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!head data/GCF_000233375.1_ICSASG_v2_protein.faa


    

    




>NP_001116995.1 dj-1 protein [Salmo salar]
METVIPVDVMRRAGIAVTLAGLTGKDPVQCSRDIYLVPDSSLEDARKQGPYDVILLPGGALGAQNLSESPAVKEVLKDQE
GRKGLIAAICAGPTALLAHGIAYGSTVTTHPGAKDKMMTGGHYTYSEARVQKDCHLITSRGPGTSFEFALAIVEELMGAE
VAATVKAPLVLKD
>NP_001116996.1 serine/threonine protein kinase RAF1c [Salmo salar]
MEHIQGAWKTLSNGLGLKDSGFDDSCMSPTIMKGFPYQRRSSDDGKMADPKTSSTIRVFLPNKQCTVVNARPGMTLHNCL
IKAMKVXGLQPECCAVFRLHSAQSRKSRMDWNTDATSLIGEELLVDVLDHVPLTTHNFVRNTFLKLAFCDICQKFLLNGF
RCQTCGYKFHEHCSTKVPTMCVDWSNIRQLLLFPTPGETGGPSLPPLTSRRLRDSLSRFPVRHSTLHAFNQAPGSVLGAG
PAVLSHRLRSTSTPNVHMVSTTLPLDSTAFKDAMRSHESESPSDLSLTCWSQSVSSRAPAPMHKERAGSSNTQVKNRMRP
RXKRASSYYWEIEASEVVLQNRIGSGSFGTVYKGKWHGDVAVKILXVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYM

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!/Users/Shared/Apps/ncbi-blast-2.2.29\+/bin/blastp \
-query data/GCF_000233375.1_ICSASG_v2_protein.faa \
-db /Users/Steven/Documents/git-repos/course-fish546-2016/data/uniprot_sprot_r2016-09 \
-out ../analyses/2016-10-24/ICSASG-blastp-uniprot01.tab \
-num_threads 4 \
-max_target_seqs 1 \
-max_hsps 1 \
-outfmt 6


    

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