In [1]:

    

import pymaid
import matplotlib.pyplot as plt

rm = pymaid.CatmaidInstance('server_url', 'api_token', 'http_user', 'http_password')

n = pymaid.get_neurons(16)

fig, ax = n.plot2d(connectors=False, linewidth=1)

plt.show()


    

In [2]:

    

smoothed = pymaid.smooth_neuron(n, inplace=False)


    

In [3]:

    

fig, ax = smoothed.plot2d(connectors=False, linewidth=1)

plt.show()


    

In [4]:

    

print('Old cable: {:.2f} um'.format(n.cable_length))
print('New cable: {:.2f} um'.format(smoothed.cable_length))


    

    




Old cable: 2866.10 um
New cable: 2987.53 um

In [5]:

    

more_smoothed = pymaid.smooth_neuron(n, 50, inplace=False)

fig, ax = more_smoothed.plot2d(connectors=False, linewidth=1)

plt.show()


    

In [6]:

    

too_smoothed = pymaid.smooth_neuron(n, 500, inplace=False)

fig, ax = too_smoothed.plot2d(connectors=False, linewidth=1)

plt.show()