In [1]:

    

import matplotlib
import numpy as np
import matplotlib.pyplot as plt
from scipy import stats
from scipy import io
import scipy.io as sio
%matplotlib inline 
import pylab
import csv
from Tkinter import Tk
from tkFileDialog import askopenfilename
from tkFileDialog import askdirectory
import nibabel as nb
from scipy import io
#from nifti import NiftiImage
import nibabel as nb
from scipy.interpolate import interp1d
from scipy import ndimage


    

In [3]:

    

import pandas as pd


    

In [2]:

    

# from http://stackoverflow.com/questions/3579568/choosing-a-file-in-python-with-simple-dialog
Tk().withdraw() # we don't want a full GUI, so keep the root window from appearing
filename = askopenfilename() # show an "Open" dialog box and return the path to the selected file
print(filename)


    

    




/home/sophie/Downloads/100106forGerald.csv

In [5]:

    

TS=pd.read_csv(filename)


    

In [6]:

    

TS.shape


    

    
Out[6]:





(10608, 83)

In [10]:

    

TScorr=np.corrcoef(TS.T)


    

In [11]:

    

TScorr.shape


    

    
Out[11]:





(83, 83)

In [13]:

    

pd.DataFrame(TScorr).to_csv('100106TS80Corr.csv')


    

In [14]:

    

import seaborn as sns


    

    




---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
<ipython-input-14-ed9806ce3570> in <module>()
----> 1 import seaborn as sns

ImportError: No module named seaborn

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