': 0.0},
{'col': 13, 'row': 7, 'value': 0.0},
{'col': 13, 'row': 8, 'value': 0.0},
{'col': 13, 'row': 9, 'value': 0.0},
{'col': 13, 'row': 10, 'value': 0.0},
{'col': 13, 'row': 11, 'value': 0.0},
{'col': 13, 'row': 12, 'value': 0.0},
{'col': 13, 'row': 13, 'value': 0.0},
{'col': 13, 'row': 14, 'value': 0.0},
{'col': 13, 'row': 15, 'value': 0.0},
{'col': 14, 'row': 1, 'value': 2.1769345646203928},
{'col': 14, 'row': 2, 'value': 2.1769345646203928},
{'col': 14, 'row': 3, 'value': 2.1769345646203928},
{'col': 14, 'row': 4, 'value': 2.1769345646203928},
{'col': 14, 'row': 5, 'value': 2.1769345646203928},
{'col': 14, 'row': 6, 'value': 2.1769345646203928},
{'col': 14, 'row': 7, 'value': 1.9063165663948365},
{'col': 14, 'row': 8, 'value': 1.9063165663948365},
{'col': 14, 'row': 9, 'value': 1.9063165663948365},
{'col': 14, 'row': 10, 'value': 1.9063165663948365},
{'col': 14, 'row': 11, 'value': 1.9063165663948365},
{'col': 14, 'row': 12, 'value': 1.9063165663948365},
{'col': 14, 'row': 13, 'value': 2.0945641169499449},
{'col': 14, 'row': 14, 'value': 2.0945641169499449},
{'col': 14, 'row': 15, 'value': 2.0945641169499449},
{'col': 14, 'row': 16, 'value': 2.0945641169499449},
{'col': 14, 'row': 17, 'value': 2.0945641169499449},
{'col': 14, 'row': 18, 'value': 2.0945641169499449},
{'col': 14, 'row': 19, 'value': 2.2566709889957122},
{'col': 14, 'row': 20, 'value': 2.2566709889957122},
{'col': 14, 'row': 21, 'value': 2.2566709889957122},
{'col': 14, 'row': 22, 'value': 2.2566709889957122},
{'col': 14, 'row': 23, 'value': 2.2566709889957122},
{'col': 14, 'row': 24, 'value': 2.2566709889957122},
{'col': 14, 'row': 25, 'value': 1.7755233742874674},
{'col': 14, 'row': 26, 'value': 1.7755233742874674},
{'col': 14, 'row': 27, 'value': 1.7755233742874674},
{'col': 14, 'row': 28, 'value': 1.7755233742874674},
{'col': 14, 'row': 29, 'value': 1.7755233742874674},
{'col': 14, 'row': 30, 'value': 1.7755233742874674},
{'col': 14, 'row': 31, 'value': 1.9545073725093323},
{'col': 14, 'row': 32, 'value': 1.9545073725093323},
{'col': 14, 'row': 33, 'value': 1.9545073725093323},
{'col': 15, 'row': 1, 'value': 0.38229200714171241},
{'col': 15, 'row': 2, 'value': 0.58591268788128137},
{'col': 15, 'row': 3, 'value': -0.35363813115449155},
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{'col': 16, 'row': 1, 'value': -0.28832094315288109},
{'col': 16, 'row': 2, 'value': -0.15099616055905943},
{'col': 16, 'row': 3, 'value': -0.071648537505625512},
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{'col': 16, 'row': 6, 'value': 0.3599934316625587},
{'col': 17, 'row': 1, 'value': 0.063143798964624243},
{'col': 17, 'row': 2, 'value': -0.21257212625127564},
{'col': 17, 'row': 3, 'value': 0.95279236706783188},
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{'col': 18, 'row': 1, 'value': 0.0},
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{'col': 19, 'row': 1, 'value': 1.8449257584651275},
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{'col': 19, 'row': 7, 'value': 1.1770999417168508},
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{'col': 19, 'row': 18, 'value': 1.6701171209959458},
{'col': 19, 'row': 19, 'value': 2.0151176641713393},
{'col': 19, 'row': 20, 'value': 2.0151176641713393},
{'col': 19, 'row': 21, 'value': 2.0151176641713393},
{'col': 19, 'row': 22, 'value': 2.0151176641713393},
{'col': 19, 'row': 23, 'value': 2.0151176641713393},
{'col': 19, 'row': 24, 'value': 2.0151176641713393},
{'col': 19, 'row': 25, 'value': 1.1882945401393357},
{'col': 19, 'row': 26, 'value': 1.1882945401393357},
{'col': 19, 'row': 27, 'value': 1.1882945401393357},
{'col': 19, 'row': 28, 'value': 1.1882945401393357},
{'col': 19, 'row': 29, 'value': 1.1882945401393357},
{'col': 19, 'row': 30, 'value': 1.1882945401393357},
{'col': 19, 'row': 31, 'value': 1.5363401990278869},
{'col': 19, 'row': 32, 'value': 1.5363401990278869},
{'col': 19, 'row': 33, 'value': 1.5363401990278869},
{'col': 20, 'row': 1, 'value': 0.0},
{'col': 20, 'row': 2, 'value': 0.20676210509846782},
{'col': 20, 'row': 3, 'value': 1.3124540454506681},
{'col': 20, 'row': 4, 'value': 0.69691009192047326},
{'col': 20, 'row': 5, 'value': 0.68331399284525185},
{'col': 20, 'row': 6, 'value': 1.2558809596477545},
{'col': 21, 'row': 1, 'value': 1.7865777338626099},
{'col': 21, 'row': 2, 'value': 1.7865777338626099},
{'col': 21, 'row': 3, 'value': 1.7865777338626099},
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In [8]:
catabolic_heatmap_diagram = HeatmapWidget(html_style=html_style,
row_labels=row_labels,
col_labels=col_labels,
hcrow=hcrow,
hccol=hccol,
minval= min([x['value'] for x in heatmap_data]),
maxval= max([x['value'] for x in heatmap_data]),
heatmap_data=heatmap_data)
display(catabolic_heatmap_diagram)
In [ ]:
catabolic_genes = ome.query(GeneGroup).filter(GeneGroup.name.ilike('Glycero%')).first().genes
hcrow,hccol,row_labels,col_labels,heatmap_data = gene_heatmap(catabolic_genes,
analysis_type=DifferentialGeneExpressionData,
strain2=ome.query(Strain).all(),
environments2=ome.query(InVivoEnvironment).all())
In [9]:
catabolic_heatmap_diagram = HeatmapWidget(html_style=html_style,
row_labels=row_labels,
col_labels=col_labels,
hcrow=hcrow,
hccol=hccol,
minval= min([x['value'] for x in heatmap_data]),
maxval= max([x['value'] for x in heatmap_data]),
heatmap_data=heatmap_data)
display(catabolic_heatmap_diagram)
In [10]:
anabolic_genes = ome.query(GeneGroup).filter(GeneGroup.name.ilike('crp_anab%')).first().genes
hcrow,hccol,row_labels,col_labels,heatmap_data = gene_heatmap(anabolic_genes,dataset_type='rna_seq_experiment')
In [11]:
anabolic_heatmap_diagram = HeatmapWidget(html_style=html_style,
row_labels=row_labels,
col_labels=col_labels,
hcrow=hcrow,
hccol=hccol,
minval= min([x['value'] for x in heatmap_data]),
maxval= max([x['value'] for x in heatmap_data]),
heatmap_data=heatmap_data)
display(anabolic_heatmap_diagram)
In [6]:
chemiosmotic_genes = ome.query(GeneGroup).filter(GeneGroup.name.ilike('crp_chemi%')).first().genes
chem_hcrow,chem_hccol,chem_row_labels,chem_col_labels,chem_heatmap_data = gene_heatmap(chemiosmotic_genes,dataset_type='rna_seq_experiment')
In [7]:
chem_heatmap_diagram = HeatmapWidget(html_style=html_style,
row_labels=chem_row_labels,
col_labels=chem_col_labels,
hcrow=chem_hcrow,
hccol=chem_hccol,
minval= min([x['value'] for x in chem_heatmap_data]),
maxval= max([x['value'] for x in chem_heatmap_data]),
heatmap_data=chem_heatmap_data)
display(chem_heatmap_diagram)
In [ ]:
Content source: steve-federowicz/om
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