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config['out_extensions'] = ['eps', 'png', 'pdf']

MAX_ROWS        = 10000

NROWS           = 1000
NROWS           = 10000
NROWS           = None

PARSE_VERBOSE   = False
#PARSE_VERBOSE   = True

REPORT_SIZE     = True

HISTOGRAM_COLOR = (0.5,0.5,0.5)
ALL_GRAPH_COLOR = (0.2,0.2,0.2)

CHROM_FIG_SCALE_FACTOR_H = 2
CHROM_FIG_SCALE_FACTOR_W = 2

FULL_FIG_W , FULL_FIG_H  = (19 if REPORT_SIZE else 16) , 8
CHROM_FIG_W, CHROM_FIG_H = FULL_FIG_W/CHROM_FIG_SCALE_FACTOR_W, (FULL_FIG_W*2)/CHROM_FIG_SCALE_FACTOR_H
CONFIG_GLOBAL = True


    

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cols_to_plot = [             
        # Col name                                        limit     # ticks graph opts
        #None, #[ "K-mer Coverage"                      , [0,1]   , 4,      {'color':'red'               }], 
        [ "K-mer Coverage averaged: 50 Kbp"             , [0,1]   , 4,      {'color':'orange'            }],
        [ "Sequencing Coverage"                         , None    , 10,     {'color':'green', 'logy':True, 'kind':'line'}],
        
        [ "Ns"                                          , [0.1,1] , 0,      {'color':'grey'              }],
        [ "AGP Contig"                                  , [0.1,1] , 0,      {'color':'grey'              }],
        [ "AGP Gap"                                     , [0.1,1] , 0,      {'color':'grey'              }],
        None, #[ "AGP Unknown"                          , [0.1,1] , 0,      {'color':'grey'              }],
        None, #[ "AGP Other"                            , [0.1,1] , 0,      {'color':'grey'              }],
        None, #[ "K-mer Coverage averaged: 500 bp"      , [0,None], 1,      {'color':'indianred'         }],
        None, #[ "K-mer Coverage averaged: 2.5 Kbp"     , [0,None], 2,      {'color':'limegreen'         }],
        None, #[ "K-mer Coverage averaged: 5 Kbp"       , [0,None], 1,      {'color':'cyan'              }],
              #[ "K-mer Coverage averaged: 50 Kbp"      , [0,None], 2,      {'color':'orange'            }],
        None, #[ "Sequencing Coverage"                  , None    , 5,      {'color':'green'             }],
        None, #[ "K-mer Coverage averaged: 1 Mbp"       , [0,None], 1,      {'color':'olive'             }],
        None, #[ "K-mer Coverage averaged: 5 Kbp before", [0,None], 2,      {'color':'violet'            }],
        None  #[ "K-mer Coverage averaged: 5 Kbp after" , [0,None], 2,      {'color':'maroon'            }]
    ]

BAC_MODE     = False
if 'BAC' in config:
    BAC_MODE = True
    cols_to_plot.insert(2, ['BLAST Coverage', [0, None], 5, {'color':'blue'}])
else:
    cols_to_plot.insert(2, None)